Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40478.t1 | RHN53335.1 | 94.5 | 364 | 20 | 0 | 4 | 367 | 28 | 391 | 1.70E-203 | 718.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40478.t1 | B9FSC8 | 74.6 | 358 | 85 | 1 | 15 | 366 | 6 | 363 | 3.1e-161 | 569.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40478.t1 | A0A396HPR0 | 94.5 | 364 | 20 | 0 | 4 | 367 | 28 | 391 | 1.2e-203 | 718.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene40478 | 0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene40478 | 0.818597 | 1.80E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene40478 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene40478 | 0.830875 | 2.29E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene40478 | 0.836141 | 1.11E-56 | -1.69E-46 |
| MS.gene052037 | MS.gene40478 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene40478 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene40478 | 0.801933 | 7.12E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene40478 | 0.842407 | 2.63E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene40478 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene055229 | MS.gene40478 | 0.80185 | 7.41E-49 | -1.69E-46 |
| MS.gene055231 | MS.gene40478 | 0.813321 | 2.72E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene40478 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene40478 | 0.820189 | 7.82E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene40478 | 0.821547 | 3.81E-53 | -1.69E-46 |
| MS.gene058769 | MS.gene40478 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene40478 | 0.833981 | 3.90E-56 | -1.69E-46 |
| MS.gene059686 | MS.gene40478 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene060412 | MS.gene40478 | 0.807075 | 6.03E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40478.t1 | MTR_5g006710 | 94.490 | 363 | 20 | 0 | 5 | 367 | 1 | 363 | 0.0 | 720 |
| MS.gene40478.t1 | MTR_5g006670 | 89.045 | 356 | 39 | 0 | 12 | 367 | 4 | 359 | 0.0 | 668 |
| MS.gene40478.t1 | MTR_5g006800 | 83.740 | 369 | 54 | 1 | 5 | 367 | 1 | 369 | 0.0 | 637 |
| MS.gene40478.t1 | MTR_5g006780 | 83.827 | 371 | 52 | 2 | 5 | 367 | 1 | 371 | 0.0 | 634 |
| MS.gene40478.t1 | MTR_5g006750 | 79.784 | 371 | 67 | 2 | 5 | 367 | 1 | 371 | 0.0 | 611 |
| MS.gene40478.t1 | MTR_5g006740 | 79.834 | 362 | 67 | 1 | 12 | 367 | 4 | 365 | 0.0 | 610 |
| MS.gene40478.t1 | MTR_5g008040 | 76.486 | 370 | 81 | 1 | 3 | 366 | 1 | 370 | 0.0 | 597 |
| MS.gene40478.t1 | MTR_5g006740 | 76.243 | 362 | 63 | 2 | 12 | 367 | 4 | 348 | 0.0 | 565 |
| MS.gene40478.t1 | MTR_3g115600 | 71.067 | 356 | 101 | 1 | 14 | 367 | 8 | 363 | 0.0 | 534 |
| MS.gene40478.t1 | MTR_5g006720 | 70.667 | 375 | 66 | 3 | 10 | 367 | 5 | 352 | 0.0 | 528 |
| MS.gene40478.t1 | MTR_4g125470 | 52.646 | 378 | 160 | 3 | 8 | 366 | 11 | 388 | 8.63e-144 | 413 |
| MS.gene40478.t1 | MTR_5g006730 | 94.872 | 117 | 6 | 0 | 5 | 121 | 1 | 117 | 1.73e-78 | 237 |
| MS.gene40478.t1 | MTR_3g096570 | 77.465 | 71 | 16 | 0 | 173 | 243 | 8 | 78 | 1.04e-30 | 118 |
| MS.gene40478.t1 | MTR_3g096562 | 67.901 | 81 | 26 | 0 | 163 | 243 | 162 | 242 | 1.05e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40478.t1 | AT1G76690 | 72.776 | 371 | 95 | 1 | 3 | 367 | 1 | 371 | 0.0 | 565 |
| MS.gene40478.t1 | AT1G76680 | 72.629 | 369 | 95 | 2 | 5 | 367 | 1 | 369 | 0.0 | 561 |
| MS.gene40478.t1 | AT1G76680 | 68.020 | 394 | 95 | 3 | 5 | 367 | 1 | 394 | 0.0 | 547 |
| MS.gene40478.t1 | AT1G09400 | 70.062 | 324 | 97 | 0 | 22 | 345 | 1 | 324 | 1.88e-176 | 493 |
| MS.gene40478.t1 | AT1G09400 | 71.970 | 264 | 74 | 0 | 82 | 345 | 2 | 265 | 7.97e-146 | 413 |
| MS.gene40478.t1 | AT2G06050 | 52.406 | 374 | 155 | 3 | 16 | 366 | 12 | 385 | 9.84e-143 | 410 |
| MS.gene40478.t1 | AT2G06050 | 52.406 | 374 | 155 | 3 | 16 | 366 | 12 | 385 | 9.84e-143 | 410 |
| MS.gene40478.t1 | AT2G06050 | 52.406 | 374 | 155 | 3 | 16 | 366 | 12 | 385 | 9.84e-143 | 410 |
| MS.gene40478.t1 | AT1G17990 | 71.146 | 253 | 70 | 2 | 14 | 264 | 7 | 258 | 2.34e-134 | 384 |
| MS.gene40478.t1 | AT1G18020 | 71.146 | 253 | 70 | 2 | 14 | 264 | 7 | 258 | 2.34e-134 | 384 |
| MS.gene40478.t1 | AT1G17990 | 67.984 | 253 | 70 | 3 | 14 | 264 | 7 | 250 | 1.36e-125 | 362 |
Find 83 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.196300 | 5.3:-1778581 | None:intergenic |
| AGGGCAGACCTTGTTGTTTA+TGG | 0.231299 | 5.3:+1778539 | MS.gene40478:CDS |
| TCAATGCTATAGCAGATAAT+AGG | 0.232603 | 5.3:+1778519 | MS.gene40478:CDS |
| TATGAGAAAACCACCTTTAG+AGG | 0.233951 | 5.3:-1776903 | None:intergenic |
| TATTTAAATGGGTATCAAAA+TGG | 0.268737 | 5.3:+1776644 | None:intergenic |
| TCATCATTTCAGAGTTGTTT+TGG | 0.287756 | 5.3:+1776808 | MS.gene40478:intron |
| CTCCTCTCAATAAATATAAC+AGG | 0.291526 | 5.3:+1778612 | MS.gene40478:CDS |
| TATGATCTCATTCTTGTTAG+TGG | 0.293944 | 5.3:-1776833 | None:intergenic |
| GCTGGAAGGGTTTCAAATTC+AGG | 0.316380 | 5.3:+1777070 | MS.gene40478:CDS |
| ATCCAAACACACCAGGTATA+TGG | 0.318288 | 5.3:+1776963 | MS.gene40478:CDS |
| AATGGTACTTTCATGGTTGC+AGG | 0.322861 | 5.3:+1778473 | MS.gene40478:CDS |
| GGCTTTCAATGGTACTTTCA+TGG | 0.340526 | 5.3:+1778466 | MS.gene40478:CDS |
| GTCCATATACCTGGTGTGTT+TGG | 0.341076 | 5.3:-1776965 | None:intergenic |
| GCATTAAGAGCAAATCTCTT+TGG | 0.352480 | 5.3:-1778590 | None:intergenic |
| CTCATTGGCACCAGACTGTA+AGG | 0.356523 | 5.3:-1778440 | None:intergenic |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 5.3:+1778334 | MS.gene40478:CDS |
| TGATCCGGTGGTAGGTTATA+CGG | 0.367077 | 5.3:+1778652 | MS.gene40478:CDS |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 5.3:-1778332 | None:intergenic |
| TTATCTTTCATGAATTGTTC+AGG | 0.388133 | 5.3:-1778152 | None:intergenic |
| TTGAATTTGCCCATCTTGTA+AGG | 0.388704 | 5.3:-1776705 | None:intergenic |
| TCATGAACCGCATCTACAAT+AGG | 0.389733 | 5.3:-1777013 | None:intergenic |
| GAGATAGGAGCAGATAAAGT+TGG | 0.397834 | 5.3:+1778260 | MS.gene40478:CDS |
| GAATCGTTGTCGATTTCCTT+TGG | 0.398546 | 5.3:+1778214 | MS.gene40478:CDS |
| AATGACAGAACAGATGAATA+TGG | 0.401093 | 5.3:+1778179 | MS.gene40478:CDS |
| TAAGGTGTAAGTAAAGGAAT+TGG | 0.408790 | 5.3:-1776687 | None:intergenic |
| GATATTGGTGCTTGTCCATT+CGG | 0.411160 | 5.3:-1777803 | None:intergenic |
| CTTTCTGCATATTCTGCAAA+TGG | 0.412616 | 5.3:-1778296 | None:intergenic |
| CTGAAATCATTGACAATATG+AGG | 0.422538 | 5.3:-1777902 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.422831 | 5.3:-1778455 | None:intergenic |
| TTCTGTCAAATTTGGCATGC+TGG | 0.423347 | 5.3:+1777052 | MS.gene40478:CDS |
| CAATGCTATAGCAGATAATA+GGG | 0.441084 | 5.3:+1778520 | MS.gene40478:CDS |
| GAAGCAGTTGCGAATGAGAT+AGG | 0.444031 | 5.3:+1778245 | MS.gene40478:CDS |
| GTCAAATTTGGCATGCTGGA+AGG | 0.444257 | 5.3:+1777056 | MS.gene40478:CDS |
| TTTACTTACACCTTACAAGA+TGG | 0.452565 | 5.3:+1776695 | MS.gene40478:CDS |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 5.3:+1778323 | MS.gene40478:CDS |
| GACATTCTACATTTCTGATC+CGG | 0.456348 | 5.3:+1778637 | MS.gene40478:CDS |
| GCAAATTCAATCTAGCTCAT+AGG | 0.460762 | 5.3:+1776718 | MS.gene40478:CDS |
| TTTCTCATAGCTGAAGCTAC+TGG | 0.465915 | 5.3:+1776917 | MS.gene40478:CDS |
| TCAAATTTGGCATGCTGGAA+GGG | 0.472329 | 5.3:+1777057 | MS.gene40478:CDS |
| TCACGAAACCGAGACGACTA+AGG | 0.488520 | 5.3:+1777867 | MS.gene40478:CDS |
| TCATCTGTCCTTAGTCGTCT+CGG | 0.489558 | 5.3:-1777875 | None:intergenic |
| CAGTCTGGTGCCAATGAGAA+AGG | 0.498444 | 5.3:+1778445 | MS.gene40478:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5.3:+1778113 | MS.gene40478:CDS |
| GTGGAACCAAGAATAAAATC+AGG | 0.503178 | 5.3:+1778398 | MS.gene40478:CDS |
| GACTTGTCTGTAGAAGATAT+TGG | 0.505257 | 5.3:-1777818 | None:intergenic |
| GAATAATACTTGATAGCAAT+GGG | 0.505456 | 5.3:-1776872 | None:intergenic |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 5.3:+1778322 | MS.gene40478:CDS |
| GATTGAAAGCCCTTACAGTC+TGG | 0.513661 | 5.3:+1778430 | MS.gene40478:CDS |
| TACTTGATAGCAATGGGTTG+AGG | 0.515275 | 5.3:-1776866 | None:intergenic |
| GGAGGCTATGACAGACAAGA+TGG | 0.516327 | 5.3:+1778494 | MS.gene40478:CDS |
| GCAAGAAATGCTATTGAAGC+TGG | 0.517901 | 5.3:+1777932 | MS.gene40478:CDS |
| TTACTTACACCTTACAAGAT+GGG | 0.519268 | 5.3:+1776696 | MS.gene40478:CDS |
| AGAATAATACTTGATAGCAA+TGG | 0.520679 | 5.3:-1776873 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5.3:+1778122 | MS.gene40478:CDS |
| TCCCTGTTATATTTATTGAG+AGG | 0.534017 | 5.3:-1778614 | None:intergenic |
| TATTCTCAGAGAACCTCTAA+AGG | 0.545106 | 5.3:+1776890 | MS.gene40478:CDS |
| ATCTTGTAAGGTGTAAGTAA+AGG | 0.563877 | 5.3:-1776693 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.571441 | 5.3:+1778455 | MS.gene40478:CDS |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 5.3:+1778376 | MS.gene40478:CDS |
| TACATTTCTGATCCGGTGGT+AGG | 0.590489 | 5.3:+1778644 | MS.gene40478:CDS |
| TAAATGGGTATCAAAATGGA+AGG | 0.592945 | 5.3:+1776648 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.594651 | 5.3:-1776974 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.3:-1778130 | None:intergenic |
| TCTCAGAGAACCTCTAAAGG+TGG | 0.598789 | 5.3:+1776893 | MS.gene40478:CDS |
| CTTTCATGAATTGTTCAGGT+AGG | 0.601902 | 5.3:-1778148 | None:intergenic |
| TCATTGGCACCAGACTGTAA+GGG | 0.602205 | 5.3:-1778439 | None:intergenic |
| GGTGTCTCTGACACTGCTCA+AGG | 0.607719 | 5.3:+1776938 | MS.gene40478:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.613321 | 5.3:-1778230 | None:intergenic |
| ATTCTACATTTCTGATCCGG+TGG | 0.614919 | 5.3:+1778640 | MS.gene40478:CDS |
| CAAGGCTATCCAAACACACC+AGG | 0.616594 | 5.3:+1776956 | MS.gene40478:CDS |
| GAGGCTATGACAGACAAGAT+GGG | 0.618192 | 5.3:+1778495 | MS.gene40478:CDS |
| GGTACTTTCATGGTTGCAGG+AGG | 0.622008 | 5.3:+1778476 | MS.gene40478:CDS |
| CTAAAGAGCATGTTGAGGCG+TGG | 0.628560 | 5.3:+1776987 | MS.gene40478:CDS |
| CTAACAGTTTATCAACCGAA+TGG | 0.632307 | 5.3:+1777788 | MS.gene40478:intron |
| GTGGAAACCTATTGTAGATG+CGG | 0.642769 | 5.3:+1777006 | MS.gene40478:CDS |
| GTAGATGCGGTTCATGACAA+AGG | 0.644665 | 5.3:+1777019 | MS.gene40478:CDS |
| TCCTCTCAATAAATATAACA+GGG | 0.647614 | 5.3:+1778613 | MS.gene40478:CDS |
| GACAGAACAGATGAATATGG+CGG | 0.673922 | 5.3:+1778182 | MS.gene40478:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 5.3:+1778379 | MS.gene40478:CDS |
| ATGGACTAAAGAGCATGTTG+AGG | 0.685195 | 5.3:+1776982 | MS.gene40478:CDS |
| TAGTCCGTATAACCTACCAC+CGG | 0.695454 | 5.3:-1778656 | None:intergenic |
| ACAAACGACCATAAACAACA+AGG | 0.713799 | 5.3:-1778547 | None:intergenic |
| GATGCGGTTCATGACAAAGG+CGG | 0.716742 | 5.3:+1777022 | MS.gene40478:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAATAAAATGATTT+GGG | + | chr5.3:1777684-1777703 | MS.gene40478:intron | 10.0% |
| !! | TACAATAAAATAAAATGATT+TGG | + | chr5.3:1777683-1777702 | MS.gene40478:intron | 10.0% |
| !!! | CTAAATTTTATTTTTATCAA+AGG | - | chr5.3:1777345-1777364 | None:intergenic | 10.0% |
| !!! | ATTATTGATTATTACTATCT+CGG | + | chr5.3:1777719-1777738 | MS.gene40478:intron | 15.0% |
| !!! | GTATATTTTTCTATCAAATT+TGG | + | chr5.3:1777256-1777275 | MS.gene40478:intron | 15.0% |
| !! | AAATAGAATAGAAAGTGAAA+TGG | - | chr5.3:1776757-1776776 | None:intergenic | 20.0% |
| !! | TTTAGAAAAAATAACACACA+GGG | - | chr5.3:1777488-1777507 | None:intergenic | 20.0% |
| !!! | GTATATTTTTCTGTCAAATT+TGG | + | chr5.3:1777044-1777063 | MS.gene40478:CDS | 20.0% |
| !!! | TAAAATAAAATGATTTGGGT+TGG | + | chr5.3:1777688-1777707 | MS.gene40478:intron | 20.0% |
| ! | AGACATCAATCAAATTACTT+GGG | + | chr5.3:1777648-1777667 | MS.gene40478:intron | 25.0% |
| ! | GATAAACTGTTAGATTAACA+AGG | - | chr5.3:1777781-1777800 | None:intergenic | 25.0% |
| ! | TAGACATCAATCAAATTACT+TGG | + | chr5.3:1777647-1777666 | MS.gene40478:intron | 25.0% |
| ! | TCCTCTCAATAAATATAACA+GGG | + | chr5.3:1778613-1778632 | MS.gene40478:CDS | 25.0% |
| ! | TTATCTTTCATGAATTGTTC+AGG | - | chr5.3:1778155-1778174 | None:intergenic | 25.0% |
| !! | AGAATAATACTTGATAGCAA+TGG | - | chr5.3:1776876-1776895 | None:intergenic | 25.0% |
| !! | CTTTAGAAAAAATAACACAC+AGG | - | chr5.3:1777489-1777508 | None:intergenic | 25.0% |
| !! | GAATAATACTTGATAGCAAT+GGG | - | chr5.3:1776875-1776894 | None:intergenic | 25.0% |
| AACTGTTAGATTAACAAGGA+AGG | - | chr5.3:1777777-1777796 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5.3:1778179-1778198 | MS.gene40478:CDS | 30.0% | |
| ATCTTGTAAGGTGTAAGTAA+AGG | - | chr5.3:1776696-1776715 | None:intergenic | 30.0% | |
| CAAATAGAATACTCACTGTA+TGG | + | chr5.3:1777744-1777763 | MS.gene40478:intron | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr5.3:1778376-1778395 | MS.gene40478:CDS | 30.0% | |
| CAATGCTATAGCAGATAATA+GGG | + | chr5.3:1778520-1778539 | MS.gene40478:CDS | 30.0% | |
| CGCTAATAACTTCAATAATG+TGG | - | chr5.3:1777599-1777618 | None:intergenic | 30.0% | |
| CTCAAATATAACATGCTCTA+AGG | + | chr5.3:1777231-1777250 | MS.gene40478:intron | 30.0% | |
| CTCCTCTCAATAAATATAAC+AGG | + | chr5.3:1778612-1778631 | MS.gene40478:CDS | 30.0% | |
| CTGAAATCATTGACAATATG+AGG | - | chr5.3:1777905-1777924 | None:intergenic | 30.0% | |
| GTTATATTTGAGCTAGGTAA+TGG | - | chr5.3:1777223-1777242 | None:intergenic | 30.0% | |
| TAAGGTGTAAGTAAAGGAAT+TGG | - | chr5.3:1776690-1776709 | None:intergenic | 30.0% | |
| TATGATCTCATTCTTGTTAG+TGG | - | chr5.3:1776836-1776855 | None:intergenic | 30.0% | |
| TCAATGCTATAGCAGATAAT+AGG | + | chr5.3:1778519-1778538 | MS.gene40478:CDS | 30.0% | |
| TCCCTGTTATATTTATTGAG+AGG | - | chr5.3:1778617-1778636 | None:intergenic | 30.0% | |
| TTACTTACACCTTACAAGAT+GGG | + | chr5.3:1776696-1776715 | MS.gene40478:CDS | 30.0% | |
| TTCAATGTGATGTAAATTGC+AGG | + | chr5.3:1778089-1778108 | MS.gene40478:intron | 30.0% | |
| TTCTATCAAATTTGGCATGT+TGG | + | chr5.3:1777264-1777283 | MS.gene40478:intron | 30.0% | |
| TTTACTTACACCTTACAAGA+TGG | + | chr5.3:1776695-1776714 | MS.gene40478:CDS | 30.0% | |
| TTTGTTGCAGAAAGTAGTAA+TGG | + | chr5.3:1777544-1777563 | MS.gene40478:intron | 30.0% | |
| ! | GGTAATGGTAAAATTATGCT+AGG | - | chr5.3:1777208-1777227 | None:intergenic | 30.0% |
| ! | TAAATAAAAGTGTGACCAGA+AGG | + | chr5.3:1777128-1777147 | MS.gene40478:intron | 30.0% |
| ! | TCATCACCTGATTTTATTCT+TGG | - | chr5.3:1778407-1778426 | None:intergenic | 30.0% |
| ! | TCATCATTTCAGAGTTGTTT+TGG | + | chr5.3:1776808-1776827 | MS.gene40478:intron | 30.0% |
| ! | TTGATGATCTTAACCAATTG+AGG | - | chr5.3:1777172-1777191 | None:intergenic | 30.0% |
| !! | AAATATAACATGCTCTAAGG+CGG | + | chr5.3:1777234-1777253 | MS.gene40478:intron | 30.0% |
| !! | AATAAAATGATTTGGGTTGG+AGG | + | chr5.3:1777691-1777710 | MS.gene40478:intron | 30.0% |
| !! | ATGTAAATTGCAGGTTTTGA+TGG | + | chr5.3:1778098-1778117 | MS.gene40478:intron | 30.0% |
| !! | TGTAAATTGCAGGTTTTGAT+GGG | + | chr5.3:1778099-1778118 | MS.gene40478:intron | 30.0% |
| AAATGCATTGGGACTTCATA+TGG | + | chr5.3:1778334-1778353 | MS.gene40478:CDS | 35.0% | |
| ACAAACGACCATAAACAACA+AGG | - | chr5.3:1778550-1778569 | None:intergenic | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | chr5.3:1778322-1778341 | MS.gene40478:CDS | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | - | chr5.3:1778335-1778354 | None:intergenic | 35.0% | |
| ATTGAAGCTGGTAAGTTTAC+TGG | + | chr5.3:1777944-1777963 | MS.gene40478:intron | 35.0% | |
| CTAACAGTTTATCAACCGAA+TGG | + | chr5.3:1777788-1777807 | MS.gene40478:intron | 35.0% | |
| CTTTCATGAATTGTTCAGGT+AGG | - | chr5.3:1778151-1778170 | None:intergenic | 35.0% | |
| CTTTCTGCATATTCTGCAAA+TGG | - | chr5.3:1778299-1778318 | None:intergenic | 35.0% | |
| GACATTCTACATTTCTGATC+CGG | + | chr5.3:1778637-1778656 | MS.gene40478:CDS | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | chr5.3:1778323-1778342 | MS.gene40478:CDS | 35.0% | |
| GACTTGTCTGTAGAAGATAT+TGG | - | chr5.3:1777821-1777840 | None:intergenic | 35.0% | |
| GAGCATGTTATATTTGAGCT+AGG | - | chr5.3:1777229-1777248 | None:intergenic | 35.0% | |
| GCATTAAGAGCAAATCTCTT+TGG | - | chr5.3:1778593-1778612 | None:intergenic | 35.0% | |
| GTGGAACCAAGAATAAAATC+AGG | + | chr5.3:1778398-1778417 | MS.gene40478:CDS | 35.0% | |
| GTTGGAAGAGTTTCAAATTC+AGG | + | chr5.3:1777282-1777301 | MS.gene40478:intron | 35.0% | |
| TATGAGAAAACCACCTTTAG+AGG | - | chr5.3:1776906-1776925 | None:intergenic | 35.0% | |
| TATTCTCAGAGAACCTCTAA+AGG | + | chr5.3:1776890-1776909 | MS.gene40478:CDS | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr5.3:1778379-1778398 | MS.gene40478:CDS | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5.3:1776708-1776727 | None:intergenic | 35.0% | |
| ! | GCAAATTCAATCTAGCTCAT+AGG | + | chr5.3:1776718-1776737 | MS.gene40478:CDS | 35.0% |
| !! | GGTAAGTTTACTGGTCTTTA+CGG | + | chr5.3:1777953-1777972 | MS.gene40478:intron | 35.0% |
| !! | GTAAATTGCAGGTTTTGATG+GGG | + | chr5.3:1778100-1778119 | MS.gene40478:intron | 35.0% |
| AATGGTACTTTCATGGTTGC+AGG | + | chr5.3:1778473-1778492 | MS.gene40478:CDS | 40.0% | |
| ACACAAATGGTTAGACCTTC+TGG | - | chr5.3:1777146-1777165 | None:intergenic | 40.0% | |
| ACACACTTCCAATTCACAAC+TGG | + | chr5.3:1777373-1777392 | MS.gene40478:intron | 40.0% | |
| ACGTGACACAAGCTACAAAT+AGG | + | chr5.3:1777570-1777589 | MS.gene40478:intron | 40.0% | |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr5.3:1778233-1778252 | None:intergenic | 40.0% | |
| AGCTGATGATCTGAACCAAT+CGG | - | chr5.3:1777432-1777451 | None:intergenic | 40.0% | |
| ATCCAAACACACCAGGTATA+TGG | + | chr5.3:1776963-1776982 | MS.gene40478:CDS | 40.0% | |
| ATTCTACATTTCTGATCCGG+TGG | + | chr5.3:1778640-1778659 | MS.gene40478:CDS | 40.0% | |
| CAATTCACAACTGGTGCAAA+CGG | + | chr5.3:1777382-1777401 | MS.gene40478:intron | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr5.3:1778455-1778474 | MS.gene40478:CDS | 40.0% | |
| CCAATTGAGGTTGACACAAA+TGG | - | chr5.3:1777159-1777178 | None:intergenic | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr5.3:1778458-1778477 | None:intergenic | 40.0% | |
| CCATTTGTGTCAACCTCAAT+TGG | + | chr5.3:1777156-1777175 | MS.gene40478:intron | 40.0% | |
| GACAGAACAGATGAATATGG+CGG | + | chr5.3:1778182-1778201 | MS.gene40478:CDS | 40.0% | |
| GAGATAGGAGCAGATAAAGT+TGG | + | chr5.3:1778260-1778279 | MS.gene40478:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.3:1778584-1778603 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1777932-1777951 | MS.gene40478:CDS | 40.0% | |
| GGCTTTCAATGGTACTTTCA+TGG | + | chr5.3:1778466-1778485 | MS.gene40478:CDS | 40.0% | |
| GTGGAAACCTATTGTAGATG+CGG | + | chr5.3:1777006-1777025 | MS.gene40478:CDS | 40.0% | |
| TCAAATTTGGCATGCTGGAA+GGG | + | chr5.3:1777057-1777076 | MS.gene40478:CDS | 40.0% | |
| TCATGAACCGCATCTACAAT+AGG | - | chr5.3:1777016-1777035 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.3:1776977-1776996 | None:intergenic | 40.0% | |
| TTCTGTCAAATTTGGCATGC+TGG | + | chr5.3:1777052-1777071 | MS.gene40478:CDS | 40.0% | |
| TTTCTCATAGCTGAAGCTAC+TGG | + | chr5.3:1776917-1776936 | MS.gene40478:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.3:1778113-1778132 | MS.gene40478:CDS | 40.0% | |
| ! | ATGGACTAAAGAGCATGTTG+AGG | + | chr5.3:1776982-1777001 | MS.gene40478:CDS | 40.0% |
| ! | GATATTGGTGCTTGTCCATT+CGG | - | chr5.3:1777806-1777825 | None:intergenic | 40.0% |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | chr5.3:1778214-1778233 | MS.gene40478:CDS | 40.0% |
| !! | TACTTGATAGCAATGGGTTG+AGG | - | chr5.3:1776869-1776888 | None:intergenic | 40.0% |
| CGTTTGCACCAGTTGTGAAT+TGG | - | chr5.3:1777384-1777403 | None:intergenic | 45.0% | |
| GAAGCAGTTGCGAATGAGAT+AGG | + | chr5.3:1778245-1778264 | MS.gene40478:CDS | 45.0% | |
| GAGGCTATGACAGACAAGAT+GGG | + | chr5.3:1778495-1778514 | MS.gene40478:CDS | 45.0% | |
| GATTGAAAGCCCTTACAGTC+TGG | + | chr5.3:1778430-1778449 | MS.gene40478:CDS | 45.0% | |
| GCTGGAAGGGTTTCAAATTC+AGG | + | chr5.3:1777070-1777089 | MS.gene40478:CDS | 45.0% | |
| GTAGATGCGGTTCATGACAA+AGG | + | chr5.3:1777019-1777038 | MS.gene40478:CDS | 45.0% | |
| GTCAAATTTGGCATGCTGGA+AGG | + | chr5.3:1777056-1777075 | MS.gene40478:CDS | 45.0% | |
| GTCCATATACCTGGTGTGTT+TGG | - | chr5.3:1776968-1776987 | None:intergenic | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.3:1778122-1778141 | MS.gene40478:CDS | 45.0% | |
| TACATTTCTGATCCGGTGGT+AGG | + | chr5.3:1778644-1778663 | MS.gene40478:CDS | 45.0% | |
| TAGTCCGTATAACCTACCAC+CGG | - | chr5.3:1778659-1778678 | None:intergenic | 45.0% | |
| TCATCTGTCCTTAGTCGTCT+CGG | - | chr5.3:1777878-1777897 | None:intergenic | 45.0% | |
| TCATTGGCACCAGACTGTAA+GGG | - | chr5.3:1778442-1778461 | None:intergenic | 45.0% | |
| TGATCCGGTGGTAGGTTATA+CGG | + | chr5.3:1778652-1778671 | MS.gene40478:CDS | 45.0% | |
| TGATCTGAACCAATCGGTGT+AGG | - | chr5.3:1777426-1777445 | None:intergenic | 45.0% | |
| ! | TCTCAGAGAACCTCTAAAGG+TGG | + | chr5.3:1776893-1776912 | MS.gene40478:CDS | 45.0% |
| !! | AGGGCAGACCTTGTTGTTTA+TGG | + | chr5.3:1778539-1778558 | MS.gene40478:CDS | 45.0% |
| !! | ATAAAAATAAAATTTAGATT+AGG | + | chr5.3:1777348-1777367 | MS.gene40478:intron | 5.0% |
| CAAGGCTATCCAAACACACC+AGG | + | chr5.3:1776956-1776975 | MS.gene40478:CDS | 50.0% | |
| CTATCTGTGCCTACACCGAT+TGG | + | chr5.3:1777414-1777433 | MS.gene40478:intron | 50.0% | |
| CTCATTGGCACCAGACTGTA+AGG | - | chr5.3:1778443-1778462 | None:intergenic | 50.0% | |
| GATGCGGTTCATGACAAAGG+CGG | + | chr5.3:1777022-1777041 | MS.gene40478:CDS | 50.0% | |
| GGAGGCTATGACAGACAAGA+TGG | + | chr5.3:1778494-1778513 | MS.gene40478:CDS | 50.0% | |
| GGTACTTTCATGGTTGCAGG+AGG | + | chr5.3:1778476-1778495 | MS.gene40478:CDS | 50.0% | |
| TCACGAAACCGAGACGACTA+AGG | + | chr5.3:1777867-1777886 | MS.gene40478:CDS | 50.0% | |
| ! | CAGTCTGGTGCCAATGAGAA+AGG | + | chr5.3:1778445-1778464 | MS.gene40478:CDS | 50.0% |
| ! | CTAAAGAGCATGTTGAGGCG+TGG | + | chr5.3:1776987-1777006 | MS.gene40478:CDS | 50.0% |
| GGTGTCTCTGACACTGCTCA+AGG | + | chr5.3:1776938-1776957 | MS.gene40478:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.3:1778133-1778152 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1776651 | 1778694 | 1776651 | ID=MS.gene40478 |
| chr5.3 | mRNA | 1776651 | 1778694 | 1776651 | ID=MS.gene40478.t1;Parent=MS.gene40478 |
| chr5.3 | exon | 1776651 | 1776739 | 1776651 | ID=MS.gene40478.t1.exon1;Parent=MS.gene40478.t1 |
| chr5.3 | CDS | 1776651 | 1776739 | 1776651 | ID=cds.MS.gene40478.t1;Parent=MS.gene40478.t1 |
| chr5.3 | exon | 1776820 | 1777091 | 1776820 | ID=MS.gene40478.t1.exon2;Parent=MS.gene40478.t1 |
| chr5.3 | CDS | 1776820 | 1777091 | 1776820 | ID=cds.MS.gene40478.t1;Parent=MS.gene40478.t1 |
| chr5.3 | exon | 1777795 | 1777953 | 1777795 | ID=MS.gene40478.t1.exon3;Parent=MS.gene40478.t1 |
| chr5.3 | CDS | 1777795 | 1777953 | 1777795 | ID=cds.MS.gene40478.t1;Parent=MS.gene40478.t1 |
| chr5.3 | exon | 1778111 | 1778694 | 1778111 | ID=MS.gene40478.t1.exon4;Parent=MS.gene40478.t1 |
| chr5.3 | CDS | 1778111 | 1778694 | 1778111 | ID=cds.MS.gene40478.t1;Parent=MS.gene40478.t1 |
| Gene Sequence |
| Protein sequence |
