Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40480.t1 | XP_003610764.1 | 97.3 | 371 | 10 | 0 | 1 | 371 | 1 | 371 | 2.80E-214 | 754.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40480.t1 | Q8LAH7 | 77.6 | 362 | 79 | 1 | 10 | 371 | 10 | 369 | 5.1e-172 | 605.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40480.t1 | B7FI39 | 97.3 | 371 | 10 | 0 | 1 | 371 | 1 | 371 | 2.0e-214 | 754.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene40480 | 0.82636 | 2.83E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene40480 | -0.805308 | 1.42E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene40480 | -0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene40480 | 0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene05104 | MS.gene40480 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene40480 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene054706 | MS.gene40480 | 0.801377 | 9.27E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene40480 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene40480 | 0.81106 | 8.46E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene40480 | -0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene40480 | 0.811614 | 6.41E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene40480 | 0.818549 | 1.85E-52 | -1.69E-46 |
| MS.gene058109 | MS.gene40480 | 0.811619 | 6.40E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene40480 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene40480 | -0.803933 | 2.75E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene40480 | 0.855182 | 7.49E-62 | -1.69E-46 |
| MS.gene058173 | MS.gene40480 | 0.857624 | 1.44E-62 | -1.69E-46 |
| MS.gene058175 | MS.gene40480 | 0.86144 | 1.02E-63 | -1.69E-46 |
| MS.gene058179 | MS.gene40480 | 0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene058180 | MS.gene40480 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene40480 | -0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene40480 | 0.80659 | 7.64E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene40480 | 0.807575 | 4.73E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40480.t1 | MTR_5g006750 | 97.305 | 371 | 10 | 0 | 1 | 371 | 1 | 371 | 0.0 | 752 |
| MS.gene40480.t1 | MTR_5g006780 | 89.757 | 371 | 38 | 0 | 1 | 371 | 1 | 371 | 0.0 | 703 |
| MS.gene40480.t1 | MTR_5g006800 | 87.062 | 371 | 46 | 1 | 1 | 371 | 1 | 369 | 0.0 | 680 |
| MS.gene40480.t1 | MTR_5g006670 | 82.834 | 367 | 55 | 2 | 5 | 371 | 1 | 359 | 0.0 | 637 |
| MS.gene40480.t1 | MTR_5g006740 | 79.837 | 367 | 72 | 1 | 5 | 371 | 1 | 365 | 0.0 | 630 |
| MS.gene40480.t1 | MTR_5g008040 | 77.297 | 370 | 82 | 1 | 1 | 370 | 3 | 370 | 0.0 | 615 |
| MS.gene40480.t1 | MTR_5g006710 | 80.822 | 365 | 62 | 2 | 7 | 371 | 7 | 363 | 0.0 | 613 |
| MS.gene40480.t1 | MTR_5g006740 | 76.022 | 367 | 69 | 2 | 5 | 371 | 1 | 348 | 0.0 | 584 |
| MS.gene40480.t1 | MTR_5g006720 | 70.976 | 379 | 70 | 3 | 4 | 371 | 3 | 352 | 0.0 | 549 |
| MS.gene40480.t1 | MTR_3g115600 | 67.127 | 362 | 113 | 2 | 10 | 371 | 8 | 363 | 0.0 | 517 |
| MS.gene40480.t1 | MTR_4g125470 | 53.083 | 373 | 158 | 5 | 12 | 370 | 19 | 388 | 7.85e-140 | 403 |
| MS.gene40480.t1 | MTR_5g006730 | 76.667 | 120 | 26 | 1 | 1 | 120 | 1 | 118 | 5.87e-61 | 192 |
| MS.gene40480.t1 | MTR_3g096570 | 69.231 | 78 | 21 | 1 | 177 | 254 | 8 | 82 | 6.90e-28 | 110 |
| MS.gene40480.t1 | MTR_3g096562 | 61.364 | 88 | 31 | 1 | 167 | 254 | 162 | 246 | 1.10e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40480.t1 | AT1G76680 | 77.624 | 362 | 79 | 1 | 10 | 371 | 10 | 369 | 0.0 | 603 |
| MS.gene40480.t1 | AT1G76690 | 77.072 | 362 | 81 | 1 | 10 | 371 | 12 | 371 | 0.0 | 601 |
| MS.gene40480.t1 | AT1G76680 | 72.610 | 387 | 79 | 2 | 10 | 371 | 10 | 394 | 0.0 | 590 |
| MS.gene40480.t1 | AT1G09400 | 68.072 | 332 | 98 | 2 | 18 | 349 | 1 | 324 | 2.29e-173 | 486 |
| MS.gene40480.t1 | AT1G09400 | 70.370 | 270 | 74 | 1 | 80 | 349 | 2 | 265 | 8.02e-144 | 408 |
| MS.gene40480.t1 | AT2G06050 | 49.337 | 377 | 170 | 5 | 12 | 370 | 12 | 385 | 2.39e-132 | 384 |
| MS.gene40480.t1 | AT2G06050 | 49.337 | 377 | 170 | 5 | 12 | 370 | 12 | 385 | 2.39e-132 | 384 |
| MS.gene40480.t1 | AT2G06050 | 49.337 | 377 | 170 | 5 | 12 | 370 | 12 | 385 | 2.39e-132 | 384 |
| MS.gene40480.t1 | AT1G17990 | 68.340 | 259 | 75 | 3 | 10 | 268 | 7 | 258 | 4.10e-131 | 376 |
| MS.gene40480.t1 | AT1G18020 | 68.340 | 259 | 75 | 3 | 10 | 268 | 7 | 258 | 4.10e-131 | 376 |
| MS.gene40480.t1 | AT1G17990 | 65.251 | 259 | 75 | 4 | 10 | 268 | 7 | 250 | 2.53e-122 | 353 |
Find 105 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTACTCCTTACAAAA+TGG | 0.177254 | 5.3:+1787499 | MS.gene40480:CDS |
| CAGAGAATTGGGACTTTATA+TGG | 0.218697 | 5.3:+1788536 | MS.gene40480:CDS |
| ATCCAGACACACCGGGTATT+TGG | 0.230705 | 5.3:+1787778 | MS.gene40480:CDS |
| AGGACAGACCTTGTTGTTTA+TGG | 0.235193 | 5.3:+1788741 | MS.gene40480:CDS |
| TACACTTCTGATCCAGTTAT+AGG | 0.260093 | 5.3:+1788846 | MS.gene40480:CDS |
| GCAAATCTCTTCGGCAAATC+TGG | 0.277734 | 5.3:-1788783 | None:intergenic |
| CTACATTCTTCTGTCAGATT+TGG | 0.278155 | 5.3:+1787859 | MS.gene40480:CDS |
| CTGAAGTCATTGACAATGTT+TGG | 0.290108 | 5.3:-1788129 | None:intergenic |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5.3:+1787617 | MS.gene40480:intron |
| GCTAATGCCCTCAATAAATA+TGG | 0.309977 | 5.3:+1788558 | MS.gene40480:CDS |
| GCCCTGTTGTACTTGTTTAG+AGG | 0.312031 | 5.3:-1788816 | None:intergenic |
| TTCATCTATCCTTAGCCGTC+TGG | 0.324142 | 5.3:-1788103 | None:intergenic |
| GGCCTTCAAAGGCACTTTCC+TGG | 0.328985 | 5.3:+1788668 | MS.gene40480:CDS |
| TAAGGAGTAAGAAGAGGAAT+TGG | 0.337433 | 5.3:-1787491 | None:intergenic |
| CATATAAAGTCCCAATTCTC+TGG | 0.343157 | 5.3:-1788535 | None:intergenic |
| CGGGTTCTTCATTCAAGAAA+AGG | 0.354009 | 5.3:-1788882 | None:intergenic |
| GAACCGTTGTCGGATTGTTT+TGG | 0.358599 | 5.3:+1788416 | MS.gene40480:CDS |
| TTTGATGGGGTTGAAATTCA+TGG | 0.366172 | 5.3:+1788315 | MS.gene40480:CDS |
| AGACTCTAATCCCAGAGAAT+TGG | 0.370356 | 5.3:+1788524 | MS.gene40480:CDS |
| GTGCAAATTGCAGGATTTGA+TGG | 0.377428 | 5.3:+1788300 | MS.gene40480:intron |
| CTCCTCTAAACAAGTACAAC+AGG | 0.379642 | 5.3:+1788814 | MS.gene40480:CDS |
| GTCCAAATACCCGGTGTGTC+TGG | 0.387956 | 5.3:-1787780 | None:intergenic |
| GTTGGAAGAGTTTCTGATAC+TGG | 0.389203 | 5.3:+1787885 | MS.gene40480:CDS |
| CTTCTTACTCCTTACAAAAT+GGG | 0.390500 | 5.3:+1787500 | MS.gene40480:CDS |
| GACTCTAATCCCAGAGAATT+GGG | 0.395099 | 5.3:+1788525 | MS.gene40480:CDS |
| TAGTCAGTATAACCTATAAC+TGG | 0.418621 | 5.3:-1788858 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.429144 | 5.3:+1788301 | MS.gene40480:intron |
| ACAGAAGAATGTAGCACCTT+TGG | 0.437106 | 5.3:-1787850 | None:intergenic |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5.3:-1788566 | None:intergenic |
| GTTGAAATTCATGGGGCAAA+TGG | 0.460599 | 5.3:+1788324 | MS.gene40480:CDS |
| AAAGGCACTTTCCTGGCTGC+AGG | 0.463990 | 5.3:+1788675 | MS.gene40480:CDS |
| TCAATGCCATAGCTGAAAAC+AGG | 0.465430 | 5.3:+1788721 | MS.gene40480:CDS |
| GATATCGGTGCCTGTCCATT+CGG | 0.469149 | 5.3:-1788012 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5.3:+1788381 | MS.gene40480:CDS |
| GAAAATTTAATCTAGCTCAT+AGG | 0.472046 | 5.3:+1787522 | MS.gene40480:CDS |
| TCATCTATCCTTAGCCGTCT+GGG | 0.477854 | 5.3:-1788102 | None:intergenic |
| CATTCTGCATATTCTGCAAA+AGG | 0.478830 | 5.3:-1788498 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.480638 | 5.3:+1788647 | MS.gene40480:CDS |
| GAGAAGACCTCCGTTAGAAC+CGG | 0.487068 | 5.3:-1787715 | None:intergenic |
| GCATGAACAGCATCCACAAT+GGG | 0.488648 | 5.3:-1787828 | None:intergenic |
| AGCCAGGAAAGTGCCTTTGA+AGG | 0.492316 | 5.3:-1788670 | None:intergenic |
| CAATCCGACAACGGTTCTCA+AGG | 0.497852 | 5.3:-1788410 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.3:-1787675 | None:intergenic |
| GAGATAGGTGCAGATAGAGT+TGG | 0.504106 | 5.3:+1788462 | MS.gene40480:CDS |
| GTAGGATCTGTTTCTTGTGA+GGG | 0.505510 | 5.3:-1787643 | None:intergenic |
| GGGTTCTTCATTCAAGAAAA+GGG | 0.507807 | 5.3:-1788881 | None:intergenic |
| TTGATGGGGTTGAAATTCAT+GGG | 0.511805 | 5.3:+1788316 | MS.gene40480:CDS |
| TTCTGTCAGATTTGGCATGT+TGG | 0.513208 | 5.3:+1787867 | MS.gene40480:CDS |
| GCATTAAGTGCAAATCTCTT+CGG | 0.516430 | 5.3:-1788792 | None:intergenic |
| TTGAGCGGTGTCAGATATAC+CGG | 0.517615 | 5.3:-1787751 | None:intergenic |
| GTCAGATATACCGGTAGCTT+CGG | 0.517815 | 5.3:-1787742 | None:intergenic |
| GGTCGTAACCTCCTGCAGCC+AGG | 0.519395 | 5.3:-1788686 | None:intergenic |
| CTGCTCTCTGAGAGTAATAG+AGG | 0.524441 | 5.3:-1787692 | None:intergenic |
| TGCAGGAGGTTACGACCGAC+AGG | 0.525125 | 5.3:+1788692 | MS.gene40480:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.525355 | 5.3:-1788565 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.526907 | 5.3:+1788447 | MS.gene40480:CDS |
| CGTAGGATCTGTTTCTTGTG+AGG | 0.527234 | 5.3:-1787644 | None:intergenic |
| CAGAGAGCAGCCGGTTCTAA+CGG | 0.528139 | 5.3:+1787705 | MS.gene40480:CDS |
| GGCTTGTCTGTAGAAGATAT+CGG | 0.532354 | 5.3:-1788027 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.3:+1788159 | MS.gene40480:CDS |
| ATATAAAGTCCCAATTCTCT+GGG | 0.547129 | 5.3:-1788534 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.547363 | 5.3:+1788406 | MS.gene40480:CDS |
| ACACCACAACTTCGAAGTAA+TGG | 0.557692 | 5.3:+1788054 | MS.gene40480:CDS |
| TCACACCGCCCAGACGGCTA+AGG | 0.560646 | 5.3:+1788094 | MS.gene40480:CDS |
| TATTACTCTCAGAGAGCAGC+CGG | 0.562746 | 5.3:+1787696 | MS.gene40480:CDS |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5.3:-1788657 | None:intergenic |
| TCATCGGCACAAGGCTGTGA+GGG | 0.571682 | 5.3:-1788641 | None:intergenic |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5.3:-1788650 | None:intergenic |
| CTTCTCTTAACCGAAGCTAC+CGG | 0.577933 | 5.3:+1787732 | MS.gene40480:CDS |
| ATACCATTACTTCGAAGTTG+TGG | 0.579878 | 5.3:-1788057 | None:intergenic |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5.3:+1788657 | MS.gene40480:CDS |
| CTTCGAAGTTGTGGTGTGAG+TGG | 0.589473 | 5.3:-1788048 | None:intergenic |
| GGCACTTTCCTGGCTGCAGG+AGG | 0.593619 | 5.3:+1788678 | MS.gene40480:CDS |
| CTCATCGGCACAAGGCTGTG+AGG | 0.596585 | 5.3:-1788642 | None:intergenic |
| CTCACAAGAAACAGATCCTA+CGG | 0.597427 | 5.3:+1787645 | MS.gene40480:CDS |
| GGTATATCTGACACCGCTCA+AGG | 0.602455 | 5.3:+1787753 | MS.gene40480:CDS |
| CAAGGATATCCAGACACACC+GGG | 0.603203 | 5.3:+1787771 | MS.gene40480:CDS |
| TAGGATCTGTTTCTTGTGAG+GGG | 0.607086 | 5.3:-1787642 | None:intergenic |
| GGAGGTTACGACCGACAGGA+TGG | 0.607400 | 5.3:+1788696 | MS.gene40480:CDS |
| GCAAATTGCAGGATTTGATG+GGG | 0.608055 | 5.3:+1788302 | MS.gene40480:intron |
| CTAAAGAGCATGTCGAGGCG+TGG | 0.609058 | 5.3:+1787802 | MS.gene40480:CDS |
| CGGAATTCACACCGCCCAGA+CGG | 0.612075 | 5.3:+1788088 | MS.gene40480:CDS |
| GTGGATGCTGTTCATGCCAA+AGG | 0.616714 | 5.3:+1787834 | MS.gene40480:CDS |
| TGCTCTTTAGTCCAAATACC+CGG | 0.617459 | 5.3:-1787789 | None:intergenic |
| GAGGTTACGACCGACAGGAT+GGG | 0.619159 | 5.3:+1788697 | MS.gene40480:CDS |
| TGGCATTGATCCCATCCTGT+CGG | 0.623618 | 5.3:-1788707 | None:intergenic |
| AATCCGACAACGGTTCTCAA+GGG | 0.625686 | 5.3:-1788409 | None:intergenic |
| GGCATGAACAGCATCCACAA+TGG | 0.625777 | 5.3:-1787829 | None:intergenic |
| TTCTCGGTTCCACCACGTGA+AGG | 0.628277 | 5.3:-1788590 | None:intergenic |
| TGATGGGGTTGAAATTCATG+GGG | 0.629040 | 5.3:+1788317 | MS.gene40480:CDS |
| AAGTAATGGTATTGATGTCG+CGG | 0.637452 | 5.3:+1788068 | MS.gene40480:CDS |
| TATTCTTTACCTTCACGTGG+TGG | 0.638200 | 5.3:+1788581 | MS.gene40480:CDS |
| TGGTATTCTTTACCTTCACG+TGG | 0.641993 | 5.3:+1788578 | MS.gene40480:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5.3:+1788384 | MS.gene40480:CDS |
| TCAAGGATATCCAGACACAC+CGG | 0.652106 | 5.3:+1787770 | MS.gene40480:CDS |
| AGGTTGTGGAACATTGCCGT+AGG | 0.656729 | 5.3:-1787661 | None:intergenic |
| AGAGCAGCCGGTTCTAACGG+AGG | 0.662133 | 5.3:+1787708 | MS.gene40480:CDS |
| CGAGGCGTGGAAACCCATTG+TGG | 0.669254 | 5.3:+1787815 | MS.gene40480:CDS |
| CTTCCAAAACAATCCGACAA+CGG | 0.685561 | 5.3:-1788419 | None:intergenic |
| GAGTAATAGAGGATAGCATG+AGG | 0.689366 | 5.3:-1787681 | None:intergenic |
| TCCTCTAAACAAGTACAACA+GGG | 0.691494 | 5.3:+1788815 | MS.gene40480:CDS |
| TTGGACTAAAGAGCATGTCG+AGG | 0.707515 | 5.3:+1787797 | MS.gene40480:CDS |
| ACAAACGACCATAAACAACA+AGG | 0.713799 | 5.3:-1788749 | None:intergenic |
| TCTATCCTTAGCCGTCTGGG+CGG | 0.735343 | 5.3:-1788099 | None:intergenic |
| TGTGTCTGGATATCCTTGAG+CGG | 0.747606 | 5.3:-1787766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.3:1788569-1788588 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.3:1788568-1788587 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCCCATTTTGTA+AGG | - | chr5.3:1787512-1787531 | None:intergenic | 20.0% |
| ! | AATTCTGTAACATACTCATT+GGG | + | chr5.3:1788277-1788296 | MS.gene40480:intron | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5.3:1787617-1787636 | MS.gene40480:intron | 25.0% |
| !! | GAAAATTTAATCTAGCTCAT+AGG | + | chr5.3:1787522-1787541 | MS.gene40480:CDS | 25.0% |
| !! | TCATTAACAGTTTTCATTCT+CGG | - | chr5.3:1788609-1788628 | None:intergenic | 25.0% |
| !!! | CACATAACTTTGAAATTCAA+TGG | - | chr5.3:1787581-1787600 | None:intergenic | 25.0% |
| !!! | GATATTTTTGTTGCTTTAGA+GGG | + | chr5.3:1788238-1788257 | MS.gene40480:intron | 25.0% |
| !!! | TAACTTTGAAATTCAATGGA+AGG | - | chr5.3:1787577-1787596 | None:intergenic | 25.0% |
| !!! | TGATATTTTTGTTGCTTTAG+AGG | + | chr5.3:1788237-1788256 | MS.gene40480:intron | 25.0% |
| AATGACAGAACAGATGAATA+TGG | + | chr5.3:1788381-1788400 | MS.gene40480:CDS | 30.0% | |
| ATATAAAGTCCCAATTCTCT+GGG | - | chr5.3:1788537-1788556 | None:intergenic | 30.0% | |
| ATTCTGTAACATACTCATTG+GGG | + | chr5.3:1788278-1788297 | MS.gene40480:intron | 30.0% | |
| CAATTCTGTAACATACTCAT+TGG | + | chr5.3:1788276-1788295 | MS.gene40480:intron | 30.0% | |
| CTTCTTACTCCTTACAAAAT+GGG | + | chr5.3:1787500-1787519 | MS.gene40480:CDS | 30.0% | |
| GCAACAAAAATATCAATGTC+TGG | - | chr5.3:1788232-1788251 | None:intergenic | 30.0% | |
| GGAAAAGAACATATAGATGT+AGG | - | chr5.3:1787977-1787996 | None:intergenic | 30.0% | |
| TAGTCAGTATAACCTATAAC+TGG | - | chr5.3:1788861-1788880 | None:intergenic | 30.0% | |
| TCTTCTTACTCCTTACAAAA+TGG | + | chr5.3:1787499-1787518 | MS.gene40480:CDS | 30.0% | |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5.3:1787500-1787519 | None:intergenic | 30.0% |
| ACAAACGACCATAAACAACA+AGG | - | chr5.3:1788752-1788771 | None:intergenic | 35.0% | |
| ATACCATTACTTCGAAGTTG+TGG | - | chr5.3:1788060-1788079 | None:intergenic | 35.0% | |
| CAGAGAATTGGGACTTTATA+TGG | + | chr5.3:1788536-1788555 | MS.gene40480:CDS | 35.0% | |
| CATATAAAGTCCCAATTCTC+TGG | - | chr5.3:1788538-1788557 | None:intergenic | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5.3:1788501-1788520 | None:intergenic | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.3:1787859-1787878 | MS.gene40480:CDS | 35.0% | |
| CTGAAGTCATTGACAATGTT+TGG | - | chr5.3:1788132-1788151 | None:intergenic | 35.0% | |
| GCATTAAGTGCAAATCTCTT+CGG | - | chr5.3:1788795-1788814 | None:intergenic | 35.0% | |
| GCTAATGCCCTCAATAAATA+TGG | + | chr5.3:1788558-1788577 | MS.gene40480:CDS | 35.0% | |
| GGAAGGATGAATGAAATGAA+AGG | - | chr5.3:1787560-1787579 | None:intergenic | 35.0% | |
| TAAGGAGTAAGAAGAGGAAT+TGG | - | chr5.3:1787494-1787513 | None:intergenic | 35.0% | |
| TACACTTCTGATCCAGTTAT+AGG | + | chr5.3:1788846-1788865 | MS.gene40480:CDS | 35.0% | |
| TCCTCTAAACAAGTACAACA+GGG | + | chr5.3:1788815-1788834 | MS.gene40480:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.3:1788301-1788320 | MS.gene40480:intron | 35.0% | |
| TTGATGGGGTTGAAATTCAT+GGG | + | chr5.3:1788316-1788335 | MS.gene40480:CDS | 35.0% | |
| TTTGATGGGGTTGAAATTCA+TGG | + | chr5.3:1788315-1788334 | MS.gene40480:CDS | 35.0% | |
| !! | AAGTAATGGTATTGATGTCG+CGG | + | chr5.3:1788068-1788087 | MS.gene40480:CDS | 35.0% |
| ACACCACAACTTCGAAGTAA+TGG | + | chr5.3:1788054-1788073 | MS.gene40480:CDS | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5.3:1787853-1787872 | None:intergenic | 40.0% | |
| AGACTCTAATCCCAGAGAAT+TGG | + | chr5.3:1788524-1788543 | MS.gene40480:CDS | 40.0% | |
| ATTCGGCTGAAAAACTGTTG+GGG | - | chr5.3:1787998-1788017 | None:intergenic | 40.0% | |
| CATTCGGCTGAAAAACTGTT+GGG | - | chr5.3:1787999-1788018 | None:intergenic | 40.0% | |
| CTCACAAGAAACAGATCCTA+CGG | + | chr5.3:1787645-1787664 | MS.gene40480:CDS | 40.0% | |
| CTCCTCTAAACAAGTACAAC+AGG | + | chr5.3:1788814-1788833 | MS.gene40480:CDS | 40.0% | |
| CTTCCAAAACAATCCGACAA+CGG | - | chr5.3:1788422-1788441 | None:intergenic | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.3:1788447-1788466 | MS.gene40480:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.3:1788384-1788403 | MS.gene40480:CDS | 40.0% | |
| GACTCTAATCCCAGAGAATT+GGG | + | chr5.3:1788525-1788544 | MS.gene40480:CDS | 40.0% | |
| GAGTAATAGAGGATAGCATG+AGG | - | chr5.3:1787684-1787703 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.3:1788302-1788321 | MS.gene40480:intron | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1788159-1788178 | MS.gene40480:CDS | 40.0% | |
| GGCTTGTCTGTAGAAGATAT+CGG | - | chr5.3:1788030-1788049 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.3:1788300-1788319 | MS.gene40480:intron | 40.0% | |
| GTTGAAATTCATGGGGCAAA+TGG | + | chr5.3:1788324-1788343 | MS.gene40480:CDS | 40.0% | |
| GTTGGAAGAGTTTCTGATAC+TGG | + | chr5.3:1787885-1787904 | MS.gene40480:CDS | 40.0% | |
| TATTCTTTACCTTCACGTGG+TGG | + | chr5.3:1788581-1788600 | MS.gene40480:CDS | 40.0% | |
| TCAATGCCATAGCTGAAAAC+AGG | + | chr5.3:1788721-1788740 | MS.gene40480:CDS | 40.0% | |
| TGATGGGGTTGAAATTCATG+GGG | + | chr5.3:1788317-1788336 | MS.gene40480:CDS | 40.0% | |
| TGCTCTTTAGTCCAAATACC+CGG | - | chr5.3:1787792-1787811 | None:intergenic | 40.0% | |
| TGGTATTCTTTACCTTCACG+TGG | + | chr5.3:1788578-1788597 | MS.gene40480:CDS | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.3:1787867-1787886 | MS.gene40480:CDS | 40.0% | |
| ! | GTAGGATCTGTTTCTTGTGA+GGG | - | chr5.3:1787646-1787665 | None:intergenic | 40.0% |
| ! | TAGGATCTGTTTCTTGTGAG+GGG | - | chr5.3:1787645-1787664 | None:intergenic | 40.0% |
| !! | AGGACAGACCTTGTTGTTTA+TGG | + | chr5.3:1788741-1788760 | MS.gene40480:CDS | 40.0% |
| AATCCGACAACGGTTCTCAA+GGG | - | chr5.3:1788412-1788431 | None:intergenic | 45.0% | |
| CCATTCGGCTGAAAAACTGT+TGG | - | chr5.3:1788000-1788019 | None:intergenic | 45.0% | |
| CTTCTCTTAACCGAAGCTAC+CGG | + | chr5.3:1787732-1787751 | MS.gene40480:CDS | 45.0% | |
| GAGATAGGTGCAGATAGAGT+TGG | + | chr5.3:1788462-1788481 | MS.gene40480:CDS | 45.0% | |
| GCAAATCTCTTCGGCAAATC+TGG | - | chr5.3:1788786-1788805 | None:intergenic | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5.3:1787831-1787850 | None:intergenic | 45.0% | |
| GCCCTGTTGTACTTGTTTAG+AGG | - | chr5.3:1788819-1788838 | None:intergenic | 45.0% | |
| GTCAGATATACCGGTAGCTT+CGG | - | chr5.3:1787745-1787764 | None:intergenic | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.3:1787678-1787697 | None:intergenic | 45.0% | |
| TATTACTCTCAGAGAGCAGC+CGG | + | chr5.3:1787696-1787715 | MS.gene40480:CDS | 45.0% | |
| TCAAGGATATCCAGACACAC+CGG | + | chr5.3:1787770-1787789 | MS.gene40480:CDS | 45.0% | |
| TCATCTATCCTTAGCCGTCT+GGG | - | chr5.3:1788105-1788124 | None:intergenic | 45.0% | |
| TGTGTCTGGATATCCTTGAG+CGG | - | chr5.3:1787769-1787788 | None:intergenic | 45.0% | |
| TTCATCTATCCTTAGCCGTC+TGG | - | chr5.3:1788106-1788125 | None:intergenic | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5.3:1788660-1788679 | None:intergenic | 45.0% |
| ! | CGTAGGATCTGTTTCTTGTG+AGG | - | chr5.3:1787647-1787666 | None:intergenic | 45.0% |
| ! | CTGCTCTCTGAGAGTAATAG+AGG | - | chr5.3:1787695-1787714 | None:intergenic | 45.0% |
| ! | GAACCGTTGTCGGATTGTTT+TGG | + | chr5.3:1788416-1788435 | MS.gene40480:CDS | 45.0% |
| ! | GTCTGTCCTGTTTTCAGCTA+TGG | - | chr5.3:1788730-1788749 | None:intergenic | 45.0% |
| ! | TTGAGCGGTGTCAGATATAC+CGG | - | chr5.3:1787754-1787773 | None:intergenic | 45.0% |
| ! | TTGGACTAAAGAGCATGTCG+AGG | + | chr5.3:1787797-1787816 | MS.gene40480:CDS | 45.0% |
| !! | AGTTTTTCAGCCGAATGGAC+AGG | + | chr5.3:1788002-1788021 | MS.gene40480:intron | 45.0% |
| !! | CCAACAGTTTTTCAGCCGAA+TGG | + | chr5.3:1787997-1788016 | MS.gene40480:intron | 45.0% |
| !! | TTGTTGCTTTAGAGGGCACT+AGG | + | chr5.3:1788245-1788264 | MS.gene40480:intron | 45.0% |
| AGGTTGTGGAACATTGCCGT+AGG | - | chr5.3:1787664-1787683 | None:intergenic | 50.0% | |
| ATCCAGACACACCGGGTATT+TGG | + | chr5.3:1787778-1787797 | MS.gene40480:CDS | 50.0% | |
| CAAGGATATCCAGACACACC+GGG | + | chr5.3:1787771-1787790 | MS.gene40480:CDS | 50.0% | |
| CAATCCGACAACGGTTCTCA+AGG | - | chr5.3:1788413-1788432 | None:intergenic | 50.0% | |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5.3:1788657-1788676 | MS.gene40480:CDS | 50.0% | |
| CTCATTGGGGTGCAAATTGC+AGG | + | chr5.3:1788291-1788310 | MS.gene40480:intron | 50.0% | |
| CTTCGAAGTTGTGGTGTGAG+TGG | - | chr5.3:1788051-1788070 | None:intergenic | 50.0% | |
| GAGAAGACCTCCGTTAGAAC+CGG | - | chr5.3:1787718-1787737 | None:intergenic | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.3:1788406-1788425 | MS.gene40480:CDS | 50.0% | |
| GGCATGAACAGCATCCACAA+TGG | - | chr5.3:1787832-1787851 | None:intergenic | 50.0% | |
| GGTATATCTGACACCGCTCA+AGG | + | chr5.3:1787753-1787772 | MS.gene40480:CDS | 50.0% | |
| GTGGATGCTGTTCATGCCAA+AGG | + | chr5.3:1787834-1787853 | MS.gene40480:CDS | 50.0% | |
| ! | GATATCGGTGCCTGTCCATT+CGG | - | chr5.3:1788015-1788034 | None:intergenic | 50.0% |
| !! | AGCCAGGAAAGTGCCTTTGA+AGG | - | chr5.3:1788673-1788692 | None:intergenic | 50.0% |
| !! | TGGCATTGATCCCATCCTGT+CGG | - | chr5.3:1788710-1788729 | None:intergenic | 50.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5.3:1788653-1788672 | None:intergenic | 55.0% | |
| GAGGTTACGACCGACAGGAT+GGG | + | chr5.3:1788697-1788716 | MS.gene40480:CDS | 55.0% | |
| GTCCAAATACCCGGTGTGTC+TGG | - | chr5.3:1787783-1787802 | None:intergenic | 55.0% | |
| TCATCGGCACAAGGCTGTGA+GGG | - | chr5.3:1788644-1788663 | None:intergenic | 55.0% | |
| TCTATCCTTAGCCGTCTGGG+CGG | - | chr5.3:1788102-1788121 | None:intergenic | 55.0% | |
| TTCTCGGTTCCACCACGTGA+AGG | - | chr5.3:1788593-1788612 | None:intergenic | 55.0% | |
| ! | CAGAGAGCAGCCGGTTCTAA+CGG | + | chr5.3:1787705-1787724 | MS.gene40480:CDS | 55.0% |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5.3:1788647-1788666 | MS.gene40480:CDS | 55.0% |
| ! | CTAAAGAGCATGTCGAGGCG+TGG | + | chr5.3:1787802-1787821 | MS.gene40480:CDS | 55.0% |
| !! | AAAGGCACTTTCCTGGCTGC+AGG | + | chr5.3:1788675-1788694 | MS.gene40480:CDS | 55.0% |
| !! | GGCCTTCAAAGGCACTTTCC+TGG | + | chr5.3:1788668-1788687 | MS.gene40480:CDS | 55.0% |
| CGAGGCGTGGAAACCCATTG+TGG | + | chr5.3:1787815-1787834 | MS.gene40480:CDS | 60.0% | |
| CGGAATTCACACCGCCCAGA+CGG | + | chr5.3:1788088-1788107 | MS.gene40480:CDS | 60.0% | |
| CTCATCGGCACAAGGCTGTG+AGG | - | chr5.3:1788645-1788664 | None:intergenic | 60.0% | |
| GGAGGTTACGACCGACAGGA+TGG | + | chr5.3:1788696-1788715 | MS.gene40480:CDS | 60.0% | |
| TGCAGGAGGTTACGACCGAC+AGG | + | chr5.3:1788692-1788711 | MS.gene40480:CDS | 60.0% | |
| ! | AGAGCAGCCGGTTCTAACGG+AGG | + | chr5.3:1787708-1787727 | MS.gene40480:CDS | 60.0% |
| GGCACTTTCCTGGCTGCAGG+AGG | + | chr5.3:1788678-1788697 | MS.gene40480:CDS | 65.0% | |
| GGTCGTAACCTCCTGCAGCC+AGG | - | chr5.3:1788689-1788708 | None:intergenic | 65.0% | |
| TCACACCGCCCAGACGGCTA+AGG | + | chr5.3:1788094-1788113 | MS.gene40480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1787467 | 1788896 | 1787467 | ID=MS.gene40480 |
| chr5.3 | mRNA | 1787467 | 1788896 | 1787467 | ID=MS.gene40480.t1;Parent=MS.gene40480 |
| chr5.3 | exon | 1787467 | 1787543 | 1787467 | ID=MS.gene40480.t1.exon1;Parent=MS.gene40480.t1 |
| chr5.3 | CDS | 1787467 | 1787543 | 1787467 | ID=cds.MS.gene40480.t1;Parent=MS.gene40480.t1 |
| chr5.3 | exon | 1787629 | 1787906 | 1787629 | ID=MS.gene40480.t1.exon2;Parent=MS.gene40480.t1 |
| chr5.3 | CDS | 1787629 | 1787906 | 1787629 | ID=cds.MS.gene40480.t1;Parent=MS.gene40480.t1 |
| chr5.3 | exon | 1788004 | 1788180 | 1788004 | ID=MS.gene40480.t1.exon3;Parent=MS.gene40480.t1 |
| chr5.3 | CDS | 1788004 | 1788180 | 1788004 | ID=cds.MS.gene40480.t1;Parent=MS.gene40480.t1 |
| chr5.3 | exon | 1788313 | 1788896 | 1788313 | ID=MS.gene40480.t1.exon4;Parent=MS.gene40480.t1 |
| chr5.3 | CDS | 1788313 | 1788896 | 1788313 | ID=cds.MS.gene40480.t1;Parent=MS.gene40480.t1 |
| Gene Sequence |
| Protein sequence |
