Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40481.t1 | XP_003610767.1 | 97 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 2.40E-213 | 751.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40481.t1 | B9FSC8 | 77.5 | 364 | 80 | 1 | 7 | 370 | 2 | 363 | 1.3e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40481.t1 | G7K3S2 | 97.0 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 1.7e-213 | 751.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050354 | MS.gene40481 | 0.817512 | 3.17E-52 | -1.69E-46 |
| MS.gene050926 | MS.gene40481 | 0.842184 | 3.02E-58 | -1.69E-46 |
| MS.gene054435 | MS.gene40481 | 0.849991 | 2.27E-60 | -1.69E-46 |
| MS.gene054437 | MS.gene40481 | 0.838237 | 3.24E-57 | -1.69E-46 |
| MS.gene054447 | MS.gene40481 | 0.837688 | 4.48E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40481.t1 | MTR_5g006780 | 97.035 | 371 | 11 | 0 | 1 | 371 | 1 | 371 | 0.0 | 752 |
| MS.gene40481.t1 | MTR_5g006800 | 92.183 | 371 | 27 | 1 | 1 | 371 | 1 | 369 | 0.0 | 715 |
| MS.gene40481.t1 | MTR_5g006750 | 88.140 | 371 | 44 | 0 | 1 | 371 | 1 | 371 | 0.0 | 694 |
| MS.gene40481.t1 | MTR_5g006670 | 86.376 | 367 | 42 | 3 | 5 | 371 | 1 | 359 | 0.0 | 651 |
| MS.gene40481.t1 | MTR_5g006740 | 82.834 | 367 | 61 | 1 | 5 | 371 | 1 | 365 | 0.0 | 646 |
| MS.gene40481.t1 | MTR_5g006710 | 83.836 | 365 | 51 | 2 | 7 | 371 | 7 | 363 | 0.0 | 637 |
| MS.gene40481.t1 | MTR_5g008040 | 80.541 | 370 | 70 | 1 | 1 | 370 | 3 | 370 | 0.0 | 628 |
| MS.gene40481.t1 | MTR_5g006740 | 78.747 | 367 | 59 | 2 | 5 | 371 | 1 | 348 | 0.0 | 598 |
| MS.gene40481.t1 | MTR_5g006720 | 73.351 | 379 | 61 | 3 | 4 | 371 | 3 | 352 | 0.0 | 558 |
| MS.gene40481.t1 | MTR_3g115600 | 69.505 | 364 | 105 | 2 | 8 | 371 | 6 | 363 | 0.0 | 533 |
| MS.gene40481.t1 | MTR_4g125470 | 52.815 | 373 | 159 | 5 | 12 | 370 | 19 | 388 | 2.31e-138 | 400 |
| MS.gene40481.t1 | MTR_5g006730 | 77.311 | 119 | 25 | 1 | 1 | 119 | 1 | 117 | 1.09e-59 | 189 |
| MS.gene40481.t1 | MTR_3g096570 | 73.494 | 83 | 18 | 2 | 173 | 254 | 3 | 82 | 3.81e-32 | 122 |
| MS.gene40481.t1 | MTR_3g096562 | 67.045 | 88 | 26 | 1 | 167 | 254 | 162 | 246 | 3.00e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40481.t1 | AT1G76690 | 76.550 | 371 | 85 | 1 | 1 | 371 | 3 | 371 | 0.0 | 603 |
| MS.gene40481.t1 | AT1G76680 | 77.135 | 363 | 81 | 1 | 9 | 371 | 9 | 369 | 0.0 | 596 |
| MS.gene40481.t1 | AT1G76680 | 72.165 | 388 | 81 | 2 | 9 | 371 | 9 | 394 | 0.0 | 582 |
| MS.gene40481.t1 | AT1G09400 | 68.976 | 332 | 95 | 2 | 18 | 349 | 1 | 324 | 1.25e-174 | 489 |
| MS.gene40481.t1 | AT1G09400 | 70.741 | 270 | 73 | 1 | 80 | 349 | 2 | 265 | 3.45e-144 | 409 |
| MS.gene40481.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene40481.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene40481.t1 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 6.30e-136 | 393 |
| MS.gene40481.t1 | AT1G17990 | 70.385 | 260 | 70 | 3 | 9 | 268 | 6 | 258 | 4.61e-135 | 386 |
| MS.gene40481.t1 | AT1G18020 | 70.385 | 260 | 70 | 3 | 9 | 268 | 6 | 258 | 4.61e-135 | 386 |
| MS.gene40481.t1 | AT1G17990 | 67.308 | 260 | 70 | 4 | 9 | 268 | 6 | 250 | 2.51e-126 | 364 |
Find 108 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTACTCCTTACAAAA+TGG | 0.186312 | 5.3:+1805851 | MS.gene40481:CDS |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5.3:-1807166 | None:intergenic |
| GTTGGAAGAGTTTCTGATTC+TGG | 0.251518 | 5.3:+1806234 | MS.gene40481:CDS |
| TAACGAATTGGGACTTTATA+TGG | 0.259709 | 5.3:+1806919 | MS.gene40481:CDS |
| TACATTTCTGATCCAGTTCT+AGG | 0.288195 | 5.3:+1807229 | MS.gene40481:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5.3:+1805966 | MS.gene40481:intron |
| GTCAATGCCCTCAATAAATA+TGG | 0.304167 | 5.3:+1806941 | MS.gene40481:CDS |
| AAAGGCACTTTCATGGTTGC+AGG | 0.311740 | 5.3:+1807058 | MS.gene40481:CDS |
| CTCCTCTGAACAAGTATAAC+AGG | 0.317873 | 5.3:+1807197 | MS.gene40481:CDS |
| CTCATCGGCACAAGGCTGTC+GGG | 0.347385 | 5.3:-1807025 | None:intergenic |
| ATCCAGACACGCCAGGTATA+TGG | 0.350535 | 5.3:+1806127 | MS.gene40481:CDS |
| GTCCATATACCTGGCGTGTC+TGG | 0.353329 | 5.3:-1806129 | None:intergenic |
| TCAATGCCATAGCTGAAAAC+AGG | 0.384447 | 5.3:+1807104 | MS.gene40481:CDS |
| AGACTCCAACCCTAACGAAT+TGG | 0.384935 | 5.3:+1806907 | MS.gene40481:CDS |
| GGCCTTCAAAGGCACTTTCA+TGG | 0.385984 | 5.3:+1807051 | MS.gene40481:CDS |
| AAACCATTACTTCGAATTTG+TGG | 0.394649 | 5.3:-1806418 | None:intergenic |
| CCAGTTTCTTCATTCAAGAA+AGG | 0.397020 | 5.3:-1807266 | None:intergenic |
| TGGTATTCTTTACTGTCATA+TGG | 0.399133 | 5.3:+1806961 | MS.gene40481:CDS |
| CTTCTTACTCCTTACAAAAT+GGG | 0.401056 | 5.3:+1805852 | MS.gene40481:CDS |
| ATATAAAGTCCCAATTCGTT+AGG | 0.406105 | 5.3:-1806917 | None:intergenic |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5.3:-1807175 | None:intergenic |
| GAGATAGGAGCTGATAAAGT+TGG | 0.416753 | 5.3:+1806845 | MS.gene40481:CDS |
| GACTCCAACCCTAACGAATT+GGG | 0.419325 | 5.3:+1806908 | MS.gene40481:CDS |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5.3:+1806799 | MS.gene40481:CDS |
| AGGGCAGACCTTGTTGTCTA+TGG | 0.429742 | 5.3:+1807124 | MS.gene40481:CDS |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5.3:-1806463 | None:intergenic |
| AACCATGAAAGTGCCTTTGA+AGG | 0.438354 | 5.3:-1807053 | None:intergenic |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5.3:-1806949 | None:intergenic |
| GTGCAAATTGCAGGATTTGA+TGG | 0.444981 | 5.3:+1806683 | MS.gene40481:intron |
| GCAAATTCGATCTATCTCAT+AGG | 0.451023 | 5.3:+1805874 | MS.gene40481:CDS |
| CAGTTTCTTCATTCAAGAAA+GGG | 0.456188 | 5.3:-1807265 | None:intergenic |
| CTAAAGAGCACGTCGAGGCT+TGG | 0.460997 | 5.3:+1806151 | MS.gene40481:CDS |
| GCATGAACAGCATCCACAAT+GGG | 0.464445 | 5.3:-1806177 | None:intergenic |
| GACTTATCTGTAGATGATAT+TGG | 0.464557 | 5.3:-1806388 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5.3:+1806764 | MS.gene40481:CDS |
| CATTCTGCATATTCTGCAAA+AGG | 0.473703 | 5.3:-1806881 | None:intergenic |
| TCTCATCGGCACAAGGCTGT+CGG | 0.479067 | 5.3:-1807026 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.479079 | 5.3:+1806698 | MS.gene40481:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5.3:-1807241 | None:intergenic |
| CGCAATCAAGTGAAAATGGC+TGG | 0.482183 | 5.3:+1805804 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.483228 | 5.3:-1806091 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.488883 | 5.3:+1807030 | MS.gene40481:CDS |
| GTTGAAATCCATGGGGCTCA+TGG | 0.498562 | 5.3:+1806707 | MS.gene40481:CDS |
| GATATTGGTGCCTGTCCATT+CGG | 0.502015 | 5.3:-1806373 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.3:-1806024 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.502113 | 5.3:+1806684 | MS.gene40481:intron |
| CAGAGAGCCACCGGCTCTAA+CGG | 0.506975 | 5.3:+1806054 | MS.gene40481:CDS |
| ACACCACAAATTCGAAGTAA+TGG | 0.507759 | 5.3:+1806415 | MS.gene40481:CDS |
| CTCACAAGACAAAGATCCTA+TGG | 0.508545 | 5.3:+1805994 | MS.gene40481:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.515388 | 5.3:-1806948 | None:intergenic |
| ATGCCAAATCTGACAAAAGA+AGG | 0.517640 | 5.3:-1806211 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.518438 | 5.3:+1806830 | MS.gene40481:CDS |
| TCATCGGCACAAGGCTGTCG+GGG | 0.521557 | 5.3:-1807024 | None:intergenic |
| TATAAAGTCCCAATTCGTTA+GGG | 0.522588 | 5.3:-1806916 | None:intergenic |
| GTAAGGAGTAAGAAGAGGAA+TGG | 0.526420 | 5.3:-1805844 | None:intergenic |
| TGGCTCTCTGTGAATAATAG+AGG | 0.529112 | 5.3:-1806041 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5.3:+1806789 | MS.gene40481:CDS |
| TTGATGGGGTTGAAATCCAT+GGG | 0.529612 | 5.3:+1806699 | MS.gene40481:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.3:-1806733 | None:intergenic |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5.3:-1806793 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5.3:-1806460 | None:intergenic |
| AAGTCCCAATTCGTTAGGGT+TGG | 0.539732 | 5.3:-1806912 | None:intergenic |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5.3:+1806455 | MS.gene40481:CDS |
| ACTTGCTGCTAGAAATGCTA+TGG | 0.544349 | 5.3:+1806513 | MS.gene40481:CDS |
| GTGGATGCTGTTCATGCTAA+AGG | 0.544472 | 5.3:+1806183 | MS.gene40481:CDS |
| GCTAGAAATGCTATGGAAGC+TGG | 0.548470 | 5.3:+1806520 | MS.gene40481:CDS |
| CAAGGGTATCCAGACACGCC+AGG | 0.555989 | 5.3:+1806120 | MS.gene40481:CDS |
| GGTGTCTCTGACACCGCTCA+AGG | 0.561959 | 5.3:+1806102 | MS.gene40481:CDS |
| AGTTTATCAGCCGAATGGAC+AGG | 0.564367 | 5.3:+1806363 | MS.gene40481:intron |
| GAGAAGACCTCCGTTAGAGC+CGG | 0.566754 | 5.3:-1806064 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5.3:-1807040 | None:intergenic |
| GGAGGTTACGACCGACATGA+TGG | 0.569456 | 5.3:+1807079 | MS.gene40481:CDS |
| CTTCTCATAACCGAAGCTAC+CGG | 0.572746 | 5.3:+1806081 | MS.gene40481:CDS |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5.3:-1807033 | None:intergenic |
| TATTATTCACAGAGAGCCAC+CGG | 0.583608 | 5.3:+1806045 | MS.gene40481:CDS |
| TCAACAGTTTATCAGCCGAA+TGG | 0.583793 | 5.3:+1806358 | MS.gene40481:intron |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5.3:+1807040 | MS.gene40481:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.585344 | 5.3:-1806138 | None:intergenic |
| AGGTTGTGGAACGTTGCCAT+AGG | 0.592868 | 5.3:-1806010 | None:intergenic |
| GGCACTTTCATGGTTGCAGG+AGG | 0.593746 | 5.3:+1807061 | MS.gene40481:CDS |
| TTTGCAGAATATGCAGAATG+TGG | 0.598992 | 5.3:+1806884 | MS.gene40481:CDS |
| AAGACCTCCGTTAGAGCCGG+TGG | 0.607283 | 5.3:-1806061 | None:intergenic |
| GAGGTTACGACCGACATGAT+GGG | 0.607847 | 5.3:+1807080 | MS.gene40481:CDS |
| TAGGATCTTTGTCTTGTGAG+TGG | 0.610235 | 5.3:-1805991 | None:intergenic |
| AGTTTCTTCATTCAAGAAAG+GGG | 0.611551 | 5.3:-1807264 | None:intergenic |
| TCCCTGTTATACTTGTTCAG+AGG | 0.614414 | 5.3:-1807199 | None:intergenic |
| GTGTCTCTGACACCGCTCAA+GGG | 0.616121 | 5.3:+1806103 | MS.gene40481:CDS |
| CGAGGCTTGGAAACCCATTG+TGG | 0.618914 | 5.3:+1806164 | MS.gene40481:CDS |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5.3:-1806802 | None:intergenic |
| CAATGCCATAGCTGAAAACA+GGG | 0.621098 | 5.3:+1807105 | MS.gene40481:CDS |
| TATTCTTTACTGTCATATGG+TGG | 0.623581 | 5.3:+1806964 | MS.gene40481:CDS |
| GTAGGTAGCCATGAGCCCCA+TGG | 0.625089 | 5.3:-1806715 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5.3:-1806792 | None:intergenic |
| AGCATGAACAGCATCCACAA+TGG | 0.632785 | 5.3:-1806178 | None:intergenic |
| TTGAGCGGTGTCAGAGACAC+CGG | 0.633714 | 5.3:-1806100 | None:intergenic |
| GAACCAAGAATGAAAACTGT+TGG | 0.645257 | 5.3:+1806986 | MS.gene40481:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5.3:+1806767 | MS.gene40481:CDS |
| AGAGCCACCGGCTCTAACGG+AGG | 0.647688 | 5.3:+1806057 | MS.gene40481:CDS |
| TGGCATTGATCCCATCATGT+CGG | 0.655421 | 5.3:-1807090 | None:intergenic |
| GCAAATTGCAGGATTTGATG+GGG | 0.659323 | 5.3:+1806685 | MS.gene40481:intron |
| TCCTCTGAACAAGTATAACA+GGG | 0.662663 | 5.3:+1807198 | MS.gene40481:CDS |
| ACAAACGACCATAGACAACA+AGG | 0.681842 | 5.3:-1807132 | None:intergenic |
| TTGCAAAATTCACACCACCA+AGG | 0.704294 | 5.3:+1806446 | MS.gene40481:CDS |
| CGTGTCTGGATACCCTTGAG+CGG | 0.705121 | 5.3:-1806115 | None:intergenic |
| GAATAATAGAGGATAGCATG+AGG | 0.726209 | 5.3:-1806030 | None:intergenic |
| TGATGGGGTTGAAATCCATG+GGG | 0.726824 | 5.3:+1806700 | MS.gene40481:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.740755 | 5.3:+1806449 | MS.gene40481:CDS |
| ATGGACTAAAGAGCACGTCG+AGG | 0.748737 | 5.3:+1806146 | MS.gene40481:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTGAATAATTTTTTATTT+TGG | - | chr5.3:1806573-1806592 | None:intergenic | 10.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.3:1806952-1806971 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.3:1806951-1806970 | None:intergenic | 20.0% |
| !! | ATAAACTGTTGAAAATAACA+TGG | - | chr5.3:1806350-1806369 | None:intergenic | 20.0% |
| !! | TATGAACATATGTGTATAAT+AGG | - | chr5.3:1806288-1806307 | None:intergenic | 20.0% |
| !! | TTGAAAATAACATGGAAAAT+GGG | - | chr5.3:1806342-1806361 | None:intergenic | 20.0% |
| ! | GTTGAAAATAACATGGAAAA+TGG | - | chr5.3:1806343-1806362 | None:intergenic | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5.3:1805966-1805985 | MS.gene40481:intron | 25.0% |
| AAACCATTACTTCGAATTTG+TGG | - | chr5.3:1806421-1806440 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5.3:1806764-1806783 | MS.gene40481:CDS | 30.0% | |
| ATATAAAGTCCCAATTCGTT+AGG | - | chr5.3:1806920-1806939 | None:intergenic | 30.0% | |
| ATTATGCAACATACTAACTG+TGG | + | chr5.3:1806661-1806680 | MS.gene40481:intron | 30.0% | |
| CTTCTTACTCCTTACAAAAT+GGG | + | chr5.3:1805852-1805871 | MS.gene40481:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.3:1806736-1806755 | None:intergenic | 30.0% | |
| GACTTATCTGTAGATGATAT+TGG | - | chr5.3:1806391-1806410 | None:intergenic | 30.0% | |
| TAACGAATTGGGACTTTATA+TGG | + | chr5.3:1806919-1806938 | MS.gene40481:CDS | 30.0% | |
| TATAAAGTCCCAATTCGTTA+GGG | - | chr5.3:1806919-1806938 | None:intergenic | 30.0% | |
| TATTCTTTACTGTCATATGG+TGG | + | chr5.3:1806964-1806983 | MS.gene40481:CDS | 30.0% | |
| TCTTCTTACTCCTTACAAAA+TGG | + | chr5.3:1805851-1805870 | MS.gene40481:CDS | 30.0% | |
| TGGTATTCTTTACTGTCATA+TGG | + | chr5.3:1806961-1806980 | MS.gene40481:CDS | 30.0% | |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5.3:1805852-1805871 | None:intergenic | 30.0% |
| !! | AGATCTTTTTGTTGCTTCAA+AGG | + | chr5.3:1806620-1806639 | MS.gene40481:intron | 30.0% |
| !! | GATCTTTTTGTTGCTTCAAA+GGG | + | chr5.3:1806621-1806640 | MS.gene40481:intron | 30.0% |
| ACACCACAAATTCGAAGTAA+TGG | + | chr5.3:1806415-1806434 | MS.gene40481:CDS | 35.0% | |
| ATGCCAAATCTGACAAAAGA+AGG | - | chr5.3:1806214-1806233 | None:intergenic | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5.3:1806884-1806903 | None:intergenic | 35.0% | |
| GAACCAAGAATGAAAACTGT+TGG | + | chr5.3:1806986-1807005 | MS.gene40481:CDS | 35.0% | |
| GAATAATAGAGGATAGCATG+AGG | - | chr5.3:1806033-1806052 | None:intergenic | 35.0% | |
| GCAAATTCGATCTATCTCAT+AGG | + | chr5.3:1805874-1805893 | MS.gene40481:CDS | 35.0% | |
| GTCAATGCCCTCAATAAATA+TGG | + | chr5.3:1806941-1806960 | MS.gene40481:CDS | 35.0% | |
| TACATTTCTGATCCAGTTCT+AGG | + | chr5.3:1807229-1807248 | MS.gene40481:CDS | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | chr5.3:1807244-1807263 | None:intergenic | 35.0% | |
| TCCTCTGAACAAGTATAACA+GGG | + | chr5.3:1807198-1807217 | MS.gene40481:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.3:1806684-1806703 | MS.gene40481:intron | 35.0% | |
| TTTGCAGAATATGCAGAATG+TGG | + | chr5.3:1806884-1806903 | MS.gene40481:CDS | 35.0% | |
| ! | CTACCTTCTTTTGTCAGATT+TGG | + | chr5.3:1806208-1806227 | MS.gene40481:CDS | 35.0% |
| ! | TCACCAACAGTTTTCATTCT+TGG | - | chr5.3:1806992-1807011 | None:intergenic | 35.0% |
| ! | TCGAATTTGCCCATTTTGTA+AGG | - | chr5.3:1805864-1805883 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr5.3:1806216-1806235 | MS.gene40481:CDS | 35.0% |
| ACAAACGACCATAGACAACA+AGG | - | chr5.3:1807135-1807154 | None:intergenic | 40.0% | |
| CAATGCCATAGCTGAAAACA+GGG | + | chr5.3:1807105-1807124 | MS.gene40481:CDS | 40.0% | |
| CTCACAAGACAAAGATCCTA+TGG | + | chr5.3:1805994-1806013 | MS.gene40481:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr5.3:1807197-1807216 | MS.gene40481:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.3:1806830-1806849 | MS.gene40481:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.3:1806767-1806786 | MS.gene40481:CDS | 40.0% | |
| GAGATAGGAGCTGATAAAGT+TGG | + | chr5.3:1806845-1806864 | MS.gene40481:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.3:1807169-1807188 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.3:1806685-1806704 | MS.gene40481:intron | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | chr5.3:1807178-1807197 | None:intergenic | 40.0% | |
| GTAAGGAGTAAGAAGAGGAA+TGG | - | chr5.3:1805847-1805866 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.3:1806683-1806702 | MS.gene40481:intron | 40.0% | |
| GTTGGAAGAGTTTCTGATTC+TGG | + | chr5.3:1806234-1806253 | MS.gene40481:CDS | 40.0% | |
| TAGGATCTTTGTCTTGTGAG+TGG | - | chr5.3:1805994-1806013 | None:intergenic | 40.0% | |
| TATTATTCACAGAGAGCCAC+CGG | + | chr5.3:1806045-1806064 | MS.gene40481:CDS | 40.0% | |
| TCAACAGTTTATCAGCCGAA+TGG | + | chr5.3:1806358-1806377 | MS.gene40481:intron | 40.0% | |
| TCAATGCCATAGCTGAAAAC+AGG | + | chr5.3:1807104-1807123 | MS.gene40481:CDS | 40.0% | |
| TCCCTGTTATACTTGTTCAG+AGG | - | chr5.3:1807202-1807221 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.3:1806141-1806160 | None:intergenic | 40.0% | |
| TGGCTCTCTGTGAATAATAG+AGG | - | chr5.3:1806044-1806063 | None:intergenic | 40.0% | |
| TTGATGGGGTTGAAATCCAT+GGG | + | chr5.3:1806699-1806718 | MS.gene40481:CDS | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | chr5.3:1806446-1806465 | MS.gene40481:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.3:1806698-1806717 | MS.gene40481:CDS | 40.0% | |
| ! | ACTTGCTGCTAGAAATGCTA+TGG | + | chr5.3:1806513-1806532 | MS.gene40481:CDS | 40.0% |
| !! | AACCATGAAAGTGCCTTTGA+AGG | - | chr5.3:1807056-1807075 | None:intergenic | 40.0% |
| AAACCGACAACGGTTCTCAA+GGG | - | chr5.3:1806795-1806814 | None:intergenic | 45.0% | |
| AAGTCCCAATTCGTTAGGGT+TGG | - | chr5.3:1806915-1806934 | None:intergenic | 45.0% | |
| AGACTCCAACCCTAACGAAT+TGG | + | chr5.3:1806907-1806926 | MS.gene40481:CDS | 45.0% | |
| AGCATGAACAGCATCCACAA+TGG | - | chr5.3:1806181-1806200 | None:intergenic | 45.0% | |
| AGTTTATCAGCCGAATGGAC+AGG | + | chr5.3:1806363-1806382 | MS.gene40481:intron | 45.0% | |
| CAAAATTCACACCACCAAGG+CGG | + | chr5.3:1806449-1806468 | MS.gene40481:CDS | 45.0% | |
| CTAACTGTGGTGCAAATTGC+AGG | + | chr5.3:1806674-1806693 | MS.gene40481:intron | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | chr5.3:1806805-1806824 | None:intergenic | 45.0% | |
| CTTCTCATAACCGAAGCTAC+CGG | + | chr5.3:1806081-1806100 | MS.gene40481:CDS | 45.0% | |
| GACTCCAACCCTAACGAATT+GGG | + | chr5.3:1806908-1806927 | MS.gene40481:CDS | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5.3:1806180-1806199 | None:intergenic | 45.0% | |
| GCTAGAAATGCTATGGAAGC+TGG | + | chr5.3:1806520-1806539 | MS.gene40481:CDS | 45.0% | |
| GTGGATGCTGTTCATGCTAA+AGG | + | chr5.3:1806183-1806202 | MS.gene40481:CDS | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.3:1806027-1806046 | None:intergenic | 45.0% | |
| TGATGGGGTTGAAATCCATG+GGG | + | chr5.3:1806700-1806719 | MS.gene40481:CDS | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5.3:1807043-1807062 | None:intergenic | 45.0% |
| ! | GATATTGGTGCCTGTCCATT+CGG | - | chr5.3:1806376-1806395 | None:intergenic | 45.0% |
| !! | AAAGGCACTTTCATGGTTGC+AGG | + | chr5.3:1807058-1807077 | MS.gene40481:CDS | 45.0% |
| !! | TGGCATTGATCCCATCATGT+CGG | - | chr5.3:1807093-1807112 | None:intergenic | 45.0% |
| !! | TTGTTGCTTCAAAGGGCACT+AGG | + | chr5.3:1806628-1806647 | MS.gene40481:intron | 45.0% |
| AGGTTGTGGAACGTTGCCAT+AGG | - | chr5.3:1806013-1806032 | None:intergenic | 50.0% | |
| ATCCAGACACGCCAGGTATA+TGG | + | chr5.3:1806127-1806146 | MS.gene40481:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | chr5.3:1806796-1806815 | None:intergenic | 50.0% | |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5.3:1807040-1807059 | MS.gene40481:CDS | 50.0% | |
| GAGGTTACGACCGACATGAT+GGG | + | chr5.3:1807080-1807099 | MS.gene40481:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.3:1806789-1806808 | MS.gene40481:CDS | 50.0% | |
| GTTGAAATCCATGGGGCTCA+TGG | + | chr5.3:1806707-1806726 | MS.gene40481:CDS | 50.0% | |
| ! | AGGGCAGACCTTGTTGTCTA+TGG | + | chr5.3:1807124-1807143 | MS.gene40481:CDS | 50.0% |
| ! | ATGGACTAAAGAGCACGTCG+AGG | + | chr5.3:1806146-1806165 | MS.gene40481:CDS | 50.0% |
| ! | GTCTGCCCTGTTTTCAGCTA+TGG | - | chr5.3:1807113-1807132 | None:intergenic | 50.0% |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | chr5.3:1806799-1806818 | MS.gene40481:CDS | 50.0% |
| !! | GGCCTTCAAAGGCACTTTCA+TGG | + | chr5.3:1807051-1807070 | MS.gene40481:CDS | 50.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5.3:1807036-1807055 | None:intergenic | 55.0% | |
| CGAGGCTTGGAAACCCATTG+TGG | + | chr5.3:1806164-1806183 | MS.gene40481:CDS | 55.0% | |
| CGTGTCTGGATACCCTTGAG+CGG | - | chr5.3:1806118-1806137 | None:intergenic | 55.0% | |
| GAGAAGACCTCCGTTAGAGC+CGG | - | chr5.3:1806067-1806086 | None:intergenic | 55.0% | |
| GGAGGTTACGACCGACATGA+TGG | + | chr5.3:1807079-1807098 | MS.gene40481:CDS | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5.3:1807061-1807080 | MS.gene40481:CDS | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | chr5.3:1806094-1806113 | None:intergenic | 55.0% | |
| GTCCATATACCTGGCGTGTC+TGG | - | chr5.3:1806132-1806151 | None:intergenic | 55.0% | |
| GTGTCTCTGACACCGCTCAA+GGG | + | chr5.3:1806103-1806122 | MS.gene40481:CDS | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | chr5.3:1806466-1806485 | None:intergenic | 55.0% | |
| TCTCATCGGCACAAGGCTGT+CGG | - | chr5.3:1807029-1807048 | None:intergenic | 55.0% | |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5.3:1807030-1807049 | MS.gene40481:CDS | 55.0% |
| ! | CTAAAGAGCACGTCGAGGCT+TGG | + | chr5.3:1806151-1806170 | MS.gene40481:CDS | 55.0% |
| ! | TTGAGCGGTGTCAGAGACAC+CGG | - | chr5.3:1806103-1806122 | None:intergenic | 55.0% |
| AAGACCTCCGTTAGAGCCGG+TGG | - | chr5.3:1806064-1806083 | None:intergenic | 60.0% | |
| CTCATCGGCACAAGGCTGTC+GGG | - | chr5.3:1807028-1807047 | None:intergenic | 60.0% | |
| GGTGTCTCTGACACCGCTCA+AGG | + | chr5.3:1806102-1806121 | MS.gene40481:CDS | 60.0% | |
| GTAGGTAGCCATGAGCCCCA+TGG | - | chr5.3:1806718-1806737 | None:intergenic | 60.0% | |
| TCACACCACCAAGGCGGCTA+AGG | + | chr5.3:1806455-1806474 | MS.gene40481:CDS | 60.0% | |
| TCATCGGCACAAGGCTGTCG+GGG | - | chr5.3:1807027-1807046 | None:intergenic | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | chr5.3:1806463-1806482 | None:intergenic | 60.0% | |
| !! | CAAGGGTATCCAGACACGCC+AGG | + | chr5.3:1806120-1806139 | MS.gene40481:CDS | 60.0% |
| !! | CAGAGAGCCACCGGCTCTAA+CGG | + | chr5.3:1806054-1806073 | MS.gene40481:CDS | 60.0% |
| !! | AGAGCCACCGGCTCTAACGG+AGG | + | chr5.3:1806057-1806076 | MS.gene40481:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1805819 | 1807279 | 1805819 | ID=MS.gene40481 |
| chr5.3 | mRNA | 1805819 | 1807279 | 1805819 | ID=MS.gene40481.t1;Parent=MS.gene40481 |
| chr5.3 | exon | 1805819 | 1805895 | 1805819 | ID=MS.gene40481.t1.exon1;Parent=MS.gene40481.t1 |
| chr5.3 | CDS | 1805819 | 1805895 | 1805819 | ID=cds.MS.gene40481.t1;Parent=MS.gene40481.t1 |
| chr5.3 | exon | 1805978 | 1806255 | 1805978 | ID=MS.gene40481.t1.exon2;Parent=MS.gene40481.t1 |
| chr5.3 | CDS | 1805978 | 1806255 | 1805978 | ID=cds.MS.gene40481.t1;Parent=MS.gene40481.t1 |
| chr5.3 | exon | 1806365 | 1806541 | 1806365 | ID=MS.gene40481.t1.exon3;Parent=MS.gene40481.t1 |
| chr5.3 | CDS | 1806365 | 1806541 | 1806365 | ID=cds.MS.gene40481.t1;Parent=MS.gene40481.t1 |
| chr5.3 | exon | 1806696 | 1807279 | 1806696 | ID=MS.gene40481.t1.exon4;Parent=MS.gene40481.t1 |
| chr5.3 | CDS | 1806696 | 1807279 | 1806696 | ID=cds.MS.gene40481.t1;Parent=MS.gene40481.t1 |
| Gene Sequence |
| Protein sequence |
