AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024840.t1 MTR_5g006670 93.036 359 22 1 1 356 1 359 0.0 696
MS.gene024840.t1 MTR_5g006710 88.983 354 36 1 6 356 10 363 0.0 658
MS.gene024840.t1 MTR_5g006780 85.831 367 41 4 1 356 5 371 0.0 640
MS.gene024840.t1 MTR_5g006800 84.022 363 49 2 3 356 7 369 0.0 630
MS.gene024840.t1 MTR_5g006740 81.918 365 57 3 1 356 1 365 0.0 621
MS.gene024840.t1 MTR_5g006750 80.654 367 60 3 1 356 5 371 0.0 614
MS.gene024840.t1 MTR_5g008040 78.022 364 71 2 1 355 7 370 0.0 595
MS.gene024840.t1 MTR_5g006740 78.729 362 57 4 1 356 1 348 0.0 581
MS.gene024840.t1 MTR_5g006720 71.277 376 61 4 1 356 4 352 0.0 526
MS.gene024840.t1 MTR_3g115600 69.382 356 104 2 6 356 8 363 0.0 521
MS.gene024840.t1 MTR_4g125470 54.595 370 146 4 8 355 19 388 1.90e-142 409
MS.gene024840.t1 MTR_5g006730 81.818 110 20 0 3 112 7 116 3.07e-61 193
MS.gene024840.t1 MTR_3g096570 80.282 71 14 0 162 232 8 78 1.50e-32 122
MS.gene024840.t1 MTR_3g096562 77.778 72 16 0 152 223 162 233 1.13e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024840.t1 AT1G76690 73.889 360 85 2 6 356 12 371 0.0 561
MS.gene024840.t1 AT1G76680 73.056 360 88 3 6 356 10 369 0.0 554
MS.gene024840.t1 AT1G76680 68.312 385 88 4 6 356 10 394 0.0 540
MS.gene024840.t1 AT1G09400 69.753 324 95 1 14 334 1 324 2.55e-177 495
MS.gene024840.t1 AT1G09400 71.212 264 73 1 74 334 2 265 1.26e-143 407
MS.gene024840.t1 AT2G06050 51.337 374 156 4 8 355 12 385 1.31e-136 394
MS.gene024840.t1 AT2G06050 51.337 374 156 4 8 355 12 385 1.31e-136 394
MS.gene024840.t1 AT2G06050 51.337 374 156 4 8 355 12 385 1.31e-136 394
MS.gene024840.t1 AT1G17990 71.032 252 69 2 6 253 7 258 7.93e-135 385
MS.gene024840.t1 AT1G18020 71.032 252 69 2 6 253 7 258 7.93e-135 385
MS.gene024840.t1 AT1G17990 67.857 252 69 3 6 253 7 250 3.61e-126 363

Find 86 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.203120 5.1:-1388293 None:intergenic
CAATGAATTGGGACTTTATA+TGG 0.208006 5.1:+1388046 MS.gene024840:CDS
AGGGCAGATCTTGTTGTTTA+TGG 0.218911 5.1:+1388251 MS.gene024840:CDS
TCAATGCTATAGCAGAAAAT+AGG 0.227212 5.1:+1388231 MS.gene024840:CDS
CTCCTCTTAACAAGTATAAT+AGG 0.228308 5.1:+1388324 MS.gene024840:CDS
CTTGCATTTCAGAGTTGTTT+TGG 0.229757 5.1:+1386830 MS.gene024840:intron
CTACATTCTTCTGTCAGATT+TGG 0.272259 5.1:+1387066 MS.gene024840:CDS
CTGAAGTCATTGACAATATC+AGG 0.283543 5.1:-1387615 None:intergenic
TATAAGAAGACCACCTTTAG+AGG 0.292988 5.1:-1386925 None:intergenic
TGATCCGGTTGTTGGTTATA+CGG 0.296277 5.1:+1388364 MS.gene024840:CDS
AACGGCACTTTCATGGTTGC+AGG 0.326217 5.1:+1388185 MS.gene024840:CDS
CTCATTGGCACCAGGCTGTA+AGG 0.342562 5.1:-1388152 None:intergenic
ATCCAGACACACCAGGTATA+TGG 0.345292 5.1:+1386985 MS.gene024840:CDS
CATATAAAGTCCCAATTCAT+TGG 0.351928 5.1:-1388045 None:intergenic
AGACTCCAATCCCAATGAAT+TGG 0.357975 5.1:+1388034 MS.gene024840:CDS
GGCTTTCAACGGCACTTTCA+TGG 0.358796 5.1:+1388178 MS.gene024840:CDS
TCCCTATTATACTTGTTAAG+AGG 0.369675 5.1:-1388326 None:intergenic
CTTTCTGCATATTGTGCAAA+AGG 0.371976 5.1:-1388008 None:intergenic
GCATTGAGAGCAAATCTCTT+TGG 0.376749 5.1:-1388302 None:intergenic
GTCCATATACCTGGTGTGTC+TGG 0.379392 5.1:-1386987 None:intergenic
TTTGATGGTGTTGAAATTCA+TGG 0.380570 5.1:+1387825 MS.gene024840:CDS
TCATTTGTCCCAAGCCTTCT+CGG 0.386908 5.1:-1387588 None:intergenic
TACATTTCTGATCCGGTTGT+TGG 0.398433 5.1:+1388356 MS.gene024840:CDS
GAGATAGGAGCAGAGAGAGT+TGG 0.399554 5.1:+1387972 MS.gene024840:CDS
TTCTCGCCACCGAGAAGGCT+TGG 0.405740 5.1:+1387579 MS.gene024840:CDS
TCCTCTTAACAAGTATAATA+GGG 0.406224 5.1:+1388325 MS.gene024840:CDS
TTGAAATTGCCCATCTTGTA+AGG 0.410446 5.1:-1386718 None:intergenic
AGGACCTTTGAGAGTAATAG+AGG 0.421466 5.1:-1386905 None:intergenic
GCAATTTCAATCTCTCTCAT+AGG 0.425449 5.1:+1386731 MS.gene024840:CDS
AACATTCTACATTTCTGATC+CGG 0.427062 5.1:+1388349 MS.gene024840:CDS
CAATGCTATAGCAGAAAATA+GGG 0.432026 5.1:+1388232 MS.gene024840:CDS
CAAATCGACATCGGTTCTCT+AGG 0.437051 5.1:-1387920 None:intergenic
ACAGAAGAATGTAGAACCTT+TGG 0.438653 5.1:-1387057 None:intergenic
GATATCGGTGCTTGTCCATT+CGG 0.438814 5.1:-1387516 None:intergenic
GACTCCAATCCCAATGAATT+GGG 0.447639 5.1:+1388035 MS.gene024840:CDS
TCTTATTACACCTTACAAGA+TGG 0.451798 5.1:+1386708 MS.gene024840:CDS
CCGTTGAAAGCCTTTCTCAT+TGG 0.453741 5.1:-1388167 None:intergenic
ATATAAAGTCCCAATTCATT+GGG 0.455839 5.1:-1388044 None:intergenic
AAGTCCCAATTCATTGGGAT+TGG 0.463512 5.1:-1388039 None:intergenic
ATTGTATTTATTGAGAGCAT+TGG 0.466555 5.1:-1388069 None:intergenic
CTTCTTATAGCTGAAGCTAC+TGG 0.479639 5.1:+1386939 MS.gene024840:CDS
TAAGGTGTAATAAGAGGAAT+GGG 0.482782 5.1:-1386700 None:intergenic
CTCACTAGAATAAGATCCTA+TGG 0.486036 5.1:+1386858 MS.gene024840:CDS
TCTCGCCACCGAGAAGGCTT+GGG 0.486835 5.1:+1387580 MS.gene024840:CDS
TAGAGGACAGCATGAGGTTG+AGG 0.488275 5.1:-1386888 None:intergenic
AAGCCTTTCTCATTGGCACC+AGG 0.488795 5.1:-1388160 None:intergenic
TCATTGGCACCAGGCTGTAA+GGG 0.490492 5.1:-1388151 None:intergenic
GCATGAACAGCATCTACAAT+GGG 0.496515 5.1:-1387035 None:intergenic
CAGCCTGGTGCCAATGAGAA+AGG 0.498444 5.1:+1388157 MS.gene024840:CDS
GAACCGATGTCGATTTGCAT+TGG 0.506354 5.1:+1387926 MS.gene024840:CDS
GTAAGGTGTAATAAGAGGAA+TGG 0.511089 5.1:-1386701 None:intergenic
CTGTCCTCTATTACTCTCAA+AGG 0.511507 5.1:+1386901 MS.gene024840:CDS
TTCTGTCAGATTTGGCATGT+TGG 0.513208 5.1:+1387074 MS.gene024840:CDS
CAATATTCTTTATTGTCACA+TGG 0.513287 5.1:+1388088 MS.gene024840:CDS
CTTATTACACCTTACAAGAT+GGG 0.515387 5.1:+1386709 MS.gene024840:CDS
GAAGCTGTTGTGAATGAGAT+AGG 0.516901 5.1:+1387957 MS.gene024840:CDS
GGAGGTTATGACAGACAAGA+TGG 0.517730 5.1:+1388206 MS.gene024840:CDS
ATCTTGTAAGGTGTAATAAG+AGG 0.519989 5.1:-1386706 None:intergenic
GACTTGTCTGTAGAAGATAT+CGG 0.525444 5.1:-1387531 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.528089 5.1:+1387645 MS.gene024840:CDS
TACTCTCAAAGGTCCTCTAA+AGG 0.530036 5.1:+1386912 MS.gene024840:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5.1:-1387860 None:intergenic
AATTGAAAGCCCTTACAGCC+TGG 0.535825 5.1:+1388142 MS.gene024840:CDS
GTAGATGCTGTTCATGCCAA+AGG 0.560999 5.1:+1387041 MS.gene024840:CDS
TAGTCCGTATAACCAACAAC+CGG 0.576852 5.1:-1388368 None:intergenic
AGCTTCAATAGCATTTCTTG+CGG 0.576970 5.1:-1387643 None:intergenic
AAATCGACATCGGTTCTCTA+GGG 0.579801 5.1:-1387919 None:intergenic
AATGACAGAACAGATGAATA+CGG 0.588235 5.1:+1387891 MS.gene024840:CDS
GGCATGAACAGCATCTACAA+TGG 0.589084 5.1:-1387036 None:intergenic
GTTGAAATTCATGGAGCTCA+TGG 0.595308 5.1:+1387834 MS.gene024840:CDS
CTAATGAGCAAGTTGAGGCA+TGG 0.595655 5.1:+1387009 MS.gene024840:CDS
CAAGGCTATCCAGACACACC+AGG 0.601781 5.1:+1386978 MS.gene024840:CDS
TGCTCATTAGTCCATATACC+TGG 0.603317 5.1:-1386996 None:intergenic
AGGTTGAGGAACTTTGCCAT+AGG 0.604983 5.1:-1386874 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.607719 5.1:+1386960 MS.gene024840:CDS
CCAATGAGAAAGGCTTTCAA+CGG 0.607890 5.1:+1388167 MS.gene024840:CDS
GGCACTTTCATGGTTGCAGG+AGG 0.608579 5.1:+1388188 MS.gene024840:CDS
GAGGTTATGACAGACAAGAT+GGG 0.609791 5.1:+1388207 MS.gene024840:CDS
TAGGATCTTATTCTAGTGAG+TGG 0.614903 5.1:-1386855 None:intergenic
TATTCTTTATTGTCACATGG+TGG 0.626954 5.1:+1388091 MS.gene024840:CDS
TCTCAAAGGTCCTCTAAAGG+TGG 0.638482 5.1:+1386915 MS.gene024840:CDS
ATGGACTAATGAGCAAGTTG+AGG 0.645395 5.1:+1387004 MS.gene024840:CDS
GAGTAATAGAGGACAGCATG+AGG 0.651668 5.1:-1386894 None:intergenic
CTTCCAATGCAAATCGACAT+CGG 0.652380 5.1:-1387929 None:intergenic
TTTGTCCCAAGCCTTCTCGG+TGG 0.692595 5.1:-1387585 None:intergenic
GACAGAACAGATGAATACGG+TGG 0.702185 5.1:+1387894 MS.gene024840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATACTAAAAAAAATAA+CGG - chr5.1:1387372-1387391 None:intergenic 10.0%
!! AATAATCTTCAAATTATATG+AGG - chr5.1:1387129-1387148 None:intergenic 15.0%
!!! ATTGAAATTGAAAGTATAAT+AGG - chr5.1:1386759-1386778 None:intergenic 15.0%
!!! CTAAAAAAAATAACGGATTT+AGG - chr5.1:1387365-1387384 None:intergenic 20.0%
!!! TCAGTATTTGATTTTATTCT+TGG - chr5.1:1388119-1388138 None:intergenic 20.0%
!!! TTTAGTATTTCTACTACTAA+GGG + chr5.1:1387380-1387399 MS.gene024840:intron 20.0%
!!! TTTTAGTATTTCTACTACTA+AGG + chr5.1:1387379-1387398 MS.gene024840:intron 20.0%
! ATATAAAGTCCCAATTCATT+GGG - chr5.1:1388047-1388066 None:intergenic 25.0%
! CAATATTCTTTATTGTCACA+TGG + chr5.1:1388088-1388107 MS.gene024840:CDS 25.0%
! TCCTCTTAACAAGTATAATA+GGG + chr5.1:1388325-1388344 MS.gene024840:CDS 25.0%
! TCGAGATTGTTTATTATTGT+TGG + chr5.1:1387154-1387173 MS.gene024840:intron 25.0%
!! ATTGTATTTATTGAGAGCAT+TGG - chr5.1:1388072-1388091 None:intergenic 25.0%
!! TTAGTATTTCTACTACTAAG+GGG + chr5.1:1387381-1387400 MS.gene024840:intron 25.0%
!!! AAGACTATTTGTTGCTTTAA+AGG + chr5.1:1387746-1387765 MS.gene024840:intron 25.0%
!!! AGACTATTTGTTGCTTTAAA+GGG + chr5.1:1387747-1387766 MS.gene024840:intron 25.0%
!!! ATTTAGGTTGTGTATAATCA+CGG - chr5.1:1387349-1387368 None:intergenic 25.0%
AAAACCTGTTGAGAATAACA+TGG - chr5.1:1387493-1387512 None:intergenic 30.0%
AACATTCTACATTTCTGATC+CGG + chr5.1:1388349-1388368 MS.gene024840:CDS 30.0%
AATGACAGAACAGATGAATA+CGG + chr5.1:1387891-1387910 MS.gene024840:CDS 30.0%
ATCTTGTAAGGTGTAATAAG+AGG - chr5.1:1386709-1386728 None:intergenic 30.0%
CAATGAATTGGGACTTTATA+TGG + chr5.1:1388046-1388065 MS.gene024840:CDS 30.0%
CAATGCTATAGCAGAAAATA+GGG + chr5.1:1388232-1388251 MS.gene024840:CDS 30.0%
CATATAAAGTCCCAATTCAT+TGG - chr5.1:1388048-1388067 None:intergenic 30.0%
CTCCTCTTAACAAGTATAAT+AGG + chr5.1:1388324-1388343 MS.gene024840:CDS 30.0%
CTTATTACACCTTACAAGAT+GGG + chr5.1:1386709-1386728 MS.gene024840:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.1:1387863-1387882 None:intergenic 30.0%
TAAGGTGTAATAAGAGGAAT+GGG - chr5.1:1386703-1386722 None:intergenic 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5.1:1388091-1388110 MS.gene024840:CDS 30.0%
TCAATGCTATAGCAGAAAAT+AGG + chr5.1:1388231-1388250 MS.gene024840:CDS 30.0%
TCTTATTACACCTTACAAGA+TGG + chr5.1:1386708-1386727 MS.gene024840:CDS 30.0%
! TCCCTATTATACTTGTTAAG+AGG - chr5.1:1388329-1388348 None:intergenic 30.0%
!! TGATTGAAGTACTTTTCGTT+TGG - chr5.1:1387698-1387717 None:intergenic 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG + chr5.1:1387825-1387844 MS.gene024840:CDS 30.0%
ACAGAAGAATGTAGAACCTT+TGG - chr5.1:1387060-1387079 None:intergenic 35.0%
ACTAACTCAGTATGTCAACT+CGG + chr5.1:1387462-1387481 MS.gene024840:intron 35.0%
AGCTTCAATAGCATTTCTTG+CGG - chr5.1:1387646-1387665 None:intergenic 35.0%
ATGTCCATGTTATTCTCAAC+AGG + chr5.1:1387486-1387505 MS.gene024840:intron 35.0%
CAAAACTGTCCGATCAATAT+TGG - chr5.1:1387298-1387317 None:intergenic 35.0%
CTACATTCTTCTGTCAGATT+TGG + chr5.1:1387066-1387085 MS.gene024840:CDS 35.0%
CTCACTAGAATAAGATCCTA+TGG + chr5.1:1386858-1386877 MS.gene024840:CDS 35.0%
CTGAAGTCATTGACAATATC+AGG - chr5.1:1387618-1387637 None:intergenic 35.0%
CTTTCTGCATATTGTGCAAA+AGG - chr5.1:1388011-1388030 None:intergenic 35.0%
GACTTGTCTGTAGAAGATAT+CGG - chr5.1:1387534-1387553 None:intergenic 35.0%
GCAATTTCAATCTCTCTCAT+AGG + chr5.1:1386731-1386750 MS.gene024840:CDS 35.0%
GTAAGGTGTAATAAGAGGAA+TGG - chr5.1:1386704-1386723 None:intergenic 35.0%
TAGGATCTTATTCTAGTGAG+TGG - chr5.1:1386858-1386877 None:intergenic 35.0%
TATAAGAAGACCACCTTTAG+AGG - chr5.1:1386928-1386947 None:intergenic 35.0%
TTGAAATTGCCCATCTTGTA+AGG - chr5.1:1386721-1386740 None:intergenic 35.0%
! CTTGCATTTCAGAGTTGTTT+TGG + chr5.1:1386830-1386849 MS.gene024840:intron 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr5.1:1387810-1387829 MS.gene024840:intron 35.0%
AAGTCCCAATTCATTGGGAT+TGG - chr5.1:1388042-1388061 None:intergenic 40.0%
AGACTCCAATCCCAATGAAT+TGG + chr5.1:1388034-1388053 MS.gene024840:CDS 40.0%
CCAATGAGAAAGGCTTTCAA+CGG + chr5.1:1388167-1388186 MS.gene024840:CDS 40.0%
CCAGTCTGTCCAATATTGAT+CGG + chr5.1:1387286-1387305 MS.gene024840:intron 40.0%
CTAGACAATCGATCTTGATG+TGG - chr5.1:1387216-1387235 None:intergenic 40.0%
CTCAATGTGATGCAAATTGC+AGG + chr5.1:1387801-1387820 MS.gene024840:intron 40.0%
CTGTCCTCTATTACTCTCAA+AGG + chr5.1:1386901-1386920 MS.gene024840:CDS 40.0%
CTTCCAATGCAAATCGACAT+CGG - chr5.1:1387932-1387951 None:intergenic 40.0%
CTTCTTATAGCTGAAGCTAC+TGG + chr5.1:1386939-1386958 MS.gene024840:CDS 40.0%
GAAGCTGTTGTGAATGAGAT+AGG + chr5.1:1387957-1387976 MS.gene024840:CDS 40.0%
GACTCCAATCCCAATGAATT+GGG + chr5.1:1388035-1388054 MS.gene024840:CDS 40.0%
GAGGTTATGACAGACAAGAT+GGG + chr5.1:1388207-1388226 MS.gene024840:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.1:1388296-1388315 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.1:1387645-1387664 MS.gene024840:CDS 40.0%
GCATGAACAGCATCTACAAT+GGG - chr5.1:1387038-1387057 None:intergenic 40.0%
GCATTGAGAGCAAATCTCTT+TGG - chr5.1:1388305-1388324 None:intergenic 40.0%
GTTGAAATTCATGGAGCTCA+TGG + chr5.1:1387834-1387853 MS.gene024840:CDS 40.0%
TACATTTCTGATCCGGTTGT+TGG + chr5.1:1388356-1388375 MS.gene024840:CDS 40.0%
TACTCTCAAAGGTCCTCTAA+AGG + chr5.1:1386912-1386931 MS.gene024840:CDS 40.0%
TAGTCCGTATAACCAACAAC+CGG - chr5.1:1388371-1388390 None:intergenic 40.0%
TGCTCATTAGTCCATATACC+TGG - chr5.1:1386999-1387018 None:intergenic 40.0%
TTCTGTCAGATTTGGCATGT+TGG + chr5.1:1387074-1387093 MS.gene024840:CDS 40.0%
! AGGACCTTTGAGAGTAATAG+AGG - chr5.1:1386908-1386927 None:intergenic 40.0%
! ATGGACTAATGAGCAAGTTG+AGG + chr5.1:1387004-1387023 MS.gene024840:CDS 40.0%
! TGATCCGGTTGTTGGTTATA+CGG + chr5.1:1388364-1388383 MS.gene024840:CDS 40.0%
!! AAATCGACATCGGTTCTCTA+GGG - chr5.1:1387922-1387941 None:intergenic 40.0%
!! AGGGCAGATCTTGTTGTTTA+TGG + chr5.1:1388251-1388270 MS.gene024840:CDS 40.0%
!! CAACTCTGAAATGCAAGACA+AGG - chr5.1:1386827-1386846 None:intergenic 40.0%
!! TTGTTGCTTTAAAGGGCACA+AGG + chr5.1:1387754-1387773 MS.gene024840:intron 40.0%
AAAAATTCTCGCCACCGAGA+AGG + chr5.1:1387574-1387593 MS.gene024840:CDS 45.0%
AATTGAAAGCCCTTACAGCC+TGG + chr5.1:1388142-1388161 MS.gene024840:CDS 45.0%
AGGTTGAGGAACTTTGCCAT+AGG - chr5.1:1386877-1386896 None:intergenic 45.0%
ATCCAGACACACCAGGTATA+TGG + chr5.1:1386985-1387004 MS.gene024840:CDS 45.0%
CCGATCAATATTGGACAGAC+TGG - chr5.1:1387289-1387308 None:intergenic 45.0%
CCGTTGAAAGCCTTTCTCAT+TGG - chr5.1:1388170-1388189 None:intergenic 45.0%
GACAGAACAGATGAATACGG+TGG + chr5.1:1387894-1387913 MS.gene024840:CDS 45.0%
GAGTAATAGAGGACAGCATG+AGG - chr5.1:1386897-1386916 None:intergenic 45.0%
GGAGGTTATGACAGACAAGA+TGG + chr5.1:1388206-1388225 MS.gene024840:CDS 45.0%
GGCATGAACAGCATCTACAA+TGG - chr5.1:1387039-1387058 None:intergenic 45.0%
GTAGATGCTGTTCATGCCAA+AGG + chr5.1:1387041-1387060 MS.gene024840:CDS 45.0%
TCATTTGTCCCAAGCCTTCT+CGG - chr5.1:1387591-1387610 None:intergenic 45.0%
! CTAATGAGCAAGTTGAGGCA+TGG + chr5.1:1387009-1387028 MS.gene024840:CDS 45.0%
! GATATCGGTGCTTGTCCATT+CGG - chr5.1:1387519-1387538 None:intergenic 45.0%
! TCAACAGGTTTTCAGCCGAA+TGG + chr5.1:1387501-1387520 MS.gene024840:intron 45.0%
! TCTCAAAGGTCCTCTAAAGG+TGG + chr5.1:1386915-1386934 MS.gene024840:CDS 45.0%
!! CAAATCGACATCGGTTCTCT+AGG - chr5.1:1387923-1387942 None:intergenic 45.0%
!! GAACCGATGTCGATTTGCAT+TGG + chr5.1:1387926-1387945 MS.gene024840:CDS 45.0%
AACGGCACTTTCATGGTTGC+AGG + chr5.1:1388185-1388204 MS.gene024840:CDS 50.0%
AAGCCTTTCTCATTGGCACC+AGG - chr5.1:1388163-1388182 None:intergenic 50.0%
GAGATAGGAGCAGAGAGAGT+TGG + chr5.1:1387972-1387991 MS.gene024840:CDS 50.0%
GGCTTTCAACGGCACTTTCA+TGG + chr5.1:1388178-1388197 MS.gene024840:CDS 50.0%
GTCCATATACCTGGTGTGTC+TGG - chr5.1:1386990-1387009 None:intergenic 50.0%
TAGAGGACAGCATGAGGTTG+AGG - chr5.1:1386891-1386910 None:intergenic 50.0%
TCATTGGCACCAGGCTGTAA+GGG - chr5.1:1388154-1388173 None:intergenic 50.0%
CAAGGCTATCCAGACACACC+AGG + chr5.1:1386978-1386997 MS.gene024840:CDS 55.0%
CTCATTGGCACCAGGCTGTA+AGG - chr5.1:1388155-1388174 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5.1:1388188-1388207 MS.gene024840:CDS 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5.1:1386960-1386979 MS.gene024840:CDS 55.0%
TTTGTCCCAAGCCTTCTCGG+TGG - chr5.1:1387588-1387607 None:intergenic 55.0%
! CAGCCTGGTGCCAATGAGAA+AGG + chr5.1:1388157-1388176 MS.gene024840:CDS 55.0%
TCTCGCCACCGAGAAGGCTT+GGG + chr5.1:1387580-1387599 MS.gene024840:CDS 60.0%
TTCTCGCCACCGAGAAGGCT+TGG + chr5.1:1387579-1387598 MS.gene024840:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1386688 1388406 1386688 ID=MS.gene024840
chr5.1 mRNA 1386688 1388406 1386688 ID=MS.gene024840.t1;Parent=MS.gene024840
chr5.1 exon 1386688 1386752 1386688 ID=MS.gene024840.t1.exon1;Parent=MS.gene024840.t1
chr5.1 CDS 1386688 1386752 1386688 ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1 exon 1386842 1387112 1386842 ID=MS.gene024840.t1.exon2;Parent=MS.gene024840.t1
chr5.1 CDS 1386842 1387112 1386842 ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1 exon 1387516 1387666 1387516 ID=MS.gene024840.t1.exon3;Parent=MS.gene024840.t1
chr5.1 CDS 1387516 1387666 1387516 ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1 exon 1387823 1388406 1387823 ID=MS.gene024840.t1.exon4;Parent=MS.gene024840.t1
chr5.1 CDS 1387823 1388406 1387823 ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
Gene Sequence

>MS.gene024840

ATGGAAGCTGATCCCATTCCTCTTATTACACCTTACAAGATGGGCAATTTCAATCTCTCTCATAGGTACCTATTATACTTTCAATTTCAATGTTATGTTTATTTCACTTTCTATTCAATTTCAATATCAATGCTTACCTTGTCTTGCATTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCCTATGGCAAAGTTCCTCAACCTCATGCTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCTGAAGCTACTGGTGTCTCTGACACTGCTCAAGGCTATCCAGACACACCAGGTATATGGACTAATGAGCAAGTTGAGGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTTCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCAGTTATGTATTTTTCCTCATATAATTTGAAGATTATTTTAGTTCGAGATTGTTTATTATTGTTGGATTTCGATTGTTTGTAGTGTGCGTGTATGCAGTCAACCACATCAAGATCGATTGTCTAGATTTCAATGCAAATTTTGACTTTTTAAATCTAAATTCTTGAGCTTGAAATCCAGTCTGTCCAATATTGATCGGACAGTTTTGACGTGTCTGAATAAATGCAGTCACAACTCCGTGATTATACACAACCTAAATCCGTTATTTTTTTTAGTATTTCTACTACTAAGGGGTGACTGCTTTCTGATTTTTTAAGTAATATATATATGCACACATTTATACAAATAAAATACTAACTCAGTATGTCAACTCGGTATGTCCATGTTATTCTCAACAGGTTTTCAGCCGAATGGACAAGCACCGATATCTTCTACAGACAAGTCACTCACAAGCAATGATTTTGAAAAATTCTCGCCACCGAGAAGGCTTGGGACAAATGAAATTCCTGATATTGTCAATGACTTCAGACTCGCCGCAAGAAATGCTATTGAAGCTGGTAAGTTTGTTGATCTTTACAAATTTATCCAAACGAAAAGTACTTCAATCATAGTACAATACTGATATTTTTTAGAAACAAGACTATTTGTTGCTTTAAAGGGCACAAGGACATTTTGAAAATCAACTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATACGGTGGATCCCTAGAGAACCGATGTCGATTTGCATTGGAAGTTGTTGAAGCTGTTGTGAATGAGATAGGAGCAGAGAGAGTTGGAATTAGACTATCACCTTTTGCACAATATGCAGAAAGTGAAGACTCCAATCCCAATGAATTGGGACTTTATATGGCCAATGCTCTCAATAAATACAATATTCTTTATTGTCACATGGTGGAACCAAGAATAAAATCAAATACTGAAACAATTGAAAGCCCTTACAGCCTGGTGCCAATGAGAAAGGCTTTCAACGGCACTTTCATGGTTGCAGGAGGTTATGACAGACAAGATGGGATCAATGCTATAGCAGAAAATAGGGCAGATCTTGTTGTTTATGGTCGTTTATTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCTCTCAATGCTCCTCTTAACAAGTATAATAGGGAAACATTCTACATTTCTGATCCGGTTGTTGGTTATACGGACTATCCATTTCTTGAATGA
Protein sequence

>MS.gene024840.t1

MEADPIPLITPYKMGNFNLSHRVVLAPLTRIRSYGKVPQPHAVLYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTNEQVEAWKPIVDAVHAKGSTFFCQIWHVGRVSNSPNGQAPISSTDKSLTSNDFEKFSPPRRLGTNEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVVNEIGAERVGIRLSPFAQYAESEDSNPNELGLYMANALNKYNILYCHMVEPRIKSNTETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIAENRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE