AlfalfaGEDB | MS.gene024840

M. sativa cultivar XinJiangDaYe / MS.gene024840

KEGG: K05894
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00724.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024840.t1	XP_024639103.1	93	359	22	1	1	356	1	359	9.70E-196	692.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024840.t1	B9FSC8	74.6	358	82	2	7	355	6	363	1.6e-159	563.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024840.t1	G7K3R3	93.0	359	22	1	1	356	1	359	7.0e-196	692.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001051	MS.gene024840	PPI
MS.gene001053	MS.gene024840	PPI
MS.gene001054	MS.gene024840	PPI
MS.gene001056	MS.gene024840	PPI
MS.gene024831	MS.gene024840	PPI
MS.gene024836	MS.gene024840	PPI
MS.gene024840	MS.gene024832	PPI
MS.gene024840	MS.gene001055	PPI
MS.gene024840	MS.gene012217	PPI
MS.gene024840	MS.gene039914	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene024840.t1	MTR_5g006670	93.036	359	22	1	1	356	1	359	696
MS.gene024840.t1	MTR_5g006710	88.983	354	36	1	6	356	10	363	658
MS.gene024840.t1	MTR_5g006780	85.831	367	41	4	1	356	5	371	640
MS.gene024840.t1	MTR_5g006800	84.022	363	49	2	3	356	7	369	630
MS.gene024840.t1	MTR_5g006740	81.918	365	57	3	1	356	1	365	621
MS.gene024840.t1	MTR_5g006750	80.654	367	60	3	1	356	5	371	614
MS.gene024840.t1	MTR_5g008040	78.022	364	71	2	1	355	7	370	595
MS.gene024840.t1	MTR_5g006740	78.729	362	57	4	1	356	1	348	581
MS.gene024840.t1	MTR_5g006720	71.277	376	61	4	1	356	4	352	526
MS.gene024840.t1	MTR_3g115600	69.382	356	104	2	6	356	8	363	521

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024840.t1	AT1G76690	73.889	360	85	2	6	356	12	371	0.0	561
MS.gene024840.t1	AT1G76680	73.056	360	88	3	6	356	10	369	0.0	554
MS.gene024840.t1	AT1G76680	68.312	385	88	4	6	356	10	394	0.0	540
MS.gene024840.t1	AT1G09400	69.753	324	95	1	14	334	1	324	2.55e-177	495
MS.gene024840.t1	AT1G09400	71.212	264	73	1	74	334	2	265	1.26e-143	407
MS.gene024840.t1	AT2G06050	51.337	374	156	4	8	355	12	385	1.31e-136	394
MS.gene024840.t1	AT2G06050	51.337	374	156	4	8	355	12	385	1.31e-136	394
MS.gene024840.t1	AT2G06050	51.337	374	156	4	8	355	12	385	1.31e-136	394
MS.gene024840.t1	AT1G17990	71.032	252	69	2	6	253	7	258	7.93e-135	385
MS.gene024840.t1	AT1G18020	71.032	252	69	2	6	253	7	258	7.93e-135	385

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Find 86 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCGACATCGGTTCTCTA+GGG	0.579801	5.1:-1387919	None:intergenic
AACATTCTACATTTCTGATC+CGG	0.427062	5.1:+1388349	MS.gene024840:CDS
AACGGCACTTTCATGGTTGC+AGG	0.326217	5.1:+1388185	MS.gene024840:CDS
AAGCCTTTCTCATTGGCACC+AGG	0.488795	5.1:-1388160	None:intergenic
AAGTCCCAATTCATTGGGAT+TGG	0.463512	5.1:-1388039	None:intergenic
AATGACAGAACAGATGAATA+CGG	0.588235	5.1:+1387891	MS.gene024840:CDS
AATTGAAAGCCCTTACAGCC+TGG	0.535825	5.1:+1388142	MS.gene024840:CDS
ACAGAAGAATGTAGAACCTT+TGG	0.438653	5.1:-1387057	None:intergenic
AGACTCCAATCCCAATGAAT+TGG	0.357975	5.1:+1388034	MS.gene024840:CDS
AGCTTCAATAGCATTTCTTG+CGG	0.576970	5.1:-1387643	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCTGTTGAGAATAACA+TGG	-	chr5.1:1387493-1387512	None:intergenic	30.0%
AACATTCTACATTTCTGATC+CGG	+	chr5.1:1388349-1388368	MS.gene024840:CDS	30.0%
AATGACAGAACAGATGAATA+CGG	+	chr5.1:1387891-1387910	MS.gene024840:CDS	30.0%
ATCTTGTAAGGTGTAATAAG+AGG	-	chr5.1:1386709-1386728	None:intergenic	30.0%
CAATGAATTGGGACTTTATA+TGG	+	chr5.1:1388046-1388065	MS.gene024840:CDS	30.0%
CAATGCTATAGCAGAAAATA+GGG	+	chr5.1:1388232-1388251	MS.gene024840:CDS	30.0%
CATATAAAGTCCCAATTCAT+TGG	-	chr5.1:1388048-1388067	None:intergenic	30.0%
CTCCTCTTAACAAGTATAAT+AGG	+	chr5.1:1388324-1388343	MS.gene024840:CDS	30.0%
CTTATTACACCTTACAAGAT+GGG	+	chr5.1:1386709-1386728	MS.gene024840:CDS	30.0%
CTTTCATGAATTGTTCAAGT+AGG	-	chr5.1:1387863-1387882	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	1386688	1388406	1386688	ID=MS.gene024840
chr5.1	mRNA	1386688	1388406	1386688	ID=MS.gene024840.t1;Parent=MS.gene024840
chr5.1	exon	1386688	1386752	1386688	ID=MS.gene024840.t1.exon1;Parent=MS.gene024840.t1
chr5.1	CDS	1386688	1386752	1386688	ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1	exon	1386842	1387112	1386842	ID=MS.gene024840.t1.exon2;Parent=MS.gene024840.t1
chr5.1	CDS	1386842	1387112	1386842	ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1	exon	1387516	1387666	1387516	ID=MS.gene024840.t1.exon3;Parent=MS.gene024840.t1
chr5.1	CDS	1387516	1387666	1387516	ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1
chr5.1	exon	1387823	1388406	1387823	ID=MS.gene024840.t1.exon4;Parent=MS.gene024840.t1
chr5.1	CDS	1387823	1388406	1387823	ID=cds.MS.gene024840.t1;Parent=MS.gene024840.t1

Gene Sequence

>MS.gene024840

ATGGAAGCTGATCCCATTCCTCTTATTACACCTTACAAGATGGGCAATTTCAATCTCTCTCATAGGTACCTATTATACTTTCAATTTCAATGTTATGTTTATTTCACTTTCTATTCAATTTCAATATCAATGCTTACCTTGTCTTGCATTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCCTATGGCAAAGTTCCTCAACCTCATGCTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCTGAAGCTACTGGTGTCTCTGACACTGCTCAAGGCTATCCAGACACACCAGGTATATGGACTAATGAGCAAGTTGAGGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTTCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCAGTTATGTATTTTTCCTCATATAATTTGAAGATTATTTTAGTTCGAGATTGTTTATTATTGTTGGATTTCGATTGTTTGTAGTGTGCGTGTATGCAGTCAACCACATCAAGATCGATTGTCTAGATTTCAATGCAAATTTTGACTTTTTAAATCTAAATTCTTGAGCTTGAAATCCAGTCTGTCCAATATTGATCGGACAGTTTTGACGTGTCTGAATAAATGCAGTCACAACTCCGTGATTATACACAACCTAAATCCGTTATTTTTTTTAGTATTTCTACTACTAAGGGGTGACTGCTTTCTGATTTTTTAAGTAATATATATATGCACACATTTATACAAATAAAATACTAACTCAGTATGTCAACTCGGTATGTCCATGTTATTCTCAACAGGTTTTCAGCCGAATGGACAAGCACCGATATCTTCTACAGACAAGTCACTCACAAGCAATGATTTTGAAAAATTCTCGCCACCGAGAAGGCTTGGGACAAATGAAATTCCTGATATTGTCAATGACTTCAGACTCGCCGCAAGAAATGCTATTGAAGCTGGTAAGTTTGTTGATCTTTACAAATTTATCCAAACGAAAAGTACTTCAATCATAGTACAATACTGATATTTTTTAGAAACAAGACTATTTGTTGCTTTAAAGGGCACAAGGACATTTTGAAAATCAACTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATACGGTGGATCCCTAGAGAACCGATGTCGATTTGCATTGGAAGTTGTTGAAGCTGTTGTGAATGAGATAGGAGCAGAGAGAGTTGGAATTAGACTATCACCTTTTGCACAATATGCAGAAAGTGAAGACTCCAATCCCAATGAATTGGGACTTTATATGGCCAATGCTCTCAATAAATACAATATTCTTTATTGTCACATGGTGGAACCAAGAATAAAATCAAATACTGAAACAATTGAAAGCCCTTACAGCCTGGTGCCAATGAGAAAGGCTTTCAACGGCACTTTCATGGTTGCAGGAGGTTATGACAGACAAGATGGGATCAATGCTATAGCAGAAAATAGGGCAGATCTTGTTGTTTATGGTCGTTTATTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCTCTCAATGCTCCTCTTAACAAGTATAATAGGGAAACATTCTACATTTCTGATCCGGTTGTTGGTTATACGGACTATCCATTTCTTGAATGA

Protein sequence

>MS.gene024840.t1

MEADPIPLITPYKMGNFNLSHRVVLAPLTRIRSYGKVPQPHAVLYYSQRSSKGGLLIAEATGVSDTAQGYPDTPGIWTNEQVEAWKPIVDAVHAKGSTFFCQIWHVGRVSNSPNGQAPISSTDKSLTSNDFEKFSPPRRLGTNEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVVNEIGAERVGIRLSPFAQYAESEDSNPNELGLYMANALNKYNILYCHMVEPRIKSNTETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIAENRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE