AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058057.t1 MTR_5g006800 97.027 370 10 1 1 370 1 369 0.0 743
MS.gene058057.t1 MTR_5g006780 92.742 372 24 2 1 370 1 371 0.0 715
MS.gene058057.t1 MTR_5g006750 87.097 372 45 2 1 370 1 371 0.0 679
MS.gene058057.t1 MTR_5g008040 82.114 369 65 1 1 369 3 370 0.0 642
MS.gene058057.t1 MTR_5g006670 84.699 366 49 2 5 370 1 359 0.0 641
MS.gene058057.t1 MTR_5g006740 82.514 366 63 1 5 370 1 365 0.0 640
MS.gene058057.t1 MTR_5g006710 83.516 364 53 2 7 370 7 363 0.0 634
MS.gene058057.t1 MTR_5g006740 79.235 366 58 2 5 370 1 348 0.0 598
MS.gene058057.t1 MTR_5g006720 73.280 378 62 3 4 370 3 352 0.0 559
MS.gene058057.t1 MTR_3g115600 70.914 361 100 2 10 370 8 363 0.0 542
MS.gene058057.t1 MTR_4g125470 53.639 371 157 4 13 369 19 388 2.84e-142 409
MS.gene058057.t1 MTR_5g006730 83.051 118 19 1 1 118 1 117 5.81e-66 206
MS.gene058057.t1 MTR_3g096570 74.359 78 17 1 176 253 8 82 2.75e-31 119
MS.gene058057.t1 MTR_3g096562 67.857 84 24 1 166 249 162 242 1.02e-29 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058057.t1 AT1G76690 79.609 358 73 0 13 370 14 371 0.0 611
MS.gene058057.t1 AT1G76680 77.374 358 81 0 13 370 12 369 0.0 595
MS.gene058057.t1 AT1G76680 72.324 383 81 1 13 370 12 394 0.0 582
MS.gene058057.t1 AT1G09400 70.606 330 91 1 19 348 1 324 1.67e-180 503
MS.gene058057.t1 AT1G09400 71.852 270 70 1 79 348 2 265 4.35e-147 417
MS.gene058057.t1 AT2G06050 51.733 375 162 4 13 369 12 385 1.21e-137 397
MS.gene058057.t1 AT2G06050 51.733 375 162 4 13 369 12 385 1.21e-137 397
MS.gene058057.t1 AT2G06050 51.733 375 162 4 13 369 12 385 1.21e-137 397
MS.gene058057.t1 AT1G17990 71.705 258 67 3 10 267 7 258 3.04e-137 392
MS.gene058057.t1 AT1G18020 71.705 258 67 3 10 267 7 258 3.04e-137 392
MS.gene058057.t1 AT1G17990 68.605 258 67 4 10 267 7 250 1.30e-128 370

Find 107 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.1:-1486649 None:intergenic
ATATAAAGTCCCAATTCTTT+AGG 0.204540 5.1:-1486400 None:intergenic
TAAAGAATTGGGACTTTATA+TGG 0.215484 5.1:+1486402 MS.gene058057:CDS
TCACCAACAGTTATCATTCT+TGG 0.270456 5.1:-1486472 None:intergenic
TATAAAGTCCCAATTCTTTA+GGG 0.287263 5.1:-1486399 None:intergenic
CTCCTCTAAACAAGTATAAC+AGG 0.287689 5.1:+1486680 MS.gene058057:CDS
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5.1:+1484966 MS.gene058057:intron
ATCCAAACACGCCGGGTATA+TGG 0.309625 5.1:+1485121 MS.gene058057:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5.1:+1486541 MS.gene058057:CDS
GTTAATGCCCTCAATAAATA+TGG 0.323996 5.1:+1486424 MS.gene058057:CDS
TCCCTGTTATACTTGTTTAG+AGG 0.330923 5.1:-1486682 None:intergenic
TACGTTCCTGATCCAGTTCT+AGG 0.338102 5.1:+1486712 MS.gene058057:CDS
CTCATTGGCACAAGGCTGTC+GGG 0.340556 5.1:-1486508 None:intergenic
GTCCATATACCCGGCGTGTT+TGG 0.348909 5.1:-1485123 None:intergenic
TATGAGAAGACCACCTTTAG+AGG 0.360557 5.1:-1485061 None:intergenic
AGACTCCAACCCTAAAGAAT+TGG 0.376017 5.1:+1486390 MS.gene058057:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5.1:+1486166 MS.gene058057:intron
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5.1:-1484833 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5.1:-1486523 None:intergenic
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5.1:+1486534 MS.gene058057:CDS
TCATGAACAGCATCTACAAT+AGG 0.392438 5.1:-1485171 None:intergenic
TCAACGCCATAGCTGAAAAC+AGG 0.396930 5.1:+1486587 MS.gene058057:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5.1:-1486658 None:intergenic
CGGTTACTTCATTCAAGAAA+AGG 0.415590 5.1:-1486748 None:intergenic
ATACCATTACTTCGAATTTG+TGG 0.416930 5.1:-1485892 None:intergenic
GATATCGGTGCTTGCCCATC+CGG 0.419692 5.1:-1485847 None:intergenic
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5.1:+1486282 MS.gene058057:CDS
CTGAAGTCATTGACAATGTT+CGG 0.421977 5.1:-1485964 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5.1:+1486167 MS.gene058057:intron
AAAGAATACCATATTTATTG+AGG 0.434046 5.1:-1486432 None:intergenic
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5.1:-1485937 None:intergenic
GCAAATTCAATCTATCTCAT+AGG 0.435780 5.1:+1484846 MS.gene058057:CDS
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5.1:-1486536 None:intergenic
GTCAGAGACACCGGTAGCTT+CGG 0.447363 5.1:-1485085 None:intergenic
GAGATAGGAACAGAAAGAGT+TGG 0.455231 5.1:+1486328 MS.gene058057:CDS
GGAGTAAGAAGAAGTGGAAT+GGG 0.467833 5.1:-1484812 None:intergenic
TCTTCTTACTCCTTACAAGA+TGG 0.468416 5.1:+1484823 MS.gene058057:CDS
TCTCATTGGCACAAGGCTGT+CGG 0.469927 5.1:-1486509 None:intergenic
GACTCCAACCCTAAAGAATT+GGG 0.474283 5.1:+1486391 MS.gene058057:CDS
GGAGGTTACGATCGAAATGA+TGG 0.474346 5.1:+1486562 MS.gene058057:CDS
AGGCTCTCTGAGAGTAATAG+AGG 0.476512 5.1:-1485041 None:intergenic
TTCTGTCAAATTTGGCATGT+TGG 0.476753 5.1:+1485210 MS.gene058057:CDS
AGGGCAGACCTAGTTGTATA+TGG 0.479108 5.1:+1486607 MS.gene058057:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5.1:-1486724 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.489823 5.1:+1484824 MS.gene058057:CDS
AAGAATACCATATTTATTGA+GGG 0.490058 5.1:-1486431 None:intergenic
CTAAAGAGCACGTTGAGGCT+TGG 0.492352 5.1:+1485145 MS.gene058057:CDS
GGTTACTTCATTCAAGAAAA+GGG 0.499808 5.1:-1486747 None:intergenic
CATTCTGCATACTCTGCAAA+AGG 0.500218 5.1:-1486364 None:intergenic
AAGTCCCAATTCTTTAGGGT+TGG 0.500435 5.1:-1486395 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.501045 5.1:+1486313 MS.gene058057:CDS
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.1:-1485024 None:intergenic
AGGAGTAAGAAGAAGTGGAA+TGG 0.502126 5.1:-1484813 None:intergenic
CAGCCTTGTGCCAATGAGAA+AGG 0.506956 5.1:+1486513 MS.gene058057:CDS
TGAAAGATAAAGTGAATGAC+AGG 0.515619 5.1:+1486233 MS.gene058057:CDS
GTATAACCTAGAACTGGATC+AGG 0.517171 5.1:-1486718 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.1:+1485994 MS.gene058057:CDS
GTTGGAAGAGTTTCTGATGC+TGG 0.526670 5.1:+1485228 MS.gene058057:CDS
CTTTCATGAATTGCTCAAGT+AGG 0.528027 5.1:-1486216 None:intergenic
AAACCACAAATTCGAAGTAA+TGG 0.528619 5.1:+1485889 MS.gene058057:CDS
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5.1:+1486272 MS.gene058057:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.529668 5.1:+1486181 MS.gene058057:CDS
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5.1:+1486190 MS.gene058057:CDS
CAAACCGACAACGGTTCTCA+AGG 0.533263 5.1:-1486276 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5.1:-1485934 None:intergenic
TTGAGCAGTGTCAGAGACAC+CGG 0.539225 5.1:-1485094 None:intergenic
TCACACCACCAAGGCGGCTA+AGG 0.540861 5.1:+1485929 MS.gene058057:CDS
TTGTAAGGAGTAAGAAGAAG+TGG 0.542932 5.1:-1484818 None:intergenic
ATTCTCAACAGTTTATCAGC+CGG 0.545602 5.1:+1485828 MS.gene058057:intron
CAACAGTTTATCAGCCGGAT+GGG 0.548494 5.1:+1485833 MS.gene058057:intron
AATGACAGGACAGATGAGTA+TGG 0.553924 5.1:+1486247 MS.gene058057:CDS
TCAACAGTTTATCAGCCGGA+TGG 0.554883 5.1:+1485832 MS.gene058057:intron
TACTCTCAGAGAGCCTCTAA+AGG 0.554945 5.1:+1485048 MS.gene058057:CDS
AGGCCTTTCTCATTGGCACA+AGG 0.555706 5.1:-1486516 None:intergenic
CTTCTCATAGCCGAAGCTAC+CGG 0.560076 5.1:+1485075 MS.gene058057:CDS
CAAGGCTATCCAAACACGCC+GGG 0.568991 5.1:+1485114 MS.gene058057:CDS
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5.1:+1486523 MS.gene058057:CDS
GGCTTGTCTGTGGAAGATAT+CGG 0.577563 5.1:-1485862 None:intergenic
TGGTATTCTTTATTGTCACA+TGG 0.580029 5.1:+1486444 MS.gene058057:CDS
TCATTGGCACAAGGCTGTCG+GGG 0.584370 5.1:-1486507 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5.1:+1486544 MS.gene058057:CDS
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.1:-1486198 None:intergenic
TTTGCAGAGTATGCAGAATG+TGG 0.596323 5.1:+1486367 MS.gene058057:CDS
CTCACAAGACAAAGATCCTA+CGG 0.598712 5.1:+1484994 MS.gene058057:CDS
ACTTCAGTACAGGAAATGGC+TGG 0.601525 5.1:+1484773 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.608055 5.1:+1486168 MS.gene058057:intron
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5.1:-1486285 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.621150 5.1:+1485096 MS.gene058057:CDS
ACAAACGACCATATACAACT+AGG 0.621826 5.1:-1486615 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5.1:-1486275 None:intergenic
TGCTCTTTAGTCCATATACC+CGG 0.626306 5.1:-1485132 None:intergenic
CAACGCCATAGCTGAAAACA+GGG 0.626950 5.1:+1486588 MS.gene058057:CDS
GTAGATGCTGTTCATGACAA+AGG 0.628826 5.1:+1485177 MS.gene058057:CDS
GAGGTTACGATCGAAATGAT+GGG 0.630066 5.1:+1486563 MS.gene058057:CDS
TATTCTTTATTGTCACATGG+TGG 0.639708 5.1:+1486447 MS.gene058057:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.640382 5.1:-1484991 None:intergenic
TCCTCTAAACAAGTATAACA+GGG 0.645269 5.1:+1486681 MS.gene058057:CDS
GACAGGACAGATGAGTATGG+TGG 0.649651 5.1:+1486250 MS.gene058057:CDS
TCAAGGCTATCCAAACACGC+CGG 0.650428 5.1:+1485113 MS.gene058057:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5.1:-1485010 None:intergenic
TCTCAGAGAGCCTCTAAAGG+TGG 0.663690 5.1:+1485051 MS.gene058057:CDS
GAGTAATAGAGGATAGCATG+AGG 0.689366 5.1:-1485030 None:intergenic
GAACCAAGAATGATAACTGT+TGG 0.691135 5.1:+1486469 MS.gene058057:CDS
TTGCAAAATTCACACCACCA+AGG 0.719184 5.1:+1485920 MS.gene058057:CDS
ATGGACTAAAGAGCACGTTG+AGG 0.722206 5.1:+1485140 MS.gene058057:CDS
CAAAATTCACACCACCAAGG+CGG 0.741166 5.1:+1485923 MS.gene058057:CDS
GATGCTGTTCATGACAAAGG+CGG 0.776205 5.1:+1485180 MS.gene058057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGTTTACAATAAAA+GGG + chr5.1:1485673-1485692 MS.gene058057:intron 10.0%
!! CTAATATTGTTTACAATAAA+AGG + chr5.1:1485672-1485691 MS.gene058057:intron 15.0%
!! AAAGAATACCATATTTATTG+AGG - chr5.1:1486435-1486454 None:intergenic 20.0%
!! AACATGACATAAAACATAAA+CGG + chr5.1:1485403-1485422 MS.gene058057:intron 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5.1:1486434-1486453 None:intergenic 20.0%
!! AATATGATATGATATGTTCT+AGG + chr5.1:1485526-1485545 MS.gene058057:intron 20.0%
!! AATATGGAATGATAAATGAA+TGG - chr5.1:1484889-1484908 None:intergenic 20.0%
!! AATTATGTAACATACTTAGT+GGG + chr5.1:1486143-1486162 MS.gene058057:intron 20.0%
!! TTGTTATCGAGTATTATTAA+GGG + chr5.1:1485717-1485736 MS.gene058057:intron 20.0%
! ACATGACATAAAACATAAAC+GGG + chr5.1:1485404-1485423 MS.gene058057:intron 25.0%
! ATAAACTGTTGAGAATAACA+TGG - chr5.1:1485824-1485843 None:intergenic 25.0%
! ATATAAAGTCCCAATTCTTT+AGG - chr5.1:1486403-1486422 None:intergenic 25.0%
! ATCACACATAAATGTTCTAA+TGG + chr5.1:1485765-1485784 MS.gene058057:intron 25.0%
! ATTATGTAACATACTTAGTG+GGG + chr5.1:1486144-1486163 MS.gene058057:intron 25.0%
! CAATTATGTAACATACTTAG+TGG + chr5.1:1486142-1486161 MS.gene058057:intron 25.0%
! CACTAAGTATGTTACATAAT+TGG - chr5.1:1486144-1486163 None:intergenic 25.0%
! GTTGTTATCGAGTATTATTA+AGG + chr5.1:1485716-1485735 MS.gene058057:intron 25.0%
! TAAAGAATTGGGACTTTATA+TGG + chr5.1:1486402-1486421 MS.gene058057:CDS 25.0%
! TATAAAGTCCCAATTCTTTA+GGG - chr5.1:1486402-1486421 None:intergenic 25.0%
! TGAGCAATTGAAATTGAATA+TGG - chr5.1:1484905-1484924 None:intergenic 25.0%
! TGTTATCGAGTATTATTAAG+GGG + chr5.1:1485718-1485737 MS.gene058057:intron 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5.1:1484966-1484985 MS.gene058057:intron 25.0%
!! CAAAAGTATATTTGTACAAC+AGG - chr5.1:1485633-1485652 None:intergenic 25.0%
!! CTGTTGTACAAATATACTTT+TGG + chr5.1:1485631-1485650 MS.gene058057:intron 25.0%
!! TTACAATAAAAGGGTATGAT+TGG + chr5.1:1485682-1485701 MS.gene058057:intron 25.0%
!!! GAGATTTTTGTTACTTTAGA+TGG + chr5.1:1486104-1486123 MS.gene058057:intron 25.0%
!!! TACATTTTGACTAAAGACAT+AGG - chr5.1:1485468-1485487 None:intergenic 25.0%
AAACCACAAATTCGAAGTAA+TGG + chr5.1:1485889-1485908 MS.gene058057:CDS 30.0%
ATACCATTACTTCGAATTTG+TGG - chr5.1:1485895-1485914 None:intergenic 30.0%
CATGACATAAAACATAAACG+GGG + chr5.1:1485405-1485424 MS.gene058057:intron 30.0%
CTTTAGTCAAAATGTAACTG+CGG + chr5.1:1485472-1485491 MS.gene058057:intron 30.0%
GAGTAAATAACACAAACACA+TGG - chr5.1:1484946-1484965 None:intergenic 30.0%
GCAAATTCAATCTATCTCAT+AGG + chr5.1:1484846-1484865 MS.gene058057:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5.1:1486424-1486443 MS.gene058057:CDS 30.0%
GTTATCGAGTATTATTAAGG+GGG + chr5.1:1485719-1485738 MS.gene058057:intron 30.0%
TATTCTTTATTGTCACATGG+TGG + chr5.1:1486447-1486466 MS.gene058057:CDS 30.0%
TCCTCTAAACAAGTATAACA+GGG + chr5.1:1486681-1486700 MS.gene058057:CDS 30.0%
TGAAAGATAAAGTGAATGAC+AGG + chr5.1:1486233-1486252 MS.gene058057:CDS 30.0%
TGGTATTCTTTATTGTCACA+TGG + chr5.1:1486444-1486463 MS.gene058057:CDS 30.0%
! GTGTGTTTTTCTGTCAAATT+TGG + chr5.1:1485202-1485221 MS.gene058057:CDS 30.0%
!! GGCATTTTAATCAGAGTAAT+AGG - chr5.1:1485447-1485466 None:intergenic 30.0%
!! TAGGAGTTATTCGTTTTTCT+TGG + chr5.1:1485358-1485377 MS.gene058057:intron 30.0%
AATGTAACTGCGGAAAGAAT+TGG + chr5.1:1485482-1485501 MS.gene058057:intron 35.0%
ACAAACGACCATATACAACT+AGG - chr5.1:1486618-1486637 None:intergenic 35.0%
ACCTCAAATCAATACTTGTG+TGG - chr5.1:1485309-1485328 None:intergenic 35.0%
ACTGAGTGAATTATGTGACT+AGG + chr5.1:1485339-1485358 MS.gene058057:intron 35.0%
ATTCTCAACAGTTTATCAGC+CGG + chr5.1:1485828-1485847 MS.gene058057:intron 35.0%
CTCCTCTAAACAAGTATAAC+AGG + chr5.1:1486680-1486699 MS.gene058057:CDS 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5.1:1485967-1485986 None:intergenic 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5.1:1484824-1484843 MS.gene058057:CDS 35.0%
CTTTCATGAATTGCTCAAGT+AGG - chr5.1:1486219-1486238 None:intergenic 35.0%
GAACCAAGAATGATAACTGT+TGG + chr5.1:1486469-1486488 MS.gene058057:CDS 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5.1:1486727-1486746 None:intergenic 35.0%
TCACCAACAGTTATCATTCT+TGG - chr5.1:1486475-1486494 None:intergenic 35.0%
TCATGAACAGCATCTACAAT+AGG - chr5.1:1485174-1485193 None:intergenic 35.0%
TCCCTGTTATACTTGTTTAG+AGG - chr5.1:1486685-1486704 None:intergenic 35.0%
TCTTCTTACTCCTTACAAGA+TGG + chr5.1:1484823-1484842 MS.gene058057:CDS 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.1:1486167-1486186 MS.gene058057:intron 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5.1:1485210-1485229 MS.gene058057:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.1:1484836-1484855 None:intergenic 35.0%
TTGTAAGGAGTAAGAAGAAG+TGG - chr5.1:1484821-1484840 None:intergenic 35.0%
! CATTCAGTTTTCCTCACTTA+AGG - chr5.1:1485572-1485591 None:intergenic 35.0%
!! ATGATATGTTCTAGGACAGT+AGG + chr5.1:1485534-1485553 MS.gene058057:intron 35.0%
!! ATTGATTTGAGGTTTCCTTG+TGG + chr5.1:1485316-1485335 MS.gene058057:intron 35.0%
!! TTGTTACTTTAGATGGCACT+AGG + chr5.1:1486111-1486130 MS.gene058057:intron 35.0%
!!! CTTCGAATTTGTGGTTTTAG+TGG - chr5.1:1485886-1485905 None:intergenic 35.0%
AATGACAGGACAGATGAGTA+TGG + chr5.1:1486247-1486266 MS.gene058057:CDS 40.0%
AGACTCCAACCCTAAAGAAT+TGG + chr5.1:1486390-1486409 MS.gene058057:CDS 40.0%
AGGAGTAAGAAGAAGTGGAA+TGG - chr5.1:1484816-1484835 None:intergenic 40.0%
CACACATGTTACCTTAAGTG+AGG + chr5.1:1485558-1485577 MS.gene058057:intron 40.0%
CATAATTCACTCAGTCCACA+AGG - chr5.1:1485334-1485353 None:intergenic 40.0%
CATTCTGCATACTCTGCAAA+AGG - chr5.1:1486367-1486386 None:intergenic 40.0%
CTCACAAGACAAAGATCCTA+CGG + chr5.1:1484994-1485013 MS.gene058057:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.1:1486313-1486332 MS.gene058057:CDS 40.0%
GACTCCAACCCTAAAGAATT+GGG + chr5.1:1486391-1486410 MS.gene058057:CDS 40.0%
GAGATAGGAACAGAAAGAGT+TGG + chr5.1:1486328-1486347 MS.gene058057:CDS 40.0%
GAGGTTACGATCGAAATGAT+GGG + chr5.1:1486563-1486582 MS.gene058057:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5.1:1485033-1485052 None:intergenic 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.1:1486652-1486671 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.1:1486168-1486187 MS.gene058057:intron 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.1:1485994-1486013 MS.gene058057:CDS 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5.1:1486661-1486680 None:intergenic 40.0%
GGAGTAAGAAGAAGTGGAAT+GGG - chr5.1:1484815-1484834 None:intergenic 40.0%
GTAGATGCTGTTCATGACAA+AGG + chr5.1:1485177-1485196 MS.gene058057:CDS 40.0%
GTATAACCTAGAACTGGATC+AGG - chr5.1:1486721-1486740 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.1:1486166-1486185 MS.gene058057:intron 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5.1:1484994-1485013 None:intergenic 40.0%
TATGAGAAGACCACCTTTAG+AGG - chr5.1:1485064-1485083 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+CGG - chr5.1:1485135-1485154 None:intergenic 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5.1:1485920-1485939 MS.gene058057:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.1:1486181-1486200 MS.gene058057:CDS 40.0%
TTTGCAGAGTATGCAGAATG+TGG + chr5.1:1486367-1486386 MS.gene058057:CDS 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5.1:1486539-1486558 None:intergenic 40.0%
!! AAGTCCCAATTCTTTAGGGT+TGG - chr5.1:1486398-1486417 None:intergenic 40.0%
!! GCCACACAAGTATTGATTTG+AGG + chr5.1:1485305-1485324 MS.gene058057:intron 40.0%
AAACCGACAACGGTTCTCAA+GGG - chr5.1:1486278-1486297 None:intergenic 45.0%
AATACTTGTGTGGCAACTCG+CGG - chr5.1:1485299-1485318 None:intergenic 45.0%
AGGGCAGACCTAGTTGTATA+TGG + chr5.1:1486607-1486626 MS.gene058057:CDS 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5.1:1485923-1485942 MS.gene058057:CDS 45.0%
CAACAGTTTATCAGCCGGAT+GGG + chr5.1:1485833-1485852 MS.gene058057:intron 45.0%
CAACGCCATAGCTGAAAACA+GGG + chr5.1:1486588-1486607 MS.gene058057:CDS 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5.1:1486523-1486542 MS.gene058057:CDS 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5.1:1486288-1486307 None:intergenic 45.0%
GATGCTGTTCATGACAAAGG+CGG + chr5.1:1485180-1485199 MS.gene058057:CDS 45.0%
GGAGGTTACGATCGAAATGA+TGG + chr5.1:1486562-1486581 MS.gene058057:CDS 45.0%
GGCTTGTCTGTGGAAGATAT+CGG - chr5.1:1485865-1485884 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.1:1486190-1486209 MS.gene058057:CDS 45.0%
GTTGGAAGAGTTTCTGATGC+TGG + chr5.1:1485228-1485247 MS.gene058057:CDS 45.0%
TACGTTCCTGATCCAGTTCT+AGG + chr5.1:1486712-1486731 MS.gene058057:CDS 45.0%
TACTCTCAGAGAGCCTCTAA+AGG + chr5.1:1485048-1485067 MS.gene058057:CDS 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.1:1485027-1485046 None:intergenic 45.0%
TCAACAGTTTATCAGCCGGA+TGG + chr5.1:1485832-1485851 MS.gene058057:intron 45.0%
TCAACGCCATAGCTGAAAAC+AGG + chr5.1:1486587-1486606 MS.gene058057:CDS 45.0%
! AGGCTCTCTGAGAGTAATAG+AGG - chr5.1:1485044-1485063 None:intergenic 45.0%
! ATGGACTAAAGAGCACGTTG+AGG + chr5.1:1485140-1485159 MS.gene058057:CDS 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5.1:1486526-1486545 None:intergenic 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5.1:1486541-1486560 MS.gene058057:CDS 45.0%
!! CTCGCGGTACTTTTGTTTAC+TGG - chr5.1:1485283-1485302 None:intergenic 45.0%
!!! TGGTTTTAGTGGCTTGTCTG+TGG - chr5.1:1485875-1485894 None:intergenic 45.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5.1:1486519-1486538 None:intergenic 50.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5.1:1485013-1485032 None:intergenic 50.0%
ATCCAAACACGCCGGGTATA+TGG + chr5.1:1485121-1485140 MS.gene058057:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5.1:1486279-1486298 None:intergenic 50.0%
CTTAGTGGGGTGCAAATTGC+AGG + chr5.1:1486157-1486176 MS.gene058057:intron 50.0%
CTTCTCATAGCCGAAGCTAC+CGG + chr5.1:1485075-1485094 MS.gene058057:CDS 50.0%
GACAGGACAGATGAGTATGG+TGG + chr5.1:1486250-1486269 MS.gene058057:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.1:1486272-1486291 MS.gene058057:CDS 50.0%
TCAAGGCTATCCAAACACGC+CGG + chr5.1:1485113-1485132 MS.gene058057:CDS 50.0%
TCTCATTGGCACAAGGCTGT+CGG - chr5.1:1486512-1486531 None:intergenic 50.0%
TTGAGCAGTGTCAGAGACAC+CGG - chr5.1:1485097-1485116 None:intergenic 50.0%
! CAGCCTTGTGCCAATGAGAA+AGG + chr5.1:1486513-1486532 MS.gene058057:CDS 50.0%
! CTAAAGAGCACGTTGAGGCT+TGG + chr5.1:1485145-1485164 MS.gene058057:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5.1:1486596-1486615 None:intergenic 50.0%
! TCTCAGAGAGCCTCTAAAGG+TGG + chr5.1:1485051-1485070 MS.gene058057:CDS 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5.1:1486282-1486301 MS.gene058057:CDS 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5.1:1486534-1486553 MS.gene058057:CDS 50.0%
CAAGGCTATCCAAACACGCC+GGG + chr5.1:1485114-1485133 MS.gene058057:CDS 55.0%
CTCATTGGCACAAGGCTGTC+GGG - chr5.1:1486511-1486530 None:intergenic 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5.1:1486544-1486563 MS.gene058057:CDS 55.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5.1:1485096-1485115 MS.gene058057:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.1:1486201-1486220 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5.1:1485088-1485107 None:intergenic 55.0%
GTCCATATACCCGGCGTGTT+TGG - chr5.1:1485126-1485145 None:intergenic 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5.1:1485940-1485959 None:intergenic 55.0%
TCATTGGCACAAGGCTGTCG+GGG - chr5.1:1486510-1486529 None:intergenic 55.0%
! GATATCGGTGCTTGCCCATC+CGG - chr5.1:1485850-1485869 None:intergenic 55.0%
TCACACCACCAAGGCGGCTA+AGG + chr5.1:1485929-1485948 MS.gene058057:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5.1:1485937-1485956 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1484788 1486762 1484788 ID=MS.gene058057
chr5.1 mRNA 1484788 1486762 1484788 ID=MS.gene058057.t1;Parent=MS.gene058057
chr5.1 exon 1484788 1484867 1484788 ID=MS.gene058057.t1.exon1;Parent=MS.gene058057.t1
chr5.1 CDS 1484788 1484867 1484788 ID=cds.MS.gene058057.t1;Parent=MS.gene058057.t1
chr5.1 exon 1484978 1485249 1484978 ID=MS.gene058057.t1.exon2;Parent=MS.gene058057.t1
chr5.1 CDS 1484978 1485249 1484978 ID=cds.MS.gene058057.t1;Parent=MS.gene058057.t1
chr5.1 exon 1485839 1486015 1485839 ID=MS.gene058057.t1.exon3;Parent=MS.gene058057.t1
chr5.1 CDS 1485839 1486015 1485839 ID=cds.MS.gene058057.t1;Parent=MS.gene058057.t1
chr5.1 exon 1486179 1486762 1486179 ID=MS.gene058057.t1.exon4;Parent=MS.gene058057.t1
chr5.1 CDS 1486179 1486762 1486179 ID=cds.MS.gene058057.t1;Parent=MS.gene058057.t1
Gene Sequence

>MS.gene058057

ATGGCTGGTGTTGTTGAATCTGATCCCATTCCACTTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGGTATTTTTATTATCTTTTCCATTCATTTATCATTCCATATTCAATTTCAATTGCTCAAATATTCACACACACACACCATGTGTTTGTGTTATTTACTCATTTCATTTCAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCCTCTAAAGGTGGTCTTCTCATAGCCGAAGCTACCGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACGCCGGGTATATGGACTAAAGAGCACGTTGAGGCTTGGAAACCTATTGTAGATGCTGTTCATGACAAAGGCGGTGTGTTTTTCTGTCAAATTTGGCATGTTGGAAGAGTTTCTGATGCTGGTATGCTCTATTTCATCAAATTATCATGAGCCAGTAAACAAAAGTACCGCGAGTTGCCACACAAGTATTGATTTGAGGTTTCCTTGTGGACTGAGTGAATTATGTGACTAGGAGTTATTCGTTTTTCTTGGCATACAATCGTGATATAGATTTAACATGACATAAAACATAAACGGGGACTTTGTTTATTTGAACCTATTACTCTGATTAAAATGCCTATGTCTTTAGTCAAAATGTAACTGCGGAAAGAATTGGTGCAAAATGCTATTAACAGTAAATATGATATGATATGTTCTAGGACAGTAGGACACACATGTTACCTTAAGTGAGGAAAACTGAATGATTAATTTGTAAATGTGTCATATTGCATTTGTTGTCAACCTGTTGTACAAATATACTTTTGGCATCTATTAAATAAAAGTCTAATATTGTTTACAATAAAAGGGTATGATTGGAGTGAAAGATTGTTGTTATCGAGTATTATTAAGGGGGAAACTGCATTCTGATTTTTAGCTATCACACATAAATGTTCTAATGGCTGTGATGTACAAGCTCATTGTATGCTCATTTTCCATGTTATTCTCAACAGTTTATCAGCCGGATGGGCAAGCACCGATATCTTCCACAGACAAGCCACTAAAACCACAAATTCGAAGTAATGGTATTGATGTTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAACTTTACTAATCTTTACAAATGTCTCAAAAATTAAAAAAATTCTTTAATGTATCATAATACAATGTATTATGTATGTGAGACGTAGAGATTTTTGTTACTTTAGATGGCACTAGGACATTTTCCAATTATGTAACATACTTAGTGGGGTGCAAATTGCAGGATTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAGCAATTCATGAAAGATAAAGTGAATGACAGGACAGATGAGTATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAACAGAAAGAGTTGGAATAAGATTATCACCTTTTGCAGAGTATGCAGAATGTGGAGACTCCAACCCTAAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCACATGGTGGAACCAAGAATGATAACTGTTGGTGAAAAAACTGAATGCCCCGACAGCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGATCGAAATGATGGGATCAACGCCATAGCTGAAAACAGGGCAGACCTAGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTAAACAAGTATAACAGGGAGACATTTTACGTTCCTGATCCAGTTCTAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>MS.gene058057.t1

MAGVVESDPIPLLLTPYKMGKFNLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRASKGGLLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGGVFFCQIWHVGRVSDAVYQPDGQAPISSTDKPLKPQIRSNGIDVAKFTPPRRLRTDEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGTERVGIRLSPFAEYAECGDSNPKELGLYMVNALNKYGILYCHMVEPRMITVGEKTECPDSLVPMRKAFKGTFMVAGGYDRNDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYVPDPVLGYTDYPFLE