Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40471.t1 | XP_024639103.1 | 93 | 359 | 22 | 1 | 1 | 356 | 1 | 359 | 9.70E-196 | 692.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40471.t1 | B9FSC8 | 74.6 | 358 | 82 | 2 | 7 | 355 | 6 | 363 | 1.6e-159 | 563.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40471.t1 | G7K3R3 | 93.0 | 359 | 22 | 1 | 1 | 356 | 1 | 359 | 7.0e-196 | 692.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40471.t1 | MTR_5g006670 | 93.036 | 359 | 22 | 1 | 1 | 356 | 1 | 359 | 0.0 | 696 |
| MS.gene40471.t1 | MTR_5g006710 | 88.983 | 354 | 36 | 1 | 6 | 356 | 10 | 363 | 0.0 | 658 |
| MS.gene40471.t1 | MTR_5g006780 | 85.831 | 367 | 41 | 4 | 1 | 356 | 5 | 371 | 0.0 | 640 |
| MS.gene40471.t1 | MTR_5g006800 | 84.022 | 363 | 49 | 2 | 3 | 356 | 7 | 369 | 0.0 | 630 |
| MS.gene40471.t1 | MTR_5g006740 | 81.918 | 365 | 57 | 3 | 1 | 356 | 1 | 365 | 0.0 | 621 |
| MS.gene40471.t1 | MTR_5g006750 | 80.654 | 367 | 60 | 3 | 1 | 356 | 5 | 371 | 0.0 | 614 |
| MS.gene40471.t1 | MTR_5g008040 | 78.022 | 364 | 71 | 2 | 1 | 355 | 7 | 370 | 0.0 | 595 |
| MS.gene40471.t1 | MTR_5g006740 | 78.729 | 362 | 57 | 4 | 1 | 356 | 1 | 348 | 0.0 | 581 |
| MS.gene40471.t1 | MTR_5g006720 | 71.277 | 376 | 61 | 4 | 1 | 356 | 4 | 352 | 0.0 | 526 |
| MS.gene40471.t1 | MTR_3g115600 | 69.382 | 356 | 104 | 2 | 6 | 356 | 8 | 363 | 0.0 | 521 |
| MS.gene40471.t1 | MTR_4g125470 | 54.595 | 370 | 146 | 4 | 8 | 355 | 19 | 388 | 1.90e-142 | 409 |
| MS.gene40471.t1 | MTR_5g006730 | 81.818 | 110 | 20 | 0 | 3 | 112 | 7 | 116 | 3.07e-61 | 193 |
| MS.gene40471.t1 | MTR_3g096570 | 80.282 | 71 | 14 | 0 | 162 | 232 | 8 | 78 | 1.50e-32 | 122 |
| MS.gene40471.t1 | MTR_3g096562 | 77.778 | 72 | 16 | 0 | 152 | 223 | 162 | 233 | 1.13e-30 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40471.t1 | AT1G76690 | 73.889 | 360 | 85 | 2 | 6 | 356 | 12 | 371 | 0.0 | 561 |
| MS.gene40471.t1 | AT1G76680 | 73.056 | 360 | 88 | 3 | 6 | 356 | 10 | 369 | 0.0 | 554 |
| MS.gene40471.t1 | AT1G76680 | 68.312 | 385 | 88 | 4 | 6 | 356 | 10 | 394 | 0.0 | 540 |
| MS.gene40471.t1 | AT1G09400 | 69.753 | 324 | 95 | 1 | 14 | 334 | 1 | 324 | 2.55e-177 | 495 |
| MS.gene40471.t1 | AT1G09400 | 71.212 | 264 | 73 | 1 | 74 | 334 | 2 | 265 | 1.26e-143 | 407 |
| MS.gene40471.t1 | AT2G06050 | 51.337 | 374 | 156 | 4 | 8 | 355 | 12 | 385 | 1.31e-136 | 394 |
| MS.gene40471.t1 | AT2G06050 | 51.337 | 374 | 156 | 4 | 8 | 355 | 12 | 385 | 1.31e-136 | 394 |
| MS.gene40471.t1 | AT2G06050 | 51.337 | 374 | 156 | 4 | 8 | 355 | 12 | 385 | 1.31e-136 | 394 |
| MS.gene40471.t1 | AT1G17990 | 71.032 | 252 | 69 | 2 | 6 | 253 | 7 | 258 | 7.93e-135 | 385 |
| MS.gene40471.t1 | AT1G18020 | 71.032 | 252 | 69 | 2 | 6 | 253 | 7 | 258 | 7.93e-135 | 385 |
| MS.gene40471.t1 | AT1G17990 | 67.857 | 252 | 69 | 3 | 6 | 253 | 7 | 250 | 3.61e-126 | 363 |
Find 86 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.203120 | 5.3:-1741563 | None:intergenic |
| CAATGAATTGGGACTTTATA+TGG | 0.208006 | 5.3:+1741316 | MS.gene40471:CDS |
| AGGGCAGATCTTGTTGTTTA+TGG | 0.218911 | 5.3:+1741521 | MS.gene40471:CDS |
| TCAATGCTATAGCAGAAAAT+AGG | 0.227212 | 5.3:+1741501 | MS.gene40471:CDS |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 5.3:+1741594 | MS.gene40471:CDS |
| CTTGCATTTCAGAGTTGTTT+TGG | 0.229757 | 5.3:+1740100 | MS.gene40471:intron |
| CTACATTCTTCTGTCAGATT+TGG | 0.272259 | 5.3:+1740336 | MS.gene40471:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 5.3:-1740885 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.292988 | 5.3:-1740195 | None:intergenic |
| TGATCCGGTTGTTGGTTATA+CGG | 0.296277 | 5.3:+1741634 | MS.gene40471:CDS |
| AACGGCACTTTCATGGTTGC+AGG | 0.326217 | 5.3:+1741455 | MS.gene40471:CDS |
| CTCATTGGCACCAGGCTGTA+AGG | 0.342562 | 5.3:-1741422 | None:intergenic |
| ATCCAGACACACCAGGTATA+TGG | 0.345292 | 5.3:+1740255 | MS.gene40471:CDS |
| CATATAAAGTCCCAATTCAT+TGG | 0.351928 | 5.3:-1741315 | None:intergenic |
| AGACTCCAATCCCAATGAAT+TGG | 0.357975 | 5.3:+1741304 | MS.gene40471:CDS |
| GGCTTTCAACGGCACTTTCA+TGG | 0.358796 | 5.3:+1741448 | MS.gene40471:CDS |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 5.3:-1741596 | None:intergenic |
| CTTTCTGCATATTGTGCAAA+AGG | 0.371976 | 5.3:-1741278 | None:intergenic |
| GCATTGAGAGCAAATCTCTT+TGG | 0.376749 | 5.3:-1741572 | None:intergenic |
| GTCCATATACCTGGTGTGTC+TGG | 0.379392 | 5.3:-1740257 | None:intergenic |
| TTTGATGGTGTTGAAATTCA+TGG | 0.380570 | 5.3:+1741095 | MS.gene40471:CDS |
| TCATTTGTCCCAAGCCTTCT+CGG | 0.386908 | 5.3:-1740858 | None:intergenic |
| TACATTTCTGATCCGGTTGT+TGG | 0.398433 | 5.3:+1741626 | MS.gene40471:CDS |
| GAGATAGGAGCAGAGAGAGT+TGG | 0.399554 | 5.3:+1741242 | MS.gene40471:CDS |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.405740 | 5.3:+1740849 | MS.gene40471:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 5.3:+1741595 | MS.gene40471:CDS |
| TTGAAATTGCCCATCTTGTA+AGG | 0.410446 | 5.3:-1739988 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 5.3:-1740175 | None:intergenic |
| GCAATTTCAATCTCTCTCAT+AGG | 0.425449 | 5.3:+1740001 | MS.gene40471:CDS |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 5.3:+1741619 | MS.gene40471:CDS |
| CAATGCTATAGCAGAAAATA+GGG | 0.432026 | 5.3:+1741502 | MS.gene40471:CDS |
| CAAATCGACATCGGTTCTCT+AGG | 0.437051 | 5.3:-1741190 | None:intergenic |
| ACAGAAGAATGTAGAACCTT+TGG | 0.438653 | 5.3:-1740327 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 5.3:-1740786 | None:intergenic |
| GACTCCAATCCCAATGAATT+GGG | 0.447639 | 5.3:+1741305 | MS.gene40471:CDS |
| TCTTATTACACCTTACAAGA+TGG | 0.451798 | 5.3:+1739978 | MS.gene40471:CDS |
| CCGTTGAAAGCCTTTCTCAT+TGG | 0.453741 | 5.3:-1741437 | None:intergenic |
| ATATAAAGTCCCAATTCATT+GGG | 0.455839 | 5.3:-1741314 | None:intergenic |
| AAGTCCCAATTCATTGGGAT+TGG | 0.463512 | 5.3:-1741309 | None:intergenic |
| ATTGTATTTATTGAGAGCAT+TGG | 0.466555 | 5.3:-1741339 | None:intergenic |
| CTTCTTATAGCTGAAGCTAC+TGG | 0.479639 | 5.3:+1740209 | MS.gene40471:CDS |
| TAAGGTGTAATAAGAGGAAT+GGG | 0.482782 | 5.3:-1739970 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 5.3:+1740128 | MS.gene40471:CDS |
| TCTCGCCACCGAGAAGGCTT+GGG | 0.486835 | 5.3:+1740850 | MS.gene40471:CDS |
| TAGAGGACAGCATGAGGTTG+AGG | 0.488275 | 5.3:-1740158 | None:intergenic |
| AAGCCTTTCTCATTGGCACC+AGG | 0.488795 | 5.3:-1741430 | None:intergenic |
| TCATTGGCACCAGGCTGTAA+GGG | 0.490492 | 5.3:-1741421 | None:intergenic |
| GCATGAACAGCATCTACAAT+GGG | 0.496515 | 5.3:-1740305 | None:intergenic |
| CAGCCTGGTGCCAATGAGAA+AGG | 0.498444 | 5.3:+1741427 | MS.gene40471:CDS |
| GAACCGATGTCGATTTGCAT+TGG | 0.506354 | 5.3:+1741196 | MS.gene40471:CDS |
| GTAAGGTGTAATAAGAGGAA+TGG | 0.511089 | 5.3:-1739971 | None:intergenic |
| CTGTCCTCTATTACTCTCAA+AGG | 0.511507 | 5.3:+1740171 | MS.gene40471:CDS |
| TTCTGTCAGATTTGGCATGT+TGG | 0.513208 | 5.3:+1740344 | MS.gene40471:CDS |
| CAATATTCTTTATTGTCACA+TGG | 0.513287 | 5.3:+1741358 | MS.gene40471:CDS |
| CTTATTACACCTTACAAGAT+GGG | 0.515387 | 5.3:+1739979 | MS.gene40471:CDS |
| GAAGCTGTTGTGAATGAGAT+AGG | 0.516901 | 5.3:+1741227 | MS.gene40471:CDS |
| GGAGGTTATGACAGACAAGA+TGG | 0.517730 | 5.3:+1741476 | MS.gene40471:CDS |
| ATCTTGTAAGGTGTAATAAG+AGG | 0.519989 | 5.3:-1739976 | None:intergenic |
| GACTTGTCTGTAGAAGATAT+CGG | 0.525444 | 5.3:-1740801 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 5.3:+1740915 | MS.gene40471:CDS |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 5.3:+1740182 | MS.gene40471:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.3:-1741130 | None:intergenic |
| AATTGAAAGCCCTTACAGCC+TGG | 0.535825 | 5.3:+1741412 | MS.gene40471:CDS |
| GTAGATGCTGTTCATGCCAA+AGG | 0.560999 | 5.3:+1740311 | MS.gene40471:CDS |
| TAGTCCGTATAACCAACAAC+CGG | 0.576852 | 5.3:-1741638 | None:intergenic |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 5.3:-1740913 | None:intergenic |
| AAATCGACATCGGTTCTCTA+GGG | 0.579801 | 5.3:-1741189 | None:intergenic |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 5.3:+1741161 | MS.gene40471:CDS |
| GGCATGAACAGCATCTACAA+TGG | 0.589084 | 5.3:-1740306 | None:intergenic |
| GTTGAAATTCATGGAGCTCA+TGG | 0.595308 | 5.3:+1741104 | MS.gene40471:CDS |
| CTAATGAGCAAGTTGAGGCA+TGG | 0.595655 | 5.3:+1740279 | MS.gene40471:CDS |
| CAAGGCTATCCAGACACACC+AGG | 0.601781 | 5.3:+1740248 | MS.gene40471:CDS |
| TGCTCATTAGTCCATATACC+TGG | 0.603317 | 5.3:-1740266 | None:intergenic |
| AGGTTGAGGAACTTTGCCAT+AGG | 0.604983 | 5.3:-1740144 | None:intergenic |
| GGTGTCTCTGACACTGCTCA+AGG | 0.607719 | 5.3:+1740230 | MS.gene40471:CDS |
| CCAATGAGAAAGGCTTTCAA+CGG | 0.607890 | 5.3:+1741437 | MS.gene40471:CDS |
| GGCACTTTCATGGTTGCAGG+AGG | 0.608579 | 5.3:+1741458 | MS.gene40471:CDS |
| GAGGTTATGACAGACAAGAT+GGG | 0.609791 | 5.3:+1741477 | MS.gene40471:CDS |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 5.3:-1740125 | None:intergenic |
| TATTCTTTATTGTCACATGG+TGG | 0.626954 | 5.3:+1741361 | MS.gene40471:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 5.3:+1740185 | MS.gene40471:CDS |
| ATGGACTAATGAGCAAGTTG+AGG | 0.645395 | 5.3:+1740274 | MS.gene40471:CDS |
| GAGTAATAGAGGACAGCATG+AGG | 0.651668 | 5.3:-1740164 | None:intergenic |
| CTTCCAATGCAAATCGACAT+CGG | 0.652380 | 5.3:-1741199 | None:intergenic |
| TTTGTCCCAAGCCTTCTCGG+TGG | 0.692595 | 5.3:-1740855 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 5.3:+1741164 | MS.gene40471:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATACTAAAAAAAATAA+CGG | - | chr5.3:1740642-1740661 | None:intergenic | 10.0% |
| !! | AATAATCTTCAAATTATATG+AGG | - | chr5.3:1740399-1740418 | None:intergenic | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr5.3:1740029-1740048 | None:intergenic | 15.0% |
| !!! | CTAAAAAAAATAACGGATTT+AGG | - | chr5.3:1740635-1740654 | None:intergenic | 20.0% |
| !!! | TCAGTATTTGATTTTATTCT+TGG | - | chr5.3:1741389-1741408 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTCTACTACTAA+GGG | + | chr5.3:1740650-1740669 | MS.gene40471:intron | 20.0% |
| !!! | TTTTAGTATTTCTACTACTA+AGG | + | chr5.3:1740649-1740668 | MS.gene40471:intron | 20.0% |
| ! | ATATAAAGTCCCAATTCATT+GGG | - | chr5.3:1741317-1741336 | None:intergenic | 25.0% |
| ! | CAATATTCTTTATTGTCACA+TGG | + | chr5.3:1741358-1741377 | MS.gene40471:CDS | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr5.3:1741595-1741614 | MS.gene40471:CDS | 25.0% |
| ! | TCGAGATTGTTTATTATTGT+TGG | + | chr5.3:1740424-1740443 | MS.gene40471:intron | 25.0% |
| !! | ATTGTATTTATTGAGAGCAT+TGG | - | chr5.3:1741342-1741361 | None:intergenic | 25.0% |
| !! | TTAGTATTTCTACTACTAAG+GGG | + | chr5.3:1740651-1740670 | MS.gene40471:intron | 25.0% |
| !!! | AAGACTATTTGTTGCTTTAA+AGG | + | chr5.3:1741016-1741035 | MS.gene40471:intron | 25.0% |
| !!! | AGACTATTTGTTGCTTTAAA+GGG | + | chr5.3:1741017-1741036 | MS.gene40471:intron | 25.0% |
| !!! | ATTTAGGTTGTGTATAATCA+CGG | - | chr5.3:1740619-1740638 | None:intergenic | 25.0% |
| AAAACCTGTTGAGAATAACA+TGG | - | chr5.3:1740763-1740782 | None:intergenic | 30.0% | |
| AACATTCTACATTTCTGATC+CGG | + | chr5.3:1741619-1741638 | MS.gene40471:CDS | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | + | chr5.3:1741161-1741180 | MS.gene40471:CDS | 30.0% | |
| ATCTTGTAAGGTGTAATAAG+AGG | - | chr5.3:1739979-1739998 | None:intergenic | 30.0% | |
| CAATGAATTGGGACTTTATA+TGG | + | chr5.3:1741316-1741335 | MS.gene40471:CDS | 30.0% | |
| CAATGCTATAGCAGAAAATA+GGG | + | chr5.3:1741502-1741521 | MS.gene40471:CDS | 30.0% | |
| CATATAAAGTCCCAATTCAT+TGG | - | chr5.3:1741318-1741337 | None:intergenic | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr5.3:1741594-1741613 | MS.gene40471:CDS | 30.0% | |
| CTTATTACACCTTACAAGAT+GGG | + | chr5.3:1739979-1739998 | MS.gene40471:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.3:1741133-1741152 | None:intergenic | 30.0% | |
| TAAGGTGTAATAAGAGGAAT+GGG | - | chr5.3:1739973-1739992 | None:intergenic | 30.0% | |
| TATTCTTTATTGTCACATGG+TGG | + | chr5.3:1741361-1741380 | MS.gene40471:CDS | 30.0% | |
| TCAATGCTATAGCAGAAAAT+AGG | + | chr5.3:1741501-1741520 | MS.gene40471:CDS | 30.0% | |
| TCTTATTACACCTTACAAGA+TGG | + | chr5.3:1739978-1739997 | MS.gene40471:CDS | 30.0% | |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr5.3:1741599-1741618 | None:intergenic | 30.0% |
| !! | TGATTGAAGTACTTTTCGTT+TGG | - | chr5.3:1740968-1740987 | None:intergenic | 30.0% |
| !! | TTTGATGGTGTTGAAATTCA+TGG | + | chr5.3:1741095-1741114 | MS.gene40471:CDS | 30.0% |
| ACAGAAGAATGTAGAACCTT+TGG | - | chr5.3:1740330-1740349 | None:intergenic | 35.0% | |
| ACTAACTCAGTATGTCAACT+CGG | + | chr5.3:1740732-1740751 | MS.gene40471:intron | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | - | chr5.3:1740916-1740935 | None:intergenic | 35.0% | |
| ATGTCCATGTTATTCTCAAC+AGG | + | chr5.3:1740756-1740775 | MS.gene40471:intron | 35.0% | |
| CAAAACTGTCCGATCAATAT+TGG | - | chr5.3:1740568-1740587 | None:intergenic | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.3:1740336-1740355 | MS.gene40471:CDS | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | chr5.3:1740128-1740147 | MS.gene40471:CDS | 35.0% | |
| CTGAAGTCATTGACAATATC+AGG | - | chr5.3:1740888-1740907 | None:intergenic | 35.0% | |
| CTTTCTGCATATTGTGCAAA+AGG | - | chr5.3:1741281-1741300 | None:intergenic | 35.0% | |
| GACTTGTCTGTAGAAGATAT+CGG | - | chr5.3:1740804-1740823 | None:intergenic | 35.0% | |
| GCAATTTCAATCTCTCTCAT+AGG | + | chr5.3:1740001-1740020 | MS.gene40471:CDS | 35.0% | |
| GTAAGGTGTAATAAGAGGAA+TGG | - | chr5.3:1739974-1739993 | None:intergenic | 35.0% | |
| TAGGATCTTATTCTAGTGAG+TGG | - | chr5.3:1740128-1740147 | None:intergenic | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | chr5.3:1740198-1740217 | None:intergenic | 35.0% | |
| TTGAAATTGCCCATCTTGTA+AGG | - | chr5.3:1739991-1740010 | None:intergenic | 35.0% | |
| ! | CTTGCATTTCAGAGTTGTTT+TGG | + | chr5.3:1740100-1740119 | MS.gene40471:intron | 35.0% |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | + | chr5.3:1741080-1741099 | MS.gene40471:intron | 35.0% |
| AAGTCCCAATTCATTGGGAT+TGG | - | chr5.3:1741312-1741331 | None:intergenic | 40.0% | |
| AGACTCCAATCCCAATGAAT+TGG | + | chr5.3:1741304-1741323 | MS.gene40471:CDS | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+CGG | + | chr5.3:1741437-1741456 | MS.gene40471:CDS | 40.0% | |
| CCAGTCTGTCCAATATTGAT+CGG | + | chr5.3:1740556-1740575 | MS.gene40471:intron | 40.0% | |
| CTAGACAATCGATCTTGATG+TGG | - | chr5.3:1740486-1740505 | None:intergenic | 40.0% | |
| CTCAATGTGATGCAAATTGC+AGG | + | chr5.3:1741071-1741090 | MS.gene40471:intron | 40.0% | |
| CTGTCCTCTATTACTCTCAA+AGG | + | chr5.3:1740171-1740190 | MS.gene40471:CDS | 40.0% | |
| CTTCCAATGCAAATCGACAT+CGG | - | chr5.3:1741202-1741221 | None:intergenic | 40.0% | |
| CTTCTTATAGCTGAAGCTAC+TGG | + | chr5.3:1740209-1740228 | MS.gene40471:CDS | 40.0% | |
| GAAGCTGTTGTGAATGAGAT+AGG | + | chr5.3:1741227-1741246 | MS.gene40471:CDS | 40.0% | |
| GACTCCAATCCCAATGAATT+GGG | + | chr5.3:1741305-1741324 | MS.gene40471:CDS | 40.0% | |
| GAGGTTATGACAGACAAGAT+GGG | + | chr5.3:1741477-1741496 | MS.gene40471:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.3:1741566-1741585 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1740915-1740934 | MS.gene40471:CDS | 40.0% | |
| GCATGAACAGCATCTACAAT+GGG | - | chr5.3:1740308-1740327 | None:intergenic | 40.0% | |
| GCATTGAGAGCAAATCTCTT+TGG | - | chr5.3:1741575-1741594 | None:intergenic | 40.0% | |
| GTTGAAATTCATGGAGCTCA+TGG | + | chr5.3:1741104-1741123 | MS.gene40471:CDS | 40.0% | |
| TACATTTCTGATCCGGTTGT+TGG | + | chr5.3:1741626-1741645 | MS.gene40471:CDS | 40.0% | |
| TACTCTCAAAGGTCCTCTAA+AGG | + | chr5.3:1740182-1740201 | MS.gene40471:CDS | 40.0% | |
| TAGTCCGTATAACCAACAAC+CGG | - | chr5.3:1741641-1741660 | None:intergenic | 40.0% | |
| TGCTCATTAGTCCATATACC+TGG | - | chr5.3:1740269-1740288 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.3:1740344-1740363 | MS.gene40471:CDS | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | chr5.3:1740178-1740197 | None:intergenic | 40.0% |
| ! | ATGGACTAATGAGCAAGTTG+AGG | + | chr5.3:1740274-1740293 | MS.gene40471:CDS | 40.0% |
| ! | TGATCCGGTTGTTGGTTATA+CGG | + | chr5.3:1741634-1741653 | MS.gene40471:CDS | 40.0% |
| !! | AAATCGACATCGGTTCTCTA+GGG | - | chr5.3:1741192-1741211 | None:intergenic | 40.0% |
| !! | AGGGCAGATCTTGTTGTTTA+TGG | + | chr5.3:1741521-1741540 | MS.gene40471:CDS | 40.0% |
| !! | CAACTCTGAAATGCAAGACA+AGG | - | chr5.3:1740097-1740116 | None:intergenic | 40.0% |
| !! | TTGTTGCTTTAAAGGGCACA+AGG | + | chr5.3:1741024-1741043 | MS.gene40471:intron | 40.0% |
| AAAAATTCTCGCCACCGAGA+AGG | + | chr5.3:1740844-1740863 | MS.gene40471:CDS | 45.0% | |
| AATTGAAAGCCCTTACAGCC+TGG | + | chr5.3:1741412-1741431 | MS.gene40471:CDS | 45.0% | |
| AGGTTGAGGAACTTTGCCAT+AGG | - | chr5.3:1740147-1740166 | None:intergenic | 45.0% | |
| ATCCAGACACACCAGGTATA+TGG | + | chr5.3:1740255-1740274 | MS.gene40471:CDS | 45.0% | |
| CCGATCAATATTGGACAGAC+TGG | - | chr5.3:1740559-1740578 | None:intergenic | 45.0% | |
| CCGTTGAAAGCCTTTCTCAT+TGG | - | chr5.3:1741440-1741459 | None:intergenic | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | + | chr5.3:1741164-1741183 | MS.gene40471:CDS | 45.0% | |
| GAGTAATAGAGGACAGCATG+AGG | - | chr5.3:1740167-1740186 | None:intergenic | 45.0% | |
| GGAGGTTATGACAGACAAGA+TGG | + | chr5.3:1741476-1741495 | MS.gene40471:CDS | 45.0% | |
| GGCATGAACAGCATCTACAA+TGG | - | chr5.3:1740309-1740328 | None:intergenic | 45.0% | |
| GTAGATGCTGTTCATGCCAA+AGG | + | chr5.3:1740311-1740330 | MS.gene40471:CDS | 45.0% | |
| TCATTTGTCCCAAGCCTTCT+CGG | - | chr5.3:1740861-1740880 | None:intergenic | 45.0% | |
| ! | CTAATGAGCAAGTTGAGGCA+TGG | + | chr5.3:1740279-1740298 | MS.gene40471:CDS | 45.0% |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | chr5.3:1740789-1740808 | None:intergenic | 45.0% |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | + | chr5.3:1740771-1740790 | MS.gene40471:intron | 45.0% |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | chr5.3:1740185-1740204 | MS.gene40471:CDS | 45.0% |
| !! | CAAATCGACATCGGTTCTCT+AGG | - | chr5.3:1741193-1741212 | None:intergenic | 45.0% |
| !! | GAACCGATGTCGATTTGCAT+TGG | + | chr5.3:1741196-1741215 | MS.gene40471:CDS | 45.0% |
| AACGGCACTTTCATGGTTGC+AGG | + | chr5.3:1741455-1741474 | MS.gene40471:CDS | 50.0% | |
| AAGCCTTTCTCATTGGCACC+AGG | - | chr5.3:1741433-1741452 | None:intergenic | 50.0% | |
| GAGATAGGAGCAGAGAGAGT+TGG | + | chr5.3:1741242-1741261 | MS.gene40471:CDS | 50.0% | |
| GGCTTTCAACGGCACTTTCA+TGG | + | chr5.3:1741448-1741467 | MS.gene40471:CDS | 50.0% | |
| GTCCATATACCTGGTGTGTC+TGG | - | chr5.3:1740260-1740279 | None:intergenic | 50.0% | |
| TAGAGGACAGCATGAGGTTG+AGG | - | chr5.3:1740161-1740180 | None:intergenic | 50.0% | |
| TCATTGGCACCAGGCTGTAA+GGG | - | chr5.3:1741424-1741443 | None:intergenic | 50.0% | |
| CAAGGCTATCCAGACACACC+AGG | + | chr5.3:1740248-1740267 | MS.gene40471:CDS | 55.0% | |
| CTCATTGGCACCAGGCTGTA+AGG | - | chr5.3:1741425-1741444 | None:intergenic | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5.3:1741458-1741477 | MS.gene40471:CDS | 55.0% | |
| GGTGTCTCTGACACTGCTCA+AGG | + | chr5.3:1740230-1740249 | MS.gene40471:CDS | 55.0% | |
| TTTGTCCCAAGCCTTCTCGG+TGG | - | chr5.3:1740858-1740877 | None:intergenic | 55.0% | |
| ! | CAGCCTGGTGCCAATGAGAA+AGG | + | chr5.3:1741427-1741446 | MS.gene40471:CDS | 55.0% |
| TCTCGCCACCGAGAAGGCTT+GGG | + | chr5.3:1740850-1740869 | MS.gene40471:CDS | 60.0% | |
| TTCTCGCCACCGAGAAGGCT+TGG | + | chr5.3:1740849-1740868 | MS.gene40471:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1739958 | 1741676 | 1739958 | ID=MS.gene40471 |
| chr5.3 | mRNA | 1739958 | 1741676 | 1739958 | ID=MS.gene40471.t1;Parent=MS.gene40471 |
| chr5.3 | exon | 1739958 | 1740022 | 1739958 | ID=MS.gene40471.t1.exon1;Parent=MS.gene40471.t1 |
| chr5.3 | CDS | 1739958 | 1740022 | 1739958 | ID=cds.MS.gene40471.t1;Parent=MS.gene40471.t1 |
| chr5.3 | exon | 1740112 | 1740382 | 1740112 | ID=MS.gene40471.t1.exon2;Parent=MS.gene40471.t1 |
| chr5.3 | CDS | 1740112 | 1740382 | 1740112 | ID=cds.MS.gene40471.t1;Parent=MS.gene40471.t1 |
| chr5.3 | exon | 1740786 | 1740936 | 1740786 | ID=MS.gene40471.t1.exon3;Parent=MS.gene40471.t1 |
| chr5.3 | CDS | 1740786 | 1740936 | 1740786 | ID=cds.MS.gene40471.t1;Parent=MS.gene40471.t1 |
| chr5.3 | exon | 1741093 | 1741676 | 1741093 | ID=MS.gene40471.t1.exon4;Parent=MS.gene40471.t1 |
| chr5.3 | CDS | 1741093 | 1741676 | 1741093 | ID=cds.MS.gene40471.t1;Parent=MS.gene40471.t1 |
| Gene Sequence |
| Protein sequence |
