AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024833

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024833.t1 MTR_5g006780 96.765 371 12 0 1 371 1 371 0.0 750
MS.gene024833.t1 MTR_5g006800 91.914 371 28 1 1 371 1 369 0.0 713
MS.gene024833.t1 MTR_5g006750 87.871 371 45 0 1 371 1 371 0.0 692
MS.gene024833.t1 MTR_5g006670 86.104 367 43 3 5 371 1 359 0.0 650
MS.gene024833.t1 MTR_5g006740 82.561 367 62 1 5 371 1 365 0.0 644
MS.gene024833.t1 MTR_5g006710 83.562 365 52 2 7 371 7 363 0.0 635
MS.gene024833.t1 MTR_5g008040 80.270 370 71 1 1 370 3 370 0.0 627
MS.gene024833.t1 MTR_5g006740 78.474 367 60 2 5 371 1 348 0.0 596
MS.gene024833.t1 MTR_5g006720 73.087 379 62 3 4 371 3 352 0.0 556
MS.gene024833.t1 MTR_3g115600 69.231 364 106 2 8 371 6 363 0.0 531
MS.gene024833.t1 MTR_4g125470 53.083 373 158 5 12 370 19 388 9.03e-139 400
MS.gene024833.t1 MTR_5g006730 76.471 119 26 1 1 119 1 117 5.35e-59 187
MS.gene024833.t1 MTR_3g096570 73.494 83 18 2 173 254 3 82 4.14e-32 122
MS.gene024833.t1 MTR_3g096562 67.045 88 26 1 167 254 162 246 3.00e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024833.t1 AT1G76690 76.280 371 86 1 1 371 3 371 0.0 602
MS.gene024833.t1 AT1G76680 76.860 363 82 1 9 371 9 369 0.0 594
MS.gene024833.t1 AT1G76680 71.907 388 82 2 9 371 9 394 0.0 580
MS.gene024833.t1 AT1G09400 68.675 332 96 2 18 349 1 324 5.53e-174 487
MS.gene024833.t1 AT1G09400 70.741 270 73 1 80 349 2 265 3.69e-144 409
MS.gene024833.t1 AT2G06050 51.194 377 163 5 12 370 12 385 3.53e-135 391
MS.gene024833.t1 AT2G06050 51.194 377 163 5 12 370 12 385 3.53e-135 391
MS.gene024833.t1 AT2G06050 51.194 377 163 5 12 370 12 385 3.53e-135 391
MS.gene024833.t1 AT1G17990 70.000 260 71 3 9 268 6 258 2.13e-134 385
MS.gene024833.t1 AT1G18020 70.000 260 71 3 9 268 6 258 2.13e-134 385
MS.gene024833.t1 AT1G17990 66.923 260 71 4 9 268 6 250 1.11e-125 362

Find 107 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTACTCCTTACAAAAT+TGG 0.174707 5.1:+1427230 MS.gene024833:CDS
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.1:-1428544 None:intergenic
GTTGGAAGAGTTTCTGATTC+TGG 0.251518 5.1:+1427612 MS.gene024833:CDS
TAACGAATTGGGACTTTATA+TGG 0.259709 5.1:+1428297 MS.gene024833:CDS
TACATTTCTGATCCAGTTCT+AGG 0.288195 5.1:+1428607 MS.gene024833:CDS
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5.1:+1427344 MS.gene024833:intron
GTCAATGCCCTCAATAAATA+TGG 0.304167 5.1:+1428319 MS.gene024833:CDS
AAAGGCACTTTCATGGTTGC+AGG 0.311740 5.1:+1428436 MS.gene024833:CDS
CTCCTCTGAACAAGTATAAC+AGG 0.317873 5.1:+1428575 MS.gene024833:CDS
CTCATCGGCACAAGGCTGTC+GGG 0.347385 5.1:-1428403 None:intergenic
ATCCAGACACGCCAGGTATA+TGG 0.350535 5.1:+1427505 MS.gene024833:CDS
GTCCATATACCTGGCGTGTC+TGG 0.353329 5.1:-1427507 None:intergenic
TCAATGCCATAGCTGAAAAC+AGG 0.384447 5.1:+1428482 MS.gene024833:CDS
AGACTCCAACCCTAACGAAT+TGG 0.384935 5.1:+1428285 MS.gene024833:CDS
GGCCTTCAAAGGCACTTTCA+TGG 0.385984 5.1:+1428429 MS.gene024833:CDS
AAACCATTACTTCGAATTTG+TGG 0.394649 5.1:-1427796 None:intergenic
CCAGTTTCTTCATTCAAGAA+AGG 0.397020 5.1:-1428644 None:intergenic
TGGTATTCTTTACTGTCATA+TGG 0.399133 5.1:+1428339 MS.gene024833:CDS
ATATAAAGTCCCAATTCGTT+AGG 0.406105 5.1:-1428295 None:intergenic
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5.1:-1428553 None:intergenic
GAGATAGGAGCTGATAAAGT+TGG 0.416753 5.1:+1428223 MS.gene024833:CDS
GACTCCAACCCTAACGAATT+GGG 0.419325 5.1:+1428286 MS.gene024833:CDS
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5.1:+1428177 MS.gene024833:CDS
AGGGCAGACCTTGTTGTCTA+TGG 0.429742 5.1:+1428502 MS.gene024833:CDS
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5.1:-1427841 None:intergenic
AACCATGAAAGTGCCTTTGA+AGG 0.438354 5.1:-1428431 None:intergenic
GCAAATTCGATCTATCTCAT+AGG 0.439650 5.1:+1427252 MS.gene024833:CDS
AAAGAATACCATATTTATTG+AGG 0.443514 5.1:-1428327 None:intergenic
GTGCAAATTGCAGGATTTGA+TGG 0.444981 5.1:+1428061 MS.gene024833:intron
CAGTTTCTTCATTCAAGAAA+GGG 0.456188 5.1:-1428643 None:intergenic
CTAAAGAGCACGTCGAGGCT+TGG 0.460997 5.1:+1427529 MS.gene024833:CDS
GCATGAACAGCATCCACAAT+GGG 0.464445 5.1:-1427555 None:intergenic
GACTTATCTGTAGATGATAT+TGG 0.464557 5.1:-1427766 None:intergenic
AATGACAGAACAGATGAATA+TGG 0.470052 5.1:+1428142 MS.gene024833:CDS
CATTCTGCATATTCTGCAAA+AGG 0.473703 5.1:-1428259 None:intergenic
TCTCATCGGCACAAGGCTGT+CGG 0.479067 5.1:-1428404 None:intergenic
TTTGATGGGGTTGAAATCCA+TGG 0.479079 5.1:+1428076 MS.gene024833:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5.1:-1428619 None:intergenic
GTCAGAGACACCGGTAGCTT+CGG 0.483228 5.1:-1427469 None:intergenic
CAGCCTTGTGCCGATGAGAA+AGG 0.488883 5.1:+1428408 MS.gene024833:CDS
GTTGAAATCCATGGGGCTCA+TGG 0.498562 5.1:+1428085 MS.gene024833:CDS
GATATTGGTGCCTGTCCATT+CGG 0.502015 5.1:-1427751 None:intergenic
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.1:-1427402 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.502113 5.1:+1428062 MS.gene024833:intron
CAGAGAGCCACCGGCTCTAA+CGG 0.506975 5.1:+1427432 MS.gene024833:CDS
ACACCACAAATTCGAAGTAA+TGG 0.507759 5.1:+1427793 MS.gene024833:CDS
CTCACAAGACAAAGATCCTA+TGG 0.508545 5.1:+1427372 MS.gene024833:CDS
CGTAATCAAGTGAAAATGGC+TGG 0.509462 5.1:+1427182 None:intergenic
AAGAATACCATATTTATTGA+GGG 0.515388 5.1:-1428326 None:intergenic
ATGCCAAATCTGACAAAAGA+AGG 0.517640 5.1:-1427589 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.518438 5.1:+1428208 MS.gene024833:CDS
TCATCGGCACAAGGCTGTCG+GGG 0.521557 5.1:-1428402 None:intergenic
TATAAAGTCCCAATTCGTTA+GGG 0.522588 5.1:-1428294 None:intergenic
GTAAGGAGTAAGAAGAGGAA+TGG 0.526420 5.1:-1427222 None:intergenic
TGGCTCTCTGTGAATAATAG+AGG 0.529112 5.1:-1427419 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5.1:+1428167 MS.gene024833:CDS
TTGATGGGGTTGAAATCCAT+GGG 0.529612 5.1:+1428077 MS.gene024833:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5.1:-1428111 None:intergenic
CAAACCGACAACGGTTCTCA+AGG 0.533263 5.1:-1428171 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5.1:-1427838 None:intergenic
AAGTCCCAATTCGTTAGGGT+TGG 0.539732 5.1:-1428290 None:intergenic
TCACACCACCAAGGCGGCTA+AGG 0.540861 5.1:+1427833 MS.gene024833:CDS
ACTTGCTGCTAGAAATGCTA+TGG 0.544349 5.1:+1427891 MS.gene024833:CDS
GTGGATGCTGTTCATGCTAA+AGG 0.544472 5.1:+1427561 MS.gene024833:CDS
GCTAGAAATGCTATGGAAGC+TGG 0.548470 5.1:+1427898 MS.gene024833:CDS
CAAGGGTATCCAGACACGCC+AGG 0.555989 5.1:+1427498 MS.gene024833:CDS
GGTGTCTCTGACACCGCTCA+AGG 0.561959 5.1:+1427480 MS.gene024833:CDS
AGTTTATCAGCCGAATGGAC+AGG 0.564367 5.1:+1427741 MS.gene024833:intron
GAGAAGACCTCCGTTAGAGC+CGG 0.566754 5.1:-1427442 None:intergenic
CCTTTGAAGGCCTTTCTCAT+CGG 0.568654 5.1:-1428418 None:intergenic
GGAGGTTACGACCGACATGA+TGG 0.569456 5.1:+1428457 MS.gene024833:CDS
CTTCTCATAACCGAAGCTAC+CGG 0.572746 5.1:+1427459 MS.gene024833:CDS
AGGCCTTTCTCATCGGCACA+AGG 0.573077 5.1:-1428411 None:intergenic
TATTATTCACAGAGAGCCAC+CGG 0.583608 5.1:+1427423 MS.gene024833:CDS
TCAACAGTTTATCAGCCGAA+TGG 0.583793 5.1:+1427736 MS.gene024833:intron
CCGATGAGAAAGGCCTTCAA+AGG 0.584601 5.1:+1428418 MS.gene024833:CDS
TGCTCTTTAGTCCATATACC+TGG 0.585344 5.1:-1427516 None:intergenic
AGGTTGTGGAACGTTGCCAT+AGG 0.592868 5.1:-1427388 None:intergenic
GGCACTTTCATGGTTGCAGG+AGG 0.593746 5.1:+1428439 MS.gene024833:CDS
TTTGCAGAATATGCAGAATG+TGG 0.598992 5.1:+1428262 MS.gene024833:CDS
AAGACCTCCGTTAGAGCCGG+TGG 0.607283 5.1:-1427439 None:intergenic
GAGGTTACGACCGACATGAT+GGG 0.607847 5.1:+1428458 MS.gene024833:CDS
TAGGATCTTTGTCTTGTGAG+TGG 0.610235 5.1:-1427369 None:intergenic
AGTTTCTTCATTCAAGAAAG+GGG 0.611551 5.1:-1428642 None:intergenic
TCCCTGTTATACTTGTTCAG+AGG 0.614414 5.1:-1428577 None:intergenic
GTGTCTCTGACACCGCTCAA+GGG 0.616121 5.1:+1427481 MS.gene024833:CDS
CGAGGCTTGGAAACCCATTG+TGG 0.618914 5.1:+1427542 MS.gene024833:CDS
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5.1:-1428180 None:intergenic
CAATGCCATAGCTGAAAACA+GGG 0.621098 5.1:+1428483 MS.gene024833:CDS
TATTCTTTACTGTCATATGG+TGG 0.623581 5.1:+1428342 MS.gene024833:CDS
GTAGGTAGCCATGAGCCCCA+TGG 0.625089 5.1:-1428093 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5.1:-1428170 None:intergenic
AGCATGAACAGCATCCACAA+TGG 0.632785 5.1:-1427556 None:intergenic
TTGAGCGGTGTCAGAGACAC+CGG 0.633714 5.1:-1427478 None:intergenic
GAACCAAGAATGAAAACTGT+TGG 0.645257 5.1:+1428364 MS.gene024833:CDS
GACAGAACAGATGAATATGG+TGG 0.647355 5.1:+1428145 MS.gene024833:CDS
AGAGCCACCGGCTCTAACGG+AGG 0.647688 5.1:+1427435 MS.gene024833:CDS
TGGCATTGATCCCATCATGT+CGG 0.655421 5.1:-1428468 None:intergenic
GCAAATTGCAGGATTTGATG+GGG 0.659323 5.1:+1428063 MS.gene024833:intron
TCCTCTGAACAAGTATAACA+GGG 0.662663 5.1:+1428576 MS.gene024833:CDS
ACAAACGACCATAGACAACA+AGG 0.681842 5.1:-1428510 None:intergenic
TTGCAAAATTCACACCACCA+AGG 0.704294 5.1:+1427824 MS.gene024833:CDS
CGTGTCTGGATACCCTTGAG+CGG 0.705121 5.1:-1427493 None:intergenic
GAATAATAGAGGATAGCATG+AGG 0.726209 5.1:-1427408 None:intergenic
TGATGGGGTTGAAATCCATG+GGG 0.726824 5.1:+1428078 MS.gene024833:CDS
CAAAATTCACACCACCAAGG+CGG 0.740755 5.1:+1427827 MS.gene024833:CDS
ATGGACTAAAGAGCACGTCG+AGG 0.748737 5.1:+1427524 MS.gene024833:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTGAATAATTTTTTATTT+TGG - chr5.1:1427951-1427970 None:intergenic 10.0%
!! AAAGAATACCATATTTATTG+AGG - chr5.1:1428330-1428349 None:intergenic 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5.1:1428329-1428348 None:intergenic 20.0%
!! ATAAACTGTTGAAAATAACA+TGG - chr5.1:1427728-1427747 None:intergenic 20.0%
!! TATGAACATATGTGTATAAT+AGG - chr5.1:1427666-1427685 None:intergenic 20.0%
!! TTGAAAATAACATGGAAAAT+GGG - chr5.1:1427720-1427739 None:intergenic 20.0%
! GTTGAAAATAACATGGAAAA+TGG - chr5.1:1427721-1427740 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5.1:1427344-1427363 MS.gene024833:intron 25.0%
AAACCATTACTTCGAATTTG+TGG - chr5.1:1427799-1427818 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.1:1428142-1428161 MS.gene024833:CDS 30.0%
ATATAAAGTCCCAATTCGTT+AGG - chr5.1:1428298-1428317 None:intergenic 30.0%
ATTATGCAACATACTAACTG+TGG + chr5.1:1428039-1428058 MS.gene024833:intron 30.0%
CTTCTTACTCCTTACAAAAT+TGG + chr5.1:1427230-1427249 MS.gene024833:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.1:1428114-1428133 None:intergenic 30.0%
GACTTATCTGTAGATGATAT+TGG - chr5.1:1427769-1427788 None:intergenic 30.0%
TAACGAATTGGGACTTTATA+TGG + chr5.1:1428297-1428316 MS.gene024833:CDS 30.0%
TATAAAGTCCCAATTCGTTA+GGG - chr5.1:1428297-1428316 None:intergenic 30.0%
TATTCTTTACTGTCATATGG+TGG + chr5.1:1428342-1428361 MS.gene024833:CDS 30.0%
TGGTATTCTTTACTGTCATA+TGG + chr5.1:1428339-1428358 MS.gene024833:CDS 30.0%
! ATTTTGTAAGGAGTAAGAAG+AGG - chr5.1:1427230-1427249 None:intergenic 30.0%
! TCGAATTTGCCAATTTTGTA+AGG - chr5.1:1427242-1427261 None:intergenic 30.0%
!! AGATCTTTTTGTTGCTTCAA+AGG + chr5.1:1427998-1428017 MS.gene024833:intron 30.0%
!! GATCTTTTTGTTGCTTCAAA+GGG + chr5.1:1427999-1428018 MS.gene024833:intron 30.0%
ACACCACAAATTCGAAGTAA+TGG + chr5.1:1427793-1427812 MS.gene024833:CDS 35.0%
ATGCCAAATCTGACAAAAGA+AGG - chr5.1:1427592-1427611 None:intergenic 35.0%
CATTCTGCATATTCTGCAAA+AGG - chr5.1:1428262-1428281 None:intergenic 35.0%
GAACCAAGAATGAAAACTGT+TGG + chr5.1:1428364-1428383 MS.gene024833:CDS 35.0%
GAATAATAGAGGATAGCATG+AGG - chr5.1:1427411-1427430 None:intergenic 35.0%
GCAAATTCGATCTATCTCAT+AGG + chr5.1:1427252-1427271 MS.gene024833:CDS 35.0%
GTCAATGCCCTCAATAAATA+TGG + chr5.1:1428319-1428338 MS.gene024833:CDS 35.0%
TACATTTCTGATCCAGTTCT+AGG + chr5.1:1428607-1428626 MS.gene024833:CDS 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5.1:1428622-1428641 None:intergenic 35.0%
TCCTCTGAACAAGTATAACA+GGG + chr5.1:1428576-1428595 MS.gene024833:CDS 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.1:1428062-1428081 MS.gene024833:intron 35.0%
TTTGCAGAATATGCAGAATG+TGG + chr5.1:1428262-1428281 MS.gene024833:CDS 35.0%
! CTACCTTCTTTTGTCAGATT+TGG + chr5.1:1427586-1427605 MS.gene024833:CDS 35.0%
! TCACCAACAGTTTTCATTCT+TGG - chr5.1:1428370-1428389 None:intergenic 35.0%
! TTTTGTCAGATTTGGCATGT+TGG + chr5.1:1427594-1427613 MS.gene024833:CDS 35.0%
ACAAACGACCATAGACAACA+AGG - chr5.1:1428513-1428532 None:intergenic 40.0%
CAATGCCATAGCTGAAAACA+GGG + chr5.1:1428483-1428502 MS.gene024833:CDS 40.0%
CTCACAAGACAAAGATCCTA+TGG + chr5.1:1427372-1427391 MS.gene024833:CDS 40.0%
CTCCTCTGAACAAGTATAAC+AGG + chr5.1:1428575-1428594 MS.gene024833:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.1:1428208-1428227 MS.gene024833:CDS 40.0%
GACAGAACAGATGAATATGG+TGG + chr5.1:1428145-1428164 MS.gene024833:CDS 40.0%
GAGATAGGAGCTGATAAAGT+TGG + chr5.1:1428223-1428242 MS.gene024833:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.1:1428547-1428566 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.1:1428063-1428082 MS.gene024833:intron 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5.1:1428556-1428575 None:intergenic 40.0%
GTAAGGAGTAAGAAGAGGAA+TGG - chr5.1:1427225-1427244 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.1:1428061-1428080 MS.gene024833:intron 40.0%
GTTGGAAGAGTTTCTGATTC+TGG + chr5.1:1427612-1427631 MS.gene024833:CDS 40.0%
TAGGATCTTTGTCTTGTGAG+TGG - chr5.1:1427372-1427391 None:intergenic 40.0%
TATTATTCACAGAGAGCCAC+CGG + chr5.1:1427423-1427442 MS.gene024833:CDS 40.0%
TCAACAGTTTATCAGCCGAA+TGG + chr5.1:1427736-1427755 MS.gene024833:intron 40.0%
TCAATGCCATAGCTGAAAAC+AGG + chr5.1:1428482-1428501 MS.gene024833:CDS 40.0%
TCCCTGTTATACTTGTTCAG+AGG - chr5.1:1428580-1428599 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.1:1427519-1427538 None:intergenic 40.0%
TGGCTCTCTGTGAATAATAG+AGG - chr5.1:1427422-1427441 None:intergenic 40.0%
TTGATGGGGTTGAAATCCAT+GGG + chr5.1:1428077-1428096 MS.gene024833:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5.1:1427824-1427843 MS.gene024833:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.1:1428076-1428095 MS.gene024833:CDS 40.0%
! ACTTGCTGCTAGAAATGCTA+TGG + chr5.1:1427891-1427910 MS.gene024833:CDS 40.0%
!! AACCATGAAAGTGCCTTTGA+AGG - chr5.1:1428434-1428453 None:intergenic 40.0%
AAACCGACAACGGTTCTCAA+GGG - chr5.1:1428173-1428192 None:intergenic 45.0%
AAGTCCCAATTCGTTAGGGT+TGG - chr5.1:1428293-1428312 None:intergenic 45.0%
AGACTCCAACCCTAACGAAT+TGG + chr5.1:1428285-1428304 MS.gene024833:CDS 45.0%
AGCATGAACAGCATCCACAA+TGG - chr5.1:1427559-1427578 None:intergenic 45.0%
AGTTTATCAGCCGAATGGAC+AGG + chr5.1:1427741-1427760 MS.gene024833:intron 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5.1:1427827-1427846 MS.gene024833:CDS 45.0%
CTAACTGTGGTGCAAATTGC+AGG + chr5.1:1428052-1428071 MS.gene024833:intron 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5.1:1428183-1428202 None:intergenic 45.0%
CTTCTCATAACCGAAGCTAC+CGG + chr5.1:1427459-1427478 MS.gene024833:CDS 45.0%
GACTCCAACCCTAACGAATT+GGG + chr5.1:1428286-1428305 MS.gene024833:CDS 45.0%
GCATGAACAGCATCCACAAT+GGG - chr5.1:1427558-1427577 None:intergenic 45.0%
GCTAGAAATGCTATGGAAGC+TGG + chr5.1:1427898-1427917 MS.gene024833:CDS 45.0%
GTGGATGCTGTTCATGCTAA+AGG + chr5.1:1427561-1427580 MS.gene024833:CDS 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.1:1427405-1427424 None:intergenic 45.0%
TGATGGGGTTGAAATCCATG+GGG + chr5.1:1428078-1428097 MS.gene024833:CDS 45.0%
! CCTTTGAAGGCCTTTCTCAT+CGG - chr5.1:1428421-1428440 None:intergenic 45.0%
! GATATTGGTGCCTGTCCATT+CGG - chr5.1:1427754-1427773 None:intergenic 45.0%
!! AAAGGCACTTTCATGGTTGC+AGG + chr5.1:1428436-1428455 MS.gene024833:CDS 45.0%
!! TGGCATTGATCCCATCATGT+CGG - chr5.1:1428471-1428490 None:intergenic 45.0%
!! TTGTTGCTTCAAAGGGCACT+AGG + chr5.1:1428006-1428025 MS.gene024833:intron 45.0%
AGGTTGTGGAACGTTGCCAT+AGG - chr5.1:1427391-1427410 None:intergenic 50.0%
ATCCAGACACGCCAGGTATA+TGG + chr5.1:1427505-1427524 MS.gene024833:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5.1:1428174-1428193 None:intergenic 50.0%
CCGATGAGAAAGGCCTTCAA+AGG + chr5.1:1428418-1428437 MS.gene024833:CDS 50.0%
GAGGTTACGACCGACATGAT+GGG + chr5.1:1428458-1428477 MS.gene024833:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.1:1428167-1428186 MS.gene024833:CDS 50.0%
GTTGAAATCCATGGGGCTCA+TGG + chr5.1:1428085-1428104 MS.gene024833:CDS 50.0%
! AGGGCAGACCTTGTTGTCTA+TGG + chr5.1:1428502-1428521 MS.gene024833:CDS 50.0%
! ATGGACTAAAGAGCACGTCG+AGG + chr5.1:1427524-1427543 MS.gene024833:CDS 50.0%
! GTCTGCCCTGTTTTCAGCTA+TGG - chr5.1:1428491-1428510 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5.1:1428177-1428196 MS.gene024833:CDS 50.0%
!! GGCCTTCAAAGGCACTTTCA+TGG + chr5.1:1428429-1428448 MS.gene024833:CDS 50.0%
AGGCCTTTCTCATCGGCACA+AGG - chr5.1:1428414-1428433 None:intergenic 55.0%
CGAGGCTTGGAAACCCATTG+TGG + chr5.1:1427542-1427561 MS.gene024833:CDS 55.0%
CGTGTCTGGATACCCTTGAG+CGG - chr5.1:1427496-1427515 None:intergenic 55.0%
GAGAAGACCTCCGTTAGAGC+CGG - chr5.1:1427445-1427464 None:intergenic 55.0%
GGAGGTTACGACCGACATGA+TGG + chr5.1:1428457-1428476 MS.gene024833:CDS 55.0%
GGCACTTTCATGGTTGCAGG+AGG + chr5.1:1428439-1428458 MS.gene024833:CDS 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5.1:1427472-1427491 None:intergenic 55.0%
GTCCATATACCTGGCGTGTC+TGG - chr5.1:1427510-1427529 None:intergenic 55.0%
GTGTCTCTGACACCGCTCAA+GGG + chr5.1:1427481-1427500 MS.gene024833:CDS 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5.1:1427844-1427863 None:intergenic 55.0%
TCTCATCGGCACAAGGCTGT+CGG - chr5.1:1428407-1428426 None:intergenic 55.0%
! CAGCCTTGTGCCGATGAGAA+AGG + chr5.1:1428408-1428427 MS.gene024833:CDS 55.0%
! CTAAAGAGCACGTCGAGGCT+TGG + chr5.1:1427529-1427548 MS.gene024833:CDS 55.0%
! TTGAGCGGTGTCAGAGACAC+CGG - chr5.1:1427481-1427500 None:intergenic 55.0%
AAGACCTCCGTTAGAGCCGG+TGG - chr5.1:1427442-1427461 None:intergenic 60.0%
CTCATCGGCACAAGGCTGTC+GGG - chr5.1:1428406-1428425 None:intergenic 60.0%
GGTGTCTCTGACACCGCTCA+AGG + chr5.1:1427480-1427499 MS.gene024833:CDS 60.0%
GTAGGTAGCCATGAGCCCCA+TGG - chr5.1:1428096-1428115 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG + chr5.1:1427833-1427852 MS.gene024833:CDS 60.0%
TCATCGGCACAAGGCTGTCG+GGG - chr5.1:1428405-1428424 None:intergenic 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5.1:1427841-1427860 None:intergenic 60.0%
!! CAAGGGTATCCAGACACGCC+AGG + chr5.1:1427498-1427517 MS.gene024833:CDS 60.0%
!! CAGAGAGCCACCGGCTCTAA+CGG + chr5.1:1427432-1427451 MS.gene024833:CDS 60.0%
!! AGAGCCACCGGCTCTAACGG+AGG + chr5.1:1427435-1427454 MS.gene024833:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1427197 1428657 1427197 ID=MS.gene024833
chr5.1 mRNA 1427197 1428657 1427197 ID=MS.gene024833.t1;Parent=MS.gene024833
chr5.1 exon 1427197 1427273 1427197 ID=MS.gene024833.t1.exon1;Parent=MS.gene024833.t1
chr5.1 CDS 1427197 1427273 1427197 ID=cds.MS.gene024833.t1;Parent=MS.gene024833.t1
chr5.1 exon 1427356 1427633 1427356 ID=MS.gene024833.t1.exon2;Parent=MS.gene024833.t1
chr5.1 CDS 1427356 1427633 1427356 ID=cds.MS.gene024833.t1;Parent=MS.gene024833.t1
chr5.1 exon 1427743 1427919 1427743 ID=MS.gene024833.t1.exon3;Parent=MS.gene024833.t1
chr5.1 CDS 1427743 1427919 1427743 ID=cds.MS.gene024833.t1;Parent=MS.gene024833.t1
chr5.1 exon 1428074 1428657 1428074 ID=MS.gene024833.t1.exon4;Parent=MS.gene024833.t1
chr5.1 CDS 1428074 1428657 1428074 ID=cds.MS.gene024833.t1;Parent=MS.gene024833.t1
Gene Sequence

>MS.gene024833

ATGGCTGGTATTGTTGAATCTGATACCATTCCTCTTCTTACTCCTTACAAAATTGGCAAATTCGATCTATCTCATAGGTATTTTAATTATCTTTTCATATAATTTCATATTCAAGTGCTCAAACGTTCACATAATAATAACTAACTCATTTCATTTCAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCCTATGGCAACGTTCCACAACCTCATGCTATCCTCTATTATTCACAGAGAGCCACCGGCTCTAACGGAGGTCTTCTCATAACCGAAGCTACCGGTGTCTCTGACACCGCTCAAGGGTATCCAGACACGCCAGGTATATGGACTAAAGAGCACGTCGAGGCTTGGAAACCCATTGTGGATGCTGTTCATGCTAAAGGTGCTACCTTCTTTTGTCAGATTTGGCATGTTGGAAGAGTTTCTGATTCTGGTATGTTCTATTTCTTCAAAAAATTTATGCCTATTATACACATATGTTCATACACATTATGTACACACTCGTTAATATATATGCCCATTTTCCATGTTATTTTCAACAGTTTATCAGCCGAATGGACAGGCACCAATATCATCTACAGATAAGTCACTCACACCACAAATTCGAAGTAATGGTTTTAATATTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTTCGAACATTGTCAATGACTTCAGACTTGCTGCTAGAAATGCTATGGAAGCTGGTAACTTTACTAAACTTTACAAATGTCTCCAAAATAAAAAATTATTCAATGTATCGTAATACAATGTCTGTGATACATAGATCTTTTTGTTGCTTCAAAGGGCACTAGGTCATTTTACAATTATGCAACATACTAACTGTGGTGCAAATTGCAGGATTTGATGGGGTTGAAATCCATGGGGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAGCTGATAAAGTTGGAATTAGACTATCACCTTTTGCAGAATATGCAGAATGTGGAGACTCCAACCCTAACGAATTGGGACTTTATATGGTCAATGCCCTCAATAAATATGGTATTCTTTACTGTCATATGGTGGAACCAAGAATGAAAACTGTTGGTGAAAAAACTGAAAGCCCCGACAGCCTTGTGCCGATGAGAAAGGCCTTCAAAGGCACTTTCATGGTTGCAGGAGGTTACGACCGACATGATGGGATCAATGCCATAGCTGAAAACAGGGCAGACCTTGTTGTCTATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTGAACAAGTATAACAGGGAGACGTTCTACATTTCTGATCCAGTTCTAGGTTATACTGACTACCCCTTTCTTGAATGA
Protein sequence

>MS.gene024833.t1

MAGIVESDTIPLLTPYKIGKFDLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRATGSNGGLLITEATGVSDTAQGYPDTPGIWTKEHVEAWKPIVDAVHAKGATFFCQIWHVGRVSDSVYQPNGQAPISSTDKSLTPQIRSNGFNIAKFTPPRRLRTDEISNIVNDFRLAARNAMEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGADKVGIRLSPFAEYAECGDSNPNELGLYMVNALNKYGILYCHMVEPRMKTVGEKTESPDSLVPMRKAFKGTFMVAGGYDRHDGINAIAENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYISDPVLGYTDYPFLE