AlfalfaGEDB | MS.gene039914

M. sativa cultivar XinJiangDaYe / MS.gene039914

KEGG: K05894
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00724.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039914.t1	XP_024639103.1	91.9	357	29	0	7	363	3	359	5.40E-194	686.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039914.t1	B9FSC8	74.6	358	85	1	11	362	6	363	5.6e-163	575.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039914.t1	G7K3R3	91.6	357	30	0	7	363	3	359	1.9e-193	684.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene019336	MS.gene039914	PPI
MS.gene21808	MS.gene039914	PPI
MS.gene024840	MS.gene039914	PPI
MS.gene012217	MS.gene039914	PPI
MS.gene058057	MS.gene039914	PPI
MS.gene024836	MS.gene039914	PPI
MS.gene21811	MS.gene039914	PPI
MS.gene21813	MS.gene039914	PPI
MS.gene97626	MS.gene039914	PPI
MS.gene016703	MS.gene039914	PPI
MS.gene024832	MS.gene039914	PPI
MS.gene21807	MS.gene039914	PPI
MS.gene039914	MS.gene28210	PPI
MS.gene40474	MS.gene039914	PPI
MS.gene001054	MS.gene039914	PPI
MS.gene024834	MS.gene039914	PPI
MS.gene001051	MS.gene039914	PPI
MS.gene024835	MS.gene039914	PPI
MS.gene024833	MS.gene039914	PPI
MS.gene21732	MS.gene039914	PPI
MS.gene60448	MS.gene039914	PPI
MS.gene024831	MS.gene039914	PPI
MS.gene001055	MS.gene039914	PPI
MS.gene50903	MS.gene039914	PPI
MS.gene039914	MS.gene40481	PPI
MS.gene23576	MS.gene039914	PPI
MS.gene024838	MS.gene039914	PPI
MS.gene40480	MS.gene039914	PPI
MS.gene057956	MS.gene039914	PPI
MS.gene001056	MS.gene039914	PPI
MS.gene40481	MS.gene039914	PPI
MS.gene21804	MS.gene039914	PPI
MS.gene40471	MS.gene039914	PPI
MS.gene46805	MS.gene039914	PPI
MS.gene051818	MS.gene039914	PPI
MS.gene26506	MS.gene039914	PPI
MS.gene21810	MS.gene039914	PPI
MS.gene001053	MS.gene039914	PPI
MS.gene40478	MS.gene039914	PPI
MS.gene24828	MS.gene039914	PPI
MS.gene21812	MS.gene039914	PPI
MS.gene28210	MS.gene039914	PPI
MS.gene79044	MS.gene039914	PPI
MS.gene82304	MS.gene039914	PPI
MS.gene001050	MS.gene039914	PPI
MS.gene40483	MS.gene039914	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039914.t1	MTR_5g006710	90.083	363	36	0	1	363	1	363	0.0	689
MS.gene039914.t1	MTR_5g006670	91.597	357	30	0	7	363	3	359	0.0	687
MS.gene039914.t1	MTR_5g006780	84.636	371	49	3	1	363	1	371	0.0	645
MS.gene039914.t1	MTR_5g006800	82.114	369	60	1	1	363	1	369	0.0	634
MS.gene039914.t1	MTR_5g006740	80.992	363	63	1	7	363	3	365	0.0	619
MS.gene039914.t1	MTR_5g006750	79.515	371	68	2	1	363	1	371	0.0	616
MS.gene039914.t1	MTR_5g008040	77.989	368	75	1	1	362	3	370	0.0	606
MS.gene039914.t1	MTR_5g006740	76.860	363	61	3	7	363	3	348	0.0	572
MS.gene039914.t1	MTR_3g115600	68.767	365	110	2	1	363	1	363	0.0	534
MS.gene039914.t1	MTR_5g006720	71.467	375	63	3	6	363	5	352	0.0	533
MS.gene039914.t1	MTR_4g125470	54.054	370	151	3	12	362	19	388	2.81e-144	414
MS.gene039914.t1	MTR_5g006730	78.448	116	25	0	1	116	1	116	6.24e-63	197
MS.gene039914.t1	MTR_3g096570	78.873	71	15	0	169	239	8	78	8.64e-32	120
MS.gene039914.t1	MTR_3g096562	76.389	72	17	0	159	230	162	233	7.25e-30	118

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039914.t1	AT1G76690	72.358	369	96	1	1	363	3	371	0.0	572
MS.gene039914.t1	AT1G76680	72.358	369	96	2	1	363	1	369	0.0	572
MS.gene039914.t1	AT1G76680	67.766	394	96	3	1	363	1	394	0.0	558
MS.gene039914.t1	AT1G09400	69.782	321	97	0	21	341	4	324	1.61e-178	498
MS.gene039914.t1	AT1G09400	70.455	264	78	0	78	341	2	265	5.73e-145	411
MS.gene039914.t1	AT2G06050	51.169	385	165	3	1	362	1	385	2.37e-140	404
MS.gene039914.t1	AT2G06050	51.169	385	165	3	1	362	1	385	2.37e-140	404
MS.gene039914.t1	AT2G06050	51.169	385	165	3	1	362	1	385	2.37e-140	404
MS.gene039914.t1	AT1G17990	69.380	258	76	2	5	260	2	258	1.64e-135	387
MS.gene039914.t1	AT1G18020	69.380	258	76	2	5	260	2	258	1.64e-135	387
MS.gene039914.t1	AT1G17990	66.279	258	76	3	5	260	2	250	6.45e-127	365

Find 87 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAAACCTCTTTGGCAAATC+TGG	0.210347	3.1:-13557238	None:intergenic
CTCCTCTTAACAAGTATAAT+AGG	0.228308	3.1:+13557269	MS.gene039914:CDS
AGGGCAGATCTTGTAGTTTA+TGG	0.251067	3.1:+13557196	MS.gene039914:CDS
CTGAAGTCATTGACAATATC+AGG	0.283543	3.1:-13556559	None:intergenic
TAGTCTAATTCCAACTTTAT+CGG	0.320112	3.1:-13556927	None:intergenic
ATCCAGACAGCCCAGGTATA+TGG	0.329383	3.1:+13555946	MS.gene039914:CDS
GCATTAAGTGCAAACCTCTT+TGG	0.332483	3.1:-13557247	None:intergenic
TATAAGAAGACCACCTTTAG+AGG	0.341560	3.1:-13555886	None:intergenic
GGCTTTCAATGGCACTTTCA+TGG	0.346532	3.1:+13557123	MS.gene039914:CDS
AAATGCATTGGGACTTCATA+TGG	0.358879	3.1:+13556991	MS.gene039914:CDS
CTCATTGGCACAAGGCTGTA+AGG	0.367432	3.1:-13557097	None:intergenic
GAATCGTTGTCGATTTCCTT+TGG	0.368620	3.1:+13556871	MS.gene039914:CDS
TCCCTATTATACTTGTTAAG+AGG	0.369675	3.1:-13557271	None:intergenic
TCATCTGTCCCAAGCCTTCT+CGG	0.369862	3.1:-13556532	None:intergenic
CTTCTTACACCTTACAAGAT+AGG	0.370674	3.1:+13555661	MS.gene039914:CDS
CAATGGCACTTTCATGGTTG+CGG	0.371044	3.1:+13557129	MS.gene039914:CDS
TTGAATTTGCCTATCTTGTA+AGG	0.371737	3.1:-13555670	None:intergenic
GTCCATATACCTGGGCTGTC+TGG	0.372045	3.1:-13555948	None:intergenic
ATATGAAGTCCCAATGCATT+TGG	0.375541	3.1:-13556989	None:intergenic
TCAATGCTATAGCTGAAAAC+AGG	0.375838	3.1:+13557176	MS.gene039914:CDS
TGATCCGGTTGTAGGTTATA+CGG	0.380846	3.1:+13557309	MS.gene039914:CDS
TACATTTCTGATCCGGTTGT+AGG	0.387959	3.1:+13557301	MS.gene039914:CDS
AATGGCACTTTCATGGTTGC+GGG	0.393208	3.1:+13557130	MS.gene039914:CDS
TCCTCTTAACAAGTATAATA+GGG	0.406224	3.1:+13557270	MS.gene039914:CDS
TTCTCGCTACCGAGAAGGCT+TGG	0.406585	3.1:+13556523	MS.gene039914:CDS
AAAGAATATTGTACTTATTG+AGG	0.409340	3.1:-13557021	None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG	0.410004	3.1:-13557112	None:intergenic
AGGACCTTTGAGAGTAATAG+AGG	0.421466	3.1:-13555866	None:intergenic
GCATGAACAGCATCTACAAC+AGG	0.426710	3.1:-13555996	None:intergenic
AACATTCTACATTTCTGATC+CGG	0.427062	3.1:+13557294	MS.gene039914:CDS
CAGCCTTGTGCCAATGAGAA+AGG	0.431994	3.1:+13557102	MS.gene039914:CDS
GAAGCAGTTGTAAATGAGAT+AGG	0.432088	3.1:+13556902	MS.gene039914:CDS
GCAAATTCAATCTCTCTCAT+AGG	0.433596	3.1:+13555683	MS.gene039914:CDS
CTTTCTGCATATTCAGCAAA+TGG	0.438653	3.1:-13556953	None:intergenic
GATATCGGTGCTTGTCCATT+CGG	0.438814	3.1:-13556460	None:intergenic
GACTCTAATCCAAATGCATT+GGG	0.453689	3.1:+13556980	MS.gene039914:CDS
TGCTCTTTAGTCCATATACC+TGG	0.459561	3.1:-13555957	None:intergenic
AAGAATATTGTACTTATTGA+GGG	0.462924	3.1:-13557020	None:intergenic
TCTCGCTACCGAGAAGGCTT+GGG	0.476998	3.1:+13556524	MS.gene039914:CDS
GAGATAGGAGCCGATAAAGT+TGG	0.478784	3.1:+13556917	MS.gene039914:CDS
GTCGGATACACCAGTAGCTT+CGG	0.479603	3.1:-13555910	None:intergenic
CTCACTAGAATAAGATCCTA+TGG	0.486036	3.1:+13555819	MS.gene039914:CDS
CGAATCCAGATTTGCCAAAG+AGG	0.491902	3.1:+13557233	MS.gene039914:CDS
ATTGCTTGTGAGTGACTTGT+CGG	0.493116	3.1:-13556488	None:intergenic
CTTCTTATAGCCGAAGCTAC+TGG	0.505350	3.1:+13555900	MS.gene039914:CDS
AGACTCTAATCCAAATGCAT+TGG	0.510548	3.1:+13556979	MS.gene039914:CDS
TAAGGTGTAAGAAGAGGAAT+GGG	0.514396	3.1:-13555652	None:intergenic
TTGTCCTCTATTACTCTCAA+AGG	0.525613	3.1:+13555862	MS.gene039914:CDS
TCATTGGCACAAGGCTGTAA+GGG	0.525679	3.1:-13557096	None:intergenic
GCAAGAAATGCTATTGAAGC+TGG	0.528089	3.1:+13556589	MS.gene039914:CDS
GTAAGGTGTAAGAAGAGGAA+TGG	0.528759	3.1:-13555653	None:intergenic
TACTCTCAAAGGTCCTCTAA+AGG	0.530036	3.1:+13555873	MS.gene039914:CDS
CTTTCATGAATTGTTCAAGT+AGG	0.530510	3.1:-13556805	None:intergenic
GACTTGTCGGTAGAAGATAT+CGG	0.533594	3.1:-13556475	None:intergenic
GTCGAAATCCATGGAGCTCA+TGG	0.534699	3.1:+13556779	MS.gene039914:CDS
TTTGATGGTGTCGAAATCCA+TGG	0.539312	3.1:+13556770	MS.gene039914:CDS
GTAGATGCTGTTCATGCTAA+AGG	0.548123	3.1:+13556002	MS.gene039914:CDS
TGGATACCCTTGAGCTGTGT+CGG	0.553060	3.1:-13555928	None:intergenic
CCAATGAGAAAGGCTTTCAA+TGG	0.561406	3.1:+13557112	MS.gene039914:CDS
AAGCCTTTCTCATTGGCACA+AGG	0.563142	3.1:-13557105	None:intergenic
TAGAGGACAACATGTGGTTG+AGG	0.573654	3.1:-13555849	None:intergenic
GGTGTATCCGACACAGCTCA+AGG	0.574972	3.1:+13555921	MS.gene039914:CDS
TAGTCCGTATAACCTACAAC+CGG	0.576852	3.1:-13557313	None:intergenic
CAATATTCTTTACTGTCACA+TGG	0.576936	3.1:+13557033	MS.gene039914:CDS
AGCTTCAATAGCATTTCTTG+CGG	0.576970	3.1:-13556587	None:intergenic
GCTCTTTAGTCCATATACCT+GGG	0.578858	3.1:-13555956	None:intergenic
CAAGGGTATCCAGACAGCCC+AGG	0.584387	3.1:+13555939	MS.gene039914:CDS
GGCACTTTCATGGTTGCGGG+AGG	0.587792	3.1:+13557133	MS.gene039914:CDS
AATGACAGAACAGATGAATA+CGG	0.588235	3.1:+13556836	MS.gene039914:CDS
GAAATCGACAACGATTCTCA+AGG	0.593087	3.1:-13556865	None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG	0.595976	3.1:-13556787	None:intergenic
GGAGGCTATGACAGACAAGA+CGG	0.604358	3.1:+13557151	MS.gene039914:CDS
TAGGATCTTATTCTAGTGAG+TGG	0.614903	3.1:-13555816	None:intergenic
GAGGCTATGACAGACAAGAC+GGG	0.616560	3.1:+13557152	MS.gene039914:CDS
ATCTTGTAAGGTGTAAGAAG+AGG	0.617684	3.1:-13555658	None:intergenic
CAATGCTATAGCTGAAAACA+GGG	0.617928	3.1:+13557177	MS.gene039914:CDS
TGGTTGAGGAACATTGCCAT+AGG	0.622865	3.1:-13555835	None:intergenic
ACTGCTTCAACAATTTCCAA+AGG	0.625347	3.1:-13556887	None:intergenic
AAATCGACAACGATTCTCAA+GGG	0.633730	3.1:-13556864	None:intergenic
TTTGCTGAATATGCAGAAAG+CGG	0.633878	3.1:+13556956	MS.gene039914:CDS
TCTCAAAGGTCCTCTAAAGG+TGG	0.638482	3.1:+13555876	MS.gene039914:CDS
CTAAAGAGCAAGTTGAGGCG+TGG	0.641191	3.1:+13555970	MS.gene039914:CDS
GTGTATCCGACACAGCTCAA+GGG	0.660265	3.1:+13555922	MS.gene039914:CDS
TATTCTTTACTGTCACATGG+TGG	0.684787	3.1:+13557036	MS.gene039914:CDS
ATGGACTAAAGAGCAAGTTG+AGG	0.687634	3.1:+13555965	MS.gene039914:CDS
GAGTAATAGAGGACAACATG+TGG	0.696474	3.1:-13555855	None:intergenic
GACAGAACAGATGAATACGG+TGG	0.702185	3.1:+13556839	MS.gene039914:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATCTTCAAATTATATG+AGG	-	chr3.1:13556096-13556115	None:intergenic	15.0%
!!	GTAGTAATACTAAAAAATAA+CGG	-	chr3.1:13556333-13556352	None:intergenic	15.0%
!!!	AATTTGAAGATTATTTTAGT+TGG	+	chr3.1:13556101-13556120	MS.gene039914:intron	15.0%
!!!	ATTGAAATTGAAAGTATAAT+AGG	-	chr3.1:13555711-13555730	None:intergenic	15.0%
!!	AAAGAATATTGTACTTATTG+AGG	-	chr3.1:13557024-13557043	None:intergenic	20.0%
!!	AAGAATATTGTACTTATTGA+GGG	-	chr3.1:13557023-13557042	None:intergenic	20.0%
!!	TTTAGTATTACTACTACTAA+GGG	+	chr3.1:13556339-13556358	MS.gene039914:intron	20.0%
!!!	ATACTAAAAAATAACGGATT+TGG	-	chr3.1:13556327-13556346	None:intergenic	20.0%
!!!	TACTAAAAAATAACGGATTT+GGG	-	chr3.1:13556326-13556345	None:intergenic	20.0%
!!!	TTTTAGTATTACTACTACTA+AGG	+	chr3.1:13556338-13556357	MS.gene039914:intron	20.0%
!	AAAACCTGTTGAGAATAAAA+TGG	-	chr3.1:13556437-13556456	None:intergenic	25.0%
!	CAAAACTATCCAATCAATAT+TGG	-	chr3.1:13556259-13556278	None:intergenic	25.0%
!	TAGTCTAATTCCAACTTTAT+CGG	-	chr3.1:13556930-13556949	None:intergenic	25.0%
!	TCCTCTTAACAAGTATAATA+GGG	+	chr3.1:13557270-13557289	MS.gene039914:CDS	25.0%
!	TTAGTATTACTACTACTAAG+GGG	+	chr3.1:13556340-13556359	MS.gene039914:intron	25.0%
!!	TTGTTATTGTTGGATTTAGA+TGG	+	chr3.1:13556127-13556146	MS.gene039914:intron	25.0%
!!!	AGGACTATTTGTTGATTTAA+AGG	+	chr3.1:13556691-13556710	MS.gene039914:intron	25.0%
!!!	GGACTATTTGTTGATTTAAA+GGG	+	chr3.1:13556692-13556711	MS.gene039914:intron	25.0%
!!!	TACTGATATTTTTCAGAAAC+AGG	+	chr3.1:13556671-13556690	MS.gene039914:intron	25.0%
!!!	TTGAAGATTATTTTAGTTGG+AGG	+	chr3.1:13556104-13556123	MS.gene039914:intron	25.0%
	AAATTCTTGAGCTTGAAATC+CGG	+	chr3.1:13556228-13556247	MS.gene039914:intron	30.0%
	AACATTCTACATTTCTGATC+CGG	+	chr3.1:13557294-13557313	MS.gene039914:CDS	30.0%
	AATGACAGAACAGATGAATA+CGG	+	chr3.1:13556836-13556855	MS.gene039914:CDS	30.0%
	ACTATCCAATCAATATTGGA+CGG	-	chr3.1:13556255-13556274	None:intergenic	30.0%
	CAATATTCTTTACTGTCACA+TGG	+	chr3.1:13557033-13557052	MS.gene039914:CDS	30.0%
	CTCCTCTTAACAAGTATAAT+AGG	+	chr3.1:13557269-13557288	MS.gene039914:CDS	30.0%
	CTTTCATGAATTGTTCAAGT+AGG	-	chr3.1:13556808-13556827	None:intergenic	30.0%
	TATTGAAGCTGGTAAATTTG+TGG	+	chr3.1:13556600-13556619	MS.gene039914:intron	30.0%
	TTGAATTTGCCTATCTTGTA+AGG	-	chr3.1:13555673-13555692	None:intergenic	30.0%
!	CTACATTCTTTTGTCAGATT+TGG	+	chr3.1:13556027-13556046	MS.gene039914:CDS	30.0%
!	GATTGAAGCACATTTCATTT+TGG	-	chr3.1:13556642-13556661	None:intergenic	30.0%
!	GTTGGAAGATTTTCAAATTC+AGG	+	chr3.1:13556053-13556072	MS.gene039914:CDS	30.0%
!	TCCCTATTATACTTGTTAAG+AGG	-	chr3.1:13557274-13557293	None:intergenic	30.0%
!!	TCAGAAGCTGATTTTATTCT+TGG	-	chr3.1:13557064-13557083	None:intergenic	30.0%
	AAATCGACAACGATTCTCAA+GGG	-	chr3.1:13556867-13556886	None:intergenic	35.0%
	AAATGCATTGGGACTTCATA+TGG	+	chr3.1:13556991-13557010	MS.gene039914:CDS	35.0%
	ACTGCTTCAACAATTTCCAA+AGG	-	chr3.1:13556890-13556909	None:intergenic	35.0%
	AGACTCTAATCCAAATGCAT+TGG	+	chr3.1:13556979-13556998	MS.gene039914:CDS	35.0%
	AGCTTCAATAGCATTTCTTG+CGG	-	chr3.1:13556590-13556609	None:intergenic	35.0%
	ATATGAAGTCCCAATGCATT+TGG	-	chr3.1:13556992-13557011	None:intergenic	35.0%
	ATCTTGTAAGGTGTAAGAAG+AGG	-	chr3.1:13555661-13555680	None:intergenic	35.0%
	ATTGTTGGATTTAGATGGTG+TGG	+	chr3.1:13556132-13556151	MS.gene039914:intron	35.0%
	CAATGCTATAGCTGAAAACA+GGG	+	chr3.1:13557177-13557196	MS.gene039914:CDS	35.0%
	CTCAATTTGATGCAAATTGC+AGG	+	chr3.1:13556746-13556765	MS.gene039914:intron	35.0%
	CTCACTAGAATAAGATCCTA+TGG	+	chr3.1:13555819-13555838	MS.gene039914:CDS	35.0%
	CTGAAGTCATTGACAATATC+AGG	-	chr3.1:13556562-13556581	None:intergenic	35.0%
	CTTCTTACACCTTACAAGAT+AGG	+	chr3.1:13555661-13555680	MS.gene039914:CDS	35.0%
	CTTTCTGCATATTCAGCAAA+TGG	-	chr3.1:13556956-13556975	None:intergenic	35.0%
	GAAGCAGTTGTAAATGAGAT+AGG	+	chr3.1:13556902-13556921	MS.gene039914:CDS	35.0%
	GACTCTAATCCAAATGCATT+GGG	+	chr3.1:13556980-13556999	MS.gene039914:CDS	35.0%
	GCAAATTCAATCTCTCTCAT+AGG	+	chr3.1:13555683-13555702	MS.gene039914:CDS	35.0%
	GGAGGTTAATTAGCAAAACA+AGG	-	chr3.1:13555774-13555793	None:intergenic	35.0%
	TAAGGTGTAAGAAGAGGAAT+GGG	-	chr3.1:13555655-13555674	None:intergenic	35.0%
	TAGGATCTTATTCTAGTGAG+TGG	-	chr3.1:13555819-13555838	None:intergenic	35.0%
	TATAAGAAGACCACCTTTAG+AGG	-	chr3.1:13555889-13555908	None:intergenic	35.0%
	TATTCTTTACTGTCACATGG+TGG	+	chr3.1:13557036-13557055	MS.gene039914:CDS	35.0%
	TCAATGCTATAGCTGAAAAC+AGG	+	chr3.1:13557176-13557195	MS.gene039914:CDS	35.0%
	TTGTCCTCTATTACTCTCAA+AGG	+	chr3.1:13555862-13555881	MS.gene039914:CDS	35.0%
	TTTGCTGAATATGCAGAAAG+CGG	+	chr3.1:13556956-13556975	MS.gene039914:CDS	35.0%
!	AAAACAACTCTGAAAATGGG+AGG	-	chr3.1:13555792-13555811	None:intergenic	35.0%
!	GCCAAAACAACTCTGAAAAT+GGG	-	chr3.1:13555795-13555814	None:intergenic	35.0%
!	GTGTCCATTTTATTCTCAAC+AGG	+	chr3.1:13556430-13556449	MS.gene039914:intron	35.0%
!	TAGTTGGAGGTTGTTATTGT+TGG	+	chr3.1:13556117-13556136	MS.gene039914:intron	35.0%
!	TCCCATTTTCAGAGTTGTTT+TGG	+	chr3.1:13555791-13555810	MS.gene039914:intron	35.0%
!	TGCCAAAACAACTCTGAAAA+TGG	-	chr3.1:13555796-13555815	None:intergenic	35.0%
!	TTTTGTCAGATTTGGCATGT+TGG	+	chr3.1:13556035-13556054	MS.gene039914:CDS	35.0%
!!	ATGCAAATTGCAGGTTTTGA+TGG	+	chr3.1:13556755-13556774	MS.gene039914:intron	35.0%
	AAAAATTCTCGCTACCGAGA+AGG	+	chr3.1:13556518-13556537	MS.gene039914:CDS	40.0%
	AGGGCAGATCTTGTAGTTTA+TGG	+	chr3.1:13557196-13557215	MS.gene039914:CDS	40.0%
	CCAATGAGAAAGGCTTTCAA+TGG	+	chr3.1:13557112-13557131	MS.gene039914:CDS	40.0%
	CCATTGAAAGCCTTTCTCAT+TGG	-	chr3.1:13557115-13557134	None:intergenic	40.0%
	GAAATCGACAACGATTCTCA+AGG	-	chr3.1:13556868-13556887	None:intergenic	40.0%
	GACTTGTCGGTAGAAGATAT+CGG	-	chr3.1:13556478-13556497	None:intergenic	40.0%
	GAGTAATAGAGGACAACATG+TGG	-	chr3.1:13555858-13555877	None:intergenic	40.0%
	GCAAGAAATGCTATTGAAGC+TGG	+	chr3.1:13556589-13556608	MS.gene039914:CDS	40.0%
	GCATTAAGTGCAAACCTCTT+TGG	-	chr3.1:13557250-13557269	None:intergenic	40.0%
	GCTCTTTAGTCCATATACCT+GGG	-	chr3.1:13555959-13555978	None:intergenic	40.0%
	GTAAGGTGTAAGAAGAGGAA+TGG	-	chr3.1:13555656-13555675	None:intergenic	40.0%
	GTAGATGCTGTTCATGCTAA+AGG	+	chr3.1:13556002-13556021	MS.gene039914:CDS	40.0%
	TACATTTCTGATCCGGTTGT+AGG	+	chr3.1:13557301-13557320	MS.gene039914:CDS	40.0%
	TACTCTCAAAGGTCCTCTAA+AGG	+	chr3.1:13555873-13555892	MS.gene039914:CDS	40.0%
	TAGTCCGTATAACCTACAAC+CGG	-	chr3.1:13557316-13557335	None:intergenic	40.0%
	TGATCCGGTTGTAGGTTATA+CGG	+	chr3.1:13557309-13557328	MS.gene039914:CDS	40.0%
	TGCTCTTTAGTCCATATACC+TGG	-	chr3.1:13555960-13555979	None:intergenic	40.0%
!	AGGACCTTTGAGAGTAATAG+AGG	-	chr3.1:13555869-13555888	None:intergenic	40.0%
!	ATGGACTAAAGAGCAAGTTG+AGG	+	chr3.1:13555965-13555984	MS.gene039914:CDS	40.0%
!	ATTGCTTGTGAGTGACTTGT+CGG	-	chr3.1:13556491-13556510	None:intergenic	40.0%
!!	GAATCGTTGTCGATTTCCTT+TGG	+	chr3.1:13556871-13556890	MS.gene039914:CDS	40.0%
!!	TTTGATGGTGTCGAAATCCA+TGG	+	chr3.1:13556770-13556789	MS.gene039914:CDS	40.0%
	AAGCCTTTCTCATTGGCACA+AGG	-	chr3.1:13557108-13557127	None:intergenic	45.0%
	AATGGCACTTTCATGGTTGC+GGG	+	chr3.1:13557130-13557149	MS.gene039914:CDS	45.0%
	CAATGGCACTTTCATGGTTG+CGG	+	chr3.1:13557129-13557148	MS.gene039914:CDS	45.0%
	CCAATCAATATTGGACGGTC+CGG	-	chr3.1:13556250-13556269	None:intergenic	45.0%
	CGAATCCAGATTTGCCAAAG+AGG	+	chr3.1:13557233-13557252	MS.gene039914:CDS	45.0%
	CTAGACAACCGATCTTGATG+TGG	-	chr3.1:13556177-13556196	None:intergenic	45.0%
	CTTCTTATAGCCGAAGCTAC+TGG	+	chr3.1:13555900-13555919	MS.gene039914:CDS	45.0%
	GACAGAACAGATGAATACGG+TGG	+	chr3.1:13556839-13556858	MS.gene039914:CDS	45.0%
	GAGATAGGAGCCGATAAAGT+TGG	+	chr3.1:13556917-13556936	MS.gene039914:CDS	45.0%
	GCAAACCTCTTTGGCAAATC+TGG	-	chr3.1:13557241-13557260	None:intergenic	45.0%
	GCAGTCAACCACATCAAGAT+CGG	+	chr3.1:13556166-13556185	MS.gene039914:intron	45.0%
	GCATGAACAGCATCTACAAC+AGG	-	chr3.1:13555999-13556018	None:intergenic	45.0%
	GGCTTTCAATGGCACTTTCA+TGG	+	chr3.1:13557123-13557142	MS.gene039914:CDS	45.0%
	TAGAGGACAACATGTGGTTG+AGG	-	chr3.1:13555852-13555871	None:intergenic	45.0%
	TCATTGGCACAAGGCTGTAA+GGG	-	chr3.1:13557099-13557118	None:intergenic	45.0%
	TGGTTGAGGAACATTGCCAT+AGG	-	chr3.1:13555838-13555857	None:intergenic	45.0%
!	GATATCGGTGCTTGTCCATT+CGG	-	chr3.1:13556463-13556482	None:intergenic	45.0%
!	TCAACAGGTTTTCAGCCGAA+TGG	+	chr3.1:13556445-13556464	MS.gene039914:intron	45.0%
!	TCTCAAAGGTCCTCTAAAGG+TGG	+	chr3.1:13555876-13555895	MS.gene039914:CDS	45.0%
	ATCCAGACAGCCCAGGTATA+TGG	+	chr3.1:13555946-13555965	MS.gene039914:CDS	50.0%
	CCGGACCGTCCAATATTGAT+TGG	+	chr3.1:13556247-13556266	MS.gene039914:intron	50.0%
	CTCATTGGCACAAGGCTGTA+AGG	-	chr3.1:13557100-13557119	None:intergenic	50.0%
	GAGGCTATGACAGACAAGAC+GGG	+	chr3.1:13557152-13557171	MS.gene039914:CDS	50.0%
	GGAGGCTATGACAGACAAGA+CGG	+	chr3.1:13557151-13557170	MS.gene039914:CDS	50.0%
	GTCGAAATCCATGGAGCTCA+TGG	+	chr3.1:13556779-13556798	MS.gene039914:CDS	50.0%
	GTCGGATACACCAGTAGCTT+CGG	-	chr3.1:13555913-13555932	None:intergenic	50.0%
	GTGTATCCGACACAGCTCAA+GGG	+	chr3.1:13555922-13555941	MS.gene039914:CDS	50.0%
	TCATCTGTCCCAAGCCTTCT+CGG	-	chr3.1:13556535-13556554	None:intergenic	50.0%
	TGGATACCCTTGAGCTGTGT+CGG	-	chr3.1:13555931-13555950	None:intergenic	50.0%
!	CAGCCTTGTGCCAATGAGAA+AGG	+	chr3.1:13557102-13557121	MS.gene039914:CDS	50.0%
!	CTAAAGAGCAAGTTGAGGCG+TGG	+	chr3.1:13555970-13555989	MS.gene039914:CDS	50.0%
	GGTGTATCCGACACAGCTCA+AGG	+	chr3.1:13555921-13555940	MS.gene039914:CDS	55.0%
	GTAGGTAGCCATGAGCTCCA+TGG	-	chr3.1:13556790-13556809	None:intergenic	55.0%
	GTCCATATACCTGGGCTGTC+TGG	-	chr3.1:13555951-13555970	None:intergenic	55.0%
	TCTCGCTACCGAGAAGGCTT+GGG	+	chr3.1:13556524-13556543	MS.gene039914:CDS	55.0%
	TTCTCGCTACCGAGAAGGCT+TGG	+	chr3.1:13556523-13556542	MS.gene039914:CDS	55.0%
	GGCACTTTCATGGTTGCGGG+AGG	+	chr3.1:13557133-13557152	MS.gene039914:CDS	60.0%
!!	CAAGGGTATCCAGACAGCCC+AGG	+	chr3.1:13555939-13555958	MS.gene039914:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	13555628	13557351	13555628	ID=MS.gene039914
chr3.1	mRNA	13555628	13557351	13555628	ID=MS.gene039914.t1;Parent=MS.gene039914
chr3.1	exon	13555628	13555704	13555628	ID=MS.gene039914.t1.exon1;Parent=MS.gene039914.t1
chr3.1	CDS	13555628	13555704	13555628	ID=cds.MS.gene039914.t1;Parent=MS.gene039914.t1
chr3.1	exon	13555803	13556074	13555803	ID=MS.gene039914.t1.exon2;Parent=MS.gene039914.t1
chr3.1	CDS	13555803	13556074	13555803	ID=cds.MS.gene039914.t1;Parent=MS.gene039914.t1
chr3.1	exon	13556452	13556610	13556452	ID=MS.gene039914.t1.exon3;Parent=MS.gene039914.t1
chr3.1	CDS	13556452	13556610	13556452	ID=cds.MS.gene039914.t1;Parent=MS.gene039914.t1
chr3.1	exon	13556768	13557351	13556768	ID=MS.gene039914.t1.exon4;Parent=MS.gene039914.t1
chr3.1	CDS	13556768	13557351	13556768	ID=cds.MS.gene039914.t1;Parent=MS.gene039914.t1

Gene Sequence

>MS.gene039914

ATGGAAGCTGCTAAAACTGCTGATCCCATTCCTCTTCTTACACCTTACAAGATAGGCAAATTCAATCTCTCTCATAGGTACCTATTATACTTTCAATTTCAATGTTATGTTTATTTCAATTTCAATTTCAATATCAATGCTTACCTTGTTTTGCTAATTAACCTCCCATTTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCCTATGGCAATGTTCCTCAACCACATGTTGTCCTCTATTACTCTCAAAGGTCCTCTAAAGGTGGTCTTCTTATAGCCGAAGCTACTGGTGTATCCGACACAGCTCAAGGGTATCCAGACAGCCCAGGTATATGGACTAAAGAGCAAGTTGAGGCGTGGAAACCTGTTGTAGATGCTGTTCATGCTAAAGGTGCTACATTCTTTTGTCAGATTTGGCATGTTGGAAGATTTTCAAATTCAGGTATGTATATATTTATTTCCTCATATAATTTGAAGATTATTTTAGTTGGAGGTTGTTATTGTTGGATTTAGATGGTGTGGTGTGCGTTCATGCAGTCAACCACATCAAGATCGGTTGTCTAGATTTCAATGCAAATTTTGACTTTTTAAATCTAAATTCTTGAGCTTGAAATCCGGACCGTCCAATATTGATTGGATAGTTTTGATGTGTCTGACTAAATGCAGTCACAACTCTGTGATAATATACAACCCAAATCCGTTATTTTTTAGTATTACTACTACTAAGGGGTGACAACTTTCTGATTTTTGAAGTAATATATATGCACACATATATACAAATAAAATACTTACTTTGTGTGTCCATTTTATTCTCAACAGGTTTTCAGCCGAATGGACAAGCACCGATATCTTCTACCGACAAGTCACTCACAAGCAATGATTTTGAAAAATTCTCGCTACCGAGAAGGCTTGGGACAGATGAAATTCCTGATATTGTCAATGACTTCAGACTCGCCGCAAGAAATGCTATTGAAGCTGGTAAATTTGTGGATCTTTACAAATTTATCCAAAATGAAATGTGCTTCAATCATAGTACAATACTGATATTTTTCAGAAACAGGACTATTTGTTGATTTAAAGGGCACACAGACATTTTGAAAATCAACTAACATGCTCAATTTGATGCAAATTGCAGGTTTTGATGGTGTCGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATACGGTGGATCCCTTGAGAATCGTTGTCGATTTCCTTTGGAAATTGTTGAAGCAGTTGTAAATGAGATAGGAGCCGATAAAGTTGGAATTAGACTATCACCATTTGCTGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCCCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGCTTCTGAAACGATTGAAAGCCCTTACAGCCTTGTGCCAATGAGAAAGGCTTTCAATGGCACTTTCATGGTTGCGGGAGGCTATGACAGACAAGACGGGATCAATGCTATAGCTGAAAACAGGGCAGATCTTGTAGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGGTTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAAACATTCTACATTTCTGATCCGGTTGTAGGTTATACGGACTATCCATTTCTTGAATGA

Protein sequence

>MS.gene039914.t1

MEAAKTADPIPLLTPYKIGKFNLSHRVVLAPLTRIRSYGNVPQPHVVLYYSQRSSKGGLLIAEATGVSDTAQGYPDSPGIWTKEQVEAWKPVVDAVHAKGATFFCQIWHVGRFSNSGFQPNGQAPISSTDKSLTSNDFEKFSLPRRLGTDEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFPLEIVEAVVNEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSASETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIAENRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE