AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024836

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024836.t1 MTR_5g006710 94.766 363 19 0 5 367 1 363 0.0 723
MS.gene024836.t1 MTR_5g006670 89.045 356 39 0 12 367 4 359 0.0 667
MS.gene024836.t1 MTR_5g006800 84.011 369 53 1 5 367 1 369 0.0 640
MS.gene024836.t1 MTR_5g006780 84.097 371 51 2 5 367 1 371 0.0 637
MS.gene024836.t1 MTR_5g006740 80.110 362 66 1 12 367 4 365 0.0 612
MS.gene024836.t1 MTR_5g006750 79.784 371 67 2 5 367 1 371 0.0 611
MS.gene024836.t1 MTR_5g008040 76.757 370 80 1 3 366 1 370 0.0 600
MS.gene024836.t1 MTR_5g006740 76.519 362 62 2 12 367 4 348 0.0 568
MS.gene024836.t1 MTR_3g115600 71.348 356 100 1 14 367 8 363 0.0 536
MS.gene024836.t1 MTR_5g006720 70.933 375 65 3 10 367 5 352 0.0 531
MS.gene024836.t1 MTR_4g125470 52.646 378 160 3 8 366 11 388 1.29e-143 413
MS.gene024836.t1 MTR_5g006730 94.872 117 6 0 5 121 1 117 1.83e-78 237
MS.gene024836.t1 MTR_3g096570 77.465 71 16 0 173 243 8 78 1.09e-30 118
MS.gene024836.t1 MTR_3g096562 67.901 81 26 0 163 243 162 242 1.11e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024836.t1 AT1G76690 73.046 371 94 1 3 367 1 371 0.0 568
MS.gene024836.t1 AT1G76680 72.900 369 94 2 5 367 1 369 0.0 564
MS.gene024836.t1 AT1G76680 68.274 394 94 3 5 367 1 394 0.0 550
MS.gene024836.t1 AT1G09400 70.370 324 96 0 22 345 1 324 1.25e-177 496
MS.gene024836.t1 AT1G09400 72.348 264 73 0 82 345 2 265 5.47e-147 416
MS.gene024836.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene024836.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene024836.t1 AT2G06050 52.406 374 155 3 16 366 12 385 2.02e-142 409
MS.gene024836.t1 AT1G17990 71.542 253 69 2 14 264 7 258 2.16e-135 387
MS.gene024836.t1 AT1G18020 71.542 253 69 2 14 264 7 258 2.16e-135 387
MS.gene024836.t1 AT1G17990 68.379 253 69 3 14 264 7 250 1.08e-126 365

Find 84 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.196300 5.1:-1405211 None:intergenic
AGGGCAGACCTTGTTGTTTA+TGG 0.231299 5.1:+1405169 MS.gene024836:CDS
TCAATGCTATAGCAGATAAT+AGG 0.232603 5.1:+1405149 MS.gene024836:CDS
TATGAGAAAACCACCTTTAG+AGG 0.233951 5.1:-1403533 None:intergenic
TATTTAAATGGGTATCAAAA+TGG 0.268737 5.1:+1403274 None:intergenic
TCATCATTTCAGAGTTGTTT+TGG 0.287756 5.1:+1403438 MS.gene024836:intron
CTCCTCTCAATAAATATAAC+AGG 0.291526 5.1:+1405242 MS.gene024836:CDS
TATGATCTCATTCTTGTTAG+TGG 0.293944 5.1:-1403463 None:intergenic
GCTGGAAGGGTTTCAAATTC+AGG 0.316380 5.1:+1403700 MS.gene024836:CDS
ATCCAAACACACCAGGTATA+TGG 0.318288 5.1:+1403593 MS.gene024836:CDS
AATGGTACTTTCATGGTTGC+AGG 0.322861 5.1:+1405103 MS.gene024836:CDS
GGCTTTCAATGGTACTTTCA+TGG 0.340526 5.1:+1405096 MS.gene024836:CDS
GTCCATATACCTGGTGTGTT+TGG 0.341076 5.1:-1403595 None:intergenic
GCATTAAGAGCAAATCTCTT+TGG 0.352480 5.1:-1405220 None:intergenic
CTCATTGGCACCAGACTGTA+AGG 0.356523 5.1:-1405070 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.1:+1404964 MS.gene024836:CDS
TGATCCGGTGGTAGGTTATA+CGG 0.367077 5.1:+1405282 MS.gene024836:CDS
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.1:-1404962 None:intergenic
TTATCTTTCATGAATTGTTC+AGG 0.388133 5.1:-1404782 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.388704 5.1:-1403335 None:intergenic
TCATGAACCGCATCTACAAT+AGG 0.389733 5.1:-1403643 None:intergenic
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.1:+1404890 MS.gene024836:CDS
GAATCGTTGTCGATTTCCTT+TGG 0.398546 5.1:+1404844 MS.gene024836:CDS
AATGACAGAACAGATGAATA+TGG 0.401093 5.1:+1404809 MS.gene024836:CDS
GATATTGGTGCTTGTCCATT+CGG 0.411160 5.1:-1404433 None:intergenic
CTGAAATCATTGACAATATG+AGG 0.422538 5.1:-1404532 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.422831 5.1:-1405085 None:intergenic
TTCTGTCAAATTTGGCATGC+TGG 0.423347 5.1:+1403682 MS.gene024836:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.1:-1404926 None:intergenic
CAATGCTATAGCAGATAATA+GGG 0.441084 5.1:+1405150 MS.gene024836:CDS
GAAGCAGTTGCGAATGAGAT+AGG 0.444031 5.1:+1404875 MS.gene024836:CDS
GTCAAATTTGGCATGCTGGA+AGG 0.444257 5.1:+1403686 MS.gene024836:CDS
TAAGGTGTAAGTAAAGGAAT+AGG 0.446720 5.1:-1403317 None:intergenic
TTTACTTACACCTTACAAGA+TGG 0.452565 5.1:+1403325 MS.gene024836:CDS
GACTCTAATCCAAATGCATT+GGG 0.453689 5.1:+1404953 MS.gene024836:CDS
GACATTCTACATTTCTGATC+CGG 0.456348 5.1:+1405267 MS.gene024836:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.460762 5.1:+1403348 MS.gene024836:CDS
TTTCTCATAGCTGAAGCTAC+TGG 0.465915 5.1:+1403547 MS.gene024836:CDS
TCAAATTTGGCATGCTGGAA+GGG 0.472329 5.1:+1403687 MS.gene024836:CDS
TCACGAAACCGAGACGACTA+AGG 0.488520 5.1:+1404497 MS.gene024836:CDS
TCATCTGTCCTTAGTCGTCT+CGG 0.489558 5.1:-1404505 None:intergenic
CAGTCTGGTGCCAATGAGAA+AGG 0.498444 5.1:+1405075 MS.gene024836:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.500651 5.1:+1404743 MS.gene024836:CDS
GTGGAACCAAGAATAAAATC+AGG 0.503178 5.1:+1405028 MS.gene024836:CDS
GACTTGTCTGTAGAAGATAT+TGG 0.505257 5.1:-1404448 None:intergenic
GAATAATACTTGATAGCAAT+GGG 0.505456 5.1:-1403502 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.1:+1404952 MS.gene024836:CDS
GATTGAAAGCCCTTACAGTC+TGG 0.513661 5.1:+1405060 MS.gene024836:CDS
TACTTGATAGCAATGGGTTG+AGG 0.515275 5.1:-1403496 None:intergenic
GGAGGCTATGACAGACAAGA+TGG 0.516327 5.1:+1405124 MS.gene024836:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.1:+1404562 MS.gene024836:CDS
TTACTTACACCTTACAAGAT+GGG 0.519268 5.1:+1403326 MS.gene024836:CDS
AGAATAATACTTGATAGCAA+TGG 0.520679 5.1:-1403503 None:intergenic
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5.1:+1404752 MS.gene024836:CDS
TCCCTGTTATATTTATTGAG+AGG 0.534017 5.1:-1405244 None:intergenic
TATTCTCAGAGAACCTCTAA+AGG 0.545106 5.1:+1403520 MS.gene024836:CDS
ATCTTGTAAGGTGTAAGTAA+AGG 0.563877 5.1:-1403323 None:intergenic
CCAATGAGAAAGGCTTTCAA+TGG 0.571441 5.1:+1405085 MS.gene024836:CDS
CAATATTCTTTACTGTCACA+TGG 0.576936 5.1:+1405006 MS.gene024836:CDS
TACATTTCTGATCCGGTGGT+AGG 0.590489 5.1:+1405274 MS.gene024836:CDS
TAAATGGGTATCAAAATGGA+AGG 0.592945 5.1:+1403278 None:intergenic
TGCTCTTTAGTCCATATACC+TGG 0.594651 5.1:-1403604 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.1:-1404760 None:intergenic
TCTCAGAGAACCTCTAAAGG+TGG 0.598789 5.1:+1403523 MS.gene024836:CDS
CTTTCATGAATTGTTCAGGT+AGG 0.601902 5.1:-1404778 None:intergenic
TCATTGGCACCAGACTGTAA+GGG 0.602205 5.1:-1405069 None:intergenic
GGTGTCTCTGACACTGCTCA+AGG 0.607719 5.1:+1403568 MS.gene024836:CDS
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.1:-1404860 None:intergenic
ATTCTACATTTCTGATCCGG+TGG 0.614919 5.1:+1405270 MS.gene024836:CDS
CAAGGCTATCCAAACACACC+AGG 0.616594 5.1:+1403586 MS.gene024836:CDS
GAGGCTATGACAGACAAGAT+GGG 0.618192 5.1:+1405125 MS.gene024836:CDS
GGTACTTTCATGGTTGCAGG+AGG 0.622008 5.1:+1405106 MS.gene024836:CDS
CTAAAGAGCATGTTGAGGCG+TGG 0.628560 5.1:+1403617 MS.gene024836:CDS
CTAACAGTTTATCAACCGAA+TGG 0.632307 5.1:+1404418 MS.gene024836:intron
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.1:+1404929 MS.gene024836:CDS
GTGGAAACCTATTGTAGATG+CGG 0.642769 5.1:+1403636 MS.gene024836:CDS
GTAGATGCGGTTCATGACAA+AGG 0.644665 5.1:+1403649 MS.gene024836:CDS
TCCTCTCAATAAATATAACA+GGG 0.647614 5.1:+1405243 MS.gene024836:CDS
GACAGAACAGATGAATATGG+CGG 0.673922 5.1:+1404812 MS.gene024836:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.1:+1405009 MS.gene024836:CDS
ATGGACTAAAGAGCATGTTG+AGG 0.685195 5.1:+1403612 MS.gene024836:CDS
TAGTCCGTATAACCTACCAC+CGG 0.695454 5.1:-1405286 None:intergenic
ACAAACGACCATAAACAACA+AGG 0.713799 5.1:-1405177 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.716742 5.1:+1403652 MS.gene024836:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAATAAAATGATTT+GGG + chr5.1:1404314-1404333 MS.gene024836:intron 10.0%
!! TACAATAAAATAAAATGATT+TGG + chr5.1:1404313-1404332 MS.gene024836:intron 10.0%
!!! CTAAATTTTATTTTTATCAA+AGG - chr5.1:1403975-1403994 None:intergenic 10.0%
!!! ATTATTGATTATTACTATCT+CGG + chr5.1:1404349-1404368 MS.gene024836:intron 15.0%
!!! GTATATTTTTCTATCAAATT+TGG + chr5.1:1403886-1403905 MS.gene024836:intron 15.0%
!! AAATAGAATAGAAAGTGAAA+TGG - chr5.1:1403387-1403406 None:intergenic 20.0%
!! TTTAGAAAAAATAACACACA+GGG - chr5.1:1404118-1404137 None:intergenic 20.0%
!!! GTATATTTTTCTGTCAAATT+TGG + chr5.1:1403674-1403693 MS.gene024836:CDS 20.0%
!!! TAAAATAAAATGATTTGGGT+TGG + chr5.1:1404318-1404337 MS.gene024836:intron 20.0%
! AGACATCAATCAAATTACTT+GGG + chr5.1:1404278-1404297 MS.gene024836:intron 25.0%
! GATAAACTGTTAGATTAACA+AGG - chr5.1:1404411-1404430 None:intergenic 25.0%
! TAGACATCAATCAAATTACT+TGG + chr5.1:1404277-1404296 MS.gene024836:intron 25.0%
! TCCTCTCAATAAATATAACA+GGG + chr5.1:1405243-1405262 MS.gene024836:CDS 25.0%
! TTATCTTTCATGAATTGTTC+AGG - chr5.1:1404785-1404804 None:intergenic 25.0%
!! AGAATAATACTTGATAGCAA+TGG - chr5.1:1403506-1403525 None:intergenic 25.0%
!! CTTTAGAAAAAATAACACAC+AGG - chr5.1:1404119-1404138 None:intergenic 25.0%
!! GAATAATACTTGATAGCAAT+GGG - chr5.1:1403505-1403524 None:intergenic 25.0%
AACTGTTAGATTAACAAGGA+AGG - chr5.1:1404407-1404426 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.1:1404809-1404828 MS.gene024836:CDS 30.0%
ATCTTGTAAGGTGTAAGTAA+AGG - chr5.1:1403326-1403345 None:intergenic 30.0%
CAAATAGAATACTCACTGTA+TGG + chr5.1:1404374-1404393 MS.gene024836:intron 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.1:1405006-1405025 MS.gene024836:CDS 30.0%
CAATGCTATAGCAGATAATA+GGG + chr5.1:1405150-1405169 MS.gene024836:CDS 30.0%
CGCTAATAACTTCAATAATG+TGG - chr5.1:1404229-1404248 None:intergenic 30.0%
CTCAAATATAACATGCTCTA+AGG + chr5.1:1403861-1403880 MS.gene024836:intron 30.0%
CTCCTCTCAATAAATATAAC+AGG + chr5.1:1405242-1405261 MS.gene024836:CDS 30.0%
CTGAAATCATTGACAATATG+AGG - chr5.1:1404535-1404554 None:intergenic 30.0%
GTTATATTTGAGCTAGGTAA+TGG - chr5.1:1403853-1403872 None:intergenic 30.0%
TAAGGTGTAAGTAAAGGAAT+AGG - chr5.1:1403320-1403339 None:intergenic 30.0%
TATGATCTCATTCTTGTTAG+TGG - chr5.1:1403466-1403485 None:intergenic 30.0%
TCAATGCTATAGCAGATAAT+AGG + chr5.1:1405149-1405168 MS.gene024836:CDS 30.0%
TCCCTGTTATATTTATTGAG+AGG - chr5.1:1405247-1405266 None:intergenic 30.0%
TTACTTACACCTTACAAGAT+GGG + chr5.1:1403326-1403345 MS.gene024836:CDS 30.0%
TTCAATGTGATGTAAATTGC+AGG + chr5.1:1404719-1404738 MS.gene024836:intron 30.0%
TTCTATCAAATTTGGCATGT+TGG + chr5.1:1403894-1403913 MS.gene024836:intron 30.0%
TTTACTTACACCTTACAAGA+TGG + chr5.1:1403325-1403344 MS.gene024836:CDS 30.0%
TTTGTTGCAGAAAGTAGTAA+TGG + chr5.1:1404174-1404193 MS.gene024836:intron 30.0%
! GGTAATGGTAAAATTATGCT+AGG - chr5.1:1403838-1403857 None:intergenic 30.0%
! TAAATAAAAGTGTGACCAGA+AGG + chr5.1:1403758-1403777 MS.gene024836:intron 30.0%
! TCATCACCTGATTTTATTCT+TGG - chr5.1:1405037-1405056 None:intergenic 30.0%
! TCATCATTTCAGAGTTGTTT+TGG + chr5.1:1403438-1403457 MS.gene024836:intron 30.0%
! TTGATGATCTTAACCAATTG+AGG - chr5.1:1403802-1403821 None:intergenic 30.0%
!! AAATATAACATGCTCTAAGG+CGG + chr5.1:1403864-1403883 MS.gene024836:intron 30.0%
!! AATAAAATGATTTGGGTTGG+AGG + chr5.1:1404321-1404340 MS.gene024836:intron 30.0%
!! ATGTAAATTGCAGGTTTTGA+TGG + chr5.1:1404728-1404747 MS.gene024836:intron 30.0%
!! TGTAAATTGCAGGTTTTGAT+GGG + chr5.1:1404729-1404748 MS.gene024836:intron 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.1:1404964-1404983 MS.gene024836:CDS 35.0%
ACAAACGACCATAAACAACA+AGG - chr5.1:1405180-1405199 None:intergenic 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.1:1404952-1404971 MS.gene024836:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.1:1404965-1404984 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.1:1404574-1404593 MS.gene024836:intron 35.0%
CTAACAGTTTATCAACCGAA+TGG + chr5.1:1404418-1404437 MS.gene024836:intron 35.0%
CTTTCATGAATTGTTCAGGT+AGG - chr5.1:1404781-1404800 None:intergenic 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.1:1404929-1404948 None:intergenic 35.0%
GACATTCTACATTTCTGATC+CGG + chr5.1:1405267-1405286 MS.gene024836:CDS 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.1:1404953-1404972 MS.gene024836:CDS 35.0%
GACTTGTCTGTAGAAGATAT+TGG - chr5.1:1404451-1404470 None:intergenic 35.0%
GAGCATGTTATATTTGAGCT+AGG - chr5.1:1403859-1403878 None:intergenic 35.0%
GCATTAAGAGCAAATCTCTT+TGG - chr5.1:1405223-1405242 None:intergenic 35.0%
GTGGAACCAAGAATAAAATC+AGG + chr5.1:1405028-1405047 MS.gene024836:CDS 35.0%
GTTGGAAGAGTTTCAAATTC+AGG + chr5.1:1403912-1403931 MS.gene024836:intron 35.0%
TATGAGAAAACCACCTTTAG+AGG - chr5.1:1403536-1403555 None:intergenic 35.0%
TATTCTCAGAGAACCTCTAA+AGG + chr5.1:1403520-1403539 MS.gene024836:CDS 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.1:1405009-1405028 MS.gene024836:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.1:1403338-1403357 None:intergenic 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.1:1404929-1404948 MS.gene024836:CDS 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.1:1403348-1403367 MS.gene024836:CDS 35.0%
!! GGTAAGTTTACTGGTCTTTA+CGG + chr5.1:1404583-1404602 MS.gene024836:intron 35.0%
!! GTAAATTGCAGGTTTTGATG+GGG + chr5.1:1404730-1404749 MS.gene024836:intron 35.0%
AATGGTACTTTCATGGTTGC+AGG + chr5.1:1405103-1405122 MS.gene024836:CDS 40.0%
ACACAAATGGTTAGACCTTC+TGG - chr5.1:1403776-1403795 None:intergenic 40.0%
ACACACTTCCAATTCACAAC+TGG + chr5.1:1404003-1404022 MS.gene024836:intron 40.0%
ACGTGACACAAGCTACAAAT+AGG + chr5.1:1404200-1404219 MS.gene024836:intron 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.1:1404863-1404882 None:intergenic 40.0%
AGCTGATGATCTGAACCAAT+CGG - chr5.1:1404062-1404081 None:intergenic 40.0%
ATCCAAACACACCAGGTATA+TGG + chr5.1:1403593-1403612 MS.gene024836:CDS 40.0%
ATTCTACATTTCTGATCCGG+TGG + chr5.1:1405270-1405289 MS.gene024836:CDS 40.0%
CAATTCACAACTGGTGCAAA+CGG + chr5.1:1404012-1404031 MS.gene024836:intron 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.1:1405085-1405104 MS.gene024836:CDS 40.0%
CCAATTGAGGTTGACACAAA+TGG - chr5.1:1403789-1403808 None:intergenic 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.1:1405088-1405107 None:intergenic 40.0%
CCATTTGTGTCAACCTCAAT+TGG + chr5.1:1403786-1403805 MS.gene024836:intron 40.0%
GACAGAACAGATGAATATGG+CGG + chr5.1:1404812-1404831 MS.gene024836:CDS 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.1:1404890-1404909 MS.gene024836:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.1:1405214-1405233 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.1:1404562-1404581 MS.gene024836:CDS 40.0%
GGCTTTCAATGGTACTTTCA+TGG + chr5.1:1405096-1405115 MS.gene024836:CDS 40.0%
GTGGAAACCTATTGTAGATG+CGG + chr5.1:1403636-1403655 MS.gene024836:CDS 40.0%
TCAAATTTGGCATGCTGGAA+GGG + chr5.1:1403687-1403706 MS.gene024836:CDS 40.0%
TCATGAACCGCATCTACAAT+AGG - chr5.1:1403646-1403665 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.1:1403607-1403626 None:intergenic 40.0%
TTCTGTCAAATTTGGCATGC+TGG + chr5.1:1403682-1403701 MS.gene024836:CDS 40.0%
TTTCTCATAGCTGAAGCTAC+TGG + chr5.1:1403547-1403566 MS.gene024836:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.1:1404743-1404762 MS.gene024836:CDS 40.0%
! ATGGACTAAAGAGCATGTTG+AGG + chr5.1:1403612-1403631 MS.gene024836:CDS 40.0%
! GATATTGGTGCTTGTCCATT+CGG - chr5.1:1404436-1404455 None:intergenic 40.0%
!! GAATCGTTGTCGATTTCCTT+TGG + chr5.1:1404844-1404863 MS.gene024836:CDS 40.0%
!! TACTTGATAGCAATGGGTTG+AGG - chr5.1:1403499-1403518 None:intergenic 40.0%
CGTTTGCACCAGTTGTGAAT+TGG - chr5.1:1404014-1404033 None:intergenic 45.0%
GAAGCAGTTGCGAATGAGAT+AGG + chr5.1:1404875-1404894 MS.gene024836:CDS 45.0%
GAGGCTATGACAGACAAGAT+GGG + chr5.1:1405125-1405144 MS.gene024836:CDS 45.0%
GATTGAAAGCCCTTACAGTC+TGG + chr5.1:1405060-1405079 MS.gene024836:CDS 45.0%
GCTGGAAGGGTTTCAAATTC+AGG + chr5.1:1403700-1403719 MS.gene024836:CDS 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.1:1403649-1403668 MS.gene024836:CDS 45.0%
GTCAAATTTGGCATGCTGGA+AGG + chr5.1:1403686-1403705 MS.gene024836:CDS 45.0%
GTCCATATACCTGGTGTGTT+TGG - chr5.1:1403598-1403617 None:intergenic 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.1:1404752-1404771 MS.gene024836:CDS 45.0%
TACATTTCTGATCCGGTGGT+AGG + chr5.1:1405274-1405293 MS.gene024836:CDS 45.0%
TAGTCCGTATAACCTACCAC+CGG - chr5.1:1405289-1405308 None:intergenic 45.0%
TCATCTGTCCTTAGTCGTCT+CGG - chr5.1:1404508-1404527 None:intergenic 45.0%
TCATTGGCACCAGACTGTAA+GGG - chr5.1:1405072-1405091 None:intergenic 45.0%
TGATCCGGTGGTAGGTTATA+CGG + chr5.1:1405282-1405301 MS.gene024836:CDS 45.0%
TGATCTGAACCAATCGGTGT+AGG - chr5.1:1404056-1404075 None:intergenic 45.0%
! TCTCAGAGAACCTCTAAAGG+TGG + chr5.1:1403523-1403542 MS.gene024836:CDS 45.0%
!! AGGGCAGACCTTGTTGTTTA+TGG + chr5.1:1405169-1405188 MS.gene024836:CDS 45.0%
!! ATAAAAATAAAATTTAGATT+AGG + chr5.1:1403978-1403997 MS.gene024836:intron 5.0%
CAAGGCTATCCAAACACACC+AGG + chr5.1:1403586-1403605 MS.gene024836:CDS 50.0%
CTATCTGTGCCTACACCGAT+TGG + chr5.1:1404044-1404063 MS.gene024836:intron 50.0%
CTCATTGGCACCAGACTGTA+AGG - chr5.1:1405073-1405092 None:intergenic 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.1:1403652-1403671 MS.gene024836:CDS 50.0%
GGAGGCTATGACAGACAAGA+TGG + chr5.1:1405124-1405143 MS.gene024836:CDS 50.0%
GGTACTTTCATGGTTGCAGG+AGG + chr5.1:1405106-1405125 MS.gene024836:CDS 50.0%
TCACGAAACCGAGACGACTA+AGG + chr5.1:1404497-1404516 MS.gene024836:CDS 50.0%
! CAGTCTGGTGCCAATGAGAA+AGG + chr5.1:1405075-1405094 MS.gene024836:CDS 50.0%
! CTAAAGAGCATGTTGAGGCG+TGG + chr5.1:1403617-1403636 MS.gene024836:CDS 50.0%
GGTGTCTCTGACACTGCTCA+AGG + chr5.1:1403568-1403587 MS.gene024836:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.1:1404763-1404782 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1403281 1405324 1403281 ID=MS.gene024836
chr5.1 mRNA 1403281 1405324 1403281 ID=MS.gene024836.t1;Parent=MS.gene024836
chr5.1 exon 1403281 1403369 1403281 ID=MS.gene024836.t1.exon1;Parent=MS.gene024836.t1
chr5.1 CDS 1403281 1403369 1403281 ID=cds.MS.gene024836.t1;Parent=MS.gene024836.t1
chr5.1 exon 1403450 1403721 1403450 ID=MS.gene024836.t1.exon2;Parent=MS.gene024836.t1
chr5.1 CDS 1403450 1403721 1403450 ID=cds.MS.gene024836.t1;Parent=MS.gene024836.t1
chr5.1 exon 1404425 1404583 1404425 ID=MS.gene024836.t1.exon3;Parent=MS.gene024836.t1
chr5.1 CDS 1404425 1404583 1404425 ID=cds.MS.gene024836.t1;Parent=MS.gene024836.t1
chr5.1 exon 1404741 1405324 1404741 ID=MS.gene024836.t1.exon4;Parent=MS.gene024836.t1
chr5.1 CDS 1404741 1405324 1404741 ID=cds.MS.gene024836.t1;Parent=MS.gene024836.t1
Gene Sequence

>MS.gene024836

ATGGGTATCAAAATGGAAGGTACTAACATCACTGATCCTATTCCTTTACTTACACCTTACAAGATGGGCAAATTCAATCTAGCTCATAGGTGCATACTACATACCATTTCACTTTCTATTCTATTTTATTTCAATGTTTTTCTCTTGCTAAATAATTTCATCATTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCATACAACAATGTTCCTCAACCCATTGCTATCAAGTATTATTCTCAGAGAACCTCTAAAGGTGGTTTTCTCATAGCTGAAGCTACTGGTGTCTCTGACACTGCTCAAGGCTATCCAAACACACCAGGTATATGGACTAAAGAGCATGTTGAGGCGTGGAAACCTATTGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAAATTTGGCATGCTGGAAGGGTTTCAAATTCAGGTATGTATCTATTTCGTCATATCATTATTTATTATGTAAATAAAAGTGTGACCAGAAGGTCTAACCATTTGTGTCAACCTCAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTACCATTACCTAGCTCAAATATAACATGCTCTAAGGCGGTATATTTTTCTATCAAATTTGGCATGTTGGAAGAGTTTCAAATTCAGGTATTTATCTATTTGCTCAAATCATTAGTGTTTTTTTTCCTTTGATAAAAATAAAATTTAGATTAGGTGACACACTTCCAATTCACAACTGGTGCAAACGGAATGTTTAACTATCTGTGCCTACACCGATTGGTTCAGATCATCAGCTTTTATTTAACAGACTTATTATGAGTTTAACATGCCCTGTGTGTTATTTTTTCTAAAGTCATTTTTTTTGTCAAAAAACAAAATTTCAAGCAATTTGTTGCAGAAAGTAGTAATGGAAAACGTGACACAAGCTACAAATAGGAAACCACATTATTGAAGTTATTAGCGTTAACTAGCTCAAATATAACATTTTTTTTAGACATCAATCAAATTACTTGGGTCTACTATCAGTTACAATAAAATAAAATGATTTGGGTTGGAGGTTGTTATTATTGATTATTACTATCTCGGTGCAAATAGAATACTCACTGTATGGTCATGTTCCTTCCTTGTTAATCTAACAGTTTATCAACCGAATGGACAAGCACCAATATCTTCTACAGACAAGTCACTCACAAGCAATGATGTACAACAGTTCACGAAACCGAGACGACTAAGGACAGATGAAATTCCTCATATTGTCAATGATTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACGGATTTTTTACGAAATTGAAACATGCTTCAATCATAGTACAATACTGATATTTTTCAGAAACAAGAGTATTTGTTGCTTTAAAGCACAAAGACATTTTTCAAGTCACTTAACATGTTCAATGTGATGTAAATTGCAGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACCTGAACAATTCATGAAAGATAAAGTAAATGACAGAACAGATGAATATGGCGGATCGCTCGAGAATCGTTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGCGAATGAGATAGGAGCAGATAAAGTTGGAATCAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCTCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGGTGATGAAACGATTGAAAGCCCTTACAGTCTGGTGCCAATGAGAAAGGCTTTCAATGGTACTTTCATGGTTGCAGGAGGCTATGACAGACAAGATGGGATCAATGCTATAGCAGATAATAGGGCAGACCTTGTTGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCTCTTAATGCTCCTCTCAATAAATATAACAGGGAGACATTCTACATTTCTGATCCGGTGGTAGGTTATACGGACTATCCATTTCTTGAATGA
Protein sequence

>MS.gene024836.t1

MGIKMEGTNITDPIPLLTPYKMGKFNLAHRVVLAPLTRMRSYNNVPQPIAIKYYSQRTSKGGFLIAEATGVSDTAQGYPNTPGIWTKEHVEAWKPIVDAVHDKGGIFFCQIWHAGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLRTDEIPHIVNDFRLAARNAIEAGFDGVEIHGAHGYLPEQFMKDKVNDRTDEYGGSLENRCRFPLEVVEAVANEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSGDETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIADNRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE