AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21807

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21807.t1 MTR_5g006780 97.035 371 11 0 1 371 1 371 0.0 755
MS.gene21807.t1 MTR_5g006800 92.183 371 27 1 1 371 1 369 0.0 717
MS.gene21807.t1 MTR_5g006750 88.140 371 44 0 1 371 1 371 0.0 697
MS.gene21807.t1 MTR_5g006670 85.831 367 44 3 5 371 1 359 0.0 649
MS.gene21807.t1 MTR_5g006740 82.834 367 61 1 5 371 1 365 0.0 648
MS.gene21807.t1 MTR_5g006710 83.288 365 53 2 7 371 7 363 0.0 635
MS.gene21807.t1 MTR_5g008040 81.081 370 68 1 1 370 3 370 0.0 635
MS.gene21807.t1 MTR_5g006740 78.747 367 59 2 5 371 1 348 0.0 600
MS.gene21807.t1 MTR_5g006720 73.351 379 61 3 4 371 3 352 0.0 558
MS.gene21807.t1 MTR_3g115600 69.231 364 106 2 8 371 6 363 0.0 532
MS.gene21807.t1 MTR_4g125470 53.351 373 157 5 12 370 19 388 5.66e-140 404
MS.gene21807.t1 MTR_5g006730 77.311 119 25 1 1 119 1 117 1.55e-59 189
MS.gene21807.t1 MTR_3g096570 73.494 83 18 2 173 254 3 82 4.99e-32 121
MS.gene21807.t1 MTR_3g096562 67.045 88 26 1 167 254 162 246 3.52e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21807.t1 AT1G76690 77.089 371 83 1 1 371 3 371 0.0 608
MS.gene21807.t1 AT1G76680 77.961 363 78 1 9 371 9 369 0.0 602
MS.gene21807.t1 AT1G76680 72.938 388 78 2 9 371 9 394 0.0 588
MS.gene21807.t1 AT1G09400 68.976 332 95 2 18 349 1 324 7.16e-176 492
MS.gene21807.t1 AT1G09400 70.741 270 73 1 80 349 2 265 1.69e-145 412
MS.gene21807.t1 AT2G06050 51.724 377 161 5 12 370 12 385 1.21e-136 395
MS.gene21807.t1 AT2G06050 51.724 377 161 5 12 370 12 385 1.21e-136 395
MS.gene21807.t1 AT2G06050 51.724 377 161 5 12 370 12 385 1.21e-136 395
MS.gene21807.t1 AT1G17990 70.769 260 69 3 9 268 6 258 6.74e-136 389
MS.gene21807.t1 AT1G18020 70.769 260 69 3 9 268 6 258 6.74e-136 389
MS.gene21807.t1 AT1G17990 67.692 260 69 4 9 268 6 250 3.02e-127 366

Find 101 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.2:-1415670 None:intergenic
TAACGAATTGGGACTTTATA+TGG 0.209345 5.2:+1415423 MS.gene21807:CDS
TCTACTTACTCCATACAAAA+TGG 0.231158 5.2:+1414347 MS.gene21807:CDS
GTTGGAAGAGTTTCTGATTC+TGG 0.251518 5.2:+1414733 MS.gene21807:CDS
TACATTTCTGATCCAGTTCT+AGG 0.288195 5.2:+1415733 MS.gene21807:CDS
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5.2:+1414465 MS.gene21807:intron
CTCCTCTGAACAAGTATAAC+AGG 0.317873 5.2:+1415701 MS.gene21807:CDS
GTTAATGCTCTCAATAAATA+TGG 0.321513 5.2:+1415445 MS.gene21807:CDS
CTCATTGGCACAAGGGTGTC+GGG 0.341149 5.2:-1415529 None:intergenic
ATCCAGACACGCCAGGTATA+TGG 0.350535 5.2:+1414626 MS.gene21807:CDS
GTCCATATACCTGGCGTGTC+TGG 0.353329 5.2:-1414628 None:intergenic
CCTTTGAAGGCCTTTCTCAT+TGG 0.383217 5.2:-1415544 None:intergenic
TCAATGCCATAGTTGAAAAC+AGG 0.384857 5.2:+1415608 MS.gene21807:CDS
AGACTCCAACCCTAACGAAT+TGG 0.384935 5.2:+1415411 MS.gene21807:CDS
AAACCATTACTTCGAATTTG+TGG 0.394649 5.2:-1414917 None:intergenic
ATATAAAGTCCCAATTCGTT+AGG 0.397047 5.2:-1415421 None:intergenic
TGGTATTCTTTACTGTCATA+TGG 0.399133 5.2:+1415465 MS.gene21807:CDS
GCATCAAGTGCAAATCTCTT+TGG 0.407422 5.2:-1415679 None:intergenic
AGGGCAGACCTTGTTGTATA+TGG 0.411291 5.2:+1415628 MS.gene21807:CDS
CTGAAGTCATTGACAATGTT+CGG 0.412919 5.2:-1414989 None:intergenic
GAGATAGGAGCTGATAAAGT+TGG 0.416753 5.2:+1415349 MS.gene21807:CDS
GACTCCAACCCTAACGAATT+GGG 0.419325 5.2:+1415412 MS.gene21807:CDS
GAACCGTTGTCGGTTTGCTT+TGG 0.420051 5.2:+1415303 MS.gene21807:CDS
TCATCTGTCCTTAGCCGCCT+TGG 0.434930 5.2:-1414962 None:intergenic
CTACTTACTCCATACAAAAT+GGG 0.440009 5.2:+1414348 MS.gene21807:CDS
AACCATAAAAGTGCCTTTGA+AGG 0.444091 5.2:-1415557 None:intergenic
GTGCAAATTGCAGGATTTGA+TGG 0.444981 5.2:+1415187 MS.gene21807:intron
CTCACAAGACAAAGATCATA+TGG 0.449702 5.2:+1414493 MS.gene21807:CDS
GCAAATTCGATCTATCTCAT+AGG 0.451023 5.2:+1414370 MS.gene21807:CDS
TCTCATTGGCACAAGGGTGT+CGG 0.460212 5.2:-1415530 None:intergenic
CTAAAGAGCACGTCGAGGCT+TGG 0.460997 5.2:+1414650 MS.gene21807:CDS
GCATGAACAGCATCCACAAT+GGG 0.464445 5.2:-1414676 None:intergenic
GACTTATCTGTAGATGATAT+TGG 0.464557 5.2:-1414887 None:intergenic
AATGACAGAACAGATGAATA+TGG 0.470052 5.2:+1415268 MS.gene21807:CDS
CATTCTGCATATTCTGCAAA+AGG 0.473703 5.2:-1415385 None:intergenic
TTTGATGGGGTTGAAATCCA+TGG 0.479079 5.2:+1415202 MS.gene21807:CDS
TAGTCAGTATAACCTAGAAC+TGG 0.480015 5.2:-1415745 None:intergenic
GTCAGAGACACCGGTAGCTT+CGG 0.483228 5.2:-1414590 None:intergenic
CACCCTTGTGCCAATGAGAA+AGG 0.484128 5.2:+1415534 MS.gene21807:CDS
GTTGAAATCCATGGGGCTCA+TGG 0.498562 5.2:+1415211 MS.gene21807:CDS
GATATTGGTGCCTGTCCATT+CGG 0.502015 5.2:-1414872 None:intergenic
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.2:-1414523 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.502113 5.2:+1415188 MS.gene21807:intron
CAGAGAGCCACCGGCTCTAA+CGG 0.506975 5.2:+1414553 MS.gene21807:CDS
ACACCACAAATTCGAAGTAA+TGG 0.507759 5.2:+1414914 MS.gene21807:CDS
CGTAATCAAGTGAAAATGGC+TGG 0.509462 5.2:+1414300 None:intergenic
ATGCCAAATCTGACAAAAGA+AGG 0.517640 5.2:-1414710 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.518438 5.2:+1415334 MS.gene21807:CDS
TATAAAGTCCCAATTCGTTA+GGG 0.522588 5.2:-1415420 None:intergenic
GGAGGTTATGACCGACATGA+TGG 0.524813 5.2:+1415583 MS.gene21807:CDS
TGGCTCTCTGTGAATAATAG+AGG 0.529112 5.2:-1414540 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.529555 5.2:+1415293 MS.gene21807:CDS
TTGATGGGGTTGAAATCCAT+GGG 0.529612 5.2:+1415203 MS.gene21807:CDS
CTTTCATGAATTGTTCAAGT+AGG 0.530510 5.2:-1415237 None:intergenic
CAAACCGACAACGGTTCTCA+AGG 0.533263 5.2:-1415297 None:intergenic
TCTGTCCTTAGCCGCCTTGG+TGG 0.535739 5.2:-1414959 None:intergenic
AAGTCCCAATTCGTTAGGGT+TGG 0.539732 5.2:-1415416 None:intergenic
TCACACCACCAAGGCGGCTA+AGG 0.540861 5.2:+1414954 MS.gene21807:CDS
ACTTGCTGCTAGAAATGCTA+TGG 0.544349 5.2:+1415012 MS.gene21807:CDS
GTGGATGCTGTTCATGCTAA+AGG 0.544472 5.2:+1414682 MS.gene21807:CDS
GCTAGAAATGCTATGGAAGC+TGG 0.548470 5.2:+1415019 MS.gene21807:CDS
CAAGGGTATCCAGACACGCC+AGG 0.555989 5.2:+1414619 MS.gene21807:CDS
AGGCCTTTCTCATTGGCACA+AGG 0.557050 5.2:-1415537 None:intergenic
GGTGTCTCTGACACCGCTCA+AGG 0.561959 5.2:+1414601 MS.gene21807:CDS
GTATGGAGTAAGTAGAGGAA+TGG 0.563542 5.2:-1414340 None:intergenic
AGTTTATCAGCCGAATGGAC+AGG 0.564367 5.2:+1414862 MS.gene21807:intron
GAGAAGACCTCCGTTAGAGC+CGG 0.566754 5.2:-1414563 None:intergenic
CTTCTCATAACCGAAGCTAC+CGG 0.572746 5.2:+1414580 MS.gene21807:CDS
CCAATGAGAAAGGCCTTCAA+AGG 0.575485 5.2:+1415544 MS.gene21807:CDS
TATTATTCACAGAGAGCCAC+CGG 0.583608 5.2:+1414544 MS.gene21807:CDS
TCAACAGTTTATCAGCCGAA+TGG 0.583793 5.2:+1414857 MS.gene21807:intron
GGCCTTTCTCATTGGCACAA+GGG 0.585236 5.2:-1415536 None:intergenic
TGCTCTTTAGTCCATATACC+TGG 0.585344 5.2:-1414637 None:intergenic
GAGGTTATGACCGACATGAT+GGG 0.592989 5.2:+1415584 MS.gene21807:CDS
TTTGCAGAATATGCAGAATG+TGG 0.598992 5.2:+1415388 MS.gene21807:CDS
AAGACCTCCGTTAGAGCCGG+TGG 0.607283 5.2:-1414560 None:intergenic
TCATTGGCACAAGGGTGTCG+GGG 0.611088 5.2:-1415528 None:intergenic
CAATGCCATAGTTGAAAACA+GGG 0.613981 5.2:+1415609 MS.gene21807:CDS
TCCCTGTTATACTTGTTCAG+AGG 0.614414 5.2:-1415703 None:intergenic
TATGATCTTTGTCTTGTGAG+TGG 0.615055 5.2:-1414490 None:intergenic
GTGTCTCTGACACCGCTCAA+GGG 0.616121 5.2:+1414602 MS.gene21807:CDS
CGAGGCTTGGAAACCCATTG+TGG 0.618914 5.2:+1414663 MS.gene21807:CDS
CTTCCAAAGCAAACCGACAA+CGG 0.620487 5.2:-1415306 None:intergenic
TATTCTTTACTGTCATATGG+TGG 0.623581 5.2:+1415468 MS.gene21807:CDS
GTAGGTAGCCATGAGCCCCA+TGG 0.625089 5.2:-1415219 None:intergenic
AAACCGACAACGGTTCTCAA+GGG 0.626011 5.2:-1415296 None:intergenic
AGCATGAACAGCATCCACAA+TGG 0.632785 5.2:-1414677 None:intergenic
TTGAGCGGTGTCAGAGACAC+CGG 0.633714 5.2:-1414599 None:intergenic
GAACCAAGAATGAAAACTGT+TGG 0.645257 5.2:+1415490 MS.gene21807:CDS
GACAGAACAGATGAATATGG+TGG 0.647355 5.2:+1415271 MS.gene21807:CDS
AGAGCCACCGGCTCTAACGG+AGG 0.647688 5.2:+1414556 MS.gene21807:CDS
GCAAATTGCAGGATTTGATG+GGG 0.659323 5.2:+1415189 MS.gene21807:intron
TCCTCTGAACAAGTATAACA+GGG 0.662663 5.2:+1415702 MS.gene21807:CDS
TGGCATTGATCCCATCATGT+CGG 0.674367 5.2:-1415594 None:intergenic
TTGCAAAATTCACACCACCA+AGG 0.704294 5.2:+1414945 MS.gene21807:CDS
CGTGTCTGGATACCCTTGAG+CGG 0.705121 5.2:-1414614 None:intergenic
ACAAACGACCATATACAACA+AGG 0.713799 5.2:-1415636 None:intergenic
GAATAATAGAGGATAGCATG+AGG 0.726209 5.2:-1414529 None:intergenic
TGATGGGGTTGAAATCCATG+GGG 0.726824 5.2:+1415204 MS.gene21807:CDS
CAAAATTCACACCACCAAGG+CGG 0.740755 5.2:+1414948 MS.gene21807:CDS
ATGGACTAAAGAGCACGTCG+AGG 0.748737 5.2:+1414645 MS.gene21807:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTTTATTTTATTT+TGG - chr5.2:1415072-1415091 None:intergenic 0.0%
!! ATAAACTGTTGAAAATAACA+TGG - chr5.2:1414849-1414868 None:intergenic 20.0%
!! TATGAACATATGTGTATAAT+AGG - chr5.2:1414787-1414806 None:intergenic 20.0%
!! TTGAAAATAACATGGAAAAT+GGG - chr5.2:1414841-1414860 None:intergenic 20.0%
! ATTATGTAACATACTAACTG+TGG + chr5.2:1415165-1415184 MS.gene21807:intron 25.0%
! GTTAATGCTCTCAATAAATA+TGG + chr5.2:1415445-1415464 MS.gene21807:CDS 25.0%
! GTTGAAAATAACATGGAAAA+TGG - chr5.2:1414842-1414861 None:intergenic 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5.2:1414465-1414484 MS.gene21807:intron 25.0%
AAACCATTACTTCGAATTTG+TGG - chr5.2:1414920-1414939 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.2:1415268-1415287 MS.gene21807:CDS 30.0%
ATATAAAGTCCCAATTCGTT+AGG - chr5.2:1415424-1415443 None:intergenic 30.0%
CTACTTACTCCATACAAAAT+GGG + chr5.2:1414348-1414367 MS.gene21807:CDS 30.0%
CTTTCATGAATTGTTCAAGT+AGG - chr5.2:1415240-1415259 None:intergenic 30.0%
GACTTATCTGTAGATGATAT+TGG - chr5.2:1414890-1414909 None:intergenic 30.0%
TAACGAATTGGGACTTTATA+TGG + chr5.2:1415423-1415442 MS.gene21807:CDS 30.0%
TATAAAGTCCCAATTCGTTA+GGG - chr5.2:1415423-1415442 None:intergenic 30.0%
TATTCTTTACTGTCATATGG+TGG + chr5.2:1415468-1415487 MS.gene21807:CDS 30.0%
TCTACTTACTCCATACAAAA+TGG + chr5.2:1414347-1414366 MS.gene21807:CDS 30.0%
TGGTATTCTTTACTGTCATA+TGG + chr5.2:1415465-1415484 MS.gene21807:CDS 30.0%
! ATTTTGTATGGAGTAAGTAG+AGG - chr5.2:1414348-1414367 None:intergenic 30.0%
!! AACTCTGAAATGAAATGAGT+TGG - chr5.2:1414461-1414480 None:intergenic 30.0%
!! AGATCTTTTTGTTGCTTCAA+AGG + chr5.2:1415124-1415143 MS.gene21807:intron 30.0%
!! GATCTTTTTGTTGCTTCAAA+GGG + chr5.2:1415125-1415144 MS.gene21807:intron 30.0%
ACAAACGACCATATACAACA+AGG - chr5.2:1415639-1415658 None:intergenic 35.0%
ACACCACAAATTCGAAGTAA+TGG + chr5.2:1414914-1414933 MS.gene21807:CDS 35.0%
ATGCCAAATCTGACAAAAGA+AGG - chr5.2:1414713-1414732 None:intergenic 35.0%
CAATGCCATAGTTGAAAACA+GGG + chr5.2:1415609-1415628 MS.gene21807:CDS 35.0%
CATTCTGCATATTCTGCAAA+AGG - chr5.2:1415388-1415407 None:intergenic 35.0%
CTCACAAGACAAAGATCATA+TGG + chr5.2:1414493-1414512 MS.gene21807:CDS 35.0%
CTGAAGTCATTGACAATGTT+CGG - chr5.2:1414992-1415011 None:intergenic 35.0%
GAACCAAGAATGAAAACTGT+TGG + chr5.2:1415490-1415509 MS.gene21807:CDS 35.0%
GAATAATAGAGGATAGCATG+AGG - chr5.2:1414532-1414551 None:intergenic 35.0%
GCAAATTCGATCTATCTCAT+AGG + chr5.2:1414370-1414389 MS.gene21807:CDS 35.0%
TACATTTCTGATCCAGTTCT+AGG + chr5.2:1415733-1415752 MS.gene21807:CDS 35.0%
TAGTCAGTATAACCTAGAAC+TGG - chr5.2:1415748-1415767 None:intergenic 35.0%
TATGATCTTTGTCTTGTGAG+TGG - chr5.2:1414493-1414512 None:intergenic 35.0%
TCAATGCCATAGTTGAAAAC+AGG + chr5.2:1415608-1415627 MS.gene21807:CDS 35.0%
TCCTCTGAACAAGTATAACA+GGG + chr5.2:1415702-1415721 MS.gene21807:CDS 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.2:1415188-1415207 MS.gene21807:intron 35.0%
TTTGCAGAATATGCAGAATG+TGG + chr5.2:1415388-1415407 MS.gene21807:CDS 35.0%
! CTACCTTCTTTTGTCAGATT+TGG + chr5.2:1414707-1414726 MS.gene21807:CDS 35.0%
! TCACCAACAGTTTTCATTCT+TGG - chr5.2:1415496-1415515 None:intergenic 35.0%
! TCGAATTTGCCCATTTTGTA+TGG - chr5.2:1414360-1414379 None:intergenic 35.0%
! TTTTGTCAGATTTGGCATGT+TGG + chr5.2:1414715-1414734 MS.gene21807:CDS 35.0%
!! AACCATAAAAGTGCCTTTGA+AGG - chr5.2:1415560-1415579 None:intergenic 35.0%
CTCCTCTGAACAAGTATAAC+AGG + chr5.2:1415701-1415720 MS.gene21807:CDS 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.2:1415334-1415353 MS.gene21807:CDS 40.0%
GACAGAACAGATGAATATGG+TGG + chr5.2:1415271-1415290 MS.gene21807:CDS 40.0%
GAGATAGGAGCTGATAAAGT+TGG + chr5.2:1415349-1415368 MS.gene21807:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.2:1415673-1415692 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.2:1415189-1415208 MS.gene21807:intron 40.0%
GCATCAAGTGCAAATCTCTT+TGG - chr5.2:1415682-1415701 None:intergenic 40.0%
GTATGGAGTAAGTAGAGGAA+TGG - chr5.2:1414343-1414362 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.2:1415187-1415206 MS.gene21807:intron 40.0%
GTTGGAAGAGTTTCTGATTC+TGG + chr5.2:1414733-1414752 MS.gene21807:CDS 40.0%
TATTATTCACAGAGAGCCAC+CGG + chr5.2:1414544-1414563 MS.gene21807:CDS 40.0%
TCAACAGTTTATCAGCCGAA+TGG + chr5.2:1414857-1414876 MS.gene21807:intron 40.0%
TCCCTGTTATACTTGTTCAG+AGG - chr5.2:1415706-1415725 None:intergenic 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.2:1414640-1414659 None:intergenic 40.0%
TGGCTCTCTGTGAATAATAG+AGG - chr5.2:1414543-1414562 None:intergenic 40.0%
TTGATGGGGTTGAAATCCAT+GGG + chr5.2:1415203-1415222 MS.gene21807:CDS 40.0%
TTGCAAAATTCACACCACCA+AGG + chr5.2:1414945-1414964 MS.gene21807:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.2:1415202-1415221 MS.gene21807:CDS 40.0%
! ACTTGCTGCTAGAAATGCTA+TGG + chr5.2:1415012-1415031 MS.gene21807:CDS 40.0%
!!! AAAGGCACTTTTATGGTTGC+AGG + chr5.2:1415562-1415581 MS.gene21807:CDS 40.0%
AAACCGACAACGGTTCTCAA+GGG - chr5.2:1415299-1415318 None:intergenic 45.0%
AAGTCCCAATTCGTTAGGGT+TGG - chr5.2:1415419-1415438 None:intergenic 45.0%
AGACTCCAACCCTAACGAAT+TGG + chr5.2:1415411-1415430 MS.gene21807:CDS 45.0%
AGCATGAACAGCATCCACAA+TGG - chr5.2:1414680-1414699 None:intergenic 45.0%
AGTTTATCAGCCGAATGGAC+AGG + chr5.2:1414862-1414881 MS.gene21807:intron 45.0%
CAAAATTCACACCACCAAGG+CGG + chr5.2:1414948-1414967 MS.gene21807:CDS 45.0%
CCAATGAGAAAGGCCTTCAA+AGG + chr5.2:1415544-1415563 MS.gene21807:CDS 45.0%
CTAACTGTGGTGCAAATTGC+AGG + chr5.2:1415178-1415197 MS.gene21807:intron 45.0%
CTTCCAAAGCAAACCGACAA+CGG - chr5.2:1415309-1415328 None:intergenic 45.0%
CTTCTCATAACCGAAGCTAC+CGG + chr5.2:1414580-1414599 MS.gene21807:CDS 45.0%
GACTCCAACCCTAACGAATT+GGG + chr5.2:1415412-1415431 MS.gene21807:CDS 45.0%
GAGGTTATGACCGACATGAT+GGG + chr5.2:1415584-1415603 MS.gene21807:CDS 45.0%
GCATGAACAGCATCCACAAT+GGG - chr5.2:1414679-1414698 None:intergenic 45.0%
GCTAGAAATGCTATGGAAGC+TGG + chr5.2:1415019-1415038 MS.gene21807:CDS 45.0%
GTGGATGCTGTTCATGCTAA+AGG + chr5.2:1414682-1414701 MS.gene21807:CDS 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.2:1414526-1414545 None:intergenic 45.0%
TGATGGGGTTGAAATCCATG+GGG + chr5.2:1415204-1415223 MS.gene21807:CDS 45.0%
! AGGGCAGACCTTGTTGTATA+TGG + chr5.2:1415628-1415647 MS.gene21807:CDS 45.0%
! CCTTTGAAGGCCTTTCTCAT+TGG - chr5.2:1415547-1415566 None:intergenic 45.0%
! GATATTGGTGCCTGTCCATT+CGG - chr5.2:1414875-1414894 None:intergenic 45.0%
! GTCTGCCCTGTTTTCAACTA+TGG - chr5.2:1415617-1415636 None:intergenic 45.0%
!! TGGCATTGATCCCATCATGT+CGG - chr5.2:1415597-1415616 None:intergenic 45.0%
!! TTGTTGCTTCAAAGGGCACT+AGG + chr5.2:1415132-1415151 MS.gene21807:intron 45.0%
!!! GGCCTTCAAAGGCACTTTTA+TGG + chr5.2:1415555-1415574 MS.gene21807:CDS 45.0%
AGGCCTTTCTCATTGGCACA+AGG - chr5.2:1415540-1415559 None:intergenic 50.0%
ATCCAGACACGCCAGGTATA+TGG + chr5.2:1414626-1414645 MS.gene21807:CDS 50.0%
CAAACCGACAACGGTTCTCA+AGG - chr5.2:1415300-1415319 None:intergenic 50.0%
CACCCTTGTGCCAATGAGAA+AGG + chr5.2:1415534-1415553 MS.gene21807:CDS 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.2:1415293-1415312 MS.gene21807:CDS 50.0%
GGAGGTTATGACCGACATGA+TGG + chr5.2:1415583-1415602 MS.gene21807:CDS 50.0%
GGCCTTTCTCATTGGCACAA+GGG - chr5.2:1415539-1415558 None:intergenic 50.0%
GTTGAAATCCATGGGGCTCA+TGG + chr5.2:1415211-1415230 MS.gene21807:CDS 50.0%
! ATGGACTAAAGAGCACGTCG+AGG + chr5.2:1414645-1414664 MS.gene21807:CDS 50.0%
! GGCACTTTTATGGTTGCAGG+AGG + chr5.2:1415565-1415584 MS.gene21807:CDS 50.0%
! TCTCATTGGCACAAGGGTGT+CGG - chr5.2:1415533-1415552 None:intergenic 50.0%
!! GAACCGTTGTCGGTTTGCTT+TGG + chr5.2:1415303-1415322 MS.gene21807:CDS 50.0%
CGAGGCTTGGAAACCCATTG+TGG + chr5.2:1414663-1414682 MS.gene21807:CDS 55.0%
CGTGTCTGGATACCCTTGAG+CGG - chr5.2:1414617-1414636 None:intergenic 55.0%
GAGAAGACCTCCGTTAGAGC+CGG - chr5.2:1414566-1414585 None:intergenic 55.0%
GTCAGAGACACCGGTAGCTT+CGG - chr5.2:1414593-1414612 None:intergenic 55.0%
GTCCATATACCTGGCGTGTC+TGG - chr5.2:1414631-1414650 None:intergenic 55.0%
GTGTCTCTGACACCGCTCAA+GGG + chr5.2:1414602-1414621 MS.gene21807:CDS 55.0%
TCATCTGTCCTTAGCCGCCT+TGG - chr5.2:1414965-1414984 None:intergenic 55.0%
! CTAAAGAGCACGTCGAGGCT+TGG + chr5.2:1414650-1414669 MS.gene21807:CDS 55.0%
! TTGAGCGGTGTCAGAGACAC+CGG - chr5.2:1414602-1414621 None:intergenic 55.0%
!! CTCATTGGCACAAGGGTGTC+GGG - chr5.2:1415532-1415551 None:intergenic 55.0%
!! TCATTGGCACAAGGGTGTCG+GGG - chr5.2:1415531-1415550 None:intergenic 55.0%
AAGACCTCCGTTAGAGCCGG+TGG - chr5.2:1414563-1414582 None:intergenic 60.0%
GGTGTCTCTGACACCGCTCA+AGG + chr5.2:1414601-1414620 MS.gene21807:CDS 60.0%
GTAGGTAGCCATGAGCCCCA+TGG - chr5.2:1415222-1415241 None:intergenic 60.0%
TCACACCACCAAGGCGGCTA+AGG + chr5.2:1414954-1414973 MS.gene21807:CDS 60.0%
TCTGTCCTTAGCCGCCTTGG+TGG - chr5.2:1414962-1414981 None:intergenic 60.0%
!! CAAGGGTATCCAGACACGCC+AGG + chr5.2:1414619-1414638 MS.gene21807:CDS 60.0%
!! CAGAGAGCCACCGGCTCTAA+CGG + chr5.2:1414553-1414572 MS.gene21807:CDS 60.0%
!! AGAGCCACCGGCTCTAACGG+AGG + chr5.2:1414556-1414575 MS.gene21807:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1414315 1415783 1414315 ID=MS.gene21807
chr5.2 mRNA 1414315 1415783 1414315 ID=MS.gene21807.t1;Parent=MS.gene21807
chr5.2 exon 1414315 1414391 1414315 ID=MS.gene21807.t1.exon1;Parent=MS.gene21807.t1
chr5.2 CDS 1414315 1414391 1414315 ID=cds.MS.gene21807.t1;Parent=MS.gene21807.t1
chr5.2 exon 1414477 1414754 1414477 ID=MS.gene21807.t1.exon2;Parent=MS.gene21807.t1
chr5.2 CDS 1414477 1414754 1414477 ID=cds.MS.gene21807.t1;Parent=MS.gene21807.t1
chr5.2 exon 1414864 1415040 1414864 ID=MS.gene21807.t1.exon3;Parent=MS.gene21807.t1
chr5.2 CDS 1414864 1415040 1414864 ID=cds.MS.gene21807.t1;Parent=MS.gene21807.t1
chr5.2 exon 1415200 1415783 1415200 ID=MS.gene21807.t1.exon4;Parent=MS.gene21807.t1
chr5.2 CDS 1415200 1415783 1415200 ID=cds.MS.gene21807.t1;Parent=MS.gene21807.t1
Gene Sequence

>MS.gene21807

ATGGCTGGTATTGTTGAATCTGATACCATTCCTCTACTTACTCCATACAAAATGGGCAAATTCGATCTATCTCATAGGTATTTTAATTATCTTTTCATATAATTTCATATTCAATTTCAAGTGCTCAAACGTTCACATAATAACCAACTCATTTCATTTCAGAGTTGTTTTGGCACCACTCACAAGACAAAGATCATATGGCAACGTTCCACAACCTCATGCTATCCTCTATTATTCACAGAGAGCCACCGGCTCTAACGGAGGTCTTCTCATAACCGAAGCTACCGGTGTCTCTGACACCGCTCAAGGGTATCCAGACACGCCAGGTATATGGACTAAAGAGCACGTCGAGGCTTGGAAACCCATTGTGGATGCTGTTCATGCTAAAGGTGCTACCTTCTTTTGTCAGATTTGGCATGTTGGAAGAGTTTCTGATTCTGGTATGTTCTATTTCTTCAAAAAAATTATGCCTATTATACACATATGTTCATACACATTATGTACACACTCGTTAATATATATGCCCATTTTCCATGTTATTTTCAACAGTTTATCAGCCGAATGGACAGGCACCAATATCATCTACAGATAAGTCACTCACACCACAAATTCGAAGTAATGGTTTTAATATTGCAAAATTCACACCACCAAGGCGGCTAAGGACAGATGAAATTCCGAACATTGTCAATGACTTCAGACTTGCTGCTAGAAATGCTATGGAAGCTGGTAACTTTACTAAACTTTACAAATGTCTCCAAAATAAAATAAAAAATTATTCAATGTATCGTAATACAATGTTTGTGATACATAGATCTTTTTGTTGCTTCAAAGGGCACTAGGTCATTTTACAATTATGTAACATACTAACTGTGGTGCAAATTGCAGGATTTGATGGGGTTGAAATCCATGGGGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGTGAATGACAGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGGTTTGCTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGAGCTGATAAAGTTGGAATTAGACTATCACCTTTTGCAGAATATGCAGAATGTGGAGACTCCAACCCTAACGAATTGGGACTTTATATGGTTAATGCTCTCAATAAATATGGTATTCTTTACTGTCATATGGTGGAACCAAGAATGAAAACTGTTGGTGAAAAAACTGAATGCCCCGACACCCTTGTGCCAATGAGAAAGGCCTTCAAAGGCACTTTTATGGTTGCAGGAGGTTATGACCGACATGATGGGATCAATGCCATAGTTGAAAACAGGGCAGACCTTGTTGTATATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTGAACAAGTATAACAGGGAGACGTTCTACATTTCTGATCCAGTTCTAGGTTATACTGACTACCCCTTTCTTGAATGA
Protein sequence

>MS.gene21807.t1

MAGIVESDTIPLLTPYKMGKFDLSHRVVLAPLTRQRSYGNVPQPHAILYYSQRATGSNGGLLITEATGVSDTAQGYPDTPGIWTKEHVEAWKPIVDAVHAKGATFFCQIWHVGRVSDSVYQPNGQAPISSTDKSLTPQIRSNGFNIAKFTPPRRLRTDEIPNIVNDFRLAARNAMEAGFDGVEIHGAHGYLLEQFMKDKVNDRTDEYGGSLENRCRFALEVVEAVANEIGADKVGIRLSPFAEYAECGDSNPNELGLYMVNALNKYGILYCHMVEPRMKTVGEKTECPDTLVPMRKAFKGTFMVAGGYDRHDGINAIVENRADLVVYGRLFLANPDLPKRFALDAPLNKYNRETFYISDPVLGYTDYPFLE