Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40483.t1 | XP_003610769.1 | 97.3 | 369 | 10 | 0 | 1 | 369 | 1 | 369 | 8.20E-214 | 752.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40483.t1 | Q8GYB8 | 77.8 | 369 | 82 | 0 | 1 | 369 | 3 | 371 | 4.5e-176 | 618.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40483.t1 | G7K3S4 | 97.3 | 369 | 10 | 0 | 1 | 369 | 1 | 369 | 5.9e-214 | 752.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058057 | MS.gene40483 | 0.916045 | 2.86E-85 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40483.t1 | MTR_5g006800 | 97.290 | 369 | 10 | 0 | 1 | 369 | 1 | 369 | 0.0 | 747 |
| MS.gene40483.t1 | MTR_5g006780 | 92.992 | 371 | 24 | 1 | 1 | 369 | 1 | 371 | 0.0 | 719 |
| MS.gene40483.t1 | MTR_5g006750 | 87.332 | 371 | 45 | 1 | 1 | 369 | 1 | 371 | 0.0 | 683 |
| MS.gene40483.t1 | MTR_5g008040 | 82.337 | 368 | 65 | 0 | 1 | 368 | 3 | 370 | 0.0 | 647 |
| MS.gene40483.t1 | MTR_5g006670 | 84.932 | 365 | 49 | 1 | 5 | 369 | 1 | 359 | 0.0 | 646 |
| MS.gene40483.t1 | MTR_5g006740 | 82.740 | 365 | 63 | 0 | 5 | 369 | 1 | 365 | 0.0 | 645 |
| MS.gene40483.t1 | MTR_5g006710 | 83.747 | 363 | 53 | 1 | 7 | 369 | 7 | 363 | 0.0 | 638 |
| MS.gene40483.t1 | MTR_5g006740 | 79.452 | 365 | 58 | 1 | 5 | 369 | 1 | 348 | 0.0 | 602 |
| MS.gene40483.t1 | MTR_5g006720 | 73.475 | 377 | 62 | 2 | 4 | 369 | 3 | 352 | 0.0 | 563 |
| MS.gene40483.t1 | MTR_3g115600 | 71.111 | 360 | 100 | 1 | 10 | 369 | 8 | 363 | 0.0 | 546 |
| MS.gene40483.t1 | MTR_4g125470 | 53.639 | 371 | 157 | 4 | 12 | 368 | 19 | 388 | 2.89e-142 | 409 |
| MS.gene40483.t1 | MTR_5g006730 | 83.761 | 117 | 19 | 0 | 1 | 117 | 1 | 117 | 8.82e-68 | 210 |
| MS.gene40483.t1 | MTR_3g096570 | 74.359 | 78 | 17 | 1 | 175 | 252 | 8 | 82 | 2.70e-31 | 119 |
| MS.gene40483.t1 | MTR_3g096562 | 67.857 | 84 | 24 | 1 | 165 | 248 | 162 | 242 | 9.54e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40483.t1 | AT1G76690 | 77.778 | 369 | 82 | 0 | 1 | 369 | 3 | 371 | 0.0 | 615 |
| MS.gene40483.t1 | AT1G76680 | 77.222 | 360 | 82 | 0 | 10 | 369 | 10 | 369 | 0.0 | 599 |
| MS.gene40483.t1 | AT1G76680 | 72.208 | 385 | 82 | 1 | 10 | 369 | 10 | 394 | 0.0 | 586 |
| MS.gene40483.t1 | AT1G09400 | 70.606 | 330 | 91 | 1 | 18 | 347 | 1 | 324 | 2.51e-180 | 503 |
| MS.gene40483.t1 | AT1G09400 | 71.852 | 270 | 70 | 1 | 78 | 347 | 2 | 265 | 6.71e-147 | 416 |
| MS.gene40483.t1 | AT1G17990 | 71.984 | 257 | 67 | 2 | 10 | 266 | 7 | 258 | 1.21e-138 | 395 |
| MS.gene40483.t1 | AT1G18020 | 71.984 | 257 | 67 | 2 | 10 | 266 | 7 | 258 | 1.21e-138 | 395 |
| MS.gene40483.t1 | AT2G06050 | 51.733 | 375 | 162 | 4 | 12 | 368 | 12 | 385 | 1.17e-137 | 397 |
| MS.gene40483.t1 | AT2G06050 | 51.733 | 375 | 162 | 4 | 12 | 368 | 12 | 385 | 1.17e-137 | 397 |
| MS.gene40483.t1 | AT2G06050 | 51.733 | 375 | 162 | 4 | 12 | 368 | 12 | 385 | 1.17e-137 | 397 |
| MS.gene40483.t1 | AT1G17990 | 68.872 | 257 | 67 | 3 | 10 | 266 | 7 | 250 | 4.82e-130 | 373 |
Find 107 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5.3:-1825051 | None:intergenic |
| ATATAAAGTCCCAATTCTTT+AGG | 0.204540 | 5.3:-1824802 | None:intergenic |
| TAAAGAATTGGGACTTTATA+TGG | 0.215484 | 5.3:+1824804 | MS.gene40483:CDS |
| TCACCAACAGTTATCATTCT+TGG | 0.270456 | 5.3:-1824874 | None:intergenic |
| TATAAAGTCCCAATTCTTTA+GGG | 0.287263 | 5.3:-1824801 | None:intergenic |
| CTCCTCTAAACAAGTATAAC+AGG | 0.287689 | 5.3:+1825082 | MS.gene40483:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5.3:+1823368 | MS.gene40483:intron |
| ATCCAAACACGCCGGGTATA+TGG | 0.309625 | 5.3:+1823523 | MS.gene40483:CDS |
| AAAGGCACTTTCATGGTTGC+AGG | 0.311740 | 5.3:+1824943 | MS.gene40483:CDS |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5.3:+1824826 | MS.gene40483:CDS |
| TCCCTGTTATACTTGTTTAG+AGG | 0.330923 | 5.3:-1825084 | None:intergenic |
| TACGTTCCTGATCCAGTTCT+AGG | 0.338102 | 5.3:+1825114 | MS.gene40483:CDS |
| CTCATTGGCACAAGGCTGTC+GGG | 0.340556 | 5.3:-1824910 | None:intergenic |
| GTCCATATACCCGGCGTGTT+TGG | 0.348909 | 5.3:-1823525 | None:intergenic |
| TATGAGAAGACCACCTTTAG+AGG | 0.360557 | 5.3:-1823463 | None:intergenic |
| AGACTCCAACCCTAAAGAAT+TGG | 0.376017 | 5.3:+1824792 | MS.gene40483:CDS |
| GTGCAAATTGCAGGATTTGA+TGG | 0.377428 | 5.3:+1824568 | MS.gene40483:intron |
| TTGAATTTGCCCATCTTGTA+AGG | 0.380236 | 5.3:-1823233 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+TGG | 0.383217 | 5.3:-1824925 | None:intergenic |
| GGCCTTCAAAGGCACTTTCA+TGG | 0.385984 | 5.3:+1824936 | MS.gene40483:CDS |
| TCATGAACAGCATCTACAAT+AGG | 0.392438 | 5.3:-1823573 | None:intergenic |
| TCAACGCCATAGCTGAAAAC+AGG | 0.396930 | 5.3:+1824989 | MS.gene40483:CDS |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5.3:-1825060 | None:intergenic |
| GATATTGGTGCTTGCCCATC+CGG | 0.412505 | 5.3:-1824249 | None:intergenic |
| CGGTTACTTCATTCAAGAAA+AGG | 0.415590 | 5.3:-1825150 | None:intergenic |
| ATACCATTACTTCGAATTTG+TGG | 0.416930 | 5.3:-1824294 | None:intergenic |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5.3:+1824684 | MS.gene40483:CDS |
| CTGAAGTCATTGACAATGTT+CGG | 0.421977 | 5.3:-1824366 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.429144 | 5.3:+1824569 | MS.gene40483:intron |
| AAAGAATACCATATTTATTG+AGG | 0.434046 | 5.3:-1824834 | None:intergenic |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5.3:-1824339 | None:intergenic |
| GCAAATTCAATCTATCTCAT+AGG | 0.435780 | 5.3:+1823246 | MS.gene40483:CDS |
| AACCATGAAAGTGCCTTTGA+AGG | 0.438354 | 5.3:-1824938 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.447363 | 5.3:-1823487 | None:intergenic |
| GAGATAGGAACAGAAAGAGT+TGG | 0.455231 | 5.3:+1824730 | MS.gene40483:CDS |
| TCTCATTGGCACAAGGCTGT+CGG | 0.469927 | 5.3:-1824911 | None:intergenic |
| GACTCCAACCCTAAAGAATT+GGG | 0.474283 | 5.3:+1824793 | MS.gene40483:CDS |
| GGAGGTTACGATCGAAATGA+TGG | 0.474346 | 5.3:+1824964 | MS.gene40483:CDS |
| AGGCTCTCTGAGAGTAATAG+AGG | 0.476512 | 5.3:-1823443 | None:intergenic |
| TTCTGTCAAATTTGGCATGT+TGG | 0.476753 | 5.3:+1823612 | MS.gene40483:CDS |
| AGGGCAGACCTAGTTGTATA+TGG | 0.479108 | 5.3:+1825009 | MS.gene40483:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5.3:-1825126 | None:intergenic |
| ACTTCTTACTCCTTACAAGA+TGG | 0.486533 | 5.3:+1823223 | MS.gene40483:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.490058 | 5.3:-1824833 | None:intergenic |
| CTAAAGAGCACGTTGAGGCT+TGG | 0.492352 | 5.3:+1823547 | MS.gene40483:CDS |
| GGTTACTTCATTCAAGAAAA+GGG | 0.499808 | 5.3:-1825149 | None:intergenic |
| CATTCTGCATACTCTGCAAA+AGG | 0.500218 | 5.3:-1824766 | None:intergenic |
| AAGTCCCAATTCTTTAGGGT+TGG | 0.500435 | 5.3:-1824797 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.501045 | 5.3:+1824715 | MS.gene40483:CDS |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.3:-1823426 | None:intergenic |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.506956 | 5.3:+1824915 | MS.gene40483:CDS |
| TAAGGAGTAAGAAGTGGAAT+GGG | 0.514396 | 5.3:-1823215 | None:intergenic |
| TGAAAGATAAAGTGAATGAC+AGG | 0.515619 | 5.3:+1824635 | MS.gene40483:CDS |
| GTATAACCTAGAACTGGATC+AGG | 0.517171 | 5.3:-1825120 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.517901 | 5.3:+1824396 | MS.gene40483:CDS |
| GGCTTGTCTGTGGAAGATAT+TGG | 0.523697 | 5.3:-1824264 | None:intergenic |
| GTTGGAAGAGTTTCTGATGC+TGG | 0.526670 | 5.3:+1823630 | MS.gene40483:CDS |
| AAACCACAAATTCGAAGTAA+TGG | 0.528619 | 5.3:+1824291 | MS.gene40483:CDS |
| GTAAGGAGTAAGAAGTGGAA+TGG | 0.528759 | 5.3:-1823216 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5.3:+1824674 | MS.gene40483:CDS |
| TTTGATGGGGTTGAAATCCA+TGG | 0.529668 | 5.3:+1824583 | MS.gene40483:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.3:-1824618 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5.3:+1824592 | MS.gene40483:CDS |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5.3:-1824678 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5.3:-1824336 | None:intergenic |
| TTGAGCAGTGTCAGAGACAC+CGG | 0.539225 | 5.3:-1823496 | None:intergenic |
| CTTCTTACTCCTTACAAGAT+GGG | 0.539764 | 5.3:+1823224 | MS.gene40483:CDS |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5.3:+1824331 | MS.gene40483:CDS |
| ATTCTCAACAGTTTATCAGC+CGG | 0.545602 | 5.3:+1824230 | MS.gene40483:intron |
| CAACAGTTTATCAGCCGGAT+GGG | 0.548494 | 5.3:+1824235 | MS.gene40483:intron |
| AATGACAGGACAGATGAGTA+TGG | 0.553924 | 5.3:+1824649 | MS.gene40483:CDS |
| TCAACAGTTTATCAGCCGGA+TGG | 0.554883 | 5.3:+1824234 | MS.gene40483:intron |
| TACTCTCAGAGAGCCTCTAA+AGG | 0.554945 | 5.3:+1823450 | MS.gene40483:CDS |
| AGGCCTTTCTCATTGGCACA+AGG | 0.555706 | 5.3:-1824918 | None:intergenic |
| CTTCTCATAGCCGAAGCTAC+CGG | 0.560076 | 5.3:+1823477 | MS.gene40483:CDS |
| CAAGGCTATCCAAACACGCC+GGG | 0.568991 | 5.3:+1823516 | MS.gene40483:CDS |
| CCAATGAGAAAGGCCTTCAA+AGG | 0.575485 | 5.3:+1824925 | MS.gene40483:CDS |
| TGGTATTCTTTATTGTCACA+TGG | 0.580029 | 5.3:+1824846 | MS.gene40483:CDS |
| TCATTGGCACAAGGCTGTCG+GGG | 0.584370 | 5.3:-1824909 | None:intergenic |
| GGCACTTTCATGGTTGCAGG+AGG | 0.593746 | 5.3:+1824946 | MS.gene40483:CDS |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.3:-1824600 | None:intergenic |
| TTTGCAGAGTATGCAGAATG+TGG | 0.596323 | 5.3:+1824769 | MS.gene40483:CDS |
| CTCACAAGACAAAGATCCTA+CGG | 0.598712 | 5.3:+1823396 | MS.gene40483:CDS |
| ACTTCAGTACAGGAAATGGC+TGG | 0.601525 | 5.3:+1823176 | None:intergenic |
| ATCTTGTAAGGAGTAAGAAG+TGG | 0.605352 | 5.3:-1823221 | None:intergenic |
| GCAAATTGCAGGATTTGATG+GGG | 0.608055 | 5.3:+1824570 | MS.gene40483:intron |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5.3:-1824687 | None:intergenic |
| GGTGTCTCTGACACTGCTCA+AGG | 0.621150 | 5.3:+1823498 | MS.gene40483:CDS |
| ACAAACGACCATATACAACT+AGG | 0.621826 | 5.3:-1825017 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5.3:-1824677 | None:intergenic |
| TGCTCTTTAGTCCATATACC+CGG | 0.626306 | 5.3:-1823534 | None:intergenic |
| CAACGCCATAGCTGAAAACA+GGG | 0.626950 | 5.3:+1824990 | MS.gene40483:CDS |
| GTAGATGCTGTTCATGACAA+AGG | 0.628826 | 5.3:+1823579 | MS.gene40483:CDS |
| GAGGTTACGATCGAAATGAT+GGG | 0.630066 | 5.3:+1824965 | MS.gene40483:CDS |
| TATTCTTTATTGTCACATGG+TGG | 0.639708 | 5.3:+1824849 | MS.gene40483:CDS |
| TAGGATCTTTGTCTTGTGAG+TGG | 0.640382 | 5.3:-1823393 | None:intergenic |
| TCCTCTAAACAAGTATAACA+GGG | 0.645269 | 5.3:+1825083 | MS.gene40483:CDS |
| GACAGGACAGATGAGTATGG+TGG | 0.649651 | 5.3:+1824652 | MS.gene40483:CDS |
| TCAAGGCTATCCAAACACGC+CGG | 0.650428 | 5.3:+1823515 | MS.gene40483:CDS |
| AGGTTGTGGAACATTGCCGT+AGG | 0.656729 | 5.3:-1823412 | None:intergenic |
| TCTCAGAGAGCCTCTAAAGG+TGG | 0.663690 | 5.3:+1823453 | MS.gene40483:CDS |
| GAGTAATAGAGGATAGCATG+AGG | 0.689366 | 5.3:-1823432 | None:intergenic |
| GAACCAAGAATGATAACTGT+TGG | 0.691135 | 5.3:+1824871 | MS.gene40483:CDS |
| TTGCAAAATTCACACCACCA+AGG | 0.719184 | 5.3:+1824322 | MS.gene40483:CDS |
| ATGGACTAAAGAGCACGTTG+AGG | 0.722206 | 5.3:+1823542 | MS.gene40483:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.741166 | 5.3:+1824325 | MS.gene40483:CDS |
| GATGCTGTTCATGACAAAGG+CGG | 0.776205 | 5.3:+1823582 | MS.gene40483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTGTTTACAATAAAA+GGG | + | chr5.3:1824075-1824094 | MS.gene40483:intron | 10.0% |
| !! | CTAATATTGTTTACAATAAA+AGG | + | chr5.3:1824074-1824093 | MS.gene40483:intron | 15.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.3:1824837-1824856 | None:intergenic | 20.0% |
| !! | AACATGACATAAAACATAAA+CGG | + | chr5.3:1823805-1823824 | MS.gene40483:intron | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.3:1824836-1824855 | None:intergenic | 20.0% |
| !! | AATATGATATGATATGTTCT+AGG | + | chr5.3:1823928-1823947 | MS.gene40483:intron | 20.0% |
| !! | AATATGGAATGATAAATGAA+TGG | - | chr5.3:1823289-1823308 | None:intergenic | 20.0% |
| !! | AATTATGTAACATACTTAGT+GGG | + | chr5.3:1824545-1824564 | MS.gene40483:intron | 20.0% |
| !! | TTGTTATCGAGTATTATTAA+GGG | + | chr5.3:1824119-1824138 | MS.gene40483:intron | 20.0% |
| ! | ACATGACATAAAACATAAAC+GGG | + | chr5.3:1823806-1823825 | MS.gene40483:intron | 25.0% |
| ! | ATAAACTGTTGAGAATAACA+TGG | - | chr5.3:1824226-1824245 | None:intergenic | 25.0% |
| ! | ATATAAAGTCCCAATTCTTT+AGG | - | chr5.3:1824805-1824824 | None:intergenic | 25.0% |
| ! | ATCACACATAAATGTTCTAA+TGG | + | chr5.3:1824167-1824186 | MS.gene40483:intron | 25.0% |
| ! | ATTATGTAACATACTTAGTG+GGG | + | chr5.3:1824546-1824565 | MS.gene40483:intron | 25.0% |
| ! | CAATTATGTAACATACTTAG+TGG | + | chr5.3:1824544-1824563 | MS.gene40483:intron | 25.0% |
| ! | CACTAAGTATGTTACATAAT+TGG | - | chr5.3:1824546-1824565 | None:intergenic | 25.0% |
| ! | GTTGTTATCGAGTATTATTA+AGG | + | chr5.3:1824118-1824137 | MS.gene40483:intron | 25.0% |
| ! | TAAAGAATTGGGACTTTATA+TGG | + | chr5.3:1824804-1824823 | MS.gene40483:CDS | 25.0% |
| ! | TATAAAGTCCCAATTCTTTA+GGG | - | chr5.3:1824804-1824823 | None:intergenic | 25.0% |
| ! | TGAGCAATTGAAATTGAATA+TGG | - | chr5.3:1823305-1823324 | None:intergenic | 25.0% |
| ! | TGTTATCGAGTATTATTAAG+GGG | + | chr5.3:1824120-1824139 | MS.gene40483:intron | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5.3:1823368-1823387 | MS.gene40483:intron | 25.0% |
| !! | CAAAAGTATATTTGTACAAC+AGG | - | chr5.3:1824035-1824054 | None:intergenic | 25.0% |
| !! | CTGTTGTACAAATATACTTT+TGG | + | chr5.3:1824033-1824052 | MS.gene40483:intron | 25.0% |
| !! | TTACAATAAAAGGGTATGAT+TGG | + | chr5.3:1824084-1824103 | MS.gene40483:intron | 25.0% |
| !!! | GAGATTTTTGTTACTTTAGA+TGG | + | chr5.3:1824506-1824525 | MS.gene40483:intron | 25.0% |
| !!! | TACATTTTGACTAAAGACAT+AGG | - | chr5.3:1823870-1823889 | None:intergenic | 25.0% |
| AAACCACAAATTCGAAGTAA+TGG | + | chr5.3:1824291-1824310 | MS.gene40483:CDS | 30.0% | |
| ATACCATTACTTCGAATTTG+TGG | - | chr5.3:1824297-1824316 | None:intergenic | 30.0% | |
| CATGACATAAAACATAAACG+GGG | + | chr5.3:1823807-1823826 | MS.gene40483:intron | 30.0% | |
| CTTTAGTCAAAATGTAACTG+CGG | + | chr5.3:1823874-1823893 | MS.gene40483:intron | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.3:1824621-1824640 | None:intergenic | 30.0% | |
| GAGTAAATAACACAAACACA+TGG | - | chr5.3:1823348-1823367 | None:intergenic | 30.0% | |
| GCAAATTCAATCTATCTCAT+AGG | + | chr5.3:1823246-1823265 | MS.gene40483:CDS | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | chr5.3:1824826-1824845 | MS.gene40483:CDS | 30.0% | |
| GTTATCGAGTATTATTAAGG+GGG | + | chr5.3:1824121-1824140 | MS.gene40483:intron | 30.0% | |
| TATTCTTTATTGTCACATGG+TGG | + | chr5.3:1824849-1824868 | MS.gene40483:CDS | 30.0% | |
| TCCTCTAAACAAGTATAACA+GGG | + | chr5.3:1825083-1825102 | MS.gene40483:CDS | 30.0% | |
| TGAAAGATAAAGTGAATGAC+AGG | + | chr5.3:1824635-1824654 | MS.gene40483:CDS | 30.0% | |
| TGGTATTCTTTATTGTCACA+TGG | + | chr5.3:1824846-1824865 | MS.gene40483:CDS | 30.0% | |
| ! | GTGTGTTTTTCTGTCAAATT+TGG | + | chr5.3:1823604-1823623 | MS.gene40483:CDS | 30.0% |
| !! | GGCATTTTAATCAGAGTAAT+AGG | - | chr5.3:1823849-1823868 | None:intergenic | 30.0% |
| !! | TAGGAGTTATTCGTTTTTCT+TGG | + | chr5.3:1823760-1823779 | MS.gene40483:intron | 30.0% |
| AATGTAACTGCGGAAAGAAT+TGG | + | chr5.3:1823884-1823903 | MS.gene40483:intron | 35.0% | |
| ACAAACGACCATATACAACT+AGG | - | chr5.3:1825020-1825039 | None:intergenic | 35.0% | |
| ACCTCAAATCAATACTTGTG+TGG | - | chr5.3:1823711-1823730 | None:intergenic | 35.0% | |
| ACTGAGTGAATTATGTGACT+AGG | + | chr5.3:1823741-1823760 | MS.gene40483:intron | 35.0% | |
| ACTTCTTACTCCTTACAAGA+TGG | + | chr5.3:1823223-1823242 | MS.gene40483:CDS | 35.0% | |
| ATCTTGTAAGGAGTAAGAAG+TGG | - | chr5.3:1823224-1823243 | None:intergenic | 35.0% | |
| ATTCTCAACAGTTTATCAGC+CGG | + | chr5.3:1824230-1824249 | MS.gene40483:intron | 35.0% | |
| CTCCTCTAAACAAGTATAAC+AGG | + | chr5.3:1825082-1825101 | MS.gene40483:CDS | 35.0% | |
| CTGAAGTCATTGACAATGTT+CGG | - | chr5.3:1824369-1824388 | None:intergenic | 35.0% | |
| CTTCTTACTCCTTACAAGAT+GGG | + | chr5.3:1823224-1823243 | MS.gene40483:CDS | 35.0% | |
| GAACCAAGAATGATAACTGT+TGG | + | chr5.3:1824871-1824890 | MS.gene40483:CDS | 35.0% | |
| TAAGGAGTAAGAAGTGGAAT+GGG | - | chr5.3:1823218-1823237 | None:intergenic | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | chr5.3:1825129-1825148 | None:intergenic | 35.0% | |
| TCACCAACAGTTATCATTCT+TGG | - | chr5.3:1824877-1824896 | None:intergenic | 35.0% | |
| TCATGAACAGCATCTACAAT+AGG | - | chr5.3:1823576-1823595 | None:intergenic | 35.0% | |
| TCCCTGTTATACTTGTTTAG+AGG | - | chr5.3:1825087-1825106 | None:intergenic | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.3:1824569-1824588 | MS.gene40483:intron | 35.0% | |
| TTCTGTCAAATTTGGCATGT+TGG | + | chr5.3:1823612-1823631 | MS.gene40483:CDS | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5.3:1823236-1823255 | None:intergenic | 35.0% | |
| ! | CATTCAGTTTTCCTCACTTA+AGG | - | chr5.3:1823974-1823993 | None:intergenic | 35.0% |
| !! | ATGATATGTTCTAGGACAGT+AGG | + | chr5.3:1823936-1823955 | MS.gene40483:intron | 35.0% |
| !! | ATTGATTTGAGGTTTCCTTG+TGG | + | chr5.3:1823718-1823737 | MS.gene40483:intron | 35.0% |
| !! | TTGTTACTTTAGATGGCACT+AGG | + | chr5.3:1824513-1824532 | MS.gene40483:intron | 35.0% |
| !!! | CTTCGAATTTGTGGTTTTAG+TGG | - | chr5.3:1824288-1824307 | None:intergenic | 35.0% |
| AATGACAGGACAGATGAGTA+TGG | + | chr5.3:1824649-1824668 | MS.gene40483:CDS | 40.0% | |
| AGACTCCAACCCTAAAGAAT+TGG | + | chr5.3:1824792-1824811 | MS.gene40483:CDS | 40.0% | |
| CACACATGTTACCTTAAGTG+AGG | + | chr5.3:1823960-1823979 | MS.gene40483:intron | 40.0% | |
| CATAATTCACTCAGTCCACA+AGG | - | chr5.3:1823736-1823755 | None:intergenic | 40.0% | |
| CATTCTGCATACTCTGCAAA+AGG | - | chr5.3:1824769-1824788 | None:intergenic | 40.0% | |
| CTCACAAGACAAAGATCCTA+CGG | + | chr5.3:1823396-1823415 | MS.gene40483:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.3:1824715-1824734 | MS.gene40483:CDS | 40.0% | |
| GACTCCAACCCTAAAGAATT+GGG | + | chr5.3:1824793-1824812 | MS.gene40483:CDS | 40.0% | |
| GAGATAGGAACAGAAAGAGT+TGG | + | chr5.3:1824730-1824749 | MS.gene40483:CDS | 40.0% | |
| GAGGTTACGATCGAAATGAT+GGG | + | chr5.3:1824965-1824984 | MS.gene40483:CDS | 40.0% | |
| GAGTAATAGAGGATAGCATG+AGG | - | chr5.3:1823435-1823454 | None:intergenic | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.3:1825054-1825073 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.3:1824570-1824589 | MS.gene40483:intron | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1824396-1824415 | MS.gene40483:CDS | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | chr5.3:1825063-1825082 | None:intergenic | 40.0% | |
| GTAAGGAGTAAGAAGTGGAA+TGG | - | chr5.3:1823219-1823238 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGACAA+AGG | + | chr5.3:1823579-1823598 | MS.gene40483:CDS | 40.0% | |
| GTATAACCTAGAACTGGATC+AGG | - | chr5.3:1825123-1825142 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.3:1824568-1824587 | MS.gene40483:intron | 40.0% | |
| TAGGATCTTTGTCTTGTGAG+TGG | - | chr5.3:1823396-1823415 | None:intergenic | 40.0% | |
| TATGAGAAGACCACCTTTAG+AGG | - | chr5.3:1823466-1823485 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+CGG | - | chr5.3:1823537-1823556 | None:intergenic | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | chr5.3:1824322-1824341 | MS.gene40483:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.3:1824583-1824602 | MS.gene40483:CDS | 40.0% | |
| TTTGCAGAGTATGCAGAATG+TGG | + | chr5.3:1824769-1824788 | MS.gene40483:CDS | 40.0% | |
| !! | AACCATGAAAGTGCCTTTGA+AGG | - | chr5.3:1824941-1824960 | None:intergenic | 40.0% |
| !! | AAGTCCCAATTCTTTAGGGT+TGG | - | chr5.3:1824800-1824819 | None:intergenic | 40.0% |
| !! | GCCACACAAGTATTGATTTG+AGG | + | chr5.3:1823707-1823726 | MS.gene40483:intron | 40.0% |
| AAACCGACAACGGTTCTCAA+GGG | - | chr5.3:1824680-1824699 | None:intergenic | 45.0% | |
| AATACTTGTGTGGCAACTCG+CGG | - | chr5.3:1823701-1823720 | None:intergenic | 45.0% | |
| AGGGCAGACCTAGTTGTATA+TGG | + | chr5.3:1825009-1825028 | MS.gene40483:CDS | 45.0% | |
| CAAAATTCACACCACCAAGG+CGG | + | chr5.3:1824325-1824344 | MS.gene40483:CDS | 45.0% | |
| CAACAGTTTATCAGCCGGAT+GGG | + | chr5.3:1824235-1824254 | MS.gene40483:intron | 45.0% | |
| CAACGCCATAGCTGAAAACA+GGG | + | chr5.3:1824990-1825009 | MS.gene40483:CDS | 45.0% | |
| CCAATGAGAAAGGCCTTCAA+AGG | + | chr5.3:1824925-1824944 | MS.gene40483:CDS | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | chr5.3:1824690-1824709 | None:intergenic | 45.0% | |
| GATGCTGTTCATGACAAAGG+CGG | + | chr5.3:1823582-1823601 | MS.gene40483:CDS | 45.0% | |
| GGAGGTTACGATCGAAATGA+TGG | + | chr5.3:1824964-1824983 | MS.gene40483:CDS | 45.0% | |
| GGCTTGTCTGTGGAAGATAT+TGG | - | chr5.3:1824267-1824286 | None:intergenic | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.3:1824592-1824611 | MS.gene40483:CDS | 45.0% | |
| GTTGGAAGAGTTTCTGATGC+TGG | + | chr5.3:1823630-1823649 | MS.gene40483:CDS | 45.0% | |
| TACGTTCCTGATCCAGTTCT+AGG | + | chr5.3:1825114-1825133 | MS.gene40483:CDS | 45.0% | |
| TACTCTCAGAGAGCCTCTAA+AGG | + | chr5.3:1823450-1823469 | MS.gene40483:CDS | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.3:1823429-1823448 | None:intergenic | 45.0% | |
| TCAACAGTTTATCAGCCGGA+TGG | + | chr5.3:1824234-1824253 | MS.gene40483:intron | 45.0% | |
| TCAACGCCATAGCTGAAAAC+AGG | + | chr5.3:1824989-1825008 | MS.gene40483:CDS | 45.0% | |
| ! | AGGCTCTCTGAGAGTAATAG+AGG | - | chr5.3:1823446-1823465 | None:intergenic | 45.0% |
| ! | ATGGACTAAAGAGCACGTTG+AGG | + | chr5.3:1823542-1823561 | MS.gene40483:CDS | 45.0% |
| ! | CCTTTGAAGGCCTTTCTCAT+TGG | - | chr5.3:1824928-1824947 | None:intergenic | 45.0% |
| !! | AAAGGCACTTTCATGGTTGC+AGG | + | chr5.3:1824943-1824962 | MS.gene40483:CDS | 45.0% |
| !! | CTCGCGGTACTTTTGTTTAC+TGG | - | chr5.3:1823685-1823704 | None:intergenic | 45.0% |
| !!! | TGGTTTTAGTGGCTTGTCTG+TGG | - | chr5.3:1824277-1824296 | None:intergenic | 45.0% |
| AGGCCTTTCTCATTGGCACA+AGG | - | chr5.3:1824921-1824940 | None:intergenic | 50.0% | |
| AGGTTGTGGAACATTGCCGT+AGG | - | chr5.3:1823415-1823434 | None:intergenic | 50.0% | |
| ATCCAAACACGCCGGGTATA+TGG | + | chr5.3:1823523-1823542 | MS.gene40483:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | chr5.3:1824681-1824700 | None:intergenic | 50.0% | |
| CTTAGTGGGGTGCAAATTGC+AGG | + | chr5.3:1824559-1824578 | MS.gene40483:intron | 50.0% | |
| CTTCTCATAGCCGAAGCTAC+CGG | + | chr5.3:1823477-1823496 | MS.gene40483:CDS | 50.0% | |
| GACAGGACAGATGAGTATGG+TGG | + | chr5.3:1824652-1824671 | MS.gene40483:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.3:1824674-1824693 | MS.gene40483:CDS | 50.0% | |
| TCAAGGCTATCCAAACACGC+CGG | + | chr5.3:1823515-1823534 | MS.gene40483:CDS | 50.0% | |
| TCTCATTGGCACAAGGCTGT+CGG | - | chr5.3:1824914-1824933 | None:intergenic | 50.0% | |
| TTGAGCAGTGTCAGAGACAC+CGG | - | chr5.3:1823499-1823518 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | + | chr5.3:1824915-1824934 | MS.gene40483:CDS | 50.0% |
| ! | CTAAAGAGCACGTTGAGGCT+TGG | + | chr5.3:1823547-1823566 | MS.gene40483:CDS | 50.0% |
| ! | GATATTGGTGCTTGCCCATC+CGG | - | chr5.3:1824252-1824271 | None:intergenic | 50.0% |
| ! | GTCTGCCCTGTTTTCAGCTA+TGG | - | chr5.3:1824998-1825017 | None:intergenic | 50.0% |
| ! | TCTCAGAGAGCCTCTAAAGG+TGG | + | chr5.3:1823453-1823472 | MS.gene40483:CDS | 50.0% |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | chr5.3:1824684-1824703 | MS.gene40483:CDS | 50.0% |
| !! | GGCCTTCAAAGGCACTTTCA+TGG | + | chr5.3:1824936-1824955 | MS.gene40483:CDS | 50.0% |
| CAAGGCTATCCAAACACGCC+GGG | + | chr5.3:1823516-1823535 | MS.gene40483:CDS | 55.0% | |
| CTCATTGGCACAAGGCTGTC+GGG | - | chr5.3:1824913-1824932 | None:intergenic | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5.3:1824946-1824965 | MS.gene40483:CDS | 55.0% | |
| GGTGTCTCTGACACTGCTCA+AGG | + | chr5.3:1823498-1823517 | MS.gene40483:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.3:1824603-1824622 | None:intergenic | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | chr5.3:1823490-1823509 | None:intergenic | 55.0% | |
| GTCCATATACCCGGCGTGTT+TGG | - | chr5.3:1823528-1823547 | None:intergenic | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | chr5.3:1824342-1824361 | None:intergenic | 55.0% | |
| TCATTGGCACAAGGCTGTCG+GGG | - | chr5.3:1824912-1824931 | None:intergenic | 55.0% | |
| TCACACCACCAAGGCGGCTA+AGG | + | chr5.3:1824331-1824350 | MS.gene40483:CDS | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | chr5.3:1824339-1824358 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1823191 | 1825164 | 1823191 | ID=MS.gene40483 |
| chr5.3 | mRNA | 1823191 | 1825164 | 1823191 | ID=MS.gene40483.t1;Parent=MS.gene40483 |
| chr5.3 | exon | 1823191 | 1823267 | 1823191 | ID=MS.gene40483.t1.exon1;Parent=MS.gene40483.t1 |
| chr5.3 | CDS | 1823191 | 1823267 | 1823191 | ID=cds.MS.gene40483.t1;Parent=MS.gene40483.t1 |
| chr5.3 | exon | 1823380 | 1823651 | 1823380 | ID=MS.gene40483.t1.exon2;Parent=MS.gene40483.t1 |
| chr5.3 | CDS | 1823380 | 1823651 | 1823380 | ID=cds.MS.gene40483.t1;Parent=MS.gene40483.t1 |
| chr5.3 | exon | 1824241 | 1824417 | 1824241 | ID=MS.gene40483.t1.exon3;Parent=MS.gene40483.t1 |
| chr5.3 | CDS | 1824241 | 1824417 | 1824241 | ID=cds.MS.gene40483.t1;Parent=MS.gene40483.t1 |
| chr5.3 | exon | 1824581 | 1825164 | 1824581 | ID=MS.gene40483.t1.exon4;Parent=MS.gene40483.t1 |
| chr5.3 | CDS | 1824581 | 1825164 | 1824581 | ID=cds.MS.gene40483.t1;Parent=MS.gene40483.t1 |
| Gene Sequence |
| Protein sequence |
