AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001055

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001055.t1 MTR_5g006750 97.035 371 11 0 1 371 1 371 0.0 750
MS.gene001055.t1 MTR_5g006780 89.488 371 39 0 1 371 1 371 0.0 701
MS.gene001055.t1 MTR_5g006800 86.792 371 47 1 1 371 1 369 0.0 679
MS.gene001055.t1 MTR_5g006670 82.561 367 56 2 5 371 1 359 0.0 635
MS.gene001055.t1 MTR_5g006740 79.564 367 73 1 5 371 1 365 0.0 629
MS.gene001055.t1 MTR_5g008040 77.568 370 81 1 1 370 3 370 0.0 617
MS.gene001055.t1 MTR_5g006710 80.548 365 63 2 7 371 7 363 0.0 612
MS.gene001055.t1 MTR_5g006740 75.749 367 70 2 5 371 1 348 0.0 582
MS.gene001055.t1 MTR_5g006720 70.712 379 71 3 4 371 3 352 0.0 548
MS.gene001055.t1 MTR_3g115600 66.851 362 114 2 10 371 8 363 0.0 516
MS.gene001055.t1 MTR_4g125470 53.351 373 157 5 12 370 19 388 1.74e-140 405
MS.gene001055.t1 MTR_5g006730 76.667 120 26 1 1 120 1 118 6.20e-61 192
MS.gene001055.t1 MTR_3g096570 69.231 78 21 1 177 254 8 82 7.48e-28 110
MS.gene001055.t1 MTR_3g096562 61.364 88 31 1 167 254 162 246 1.28e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001055.t1 AT1G76680 77.624 362 79 1 10 371 10 369 0.0 602
MS.gene001055.t1 AT1G76690 76.796 362 82 1 10 371 12 371 0.0 600
MS.gene001055.t1 AT1G76680 72.610 387 79 2 10 371 10 394 0.0 589
MS.gene001055.t1 AT1G09400 67.771 332 99 2 18 349 1 324 1.18e-172 484
MS.gene001055.t1 AT1G09400 70.000 270 75 1 80 349 2 265 3.22e-143 407
MS.gene001055.t1 AT2G06050 49.337 377 170 5 12 370 12 385 5.07e-132 383
MS.gene001055.t1 AT2G06050 49.337 377 170 5 12 370 12 385 5.07e-132 383
MS.gene001055.t1 AT2G06050 49.337 377 170 5 12 370 12 385 5.07e-132 383
MS.gene001055.t1 AT1G17990 68.340 259 75 3 10 268 7 258 4.37e-131 376
MS.gene001055.t1 AT1G18020 68.340 259 75 3 10 268 7 258 4.37e-131 376
MS.gene001055.t1 AT1G17990 65.251 259 75 4 10 268 7 250 2.45e-122 353

Find 105 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTACTCCTTACAAAA+TGG 0.177254 5.4:+2364514 MS.gene001055:CDS
CAGAGAATTGGGACTTTATA+TGG 0.218697 5.4:+2365543 MS.gene001055:CDS
ATCCAGACACACCGGGTATT+TGG 0.230705 5.4:+2364793 MS.gene001055:CDS
AGGACAGACCTTGTTGTTTA+TGG 0.235193 5.4:+2365748 MS.gene001055:CDS
TACACTTCTGATCCAGTTAT+AGG 0.260093 5.4:+2365853 MS.gene001055:CDS
GCAAATCTCTTCGGCAAATC+TGG 0.277734 5.4:-2365790 None:intergenic
CTACATTCTTCTGTCAGATT+TGG 0.278155 5.4:+2364874 MS.gene001055:CDS
CTGAAGTCATTGACAATGTT+TGG 0.290108 5.4:-2365136 None:intergenic
ATTTCATTTCAGAGTTGTTT+TGG 0.300909 5.4:+2364632 MS.gene001055:intron
GCTAATGCCCTCAATAAATA+TGG 0.309977 5.4:+2365565 MS.gene001055:CDS
GCCCTGTTGTACTTGTTTAG+AGG 0.312031 5.4:-2365823 None:intergenic
TTCATCTATCCTTAGCCGTC+TGG 0.324142 5.4:-2365110 None:intergenic
GGCCTTCAAAGGCACTTTCC+TGG 0.328985 5.4:+2365675 MS.gene001055:CDS
TAAGGAGTAAGAAGAGGAAT+TGG 0.337433 5.4:-2364506 None:intergenic
CATATAAAGTCCCAATTCTC+TGG 0.343157 5.4:-2365542 None:intergenic
GAACCGTTGTCGGATTGTTT+TGG 0.358599 5.4:+2365423 MS.gene001055:CDS
TTTGATGGGGTTGAAATTCA+TGG 0.366172 5.4:+2365322 MS.gene001055:CDS
AGACTCTAATCCCAGAGAAT+TGG 0.370356 5.4:+2365531 MS.gene001055:CDS
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5.4:+2365307 MS.gene001055:intron
CGGTTTCTTCATTCAAGAAA+AGG 0.379016 5.4:-2365889 None:intergenic
CTCCTCTAAACAAGTACAAC+AGG 0.379642 5.4:+2365821 MS.gene001055:CDS
GTCCAAATACCCGGTGTGTC+TGG 0.387956 5.4:-2364795 None:intergenic
GTTGGAAGAGTTTCTGATAC+TGG 0.389203 5.4:+2364900 MS.gene001055:CDS
CTTCTTACTCCTTACAAAAT+GGG 0.390500 5.4:+2364515 MS.gene001055:CDS
GACTCTAATCCCAGAGAATT+GGG 0.395099 5.4:+2365532 MS.gene001055:CDS
TAGTCAGTATAACCTATAAC+TGG 0.418621 5.4:-2365865 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5.4:+2365308 MS.gene001055:intron
ACAGAAGAATGTAGCACCTT+TGG 0.437106 5.4:-2364865 None:intergenic
AAAGAATACCATATTTATTG+AGG 0.443514 5.4:-2365573 None:intergenic
GTTGAAATTCATGGGGCAAA+TGG 0.460599 5.4:+2365331 MS.gene001055:CDS
AAAGGCACTTTCCTGGCTGC+AGG 0.463990 5.4:+2365682 MS.gene001055:CDS
TCAATGCCATAGTTGAAAAC+AGG 0.465840 5.4:+2365728 MS.gene001055:CDS
GATATCGGTGCCTGTCCATT+CGG 0.469149 5.4:-2365019 None:intergenic
AATGACAGAACAGATGAATA+TGG 0.470052 5.4:+2365388 MS.gene001055:CDS
GAAAATTTAATCTAGCTCAT+AGG 0.472046 5.4:+2364537 MS.gene001055:CDS
TCATCTATCCTTAGCCGTCT+GGG 0.477854 5.4:-2365109 None:intergenic
CATTCTGCATATTCTGCAAA+AGG 0.478830 5.4:-2365505 None:intergenic
CAGCCTTGTGCCGATGAGAA+AGG 0.480638 5.4:+2365654 MS.gene001055:CDS
GAGAAGACCTCCGTTAGAAC+CGG 0.487068 5.4:-2364730 None:intergenic
GCATGAACAGCATCCACAAT+GGG 0.488648 5.4:-2364843 None:intergenic
AGCCAGGAAAGTGCCTTTGA+AGG 0.492316 5.4:-2365677 None:intergenic
CAATCCGACAACGGTTCTCA+AGG 0.497852 5.4:-2365417 None:intergenic
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.4:-2364690 None:intergenic
GAGATAGGTGCAGATAGAGT+TGG 0.504106 5.4:+2365469 MS.gene001055:CDS
GTAGGATCTGTTTCTTGTGA+GGG 0.505510 5.4:-2364658 None:intergenic
GGTTTCTTCATTCAAGAAAA+GGG 0.510979 5.4:-2365888 None:intergenic
TTGATGGGGTTGAAATTCAT+GGG 0.511805 5.4:+2365323 MS.gene001055:CDS
TTCTGTCAGATTTGGCATGT+TGG 0.513208 5.4:+2364882 MS.gene001055:CDS
GCATTAAGTGCAAATCTCTT+CGG 0.516430 5.4:-2365799 None:intergenic
TTGAGCGGTGTCAGATATAC+CGG 0.517615 5.4:-2364766 None:intergenic
GTCAGATATACCGGTAGCTT+CGG 0.517815 5.4:-2364757 None:intergenic
GGTCGTAACCTCCTGCAGCC+AGG 0.519395 5.4:-2365693 None:intergenic
CTGCTCTCTGAGAGTAATAG+AGG 0.524441 5.4:-2364707 None:intergenic
TGCAGGAGGTTACGACCGAC+AGG 0.525125 5.4:+2365699 MS.gene001055:CDS
AAGAATACCATATTTATTGA+GGG 0.525355 5.4:-2365572 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.526907 5.4:+2365454 MS.gene001055:CDS
CGTAGGATCTGTTTCTTGTG+AGG 0.527234 5.4:-2364659 None:intergenic
CAGAGAGCAGCCGGTTCTAA+CGG 0.528139 5.4:+2364720 MS.gene001055:CDS
GGCTTGTCTGTAGAAGATAT+CGG 0.532354 5.4:-2365034 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5.4:+2365166 MS.gene001055:CDS
ATATAAAGTCCCAATTCTCT+GGG 0.547129 5.4:-2365541 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.547363 5.4:+2365413 MS.gene001055:CDS
ACACCACAACTTCGAAGTAA+TGG 0.557692 5.4:+2365061 MS.gene001055:CDS
TCACACCGCCCAGACGGCTA+AGG 0.560646 5.4:+2365101 MS.gene001055:CDS
TATTACTCTCAGAGAGCAGC+CGG 0.562746 5.4:+2364711 MS.gene001055:CDS
CCTTTGAAGGCCTTTCTCAT+CGG 0.568654 5.4:-2365664 None:intergenic
TCATCGGCACAAGGCTGTGA+GGG 0.571682 5.4:-2365648 None:intergenic
AGGCCTTTCTCATCGGCACA+AGG 0.573077 5.4:-2365657 None:intergenic
CTTCTCTTAACCGAAGCTAC+CGG 0.577933 5.4:+2364747 MS.gene001055:CDS
ATACCATTACTTCGAAGTTG+TGG 0.579878 5.4:-2365064 None:intergenic
CCGATGAGAAAGGCCTTCAA+AGG 0.584601 5.4:+2365664 MS.gene001055:CDS
CTTCGAAGTTGTGGTGTGAG+TGG 0.589473 5.4:-2365055 None:intergenic
GGCACTTTCCTGGCTGCAGG+AGG 0.593619 5.4:+2365685 MS.gene001055:CDS
CTCATCGGCACAAGGCTGTG+AGG 0.596585 5.4:-2365649 None:intergenic
CTCACAAGAAACAGATCCTA+CGG 0.597427 5.4:+2364660 MS.gene001055:CDS
GGTATATCTGACACCGCTCA+AGG 0.602455 5.4:+2364768 MS.gene001055:CDS
CAAGGATATCCAGACACACC+GGG 0.603203 5.4:+2364786 MS.gene001055:CDS
TAGGATCTGTTTCTTGTGAG+GGG 0.607086 5.4:-2364657 None:intergenic
GGAGGTTACGACCGACAGGA+TGG 0.607400 5.4:+2365703 MS.gene001055:CDS
GCAAATTGCAGGATTTGATG+GGG 0.608055 5.4:+2365309 MS.gene001055:intron
CTAAAGAGCATGTCGAGGCG+TGG 0.609058 5.4:+2364817 MS.gene001055:CDS
CGGAATTCACACCGCCCAGA+CGG 0.612075 5.4:+2365095 MS.gene001055:CDS
GTGGATGCTGTTCATGCCAA+AGG 0.616714 5.4:+2364849 MS.gene001055:CDS
TGCTCTTTAGTCCAAATACC+CGG 0.617459 5.4:-2364804 None:intergenic
GAGGTTACGACCGACAGGAT+GGG 0.619159 5.4:+2365704 MS.gene001055:CDS
AATCCGACAACGGTTCTCAA+GGG 0.625686 5.4:-2365416 None:intergenic
GGCATGAACAGCATCCACAA+TGG 0.625777 5.4:-2364844 None:intergenic
TTCTCGGTTCCACCACGTGA+AGG 0.628277 5.4:-2365597 None:intergenic
TGATGGGGTTGAAATTCATG+GGG 0.629040 5.4:+2365324 MS.gene001055:CDS
TGGCATTGATCCCATCCTGT+CGG 0.636462 5.4:-2365714 None:intergenic
AAGTAATGGTATTGATGTCG+CGG 0.637452 5.4:+2365075 MS.gene001055:CDS
TATTCTTTACCTTCACGTGG+TGG 0.638200 5.4:+2365588 MS.gene001055:CDS
TGGTATTCTTTACCTTCACG+TGG 0.641993 5.4:+2365585 MS.gene001055:CDS
GACAGAACAGATGAATATGG+TGG 0.647355 5.4:+2365391 MS.gene001055:CDS
TCAAGGATATCCAGACACAC+CGG 0.652106 5.4:+2364785 MS.gene001055:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5.4:-2364676 None:intergenic
AGAGCAGCCGGTTCTAACGG+AGG 0.662133 5.4:+2364723 MS.gene001055:CDS
CGAGGCGTGGAAACCCATTG+TGG 0.669254 5.4:+2364830 MS.gene001055:CDS
CTTCCAAAACAATCCGACAA+CGG 0.685561 5.4:-2365426 None:intergenic
GAGTAATAGAGGATAGCATG+AGG 0.689366 5.4:-2364696 None:intergenic
TCCTCTAAACAAGTACAACA+GGG 0.691494 5.4:+2365822 MS.gene001055:CDS
TTGGACTAAAGAGCATGTCG+AGG 0.707515 5.4:+2364812 MS.gene001055:CDS
ACAAACGACCATAAACAACA+AGG 0.713799 5.4:-2365756 None:intergenic
TCTATCCTTAGCCGTCTGGG+CGG 0.735343 5.4:-2365106 None:intergenic
TGTGTCTGGATATCCTTGAG+CGG 0.747606 5.4:-2364781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATACCATATTTATTG+AGG - chr5.4:2365576-2365595 None:intergenic 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5.4:2365575-2365594 None:intergenic 20.0%
!!! TTAAATTTTCCCATTTTGTA+AGG - chr5.4:2364527-2364546 None:intergenic 20.0%
! AATTCTGTAACATACTCATT+GGG + chr5.4:2365284-2365303 MS.gene001055:intron 25.0%
!! ATTTCATTTCAGAGTTGTTT+TGG + chr5.4:2364632-2364651 MS.gene001055:intron 25.0%
!! GAAAATTTAATCTAGCTCAT+AGG + chr5.4:2364537-2364556 MS.gene001055:CDS 25.0%
!! TCATTAACAGTTTTCATTCT+CGG - chr5.4:2365616-2365635 None:intergenic 25.0%
!!! CACATAACTTTGAAATTCAA+TGG - chr5.4:2364596-2364615 None:intergenic 25.0%
!!! GATATTTTTGTTGCTTTAGA+GGG + chr5.4:2365245-2365264 MS.gene001055:intron 25.0%
!!! TAACTTTGAAATTCAATGGA+AGG - chr5.4:2364592-2364611 None:intergenic 25.0%
!!! TGATATTTTTGTTGCTTTAG+AGG + chr5.4:2365244-2365263 MS.gene001055:intron 25.0%
AATGACAGAACAGATGAATA+TGG + chr5.4:2365388-2365407 MS.gene001055:CDS 30.0%
ATATAAAGTCCCAATTCTCT+GGG - chr5.4:2365544-2365563 None:intergenic 30.0%
ATTCTGTAACATACTCATTG+GGG + chr5.4:2365285-2365304 MS.gene001055:intron 30.0%
CAATTCTGTAACATACTCAT+TGG + chr5.4:2365283-2365302 MS.gene001055:intron 30.0%
CTTCTTACTCCTTACAAAAT+GGG + chr5.4:2364515-2364534 MS.gene001055:CDS 30.0%
GCAACAAAAATATCAATGTC+TGG - chr5.4:2365239-2365258 None:intergenic 30.0%
GGAAAAGAACATATAGATGT+AGG - chr5.4:2364984-2365003 None:intergenic 30.0%
TAGTCAGTATAACCTATAAC+TGG - chr5.4:2365868-2365887 None:intergenic 30.0%
TCTTCTTACTCCTTACAAAA+TGG + chr5.4:2364514-2364533 MS.gene001055:CDS 30.0%
! ATTTTGTAAGGAGTAAGAAG+AGG - chr5.4:2364515-2364534 None:intergenic 30.0%
ACAAACGACCATAAACAACA+AGG - chr5.4:2365759-2365778 None:intergenic 35.0%
ATACCATTACTTCGAAGTTG+TGG - chr5.4:2365067-2365086 None:intergenic 35.0%
CAGAGAATTGGGACTTTATA+TGG + chr5.4:2365543-2365562 MS.gene001055:CDS 35.0%
CATATAAAGTCCCAATTCTC+TGG - chr5.4:2365545-2365564 None:intergenic 35.0%
CATTCTGCATATTCTGCAAA+AGG - chr5.4:2365508-2365527 None:intergenic 35.0%
CTACATTCTTCTGTCAGATT+TGG + chr5.4:2364874-2364893 MS.gene001055:CDS 35.0%
CTGAAGTCATTGACAATGTT+TGG - chr5.4:2365139-2365158 None:intergenic 35.0%
GCATTAAGTGCAAATCTCTT+CGG - chr5.4:2365802-2365821 None:intergenic 35.0%
GCTAATGCCCTCAATAAATA+TGG + chr5.4:2365565-2365584 MS.gene001055:CDS 35.0%
GGAAGGATGAATGAAATGAA+AGG - chr5.4:2364575-2364594 None:intergenic 35.0%
TAAGGAGTAAGAAGAGGAAT+TGG - chr5.4:2364509-2364528 None:intergenic 35.0%
TACACTTCTGATCCAGTTAT+AGG + chr5.4:2365853-2365872 MS.gene001055:CDS 35.0%
TCAATGCCATAGTTGAAAAC+AGG + chr5.4:2365728-2365747 MS.gene001055:CDS 35.0%
TCCTCTAAACAAGTACAACA+GGG + chr5.4:2365822-2365841 MS.gene001055:CDS 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.4:2365308-2365327 MS.gene001055:intron 35.0%
TTGATGGGGTTGAAATTCAT+GGG + chr5.4:2365323-2365342 MS.gene001055:CDS 35.0%
TTTGATGGGGTTGAAATTCA+TGG + chr5.4:2365322-2365341 MS.gene001055:CDS 35.0%
!! AAGTAATGGTATTGATGTCG+CGG + chr5.4:2365075-2365094 MS.gene001055:CDS 35.0%
ACACCACAACTTCGAAGTAA+TGG + chr5.4:2365061-2365080 MS.gene001055:CDS 40.0%
ACAGAAGAATGTAGCACCTT+TGG - chr5.4:2364868-2364887 None:intergenic 40.0%
AGACTCTAATCCCAGAGAAT+TGG + chr5.4:2365531-2365550 MS.gene001055:CDS 40.0%
ATTCGGCTGAAAAACTGTTG+GGG - chr5.4:2365005-2365024 None:intergenic 40.0%
CATTCGGCTGAAAAACTGTT+GGG - chr5.4:2365006-2365025 None:intergenic 40.0%
CTCACAAGAAACAGATCCTA+CGG + chr5.4:2364660-2364679 MS.gene001055:CDS 40.0%
CTCCTCTAAACAAGTACAAC+AGG + chr5.4:2365821-2365840 MS.gene001055:CDS 40.0%
CTTCCAAAACAATCCGACAA+CGG - chr5.4:2365429-2365448 None:intergenic 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.4:2365454-2365473 MS.gene001055:CDS 40.0%
GACAGAACAGATGAATATGG+TGG + chr5.4:2365391-2365410 MS.gene001055:CDS 40.0%
GACTCTAATCCCAGAGAATT+GGG + chr5.4:2365532-2365551 MS.gene001055:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5.4:2364699-2364718 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.4:2365309-2365328 MS.gene001055:intron 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.4:2365166-2365185 MS.gene001055:CDS 40.0%
GGCTTGTCTGTAGAAGATAT+CGG - chr5.4:2365037-2365056 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.4:2365307-2365326 MS.gene001055:intron 40.0%
GTTGAAATTCATGGGGCAAA+TGG + chr5.4:2365331-2365350 MS.gene001055:CDS 40.0%
GTTGGAAGAGTTTCTGATAC+TGG + chr5.4:2364900-2364919 MS.gene001055:CDS 40.0%
TATTCTTTACCTTCACGTGG+TGG + chr5.4:2365588-2365607 MS.gene001055:CDS 40.0%
TGATGGGGTTGAAATTCATG+GGG + chr5.4:2365324-2365343 MS.gene001055:CDS 40.0%
TGCTCTTTAGTCCAAATACC+CGG - chr5.4:2364807-2364826 None:intergenic 40.0%
TGGTATTCTTTACCTTCACG+TGG + chr5.4:2365585-2365604 MS.gene001055:CDS 40.0%
TTCTGTCAGATTTGGCATGT+TGG + chr5.4:2364882-2364901 MS.gene001055:CDS 40.0%
! GTAGGATCTGTTTCTTGTGA+GGG - chr5.4:2364661-2364680 None:intergenic 40.0%
! GTCTGTCCTGTTTTCAACTA+TGG - chr5.4:2365737-2365756 None:intergenic 40.0%
! TAGGATCTGTTTCTTGTGAG+GGG - chr5.4:2364660-2364679 None:intergenic 40.0%
!! AGGACAGACCTTGTTGTTTA+TGG + chr5.4:2365748-2365767 MS.gene001055:CDS 40.0%
AATCCGACAACGGTTCTCAA+GGG - chr5.4:2365419-2365438 None:intergenic 45.0%
CCATTCGGCTGAAAAACTGT+TGG - chr5.4:2365007-2365026 None:intergenic 45.0%
CTTCTCTTAACCGAAGCTAC+CGG + chr5.4:2364747-2364766 MS.gene001055:CDS 45.0%
GAGATAGGTGCAGATAGAGT+TGG + chr5.4:2365469-2365488 MS.gene001055:CDS 45.0%
GCAAATCTCTTCGGCAAATC+TGG - chr5.4:2365793-2365812 None:intergenic 45.0%
GCATGAACAGCATCCACAAT+GGG - chr5.4:2364846-2364865 None:intergenic 45.0%
GCCCTGTTGTACTTGTTTAG+AGG - chr5.4:2365826-2365845 None:intergenic 45.0%
GTCAGATATACCGGTAGCTT+CGG - chr5.4:2364760-2364779 None:intergenic 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.4:2364693-2364712 None:intergenic 45.0%
TATTACTCTCAGAGAGCAGC+CGG + chr5.4:2364711-2364730 MS.gene001055:CDS 45.0%
TCAAGGATATCCAGACACAC+CGG + chr5.4:2364785-2364804 MS.gene001055:CDS 45.0%
TCATCTATCCTTAGCCGTCT+GGG - chr5.4:2365112-2365131 None:intergenic 45.0%
TGTGTCTGGATATCCTTGAG+CGG - chr5.4:2364784-2364803 None:intergenic 45.0%
TTCATCTATCCTTAGCCGTC+TGG - chr5.4:2365113-2365132 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+CGG - chr5.4:2365667-2365686 None:intergenic 45.0%
! CGTAGGATCTGTTTCTTGTG+AGG - chr5.4:2364662-2364681 None:intergenic 45.0%
! CTGCTCTCTGAGAGTAATAG+AGG - chr5.4:2364710-2364729 None:intergenic 45.0%
! GAACCGTTGTCGGATTGTTT+TGG + chr5.4:2365423-2365442 MS.gene001055:CDS 45.0%
! TTGAGCGGTGTCAGATATAC+CGG - chr5.4:2364769-2364788 None:intergenic 45.0%
! TTGGACTAAAGAGCATGTCG+AGG + chr5.4:2364812-2364831 MS.gene001055:CDS 45.0%
!! AGTTTTTCAGCCGAATGGAC+AGG + chr5.4:2365009-2365028 MS.gene001055:intron 45.0%
!! CCAACAGTTTTTCAGCCGAA+TGG + chr5.4:2365004-2365023 MS.gene001055:intron 45.0%
!! TTGTTGCTTTAGAGGGCACT+AGG + chr5.4:2365252-2365271 MS.gene001055:intron 45.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5.4:2364679-2364698 None:intergenic 50.0%
ATCCAGACACACCGGGTATT+TGG + chr5.4:2364793-2364812 MS.gene001055:CDS 50.0%
CAAGGATATCCAGACACACC+GGG + chr5.4:2364786-2364805 MS.gene001055:CDS 50.0%
CAATCCGACAACGGTTCTCA+AGG - chr5.4:2365420-2365439 None:intergenic 50.0%
CCGATGAGAAAGGCCTTCAA+AGG + chr5.4:2365664-2365683 MS.gene001055:CDS 50.0%
CTCATTGGGGTGCAAATTGC+AGG + chr5.4:2365298-2365317 MS.gene001055:intron 50.0%
CTTCGAAGTTGTGGTGTGAG+TGG - chr5.4:2365058-2365077 None:intergenic 50.0%
GAGAAGACCTCCGTTAGAAC+CGG - chr5.4:2364733-2364752 None:intergenic 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.4:2365413-2365432 MS.gene001055:CDS 50.0%
GGCATGAACAGCATCCACAA+TGG - chr5.4:2364847-2364866 None:intergenic 50.0%
GGTATATCTGACACCGCTCA+AGG + chr5.4:2364768-2364787 MS.gene001055:CDS 50.0%
GTGGATGCTGTTCATGCCAA+AGG + chr5.4:2364849-2364868 MS.gene001055:CDS 50.0%
! GATATCGGTGCCTGTCCATT+CGG - chr5.4:2365022-2365041 None:intergenic 50.0%
!! AGCCAGGAAAGTGCCTTTGA+AGG - chr5.4:2365680-2365699 None:intergenic 50.0%
!! TGGCATTGATCCCATCCTGT+CGG - chr5.4:2365717-2365736 None:intergenic 50.0%
AGGCCTTTCTCATCGGCACA+AGG - chr5.4:2365660-2365679 None:intergenic 55.0%
GAGGTTACGACCGACAGGAT+GGG + chr5.4:2365704-2365723 MS.gene001055:CDS 55.0%
GTCCAAATACCCGGTGTGTC+TGG - chr5.4:2364798-2364817 None:intergenic 55.0%
TCATCGGCACAAGGCTGTGA+GGG - chr5.4:2365651-2365670 None:intergenic 55.0%
TCTATCCTTAGCCGTCTGGG+CGG - chr5.4:2365109-2365128 None:intergenic 55.0%
TTCTCGGTTCCACCACGTGA+AGG - chr5.4:2365600-2365619 None:intergenic 55.0%
! CAGAGAGCAGCCGGTTCTAA+CGG + chr5.4:2364720-2364739 MS.gene001055:CDS 55.0%
! CAGCCTTGTGCCGATGAGAA+AGG + chr5.4:2365654-2365673 MS.gene001055:CDS 55.0%
! CTAAAGAGCATGTCGAGGCG+TGG + chr5.4:2364817-2364836 MS.gene001055:CDS 55.0%
!! AAAGGCACTTTCCTGGCTGC+AGG + chr5.4:2365682-2365701 MS.gene001055:CDS 55.0%
!! GGCCTTCAAAGGCACTTTCC+TGG + chr5.4:2365675-2365694 MS.gene001055:CDS 55.0%
CGAGGCGTGGAAACCCATTG+TGG + chr5.4:2364830-2364849 MS.gene001055:CDS 60.0%
CGGAATTCACACCGCCCAGA+CGG + chr5.4:2365095-2365114 MS.gene001055:CDS 60.0%
CTCATCGGCACAAGGCTGTG+AGG - chr5.4:2365652-2365671 None:intergenic 60.0%
GGAGGTTACGACCGACAGGA+TGG + chr5.4:2365703-2365722 MS.gene001055:CDS 60.0%
TGCAGGAGGTTACGACCGAC+AGG + chr5.4:2365699-2365718 MS.gene001055:CDS 60.0%
! AGAGCAGCCGGTTCTAACGG+AGG + chr5.4:2364723-2364742 MS.gene001055:CDS 60.0%
GGCACTTTCCTGGCTGCAGG+AGG + chr5.4:2365685-2365704 MS.gene001055:CDS 65.0%
GGTCGTAACCTCCTGCAGCC+AGG - chr5.4:2365696-2365715 None:intergenic 65.0%
TCACACCGCCCAGACGGCTA+AGG + chr5.4:2365101-2365120 MS.gene001055:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 2364482 2365903 2364482 ID=MS.gene001055
chr5.4 mRNA 2364482 2365903 2364482 ID=MS.gene001055.t1;Parent=MS.gene001055
chr5.4 exon 2364482 2364558 2364482 ID=MS.gene001055.t1.exon1;Parent=MS.gene001055.t1
chr5.4 CDS 2364482 2364558 2364482 ID=cds.MS.gene001055.t1;Parent=MS.gene001055.t1
chr5.4 exon 2364644 2364921 2364644 ID=MS.gene001055.t1.exon2;Parent=MS.gene001055.t1
chr5.4 CDS 2364644 2364921 2364644 ID=cds.MS.gene001055.t1;Parent=MS.gene001055.t1
chr5.4 exon 2365011 2365187 2365011 ID=MS.gene001055.t1.exon3;Parent=MS.gene001055.t1
chr5.4 CDS 2365011 2365187 2365011 ID=cds.MS.gene001055.t1;Parent=MS.gene001055.t1
chr5.4 exon 2365320 2365903 2365320 ID=MS.gene001055.t1.exon4;Parent=MS.gene001055.t1
chr5.4 CDS 2365320 2365903 2365320 ID=cds.MS.gene001055.t1;Parent=MS.gene001055.t1
Gene Sequence

>MS.gene001055

ATGGCTGGTGTTGTTGAATCTGATCCAATTCCTCTTCTTACTCCTTACAAAATGGGAAAATTTAATCTAGCTCATAGGTATCTTAATTATCCTTTCATTTCATTCATCCTTCCATTGAATTTCAAAGTTATGTGTTACTGTAATTTACTCATTTCATTTCAGAGTTGTTTTGGCACCCCTCACAAGAAACAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCAGCCGGTTCTAACGGAGGTCTTCTCTTAACCGAAGCTACCGGTATATCTGACACCGCTCAAGGATATCCAGACACACCGGGTATTTGGACTAAAGAGCATGTCGAGGCGTGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTGATACTGGTACGTTCTGTTTCATCAAATTATCAATGTCAGATTTGAACTTCTTTGACGTTGATTGACCTACATCTATATGTTCTTTTCCCCAACAGTTTTTCAGCCGAATGGACAGGCACCGATATCTTCTACAGACAAGCCACTCACACCACAACTTCGAAGTAATGGTATTGATGTCGCGGAATTCACACCGCCCAGACGGCTAAGGATAGATGAAATTCCAAACATTGTCAATGACTTCAGACTTGCTGCAAGAAATGCTATTGAAGCTGGTAACGTTACTTAATATTTATATCTCTAAAATAAATAAAAAATGTTTTCCAGACATTGATATTTTTGTTGCTTTAGAGGGCACTAGGACATTTGACAATTCTGTAACATACTCATTGGGGTGCAAATTGCAGGATTTGATGGGGTTGAAATTCATGGGGCAAATGGCTACATACTTGAGCAATTCATGAAAGATCAAGTGAATGACAGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGGATTGTTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGTGCAGATAGAGTTGGAATTAGATTATCACCTTTTGCAGAATATGCAGAATGTGTAGACTCTAATCCCAGAGAATTGGGACTTTATATGGCTAATGCCCTCAATAAATATGGTATTCTTTACCTTCACGTGGTGGAACCGAGAATGAAAACTGTTAATGAAAGAATTGAATGCCCTCACAGCCTTGTGCCGATGAGAAAGGCCTTCAAAGGCACTTTCCTGGCTGCAGGAGGTTACGACCGACAGGATGGGATCAATGCCATAGTTGAAAACAGGACAGACCTTGTTGTTTATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCGAAGAGATTTGCACTTAATGCTCCTCTAAACAAGTACAACAGGGCGACATTCTACACTTCTGATCCAGTTATAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>MS.gene001055.t1

MAGVVESDPIPLLTPYKMGKFNLAHRVVLAPLTRNRSYGNVPQPHAILYYSQRAAGSNGGLLLTEATGISDTAQGYPDTPGIWTKEHVEAWKPIVDAVHAKGATFFCQIWHVGRVSDTVFQPNGQAPISSTDKPLTPQLRSNGIDVAEFTPPRRLRIDEIPNIVNDFRLAARNAIEAGFDGVEIHGANGYILEQFMKDQVNDRTDEYGGSLENRCRIVLEVVEAVANEIGADRVGIRLSPFAEYAECVDSNPRELGLYMANALNKYGILYLHVVEPRMKTVNERIECPHSLVPMRKAFKGTFLAAGGYDRQDGINAIVENRTDLVVYGRLFLANPDLPKRFALNAPLNKYNRATFYTSDPVIGYTDYPFLE