Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024832.t1 | XP_003610767.1 | 96.8 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 7.00E-213 | 749.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024832.t1 | B9FSC8 | 77.2 | 364 | 81 | 1 | 7 | 370 | 2 | 363 | 3.9e-172 | 605.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024832.t1 | G7K3S2 | 96.8 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 5.0e-213 | 749.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024832.t1 | MTR_5g006780 | 96.765 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 0.0 | 750 |
| MS.gene024832.t1 | MTR_5g006800 | 91.914 | 371 | 28 | 1 | 1 | 371 | 1 | 369 | 0.0 | 713 |
| MS.gene024832.t1 | MTR_5g006750 | 87.871 | 371 | 45 | 0 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| MS.gene024832.t1 | MTR_5g006670 | 86.104 | 367 | 43 | 3 | 5 | 371 | 1 | 359 | 0.0 | 650 |
| MS.gene024832.t1 | MTR_5g006740 | 82.561 | 367 | 62 | 1 | 5 | 371 | 1 | 365 | 0.0 | 644 |
| MS.gene024832.t1 | MTR_5g006710 | 83.562 | 365 | 52 | 2 | 7 | 371 | 7 | 363 | 0.0 | 635 |
| MS.gene024832.t1 | MTR_5g008040 | 80.270 | 370 | 71 | 1 | 1 | 370 | 3 | 370 | 0.0 | 627 |
| MS.gene024832.t1 | MTR_5g006740 | 78.474 | 367 | 60 | 2 | 5 | 371 | 1 | 348 | 0.0 | 596 |
| MS.gene024832.t1 | MTR_5g006720 | 73.087 | 379 | 62 | 3 | 4 | 371 | 3 | 352 | 0.0 | 556 |
| MS.gene024832.t1 | MTR_3g115600 | 69.231 | 364 | 106 | 2 | 8 | 371 | 6 | 363 | 0.0 | 531 |
| MS.gene024832.t1 | MTR_4g125470 | 53.083 | 373 | 158 | 5 | 12 | 370 | 19 | 388 | 9.03e-139 | 400 |
| MS.gene024832.t1 | MTR_5g006730 | 76.471 | 119 | 26 | 1 | 1 | 119 | 1 | 117 | 5.35e-59 | 187 |
| MS.gene024832.t1 | MTR_3g096570 | 73.494 | 83 | 18 | 2 | 173 | 254 | 3 | 82 | 4.14e-32 | 122 |
| MS.gene024832.t1 | MTR_3g096562 | 67.045 | 88 | 26 | 1 | 167 | 254 | 162 | 246 | 3.00e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024832.t1 | AT1G76690 | 76.280 | 371 | 86 | 1 | 1 | 371 | 3 | 371 | 0.0 | 602 |
| MS.gene024832.t1 | AT1G76680 | 76.860 | 363 | 82 | 1 | 9 | 371 | 9 | 369 | 0.0 | 594 |
| MS.gene024832.t1 | AT1G76680 | 71.907 | 388 | 82 | 2 | 9 | 371 | 9 | 394 | 0.0 | 580 |
| MS.gene024832.t1 | AT1G09400 | 68.675 | 332 | 96 | 2 | 18 | 349 | 1 | 324 | 5.53e-174 | 487 |
| MS.gene024832.t1 | AT1G09400 | 70.741 | 270 | 73 | 1 | 80 | 349 | 2 | 265 | 3.69e-144 | 409 |
| MS.gene024832.t1 | AT2G06050 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.53e-135 | 391 |
| MS.gene024832.t1 | AT2G06050 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.53e-135 | 391 |
| MS.gene024832.t1 | AT2G06050 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.53e-135 | 391 |
| MS.gene024832.t1 | AT1G17990 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 2.13e-134 | 385 |
| MS.gene024832.t1 | AT1G18020 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 2.13e-134 | 385 |
| MS.gene024832.t1 | AT1G17990 | 66.923 | 260 | 71 | 4 | 9 | 268 | 6 | 250 | 1.11e-125 | 362 |
Find 107 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTACTCCTTACAAAAT+TGG | 0.174707 | 5.4:+2388531 | MS.gene024832:CDS |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5.4:-2389845 | None:intergenic |
| GTTGGAAGAGTTTCTGATTC+TGG | 0.251518 | 5.4:+2388913 | MS.gene024832:CDS |
| TAACGAATTGGGACTTTATA+TGG | 0.259709 | 5.4:+2389598 | MS.gene024832:CDS |
| TACATTTCTGATCCAGTTCT+AGG | 0.288195 | 5.4:+2389908 | MS.gene024832:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5.4:+2388645 | MS.gene024832:intron |
| GTCAATGCCCTCAATAAATA+TGG | 0.304167 | 5.4:+2389620 | MS.gene024832:CDS |
| AAAGGCACTTTCATGGTTGC+AGG | 0.311740 | 5.4:+2389737 | MS.gene024832:CDS |
| CTCCTCTGAACAAGTATAAC+AGG | 0.317873 | 5.4:+2389876 | MS.gene024832:CDS |
| CTCATCGGCACAAGGCTGTC+GGG | 0.347385 | 5.4:-2389704 | None:intergenic |
| ATCCAGACACGCCAGGTATA+TGG | 0.350535 | 5.4:+2388806 | MS.gene024832:CDS |
| GTCCATATACCTGGCGTGTC+TGG | 0.353329 | 5.4:-2388808 | None:intergenic |
| TCAATGCCATAGCTGAAAAC+AGG | 0.384447 | 5.4:+2389783 | MS.gene024832:CDS |
| AGACTCCAACCCTAACGAAT+TGG | 0.384935 | 5.4:+2389586 | MS.gene024832:CDS |
| GGCCTTCAAAGGCACTTTCA+TGG | 0.385984 | 5.4:+2389730 | MS.gene024832:CDS |
| AAACCATTACTTCGAATTTG+TGG | 0.394649 | 5.4:-2389097 | None:intergenic |
| CCAGTTTCTTCATTCAAGAA+AGG | 0.397020 | 5.4:-2389945 | None:intergenic |
| TGGTATTCTTTACTGTCATA+TGG | 0.399133 | 5.4:+2389640 | MS.gene024832:CDS |
| ATATAAAGTCCCAATTCGTT+AGG | 0.406105 | 5.4:-2389596 | None:intergenic |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5.4:-2389854 | None:intergenic |
| GAGATAGGAGCTGATAAAGT+TGG | 0.416753 | 5.4:+2389524 | MS.gene024832:CDS |
| GACTCCAACCCTAACGAATT+GGG | 0.419325 | 5.4:+2389587 | MS.gene024832:CDS |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5.4:+2389478 | MS.gene024832:CDS |
| AGGGCAGACCTTGTTGTCTA+TGG | 0.429742 | 5.4:+2389803 | MS.gene024832:CDS |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5.4:-2389142 | None:intergenic |
| AACCATGAAAGTGCCTTTGA+AGG | 0.438354 | 5.4:-2389732 | None:intergenic |
| GCAAATTCGATCTATCTCAT+AGG | 0.439650 | 5.4:+2388553 | MS.gene024832:CDS |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5.4:-2389628 | None:intergenic |
| GTGCAAATTGCAGGATTTGA+TGG | 0.444981 | 5.4:+2389362 | MS.gene024832:intron |
| CAGTTTCTTCATTCAAGAAA+GGG | 0.456188 | 5.4:-2389944 | None:intergenic |
| CTAAAGAGCACGTCGAGGCT+TGG | 0.460997 | 5.4:+2388830 | MS.gene024832:CDS |
| GCATGAACAGCATCCACAAT+GGG | 0.464445 | 5.4:-2388856 | None:intergenic |
| GACTTATCTGTAGATGATAT+TGG | 0.464557 | 5.4:-2389067 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5.4:+2389443 | MS.gene024832:CDS |
| CATTCTGCATATTCTGCAAA+AGG | 0.473703 | 5.4:-2389560 | None:intergenic |
| TCTCATCGGCACAAGGCTGT+CGG | 0.479067 | 5.4:-2389705 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.479079 | 5.4:+2389377 | MS.gene024832:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5.4:-2389920 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.483228 | 5.4:-2388770 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.488883 | 5.4:+2389709 | MS.gene024832:CDS |
| GTTGAAATCCATGGGGCTCA+TGG | 0.498562 | 5.4:+2389386 | MS.gene024832:CDS |
| GATATTGGTGCCTGTCCATT+CGG | 0.502015 | 5.4:-2389052 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.4:-2388703 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.502113 | 5.4:+2389363 | MS.gene024832:intron |
| CAGAGAGCCACCGGCTCTAA+CGG | 0.506975 | 5.4:+2388733 | MS.gene024832:CDS |
| ACACCACAAATTCGAAGTAA+TGG | 0.507759 | 5.4:+2389094 | MS.gene024832:CDS |
| CTCACAAGACAAAGATCCTA+TGG | 0.508545 | 5.4:+2388673 | MS.gene024832:CDS |
| CGTAATCAAGTGAAAATGGC+TGG | 0.509462 | 5.4:+2388483 | None:intergenic |
| AAGAATACCATATTTATTGA+GGG | 0.515388 | 5.4:-2389627 | None:intergenic |
| ATGCCAAATCTGACAAAAGA+AGG | 0.517640 | 5.4:-2388890 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.518438 | 5.4:+2389509 | MS.gene024832:CDS |
| TCATCGGCACAAGGCTGTCG+GGG | 0.521557 | 5.4:-2389703 | None:intergenic |
| TATAAAGTCCCAATTCGTTA+GGG | 0.522588 | 5.4:-2389595 | None:intergenic |
| GTAAGGAGTAAGAAGAGGAA+TGG | 0.526420 | 5.4:-2388523 | None:intergenic |
| TGGCTCTCTGTGAATAATAG+AGG | 0.529112 | 5.4:-2388720 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5.4:+2389468 | MS.gene024832:CDS |
| TTGATGGGGTTGAAATCCAT+GGG | 0.529612 | 5.4:+2389378 | MS.gene024832:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.4:-2389412 | None:intergenic |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5.4:-2389472 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5.4:-2389139 | None:intergenic |
| AAGTCCCAATTCGTTAGGGT+TGG | 0.539732 | 5.4:-2389591 | None:intergenic |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5.4:+2389134 | MS.gene024832:CDS |
| ACTTGCTGCTAGAAATGCTA+TGG | 0.544349 | 5.4:+2389192 | MS.gene024832:CDS |
| GTGGATGCTGTTCATGCTAA+AGG | 0.544472 | 5.4:+2388862 | MS.gene024832:CDS |
| GCTAGAAATGCTATGGAAGC+TGG | 0.548470 | 5.4:+2389199 | MS.gene024832:CDS |
| CAAGGGTATCCAGACACGCC+AGG | 0.555989 | 5.4:+2388799 | MS.gene024832:CDS |
| GGTGTCTCTGACACCGCTCA+AGG | 0.561959 | 5.4:+2388781 | MS.gene024832:CDS |
| AGTTTATCAGCCGAATGGAC+AGG | 0.564367 | 5.4:+2389042 | MS.gene024832:intron |
| GAGAAGACCTCCGTTAGAGC+CGG | 0.566754 | 5.4:-2388743 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5.4:-2389719 | None:intergenic |
| GGAGGTTACGACCGACATGA+TGG | 0.569456 | 5.4:+2389758 | MS.gene024832:CDS |
| CTTCTCATAACCGAAGCTAC+CGG | 0.572746 | 5.4:+2388760 | MS.gene024832:CDS |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5.4:-2389712 | None:intergenic |
| TATTATTCACAGAGAGCCAC+CGG | 0.583608 | 5.4:+2388724 | MS.gene024832:CDS |
| TCAACAGTTTATCAGCCGAA+TGG | 0.583793 | 5.4:+2389037 | MS.gene024832:intron |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5.4:+2389719 | MS.gene024832:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.585344 | 5.4:-2388817 | None:intergenic |
| AGGTTGTGGAACGTTGCCAT+AGG | 0.592868 | 5.4:-2388689 | None:intergenic |
| GGCACTTTCATGGTTGCAGG+AGG | 0.593746 | 5.4:+2389740 | MS.gene024832:CDS |
| TTTGCAGAATATGCAGAATG+TGG | 0.598992 | 5.4:+2389563 | MS.gene024832:CDS |
| AAGACCTCCGTTAGAGCCGG+TGG | 0.607283 | 5.4:-2388740 | None:intergenic |
| GAGGTTACGACCGACATGAT+GGG | 0.607847 | 5.4:+2389759 | MS.gene024832:CDS |
| TAGGATCTTTGTCTTGTGAG+TGG | 0.610235 | 5.4:-2388670 | None:intergenic |
| AGTTTCTTCATTCAAGAAAG+GGG | 0.611551 | 5.4:-2389943 | None:intergenic |
| TCCCTGTTATACTTGTTCAG+AGG | 0.614414 | 5.4:-2389878 | None:intergenic |
| GTGTCTCTGACACCGCTCAA+GGG | 0.616121 | 5.4:+2388782 | MS.gene024832:CDS |
| CGAGGCTTGGAAACCCATTG+TGG | 0.618914 | 5.4:+2388843 | MS.gene024832:CDS |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5.4:-2389481 | None:intergenic |
| CAATGCCATAGCTGAAAACA+GGG | 0.621098 | 5.4:+2389784 | MS.gene024832:CDS |
| TATTCTTTACTGTCATATGG+TGG | 0.623581 | 5.4:+2389643 | MS.gene024832:CDS |
| GTAGGTAGCCATGAGCCCCA+TGG | 0.625089 | 5.4:-2389394 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5.4:-2389471 | None:intergenic |
| AGCATGAACAGCATCCACAA+TGG | 0.632785 | 5.4:-2388857 | None:intergenic |
| TTGAGCGGTGTCAGAGACAC+CGG | 0.633714 | 5.4:-2388779 | None:intergenic |
| GAACCAAGAATGAAAACTGT+TGG | 0.645257 | 5.4:+2389665 | MS.gene024832:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5.4:+2389446 | MS.gene024832:CDS |
| AGAGCCACCGGCTCTAACGG+AGG | 0.647688 | 5.4:+2388736 | MS.gene024832:CDS |
| TGGCATTGATCCCATCATGT+CGG | 0.655421 | 5.4:-2389769 | None:intergenic |
| GCAAATTGCAGGATTTGATG+GGG | 0.659323 | 5.4:+2389364 | MS.gene024832:intron |
| TCCTCTGAACAAGTATAACA+GGG | 0.662663 | 5.4:+2389877 | MS.gene024832:CDS |
| ACAAACGACCATAGACAACA+AGG | 0.681842 | 5.4:-2389811 | None:intergenic |
| TTGCAAAATTCACACCACCA+AGG | 0.704294 | 5.4:+2389125 | MS.gene024832:CDS |
| CGTGTCTGGATACCCTTGAG+CGG | 0.705121 | 5.4:-2388794 | None:intergenic |
| GAATAATAGAGGATAGCATG+AGG | 0.726209 | 5.4:-2388709 | None:intergenic |
| TGATGGGGTTGAAATCCATG+GGG | 0.726824 | 5.4:+2389379 | MS.gene024832:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.740755 | 5.4:+2389128 | MS.gene024832:CDS |
| ATGGACTAAAGAGCACGTCG+AGG | 0.748737 | 5.4:+2388825 | MS.gene024832:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTGAATAATTTTTTATTT+TGG | - | chr5.4:2389252-2389271 | None:intergenic | 10.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.4:2389631-2389650 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.4:2389630-2389649 | None:intergenic | 20.0% |
| !! | ATAAACTGTTGAAAATAACA+TGG | - | chr5.4:2389029-2389048 | None:intergenic | 20.0% |
| !! | TATGAACATATGTGTATAAT+AGG | - | chr5.4:2388967-2388986 | None:intergenic | 20.0% |
| !! | TTGAAAATAACATGGAAAAT+GGG | - | chr5.4:2389021-2389040 | None:intergenic | 20.0% |
| ! | GTTGAAAATAACATGGAAAA+TGG | - | chr5.4:2389022-2389041 | None:intergenic | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5.4:2388645-2388664 | MS.gene024832:intron | 25.0% |
| AAACCATTACTTCGAATTTG+TGG | - | chr5.4:2389100-2389119 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5.4:2389443-2389462 | MS.gene024832:CDS | 30.0% | |
| ATATAAAGTCCCAATTCGTT+AGG | - | chr5.4:2389599-2389618 | None:intergenic | 30.0% | |
| ATTATGCAACATACTAACTG+TGG | + | chr5.4:2389340-2389359 | MS.gene024832:intron | 30.0% | |
| CTTCTTACTCCTTACAAAAT+TGG | + | chr5.4:2388531-2388550 | MS.gene024832:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.4:2389415-2389434 | None:intergenic | 30.0% | |
| GACTTATCTGTAGATGATAT+TGG | - | chr5.4:2389070-2389089 | None:intergenic | 30.0% | |
| TAACGAATTGGGACTTTATA+TGG | + | chr5.4:2389598-2389617 | MS.gene024832:CDS | 30.0% | |
| TATAAAGTCCCAATTCGTTA+GGG | - | chr5.4:2389598-2389617 | None:intergenic | 30.0% | |
| TATTCTTTACTGTCATATGG+TGG | + | chr5.4:2389643-2389662 | MS.gene024832:CDS | 30.0% | |
| TGGTATTCTTTACTGTCATA+TGG | + | chr5.4:2389640-2389659 | MS.gene024832:CDS | 30.0% | |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5.4:2388531-2388550 | None:intergenic | 30.0% |
| ! | TCGAATTTGCCAATTTTGTA+AGG | - | chr5.4:2388543-2388562 | None:intergenic | 30.0% |
| !! | AGATCTTTTTGTTGCTTCAA+AGG | + | chr5.4:2389299-2389318 | MS.gene024832:intron | 30.0% |
| !! | GATCTTTTTGTTGCTTCAAA+GGG | + | chr5.4:2389300-2389319 | MS.gene024832:intron | 30.0% |
| ACACCACAAATTCGAAGTAA+TGG | + | chr5.4:2389094-2389113 | MS.gene024832:CDS | 35.0% | |
| ATGCCAAATCTGACAAAAGA+AGG | - | chr5.4:2388893-2388912 | None:intergenic | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5.4:2389563-2389582 | None:intergenic | 35.0% | |
| GAACCAAGAATGAAAACTGT+TGG | + | chr5.4:2389665-2389684 | MS.gene024832:CDS | 35.0% | |
| GAATAATAGAGGATAGCATG+AGG | - | chr5.4:2388712-2388731 | None:intergenic | 35.0% | |
| GCAAATTCGATCTATCTCAT+AGG | + | chr5.4:2388553-2388572 | MS.gene024832:CDS | 35.0% | |
| GTCAATGCCCTCAATAAATA+TGG | + | chr5.4:2389620-2389639 | MS.gene024832:CDS | 35.0% | |
| TACATTTCTGATCCAGTTCT+AGG | + | chr5.4:2389908-2389927 | MS.gene024832:CDS | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | chr5.4:2389923-2389942 | None:intergenic | 35.0% | |
| TCCTCTGAACAAGTATAACA+GGG | + | chr5.4:2389877-2389896 | MS.gene024832:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.4:2389363-2389382 | MS.gene024832:intron | 35.0% | |
| TTTGCAGAATATGCAGAATG+TGG | + | chr5.4:2389563-2389582 | MS.gene024832:CDS | 35.0% | |
| ! | CTACCTTCTTTTGTCAGATT+TGG | + | chr5.4:2388887-2388906 | MS.gene024832:CDS | 35.0% |
| ! | TCACCAACAGTTTTCATTCT+TGG | - | chr5.4:2389671-2389690 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr5.4:2388895-2388914 | MS.gene024832:CDS | 35.0% |
| ACAAACGACCATAGACAACA+AGG | - | chr5.4:2389814-2389833 | None:intergenic | 40.0% | |
| CAATGCCATAGCTGAAAACA+GGG | + | chr5.4:2389784-2389803 | MS.gene024832:CDS | 40.0% | |
| CTCACAAGACAAAGATCCTA+TGG | + | chr5.4:2388673-2388692 | MS.gene024832:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr5.4:2389876-2389895 | MS.gene024832:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.4:2389509-2389528 | MS.gene024832:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.4:2389446-2389465 | MS.gene024832:CDS | 40.0% | |
| GAGATAGGAGCTGATAAAGT+TGG | + | chr5.4:2389524-2389543 | MS.gene024832:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5.4:2389848-2389867 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.4:2389364-2389383 | MS.gene024832:intron | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | chr5.4:2389857-2389876 | None:intergenic | 40.0% | |
| GTAAGGAGTAAGAAGAGGAA+TGG | - | chr5.4:2388526-2388545 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.4:2389362-2389381 | MS.gene024832:intron | 40.0% | |
| GTTGGAAGAGTTTCTGATTC+TGG | + | chr5.4:2388913-2388932 | MS.gene024832:CDS | 40.0% | |
| TAGGATCTTTGTCTTGTGAG+TGG | - | chr5.4:2388673-2388692 | None:intergenic | 40.0% | |
| TATTATTCACAGAGAGCCAC+CGG | + | chr5.4:2388724-2388743 | MS.gene024832:CDS | 40.0% | |
| TCAACAGTTTATCAGCCGAA+TGG | + | chr5.4:2389037-2389056 | MS.gene024832:intron | 40.0% | |
| TCAATGCCATAGCTGAAAAC+AGG | + | chr5.4:2389783-2389802 | MS.gene024832:CDS | 40.0% | |
| TCCCTGTTATACTTGTTCAG+AGG | - | chr5.4:2389881-2389900 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.4:2388820-2388839 | None:intergenic | 40.0% | |
| TGGCTCTCTGTGAATAATAG+AGG | - | chr5.4:2388723-2388742 | None:intergenic | 40.0% | |
| TTGATGGGGTTGAAATCCAT+GGG | + | chr5.4:2389378-2389397 | MS.gene024832:CDS | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | chr5.4:2389125-2389144 | MS.gene024832:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.4:2389377-2389396 | MS.gene024832:CDS | 40.0% | |
| ! | ACTTGCTGCTAGAAATGCTA+TGG | + | chr5.4:2389192-2389211 | MS.gene024832:CDS | 40.0% |
| !! | AACCATGAAAGTGCCTTTGA+AGG | - | chr5.4:2389735-2389754 | None:intergenic | 40.0% |
| AAACCGACAACGGTTCTCAA+GGG | - | chr5.4:2389474-2389493 | None:intergenic | 45.0% | |
| AAGTCCCAATTCGTTAGGGT+TGG | - | chr5.4:2389594-2389613 | None:intergenic | 45.0% | |
| AGACTCCAACCCTAACGAAT+TGG | + | chr5.4:2389586-2389605 | MS.gene024832:CDS | 45.0% | |
| AGCATGAACAGCATCCACAA+TGG | - | chr5.4:2388860-2388879 | None:intergenic | 45.0% | |
| AGTTTATCAGCCGAATGGAC+AGG | + | chr5.4:2389042-2389061 | MS.gene024832:intron | 45.0% | |
| CAAAATTCACACCACCAAGG+CGG | + | chr5.4:2389128-2389147 | MS.gene024832:CDS | 45.0% | |
| CTAACTGTGGTGCAAATTGC+AGG | + | chr5.4:2389353-2389372 | MS.gene024832:intron | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | chr5.4:2389484-2389503 | None:intergenic | 45.0% | |
| CTTCTCATAACCGAAGCTAC+CGG | + | chr5.4:2388760-2388779 | MS.gene024832:CDS | 45.0% | |
| GACTCCAACCCTAACGAATT+GGG | + | chr5.4:2389587-2389606 | MS.gene024832:CDS | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5.4:2388859-2388878 | None:intergenic | 45.0% | |
| GCTAGAAATGCTATGGAAGC+TGG | + | chr5.4:2389199-2389218 | MS.gene024832:CDS | 45.0% | |
| GTGGATGCTGTTCATGCTAA+AGG | + | chr5.4:2388862-2388881 | MS.gene024832:CDS | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.4:2388706-2388725 | None:intergenic | 45.0% | |
| TGATGGGGTTGAAATCCATG+GGG | + | chr5.4:2389379-2389398 | MS.gene024832:CDS | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5.4:2389722-2389741 | None:intergenic | 45.0% |
| ! | GATATTGGTGCCTGTCCATT+CGG | - | chr5.4:2389055-2389074 | None:intergenic | 45.0% |
| !! | AAAGGCACTTTCATGGTTGC+AGG | + | chr5.4:2389737-2389756 | MS.gene024832:CDS | 45.0% |
| !! | TGGCATTGATCCCATCATGT+CGG | - | chr5.4:2389772-2389791 | None:intergenic | 45.0% |
| !! | TTGTTGCTTCAAAGGGCACT+AGG | + | chr5.4:2389307-2389326 | MS.gene024832:intron | 45.0% |
| AGGTTGTGGAACGTTGCCAT+AGG | - | chr5.4:2388692-2388711 | None:intergenic | 50.0% | |
| ATCCAGACACGCCAGGTATA+TGG | + | chr5.4:2388806-2388825 | MS.gene024832:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | chr5.4:2389475-2389494 | None:intergenic | 50.0% | |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5.4:2389719-2389738 | MS.gene024832:CDS | 50.0% | |
| GAGGTTACGACCGACATGAT+GGG | + | chr5.4:2389759-2389778 | MS.gene024832:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.4:2389468-2389487 | MS.gene024832:CDS | 50.0% | |
| GTTGAAATCCATGGGGCTCA+TGG | + | chr5.4:2389386-2389405 | MS.gene024832:CDS | 50.0% | |
| ! | AGGGCAGACCTTGTTGTCTA+TGG | + | chr5.4:2389803-2389822 | MS.gene024832:CDS | 50.0% |
| ! | ATGGACTAAAGAGCACGTCG+AGG | + | chr5.4:2388825-2388844 | MS.gene024832:CDS | 50.0% |
| ! | GTCTGCCCTGTTTTCAGCTA+TGG | - | chr5.4:2389792-2389811 | None:intergenic | 50.0% |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | chr5.4:2389478-2389497 | MS.gene024832:CDS | 50.0% |
| !! | GGCCTTCAAAGGCACTTTCA+TGG | + | chr5.4:2389730-2389749 | MS.gene024832:CDS | 50.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5.4:2389715-2389734 | None:intergenic | 55.0% | |
| CGAGGCTTGGAAACCCATTG+TGG | + | chr5.4:2388843-2388862 | MS.gene024832:CDS | 55.0% | |
| CGTGTCTGGATACCCTTGAG+CGG | - | chr5.4:2388797-2388816 | None:intergenic | 55.0% | |
| GAGAAGACCTCCGTTAGAGC+CGG | - | chr5.4:2388746-2388765 | None:intergenic | 55.0% | |
| GGAGGTTACGACCGACATGA+TGG | + | chr5.4:2389758-2389777 | MS.gene024832:CDS | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5.4:2389740-2389759 | MS.gene024832:CDS | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | chr5.4:2388773-2388792 | None:intergenic | 55.0% | |
| GTCCATATACCTGGCGTGTC+TGG | - | chr5.4:2388811-2388830 | None:intergenic | 55.0% | |
| GTGTCTCTGACACCGCTCAA+GGG | + | chr5.4:2388782-2388801 | MS.gene024832:CDS | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | chr5.4:2389145-2389164 | None:intergenic | 55.0% | |
| TCTCATCGGCACAAGGCTGT+CGG | - | chr5.4:2389708-2389727 | None:intergenic | 55.0% | |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5.4:2389709-2389728 | MS.gene024832:CDS | 55.0% |
| ! | CTAAAGAGCACGTCGAGGCT+TGG | + | chr5.4:2388830-2388849 | MS.gene024832:CDS | 55.0% |
| ! | TTGAGCGGTGTCAGAGACAC+CGG | - | chr5.4:2388782-2388801 | None:intergenic | 55.0% |
| AAGACCTCCGTTAGAGCCGG+TGG | - | chr5.4:2388743-2388762 | None:intergenic | 60.0% | |
| CTCATCGGCACAAGGCTGTC+GGG | - | chr5.4:2389707-2389726 | None:intergenic | 60.0% | |
| GGTGTCTCTGACACCGCTCA+AGG | + | chr5.4:2388781-2388800 | MS.gene024832:CDS | 60.0% | |
| GTAGGTAGCCATGAGCCCCA+TGG | - | chr5.4:2389397-2389416 | None:intergenic | 60.0% | |
| TCACACCACCAAGGCGGCTA+AGG | + | chr5.4:2389134-2389153 | MS.gene024832:CDS | 60.0% | |
| TCATCGGCACAAGGCTGTCG+GGG | - | chr5.4:2389706-2389725 | None:intergenic | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | chr5.4:2389142-2389161 | None:intergenic | 60.0% | |
| !! | CAAGGGTATCCAGACACGCC+AGG | + | chr5.4:2388799-2388818 | MS.gene024832:CDS | 60.0% |
| !! | CAGAGAGCCACCGGCTCTAA+CGG | + | chr5.4:2388733-2388752 | MS.gene024832:CDS | 60.0% |
| !! | AGAGCCACCGGCTCTAACGG+AGG | + | chr5.4:2388736-2388755 | MS.gene024832:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2388498 | 2389958 | 2388498 | ID=MS.gene024832 |
| chr5.4 | mRNA | 2388498 | 2389958 | 2388498 | ID=MS.gene024832.t1;Parent=MS.gene024832 |
| chr5.4 | exon | 2388498 | 2388574 | 2388498 | ID=MS.gene024832.t1.exon1;Parent=MS.gene024832.t1 |
| chr5.4 | CDS | 2388498 | 2388574 | 2388498 | ID=cds.MS.gene024832.t1;Parent=MS.gene024832.t1 |
| chr5.4 | exon | 2388657 | 2388934 | 2388657 | ID=MS.gene024832.t1.exon2;Parent=MS.gene024832.t1 |
| chr5.4 | CDS | 2388657 | 2388934 | 2388657 | ID=cds.MS.gene024832.t1;Parent=MS.gene024832.t1 |
| chr5.4 | exon | 2389044 | 2389220 | 2389044 | ID=MS.gene024832.t1.exon3;Parent=MS.gene024832.t1 |
| chr5.4 | CDS | 2389044 | 2389220 | 2389044 | ID=cds.MS.gene024832.t1;Parent=MS.gene024832.t1 |
| chr5.4 | exon | 2389375 | 2389958 | 2389375 | ID=MS.gene024832.t1.exon4;Parent=MS.gene024832.t1 |
| chr5.4 | CDS | 2389375 | 2389958 | 2389375 | ID=cds.MS.gene024832.t1;Parent=MS.gene024832.t1 |
| Gene Sequence |
| Protein sequence |
