AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21808

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21808.t1 MTR_5g006750 96.226 371 14 0 1 371 1 371 0.0 744
MS.gene21808.t1 MTR_5g006780 88.679 371 42 0 1 371 1 371 0.0 696
MS.gene21808.t1 MTR_5g006800 85.984 371 50 1 1 371 1 369 0.0 673
MS.gene21808.t1 MTR_5g006670 82.016 367 58 2 5 371 1 359 0.0 630
MS.gene21808.t1 MTR_5g006740 79.019 367 75 1 5 371 1 365 0.0 624
MS.gene21808.t1 MTR_5g008040 76.486 370 85 1 1 370 3 370 0.0 609
MS.gene21808.t1 MTR_5g006710 79.726 365 66 2 7 371 7 363 0.0 607
MS.gene21808.t1 MTR_5g006740 74.932 367 73 2 5 371 1 348 0.0 577
MS.gene21808.t1 MTR_5g006720 69.921 379 74 3 4 371 3 352 0.0 542
MS.gene21808.t1 MTR_3g115600 66.575 362 115 2 10 371 8 363 0.0 511
MS.gene21808.t1 MTR_4g125470 52.815 373 159 5 12 370 19 388 2.10e-139 402
MS.gene21808.t1 MTR_5g006730 74.167 120 29 1 1 120 1 118 2.21e-59 189
MS.gene21808.t1 MTR_3g096570 69.231 78 21 1 177 254 8 82 8.46e-28 110
MS.gene21808.t1 MTR_3g096562 61.364 88 31 1 167 254 162 246 1.33e-26 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21808.t1 AT1G76680 76.796 362 82 1 10 371 10 369 0.0 597
MS.gene21808.t1 AT1G76690 76.243 362 84 1 10 371 12 371 0.0 595
MS.gene21808.t1 AT1G76680 71.835 387 82 2 10 371 10 394 0.0 584
MS.gene21808.t1 AT1G09400 67.470 332 100 2 18 349 1 324 5.89e-171 479
MS.gene21808.t1 AT1G09400 69.630 270 76 1 80 349 2 265 5.06e-142 404
MS.gene21808.t1 AT2G06050 48.541 377 173 5 12 370 12 385 2.48e-130 379
MS.gene21808.t1 AT2G06050 48.541 377 173 5 12 370 12 385 2.48e-130 379
MS.gene21808.t1 AT2G06050 48.541 377 173 5 12 370 12 385 2.48e-130 379
MS.gene21808.t1 AT1G17990 67.568 259 77 3 10 268 7 258 6.23e-129 371
MS.gene21808.t1 AT1G18020 67.568 259 77 3 10 268 7 258 6.23e-129 371
MS.gene21808.t1 AT1G17990 64.865 259 76 4 10 268 7 250 9.19e-121 350

Find 104 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTACTCCTTACAAAA+TGG 0.186722 5.2:+1405834 MS.gene21808:CDS
CAGAGAATTGGGACTTTATA+TGG 0.218697 5.2:+1406918 MS.gene21808:CDS
AGGACAGACCTTGTTGTTTA+TGG 0.235193 5.2:+1407123 MS.gene21808:CDS
TACACTTCTGATCCAGTTAT+AGG 0.262265 5.2:+1407228 MS.gene21808:CDS
GCAAATCTCTTCGGCAAATC+TGG 0.277734 5.2:-1407165 None:intergenic
CTACATTCTTCTGTCAGATT+TGG 0.278155 5.2:+1406190 MS.gene21808:CDS
CTGAAGGCATTGACAATGTT+TGG 0.289191 5.2:-1406509 None:intergenic
GCTAATGCCCTCAATAAATA+TGG 0.309977 5.2:+1406940 MS.gene21808:CDS
GCCCTGTTGTACTTGTTTAG+AGG 0.312031 5.2:-1407198 None:intergenic
ATCCAGACACACCGGGTATA+TGG 0.322756 5.2:+1406109 MS.gene21808:CDS
TTCATCTATCCTTAGCCGTC+TGG 0.324142 5.2:-1406483 None:intergenic
GGCCTTCAAAGGCACTTTCC+TGG 0.328985 5.2:+1407050 MS.gene21808:CDS
TAAGGAGTAAGAAGAGGAAT+TGG 0.337433 5.2:-1405826 None:intergenic
CATATAAAGTCCCAATTCTC+TGG 0.343157 5.2:-1406917 None:intergenic
GAACCGTTGTCGGATTGTTT+TGG 0.358599 5.2:+1406798 MS.gene21808:CDS
GCATGAACTGCATCCACAAT+AGG 0.368274 5.2:-1406159 None:intergenic
AGACTCTAATCCCAGAGAAT+TGG 0.370356 5.2:+1406906 MS.gene21808:CDS
GTCCATATACCCGGTGTGTC+TGG 0.377270 5.2:-1406111 None:intergenic
GTGCAAATTGCAGGATTTGA+TGG 0.377428 5.2:+1406682 MS.gene21808:intron
CTCCTCTAAACAAGTACAAC+AGG 0.379642 5.2:+1407196 MS.gene21808:CDS
GACTCTAATCCCAGAGAATT+GGG 0.395099 5.2:+1406907 MS.gene21808:CDS
CTTCTTACTCCTTACAAAAT+GGG 0.401791 5.2:+1405835 MS.gene21808:CDS
TGGTTTCTTCATTCAAGAAA+AGG 0.408379 5.2:-1407264 None:intergenic
TAGTCAGTATAACCTATAAC+TGG 0.418621 5.2:-1407240 None:intergenic
TGCAAATTGCAGGATTTGAT+GGG 0.429144 5.2:+1406683 MS.gene21808:intron
ACAGAAGAATGTAGCACCTT+TGG 0.437106 5.2:-1406181 None:intergenic
GTTGAAATCCATGGGGCAAA+TGG 0.442608 5.2:+1406706 MS.gene21808:CDS
AAAGAATACCATATTTATTG+AGG 0.443514 5.2:-1406948 None:intergenic
GTAAATTCAATCTAGCTCAT+AGG 0.463963 5.2:+1405857 MS.gene21808:CDS
AAAGGCACTTTCCTGGCTGC+AGG 0.463990 5.2:+1407057 MS.gene21808:CDS
TCAATGCCATAGCTGAAAAC+AGG 0.465430 5.2:+1407103 MS.gene21808:CDS
GATATCGGTGCCTGTCCATT+CGG 0.469149 5.2:-1406392 None:intergenic
AATGACAGAACAGATGAATA+TGG 0.470052 5.2:+1406763 MS.gene21808:CDS
TCATCTATCCTTAGCCGTCT+GGG 0.477854 5.2:-1406482 None:intergenic
CATTCTGCATATTCTGCAAA+AGG 0.478830 5.2:-1406880 None:intergenic
TTTGATGGGGTTGAAATCCA+TGG 0.479079 5.2:+1406697 MS.gene21808:CDS
CAGCCTTGTGCCGATGAGAA+AGG 0.480638 5.2:+1407029 MS.gene21808:CDS
GAGAAGACCTCCGTTAGAAC+CGG 0.487068 5.2:-1406046 None:intergenic
AGCCAGGAAAGTGCCTTTGA+AGG 0.492316 5.2:-1407052 None:intergenic
CAATCCGACAACGGTTCTCA+AGG 0.497852 5.2:-1406792 None:intergenic
TAGAGGATAGCATGAGGTTG+TGG 0.502110 5.2:-1406006 None:intergenic
GGTTTCTTCATTCAAGAAAA+GGG 0.502963 5.2:-1407263 None:intergenic
GAGATAGGTGCAGATAGAGT+TGG 0.504106 5.2:+1406844 MS.gene21808:CDS
GTAGGATCTGTTTCTTGTGA+GGG 0.505510 5.2:-1405974 None:intergenic
TTCTGTCAGATTTGGCATGT+TGG 0.513208 5.2:+1406198 MS.gene21808:CDS
GCATTAAGTGCAAATCTCTT+CGG 0.516430 5.2:-1407174 None:intergenic
TTGAGCGGTGTCAGATATAC+CGG 0.517615 5.2:-1406082 None:intergenic
GTCAGATATACCGGTAGCTT+CGG 0.517815 5.2:-1406073 None:intergenic
GGTCGTAACCTCCTGCAGCC+AGG 0.519395 5.2:-1407068 None:intergenic
CTGCTCTCTGAGAGTAATAG+AGG 0.524441 5.2:-1406023 None:intergenic
TGCAGGAGGTTACGACCGAC+AGG 0.525125 5.2:+1407074 MS.gene21808:CDS
AAGAATACCATATTTATTGA+GGG 0.525355 5.2:-1406947 None:intergenic
GAAGCTGTTGCAAATGAGAT+AGG 0.526907 5.2:+1406829 MS.gene21808:CDS
CGTAGGATCTGTTTCTTGTG+AGG 0.527234 5.2:-1405975 None:intergenic
CAGAGAGCAGCCGGTTCTAA+CGG 0.528139 5.2:+1406036 MS.gene21808:CDS
GGCTTGTCTGTAGAAGATAT+CGG 0.532354 5.2:-1406407 None:intergenic
GCAAGAAATGCTATTGAAGC+TGG 0.534377 5.2:+1406539 MS.gene21808:CDS
TTGATGGGGTTGAAATCCAT+GGG 0.537048 5.2:+1406698 MS.gene21808:CDS
ATATAAAGTCCCAATTCTCT+GGG 0.547129 5.2:-1406916 None:intergenic
GATCCCTTGAGAACCGTTGT+CGG 0.547363 5.2:+1406788 MS.gene21808:CDS
GTATGTAGCCATTTGCCCCA+TGG 0.553382 5.2:-1406714 None:intergenic
ACACCACAACTTCGAAGTAA+TGG 0.557692 5.2:+1406434 MS.gene21808:CDS
TCACACCGCCCAGACGGCTA+AGG 0.560646 5.2:+1406474 MS.gene21808:CDS
CTGAAGAGCACGTCGAGGCG+TGG 0.561550 5.2:+1406133 MS.gene21808:CDS
TATTACTCTCAGAGAGCAGC+CGG 0.562746 5.2:+1406027 MS.gene21808:CDS
CCTTTGAAGGCCTTTCTCAT+CGG 0.568654 5.2:-1407039 None:intergenic
TCATCGGCACAAGGCTGTGA+GGG 0.571682 5.2:-1407023 None:intergenic
TTCTCGGTTCCACCACATGA+AGG 0.572785 5.2:-1406972 None:intergenic
AGGCCTTTCTCATCGGCACA+AGG 0.573077 5.2:-1407032 None:intergenic
ATTTCTTGCAGCAAGTCTGA+AGG 0.574666 5.2:-1406525 None:intergenic
TGGTATTCTTTACCTTCATG+TGG 0.575968 5.2:+1406960 MS.gene21808:CDS
CTTCTCTTAACCGAAGCTAC+CGG 0.577933 5.2:+1406063 MS.gene21808:CDS
ATACCATTACTTCGAAGTTG+TGG 0.579878 5.2:-1406437 None:intergenic
CCGATGAGAAAGGCCTTCAA+AGG 0.584601 5.2:+1407039 MS.gene21808:CDS
CTTCGAAGTTGTGGTGTGAG+TGG 0.589473 5.2:-1406428 None:intergenic
TATTCTTTACCTTCATGTGG+TGG 0.590213 5.2:+1406963 MS.gene21808:CDS
GGCACTTTCCTGGCTGCAGG+AGG 0.593619 5.2:+1407060 MS.gene21808:CDS
CTCATCGGCACAAGGCTGTG+AGG 0.596585 5.2:-1407024 None:intergenic
CTCACAAGAAACAGATCCTA+CGG 0.597427 5.2:+1405976 MS.gene21808:CDS
TGCTCTTCAGTCCATATACC+CGG 0.597509 5.2:-1406120 None:intergenic
CGAGGCGTGGAAACCTATTG+TGG 0.600843 5.2:+1406146 MS.gene21808:CDS
GGTATATCTGACACCGCTCA+AGG 0.602455 5.2:+1406084 MS.gene21808:CDS
CAAGGATATCCAGACACACC+GGG 0.603203 5.2:+1406102 MS.gene21808:CDS
TAGGATCTGTTTCTTGTGAG+GGG 0.607086 5.2:-1405973 None:intergenic
GGAGGTTACGACCGACAGGA+TGG 0.607400 5.2:+1407078 MS.gene21808:CDS
GCAAATTGCAGGATTTGATG+GGG 0.608055 5.2:+1406684 MS.gene21808:intron
CGGAATTCACACCGCCCAGA+CGG 0.612075 5.2:+1406468 MS.gene21808:CDS
GAGGTTACGACCGACAGGAT+GGG 0.619159 5.2:+1407079 MS.gene21808:CDS
TGGCATTGATCCCATCCTGT+CGG 0.623618 5.2:-1407089 None:intergenic
AATCCGACAACGGTTCTCAA+GGG 0.625686 5.2:-1406791 None:intergenic
AAGTAATGGTATTGATGTCG+CGG 0.637452 5.2:+1406448 MS.gene21808:CDS
GACAGAACAGATGAATATGG+TGG 0.647355 5.2:+1406766 MS.gene21808:CDS
TCAAGGATATCCAGACACAC+CGG 0.652106 5.2:+1406101 MS.gene21808:CDS
AGGTTGTGGAACATTGCCGT+AGG 0.656729 5.2:-1405992 None:intergenic
AGAGCAGCCGGTTCTAACGG+AGG 0.662133 5.2:+1406039 MS.gene21808:CDS
GTGGATGCAGTTCATGCCAA+AGG 0.676509 5.2:+1406165 MS.gene21808:CDS
CTTCCAAAACAATCCGACAA+CGG 0.685561 5.2:-1406801 None:intergenic
GAGTAATAGAGGATAGCATG+AGG 0.689366 5.2:-1406012 None:intergenic
TCCTCTAAACAAGTACAACA+GGG 0.691494 5.2:+1407197 MS.gene21808:CDS
ACAAACGACCATAAACAACA+AGG 0.713799 5.2:-1407131 None:intergenic
ATGGACTGAAGAGCACGTCG+AGG 0.720447 5.2:+1406128 MS.gene21808:CDS
TGATGGGGTTGAAATCCATG+GGG 0.734260 5.2:+1406699 MS.gene21808:CDS
TCTATCCTTAGCCGTCTGGG+CGG 0.735343 5.2:-1406479 None:intergenic
TGTGTCTGGATATCCTTGAG+CGG 0.747606 5.2:-1406097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATACCATATTTATTG+AGG - chr5.2:1406951-1406970 None:intergenic 20.0%
!! AAGAATACCATATTTATTGA+GGG - chr5.2:1406950-1406969 None:intergenic 20.0%
!!! AATCTGAACTTGATAATTTT+AGG - chr5.2:1406291-1406310 None:intergenic 20.0%
! AATTCTGTAACATACTCATT+GGG + chr5.2:1406659-1406678 MS.gene21808:intron 25.0%
! CACATAACTTAGAAATTCAA+TGG - chr5.2:1405911-1405930 None:intergenic 25.0%
! TAACTTAGAAATTCAATGGA+AGG - chr5.2:1405907-1405926 None:intergenic 25.0%
!! TCATTAACAGTTTTCATTCT+CGG - chr5.2:1406991-1407010 None:intergenic 25.0%
!! TTGAATTTACCCATTTTGTA+AGG - chr5.2:1405847-1405866 None:intergenic 25.0%
!!! GATATTTTTGTTGCTTTAGA+GGG + chr5.2:1406620-1406639 MS.gene21808:intron 25.0%
!!! TGATATTTTTGTTGCTTTAG+AGG + chr5.2:1406619-1406638 MS.gene21808:intron 25.0%
AATGACAGAACAGATGAATA+TGG + chr5.2:1406763-1406782 MS.gene21808:CDS 30.0%
ATATAAAGTCCCAATTCTCT+GGG - chr5.2:1406919-1406938 None:intergenic 30.0%
ATTCTGTAACATACTCATTG+GGG + chr5.2:1406660-1406679 MS.gene21808:intron 30.0%
CAATTCTGTAACATACTCAT+TGG + chr5.2:1406658-1406677 MS.gene21808:intron 30.0%
CTTCTTACTCCTTACAAAAT+GGG + chr5.2:1405835-1405854 MS.gene21808:CDS 30.0%
GCAACAAAAATATCAATGTC+TGG - chr5.2:1406614-1406633 None:intergenic 30.0%
TAGTCAGTATAACCTATAAC+TGG - chr5.2:1407243-1407262 None:intergenic 30.0%
TCTTCTTACTCCTTACAAAA+TGG + chr5.2:1405834-1405853 MS.gene21808:CDS 30.0%
! ATTTTGTAAGGAGTAAGAAG+AGG - chr5.2:1405835-1405854 None:intergenic 30.0%
! GTAAATTCAATCTAGCTCAT+AGG + chr5.2:1405857-1405876 MS.gene21808:CDS 30.0%
ACAAACGACCATAAACAACA+AGG - chr5.2:1407134-1407153 None:intergenic 35.0%
ATACCATTACTTCGAAGTTG+TGG - chr5.2:1406440-1406459 None:intergenic 35.0%
ATTCGGCTGAAAAACTGTTT+GGG - chr5.2:1406378-1406397 None:intergenic 35.0%
CAGAGAATTGGGACTTTATA+TGG + chr5.2:1406918-1406937 MS.gene21808:CDS 35.0%
CATATAAAGTCCCAATTCTC+TGG - chr5.2:1406920-1406939 None:intergenic 35.0%
CATTCTGCATATTCTGCAAA+AGG - chr5.2:1406883-1406902 None:intergenic 35.0%
CTACATTCTTCTGTCAGATT+TGG + chr5.2:1406190-1406209 MS.gene21808:CDS 35.0%
GCATTAAGTGCAAATCTCTT+CGG - chr5.2:1407177-1407196 None:intergenic 35.0%
GCTAATGCCCTCAATAAATA+TGG + chr5.2:1406940-1406959 MS.gene21808:CDS 35.0%
GGAAAAGAACATATAGATGC+AGG - chr5.2:1406357-1406376 None:intergenic 35.0%
TAAGGAGTAAGAAGAGGAAT+TGG - chr5.2:1405829-1405848 None:intergenic 35.0%
TACACTTCTGATCCAGTTAT+AGG + chr5.2:1407228-1407247 MS.gene21808:CDS 35.0%
TATTCTTTACCTTCATGTGG+TGG + chr5.2:1406963-1406982 MS.gene21808:CDS 35.0%
TCCTCTAAACAAGTACAACA+GGG + chr5.2:1407197-1407216 MS.gene21808:CDS 35.0%
TGCAAATTGCAGGATTTGAT+GGG + chr5.2:1406683-1406702 MS.gene21808:intron 35.0%
TGGTATTCTTTACCTTCATG+TGG + chr5.2:1406960-1406979 MS.gene21808:CDS 35.0%
!! AAGTAATGGTATTGATGTCG+CGG + chr5.2:1406448-1406467 MS.gene21808:CDS 35.0%
ACACCACAACTTCGAAGTAA+TGG + chr5.2:1406434-1406453 MS.gene21808:CDS 40.0%
ACAGAAGAATGTAGCACCTT+TGG - chr5.2:1406184-1406203 None:intergenic 40.0%
AGACTCTAATCCCAGAGAAT+TGG + chr5.2:1406906-1406925 MS.gene21808:CDS 40.0%
ATTTCTTGCAGCAAGTCTGA+AGG - chr5.2:1406528-1406547 None:intergenic 40.0%
CATTCGGCTGAAAAACTGTT+TGG - chr5.2:1406379-1406398 None:intergenic 40.0%
CTCACAAGAAACAGATCCTA+CGG + chr5.2:1405976-1405995 MS.gene21808:CDS 40.0%
CTCCTCTAAACAAGTACAAC+AGG + chr5.2:1407196-1407215 MS.gene21808:CDS 40.0%
CTTCCAAAACAATCCGACAA+CGG - chr5.2:1406804-1406823 None:intergenic 40.0%
GAAGCTGTTGCAAATGAGAT+AGG + chr5.2:1406829-1406848 MS.gene21808:CDS 40.0%
GACAGAACAGATGAATATGG+TGG + chr5.2:1406766-1406785 MS.gene21808:CDS 40.0%
GACTCTAATCCCAGAGAATT+GGG + chr5.2:1406907-1406926 MS.gene21808:CDS 40.0%
GAGTAATAGAGGATAGCATG+AGG - chr5.2:1406015-1406034 None:intergenic 40.0%
GCAAATTGCAGGATTTGATG+GGG + chr5.2:1406684-1406703 MS.gene21808:intron 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.2:1406539-1406558 MS.gene21808:CDS 40.0%
GGCTTGTCTGTAGAAGATAT+CGG - chr5.2:1406410-1406429 None:intergenic 40.0%
GTGCAAATTGCAGGATTTGA+TGG + chr5.2:1406682-1406701 MS.gene21808:intron 40.0%
TCAATGCCATAGCTGAAAAC+AGG + chr5.2:1407103-1407122 MS.gene21808:CDS 40.0%
TTCTGTCAGATTTGGCATGT+TGG + chr5.2:1406198-1406217 MS.gene21808:CDS 40.0%
TTGATGGGGTTGAAATCCAT+GGG + chr5.2:1406698-1406717 MS.gene21808:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.2:1406697-1406716 MS.gene21808:CDS 40.0%
! GTAGGATCTGTTTCTTGTGA+GGG - chr5.2:1405977-1405996 None:intergenic 40.0%
! TAGGATCTGTTTCTTGTGAG+GGG - chr5.2:1405976-1405995 None:intergenic 40.0%
!! AGGACAGACCTTGTTGTTTA+TGG + chr5.2:1407123-1407142 MS.gene21808:CDS 40.0%
!! CAAACAGTTTTTCAGCCGAA+TGG + chr5.2:1406377-1406396 MS.gene21808:intron 40.0%
!! CTGAAGGCATTGACAATGTT+TGG - chr5.2:1406512-1406531 None:intergenic 40.0%
AATCCGACAACGGTTCTCAA+GGG - chr5.2:1406794-1406813 None:intergenic 45.0%
CTTCTCTTAACCGAAGCTAC+CGG + chr5.2:1406063-1406082 MS.gene21808:CDS 45.0%
GAGATAGGTGCAGATAGAGT+TGG + chr5.2:1406844-1406863 MS.gene21808:CDS 45.0%
GCAAATCTCTTCGGCAAATC+TGG - chr5.2:1407168-1407187 None:intergenic 45.0%
GCATGAACTGCATCCACAAT+AGG - chr5.2:1406162-1406181 None:intergenic 45.0%
GCCCTGTTGTACTTGTTTAG+AGG - chr5.2:1407201-1407220 None:intergenic 45.0%
GTCAGATATACCGGTAGCTT+CGG - chr5.2:1406076-1406095 None:intergenic 45.0%
GTTGAAATCCATGGGGCAAA+TGG + chr5.2:1406706-1406725 MS.gene21808:CDS 45.0%
TAGAGGATAGCATGAGGTTG+TGG - chr5.2:1406009-1406028 None:intergenic 45.0%
TATTACTCTCAGAGAGCAGC+CGG + chr5.2:1406027-1406046 MS.gene21808:CDS 45.0%
TCAAGGATATCCAGACACAC+CGG + chr5.2:1406101-1406120 MS.gene21808:CDS 45.0%
TCATCTATCCTTAGCCGTCT+GGG - chr5.2:1406485-1406504 None:intergenic 45.0%
TGATGGGGTTGAAATCCATG+GGG + chr5.2:1406699-1406718 MS.gene21808:CDS 45.0%
TGCTCTTCAGTCCATATACC+CGG - chr5.2:1406123-1406142 None:intergenic 45.0%
TGTGTCTGGATATCCTTGAG+CGG - chr5.2:1406100-1406119 None:intergenic 45.0%
TTCATCTATCCTTAGCCGTC+TGG - chr5.2:1406486-1406505 None:intergenic 45.0%
! CCTTTGAAGGCCTTTCTCAT+CGG - chr5.2:1407042-1407061 None:intergenic 45.0%
! CGTAGGATCTGTTTCTTGTG+AGG - chr5.2:1405978-1405997 None:intergenic 45.0%
! CTGCTCTCTGAGAGTAATAG+AGG - chr5.2:1406026-1406045 None:intergenic 45.0%
! GAACCGTTGTCGGATTGTTT+TGG + chr5.2:1406798-1406817 MS.gene21808:CDS 45.0%
! GTCTGTCCTGTTTTCAGCTA+TGG - chr5.2:1407112-1407131 None:intergenic 45.0%
! TTGAGCGGTGTCAGATATAC+CGG - chr5.2:1406085-1406104 None:intergenic 45.0%
!! AGTTTTTCAGCCGAATGGAC+AGG + chr5.2:1406382-1406401 MS.gene21808:intron 45.0%
!! TTGTTGCTTTAGAGGGCACT+AGG + chr5.2:1406627-1406646 MS.gene21808:intron 45.0%
AGGTTGTGGAACATTGCCGT+AGG - chr5.2:1405995-1406014 None:intergenic 50.0%
ATCCAGACACACCGGGTATA+TGG + chr5.2:1406109-1406128 MS.gene21808:CDS 50.0%
CAAGGATATCCAGACACACC+GGG + chr5.2:1406102-1406121 MS.gene21808:CDS 50.0%
CAATCCGACAACGGTTCTCA+AGG - chr5.2:1406795-1406814 None:intergenic 50.0%
CCGATGAGAAAGGCCTTCAA+AGG + chr5.2:1407039-1407058 MS.gene21808:CDS 50.0%
CTCATTGGGGTGCAAATTGC+AGG + chr5.2:1406673-1406692 MS.gene21808:intron 50.0%
CTTCGAAGTTGTGGTGTGAG+TGG - chr5.2:1406431-1406450 None:intergenic 50.0%
GAGAAGACCTCCGTTAGAAC+CGG - chr5.2:1406049-1406068 None:intergenic 50.0%
GATCCCTTGAGAACCGTTGT+CGG + chr5.2:1406788-1406807 MS.gene21808:CDS 50.0%
GGTATATCTGACACCGCTCA+AGG + chr5.2:1406084-1406103 MS.gene21808:CDS 50.0%
GTATGTAGCCATTTGCCCCA+TGG - chr5.2:1406717-1406736 None:intergenic 50.0%
GTGGATGCAGTTCATGCCAA+AGG + chr5.2:1406165-1406184 MS.gene21808:CDS 50.0%
TTCTCGGTTCCACCACATGA+AGG - chr5.2:1406975-1406994 None:intergenic 50.0%
! GATATCGGTGCCTGTCCATT+CGG - chr5.2:1406395-1406414 None:intergenic 50.0%
!! AGCCAGGAAAGTGCCTTTGA+AGG - chr5.2:1407055-1407074 None:intergenic 50.0%
!! TGGCATTGATCCCATCCTGT+CGG - chr5.2:1407092-1407111 None:intergenic 50.0%
AGGCCTTTCTCATCGGCACA+AGG - chr5.2:1407035-1407054 None:intergenic 55.0%
CGAGGCGTGGAAACCTATTG+TGG + chr5.2:1406146-1406165 MS.gene21808:CDS 55.0%
GAGGTTACGACCGACAGGAT+GGG + chr5.2:1407079-1407098 MS.gene21808:CDS 55.0%
GTCCATATACCCGGTGTGTC+TGG - chr5.2:1406114-1406133 None:intergenic 55.0%
TCATCGGCACAAGGCTGTGA+GGG - chr5.2:1407026-1407045 None:intergenic 55.0%
TCTATCCTTAGCCGTCTGGG+CGG - chr5.2:1406482-1406501 None:intergenic 55.0%
! ATGGACTGAAGAGCACGTCG+AGG + chr5.2:1406128-1406147 MS.gene21808:CDS 55.0%
! CAGAGAGCAGCCGGTTCTAA+CGG + chr5.2:1406036-1406055 MS.gene21808:CDS 55.0%
! CAGCCTTGTGCCGATGAGAA+AGG + chr5.2:1407029-1407048 MS.gene21808:CDS 55.0%
!! AAAGGCACTTTCCTGGCTGC+AGG + chr5.2:1407057-1407076 MS.gene21808:CDS 55.0%
!! GGCCTTCAAAGGCACTTTCC+TGG + chr5.2:1407050-1407069 MS.gene21808:CDS 55.0%
CGGAATTCACACCGCCCAGA+CGG + chr5.2:1406468-1406487 MS.gene21808:CDS 60.0%
CTCATCGGCACAAGGCTGTG+AGG - chr5.2:1407027-1407046 None:intergenic 60.0%
GGAGGTTACGACCGACAGGA+TGG + chr5.2:1407078-1407097 MS.gene21808:CDS 60.0%
TGCAGGAGGTTACGACCGAC+AGG + chr5.2:1407074-1407093 MS.gene21808:CDS 60.0%
! AGAGCAGCCGGTTCTAACGG+AGG + chr5.2:1406039-1406058 MS.gene21808:CDS 60.0%
GGCACTTTCCTGGCTGCAGG+AGG + chr5.2:1407060-1407079 MS.gene21808:CDS 65.0%
GGTCGTAACCTCCTGCAGCC+AGG - chr5.2:1407071-1407090 None:intergenic 65.0%
TCACACCGCCCAGACGGCTA+AGG + chr5.2:1406474-1406493 MS.gene21808:CDS 65.0%
! CTGAAGAGCACGTCGAGGCG+TGG + chr5.2:1406133-1406152 MS.gene21808:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1405802 1407278 1405802 ID=MS.gene21808
chr5.2 mRNA 1405802 1407278 1405802 ID=MS.gene21808.t1;Parent=MS.gene21808
chr5.2 exon 1405802 1405878 1405802 ID=MS.gene21808.t1.exon1;Parent=MS.gene21808.t1
chr5.2 CDS 1405802 1405878 1405802 ID=cds.MS.gene21808.t1;Parent=MS.gene21808.t1
chr5.2 exon 1405960 1406237 1405960 ID=MS.gene21808.t1.exon2;Parent=MS.gene21808.t1
chr5.2 CDS 1405960 1406237 1405960 ID=cds.MS.gene21808.t1;Parent=MS.gene21808.t1
chr5.2 exon 1406384 1406560 1406384 ID=MS.gene21808.t1.exon3;Parent=MS.gene21808.t1
chr5.2 CDS 1406384 1406560 1406384 ID=cds.MS.gene21808.t1;Parent=MS.gene21808.t1
chr5.2 exon 1406695 1407278 1406695 ID=MS.gene21808.t1.exon4;Parent=MS.gene21808.t1
chr5.2 CDS 1406695 1407278 1406695 ID=cds.MS.gene21808.t1;Parent=MS.gene21808.t1
Gene Sequence

>MS.gene21808

ATGGCTGGTGTTGTTGAATCTGATCCAATTCCTCTTCTTACTCCTTACAAAATGGGTAAATTCAATCTAGCTCATAGGTATCTTAATTATCTTTTCATTCATCCTTCCATTGAATTTCTAAGTTATGTGTTAACTGTAATTTACTCATTTCATTTCAGAGTTGTTTTCGCACCCCTCACAAGAAACAGATCCTACGGCAATGTTCCACAACCTCATGCTATCCTCTATTACTCTCAGAGAGCAGCCGGTTCTAACGGAGGTCTTCTCTTAACCGAAGCTACCGGTATATCTGACACCGCTCAAGGATATCCAGACACACCGGGTATATGGACTGAAGAGCACGTCGAGGCGTGGAAACCTATTGTGGATGCAGTTCATGCCAAAGGTGCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTGATACTCGTACGTTCTGTTTCATCAAATTATCAAGTTTCTTTGCATGAAGATACGTGCCTAAAATTATCAAGTTCAGATTTGTTGAACTCTTTGTTGATTTGAACTTCTTTGATGTTGATTGACCTGCATCTATATGTTCTTTTCCCAAACAGTTTTTCAGCCGAATGGACAGGCACCGATATCTTCTACAGACAAGCCACTCACACCACAACTTCGAAGTAATGGTATTGATGTCGCGGAATTCACACCGCCCAGACGGCTAAGGATAGATGAAATTCCAAACATTGTCAATGCCTTCAGACTTGCTGCAAGAAATGCTATTGAAGCTGGTAACGTTACTTAATATTTATATCTCTAAAATAAAATAAAAAAATGTTTTCCAGACATTGATATTTTTGTTGCTTTAGAGGGCACTAGGACATTTTACAATTCTGTAACATACTCATTGGGGTGCAAATTGCAGGATTTGATGGGGTTGAAATCCATGGGGCAAATGGCTACATACTTGAGCAATTCATGAAAGATCAAGTGAATGACAGAACAGATGAATATGGTGGATCCCTTGAGAACCGTTGTCGGATTGTTTTGGAAGTTGTTGAAGCTGTTGCAAATGAGATAGGTGCAGATAGAGTTGGAATTAGATTATCACCTTTTGCAGAATATGCAGAATGTGTAGACTCTAATCCCAGAGAATTGGGACTTTATATGGCTAATGCCCTCAATAAATATGGTATTCTTTACCTTCATGTGGTGGAACCGAGAATGAAAACTGTTAATGAAAGAATTGAATGCCCTCACAGCCTTGTGCCGATGAGAAAGGCCTTCAAAGGCACTTTCCTGGCTGCAGGAGGTTACGACCGACAGGATGGGATCAATGCCATAGCTGAAAACAGGACAGACCTTGTTGTTTATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCGAAGAGATTTGCACTTAATGCTCCTCTAAACAAGTACAACAGGGCGACATTTTACACTTCTGATCCAGTTATAGGTTATACTGACTACCCTTTTCTTGAATGA
Protein sequence

>MS.gene21808.t1

MAGVVESDPIPLLTPYKMGKFNLAHRVVFAPLTRNRSYGNVPQPHAILYYSQRAAGSNGGLLLTEATGISDTAQGYPDTPGIWTEEHVEAWKPIVDAVHAKGATFFCQIWHVGRVSDTLFQPNGQAPISSTDKPLTPQLRSNGIDVAEFTPPRRLRIDEIPNIVNAFRLAARNAIEAGFDGVEIHGANGYILEQFMKDQVNDRTDEYGGSLENRCRIVLEVVEAVANEIGADRVGIRLSPFAEYAECVDSNPRELGLYMANALNKYGILYLHVVEPRMKTVNERIECPHSLVPMRKAFKGTFLAAGGYDRQDGINAIAENRTDLVVYGRLFLANPDLPKRFALNAPLNKYNRATFYTSDPVIGYTDYPFLE