Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28210.t1 | XP_024639103.1 | 92.4 | 357 | 27 | 0 | 7 | 363 | 3 | 359 | 3.80E-195 | 690.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28210.t1 | Q8LAH7 | 72.9 | 369 | 94 | 2 | 1 | 363 | 1 | 369 | 5.6e-163 | 575.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28210.t1 | G7K3R3 | 92.2 | 357 | 28 | 0 | 7 | 363 | 3 | 359 | 1.3e-194 | 688.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene28210 | 0.819626 | 1.05E-52 | -1.69E-46 |
| MS.gene050883 | MS.gene28210 | 0.822093 | 2.85E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene28210 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene053549 | MS.gene28210 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene053826 | MS.gene28210 | 0.804061 | 2.59E-49 | -1.69E-46 |
| MS.gene055549 | MS.gene28210 | 0.806731 | 7.13E-50 | -1.69E-46 |
| MS.gene055550 | MS.gene28210 | 0.811824 | 5.77E-51 | -1.69E-46 |
| MS.gene055551 | MS.gene28210 | 0.820246 | 7.59E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene28210 | 0.806946 | 6.42E-50 | -1.69E-46 |
| MS.gene056408 | MS.gene28210 | 0.836015 | 1.20E-56 | -1.69E-46 |
| MS.gene057014 | MS.gene28210 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene057956 | MS.gene28210 | 0.897033 | 2.08E-76 | -1.69E-46 |
| MS.gene058628 | MS.gene28210 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene058629 | MS.gene28210 | 0.806417 | 8.31E-50 | -1.69E-46 |
| MS.gene058630 | MS.gene28210 | 0.82585 | 3.74E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28210.t1 | MTR_5g006670 | 92.157 | 357 | 28 | 0 | 7 | 363 | 3 | 359 | 0.0 | 692 |
| MS.gene28210.t1 | MTR_5g006710 | 89.807 | 363 | 37 | 0 | 1 | 363 | 1 | 363 | 0.0 | 686 |
| MS.gene28210.t1 | MTR_5g006780 | 85.175 | 371 | 47 | 3 | 1 | 363 | 1 | 371 | 0.0 | 649 |
| MS.gene28210.t1 | MTR_5g006800 | 82.656 | 369 | 58 | 1 | 1 | 363 | 1 | 369 | 0.0 | 638 |
| MS.gene28210.t1 | MTR_5g006750 | 80.054 | 371 | 66 | 2 | 1 | 363 | 1 | 371 | 0.0 | 620 |
| MS.gene28210.t1 | MTR_5g006740 | 80.716 | 363 | 64 | 1 | 7 | 363 | 3 | 365 | 0.0 | 619 |
| MS.gene28210.t1 | MTR_5g008040 | 77.989 | 368 | 75 | 1 | 1 | 362 | 3 | 370 | 0.0 | 610 |
| MS.gene28210.t1 | MTR_5g006740 | 76.584 | 363 | 62 | 3 | 7 | 363 | 3 | 348 | 0.0 | 573 |
| MS.gene28210.t1 | MTR_3g115600 | 69.315 | 365 | 108 | 2 | 1 | 363 | 1 | 363 | 0.0 | 539 |
| MS.gene28210.t1 | MTR_5g006720 | 71.467 | 375 | 63 | 3 | 6 | 363 | 5 | 352 | 0.0 | 536 |
| MS.gene28210.t1 | MTR_4g125470 | 54.054 | 370 | 151 | 3 | 12 | 362 | 19 | 388 | 3.24e-144 | 414 |
| MS.gene28210.t1 | MTR_5g006730 | 78.448 | 116 | 25 | 0 | 1 | 116 | 1 | 116 | 5.54e-63 | 197 |
| MS.gene28210.t1 | MTR_3g096570 | 80.282 | 71 | 14 | 0 | 169 | 239 | 8 | 78 | 5.20e-32 | 121 |
| MS.gene28210.t1 | MTR_3g096562 | 70.370 | 81 | 24 | 0 | 159 | 239 | 162 | 242 | 4.17e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28210.t1 | AT1G76680 | 72.900 | 369 | 94 | 2 | 1 | 363 | 1 | 369 | 0.0 | 578 |
| MS.gene28210.t1 | AT1G76690 | 72.900 | 369 | 94 | 1 | 1 | 363 | 3 | 371 | 0.0 | 577 |
| MS.gene28210.t1 | AT1G76680 | 68.274 | 394 | 94 | 3 | 1 | 363 | 1 | 394 | 0.0 | 564 |
| MS.gene28210.t1 | AT1G09400 | 70.405 | 321 | 95 | 0 | 21 | 341 | 4 | 324 | 1.53e-180 | 503 |
| MS.gene28210.t1 | AT1G09400 | 71.212 | 264 | 76 | 0 | 78 | 341 | 2 | 265 | 5.92e-147 | 416 |
| MS.gene28210.t1 | AT2G06050 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 2.79e-140 | 404 |
| MS.gene28210.t1 | AT2G06050 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 2.79e-140 | 404 |
| MS.gene28210.t1 | AT2G06050 | 51.169 | 385 | 165 | 3 | 1 | 362 | 1 | 385 | 2.79e-140 | 404 |
| MS.gene28210.t1 | AT1G17990 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 1.93e-137 | 392 |
| MS.gene28210.t1 | AT1G18020 | 70.155 | 258 | 74 | 2 | 5 | 260 | 2 | 258 | 1.93e-137 | 392 |
| MS.gene28210.t1 | AT1G17990 | 67.054 | 258 | 74 | 3 | 5 | 260 | 2 | 250 | 9.61e-129 | 370 |
Find 87 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAACCTCTTTGGCAAATC+TGG | 0.210347 | 3.3:-17336699 | None:intergenic |
| AAATGCATTGGGACTTTATA+TGG | 0.214696 | 3.3:+17336452 | MS.gene28210:CDS |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3.3:+17336730 | MS.gene28210:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3.3:+17336657 | MS.gene28210:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3.3:-17336020 | None:intergenic |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3.3:-17336388 | None:intergenic |
| ATCCAGACAGCCCAGGTATA+TGG | 0.329383 | 3.3:+17335407 | MS.gene28210:CDS |
| GCATTAAGTGCAAACCTCTT+TGG | 0.332483 | 3.3:-17336708 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3.3:-17335347 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3.3:+17336584 | MS.gene28210:CDS |
| ATATAAAGTCCCAATGCATT+TGG | 0.354102 | 3.3:-17336450 | None:intergenic |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3.3:-17336558 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3.3:-17336732 | None:intergenic |
| CTTCTTACACCTTACAAGAT+AGG | 0.370674 | 3.3:+17335122 | MS.gene28210:CDS |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3.3:+17336590 | MS.gene28210:CDS |
| TTGAATTTGCCTATCTTGTA+AGG | 0.371737 | 3.3:-17335131 | None:intergenic |
| GTCCATATACCTGGGCTGTC+TGG | 0.372045 | 3.3:-17335409 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3.3:+17336637 | MS.gene28210:CDS |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3.3:+17336770 | MS.gene28210:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3.3:+17336762 | MS.gene28210:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3.3:+17336591 | MS.gene28210:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3.3:+17336731 | MS.gene28210:CDS |
| GAATCGTTGTCGATTTCCTT+TGG | 0.407517 | 3.3:+17336332 | MS.gene28210:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3.3:-17336482 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3.3:-17336573 | None:intergenic |
| TCATCTGTTCCAAGCCTTCT+CGG | 0.421421 | 3.3:-17335993 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3.3:-17335327 | None:intergenic |
| GCATGAACAGCATCTACAAC+AGG | 0.426710 | 3.3:-17335457 | None:intergenic |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3.3:+17336755 | MS.gene28210:CDS |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.430335 | 3.3:+17335984 | MS.gene28210:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3.3:+17336563 | MS.gene28210:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3.3:+17336363 | MS.gene28210:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.433596 | 3.3:+17335144 | MS.gene28210:CDS |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3.3:-17336414 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 3.3:-17335921 | None:intergenic |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 3.3:+17336441 | MS.gene28210:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 3.3:-17335418 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3.3:-17336481 | None:intergenic |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3.3:+17336378 | MS.gene28210:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3.3:-17335371 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3.3:+17335280 | MS.gene28210:CDS |
| CGAATCCAGATTTGCCAAAG+AGG | 0.491902 | 3.3:+17336694 | MS.gene28210:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.503272 | 3.3:-17335949 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3.3:+17335361 | MS.gene28210:CDS |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 3.3:+17336440 | MS.gene28210:CDS |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3.3:-17335113 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3.3:+17335323 | MS.gene28210:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3.3:-17336557 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3.3:+17336050 | MS.gene28210:CDS |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3.3:-17335114 | None:intergenic |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3.3:+17335334 | MS.gene28210:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3.3:-17336266 | None:intergenic |
| GTCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3.3:+17336240 | MS.gene28210:CDS |
| TTTGATGGTGTCGAAATCCA+TGG | 0.539312 | 3.3:+17336231 | MS.gene28210:CDS |
| GTAGATGCTGTTCATGCTAA+AGG | 0.548123 | 3.3:+17335463 | MS.gene28210:CDS |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3.3:-17335389 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3.3:+17336573 | MS.gene28210:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3.3:-17336566 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3.3:-17335310 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3.3:+17335382 | MS.gene28210:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3.3:-17336774 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3.3:+17336494 | MS.gene28210:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3.3:-17336048 | None:intergenic |
| GCTCTTTAGTCCATATACCT+GGG | 0.578858 | 3.3:-17335417 | None:intergenic |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3.3:+17335400 | MS.gene28210:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3.3:+17336594 | MS.gene28210:CDS |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 3.3:+17336297 | MS.gene28210:CDS |
| GACTTGTCGGAAGAAGATAT+CGG | 0.588451 | 3.3:-17335936 | None:intergenic |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3.3:-17336326 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3.3:-17336248 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3.3:+17336612 | MS.gene28210:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.607160 | 3.3:-17336348 | None:intergenic |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3.3:-17335277 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3.3:+17336613 | MS.gene28210:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.617684 | 3.3:-17335119 | None:intergenic |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3.3:+17336638 | MS.gene28210:CDS |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3.3:-17335296 | None:intergenic |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3.3:-17336325 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3.3:+17336417 | MS.gene28210:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3.3:+17335337 | MS.gene28210:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3.3:+17335431 | MS.gene28210:CDS |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3.3:+17335383 | MS.gene28210:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3.3:+17336497 | MS.gene28210:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 3.3:+17335426 | MS.gene28210:CDS |
| TCTGTTCCAAGCCTTCTCGG+TGG | 0.688154 | 3.3:-17335990 | None:intergenic |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3.3:-17335316 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 3.3:+17336300 | MS.gene28210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCTTCAAATTATATG+AGG | - | chr3.3:17335557-17335576 | None:intergenic | 15.0% |
| !! | GTAGTAATACTAAAAAATAA+CGG | - | chr3.3:17335794-17335813 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | + | chr3.3:17335562-17335581 | MS.gene28210:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr3.3:17335172-17335191 | None:intergenic | 15.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | - | chr3.3:17336485-17336504 | None:intergenic | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | - | chr3.3:17336484-17336503 | None:intergenic | 20.0% |
| !! | TTTAGTATTACTACTACTAA+GGG | + | chr3.3:17335800-17335819 | MS.gene28210:intron | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | - | chr3.3:17335788-17335807 | None:intergenic | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | - | chr3.3:17335787-17335806 | None:intergenic | 20.0% |
| !!! | TTTTAGTATTACTACTACTA+AGG | + | chr3.3:17335799-17335818 | MS.gene28210:intron | 20.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | - | chr3.3:17335898-17335917 | None:intergenic | 25.0% |
| ! | CAAAACTATCCAATCAATAT+TGG | - | chr3.3:17335720-17335739 | None:intergenic | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | - | chr3.3:17336391-17336410 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr3.3:17336731-17336750 | MS.gene28210:CDS | 25.0% |
| ! | TTAGTATTACTACTACTAAG+GGG | + | chr3.3:17335801-17335820 | MS.gene28210:intron | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | + | chr3.3:17335588-17335607 | MS.gene28210:intron | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | + | chr3.3:17336132-17336151 | MS.gene28210:intron | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | + | chr3.3:17335565-17335584 | MS.gene28210:intron | 25.0% |
| AAATGCATTGGGACTTTATA+TGG | + | chr3.3:17336452-17336471 | MS.gene28210:CDS | 30.0% | |
| AAATTCTTGAGCTTGAAATC+CGG | + | chr3.3:17335689-17335708 | MS.gene28210:intron | 30.0% | |
| AACATTCTACATTTCTGATC+CGG | + | chr3.3:17336755-17336774 | MS.gene28210:CDS | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | + | chr3.3:17336297-17336316 | MS.gene28210:CDS | 30.0% | |
| ACTATCCAATCAATATTGGA+CGG | - | chr3.3:17335716-17335735 | None:intergenic | 30.0% | |
| ATATAAAGTCCCAATGCATT+TGG | - | chr3.3:17336453-17336472 | None:intergenic | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr3.3:17336494-17336513 | MS.gene28210:CDS | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr3.3:17336730-17336749 | MS.gene28210:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr3.3:17336269-17336288 | None:intergenic | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | + | chr3.3:17336061-17336080 | MS.gene28210:intron | 30.0% | |
| TTGAATTTGCCTATCTTGTA+AGG | - | chr3.3:17335134-17335153 | None:intergenic | 30.0% | |
| ! | CTACATTCTTTTGTCAGATT+TGG | + | chr3.3:17335488-17335507 | MS.gene28210:CDS | 30.0% |
| ! | GATTGAAGCACATTTCATTT+TGG | - | chr3.3:17336103-17336122 | None:intergenic | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | + | chr3.3:17335514-17335533 | MS.gene28210:CDS | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr3.3:17336735-17336754 | None:intergenic | 30.0% |
| !! | AGGACTATCTGTTGATTTAA+AGG | + | chr3.3:17336152-17336171 | MS.gene28210:intron | 30.0% |
| !! | GGACTATCTGTTGATTTAAA+GGG | + | chr3.3:17336153-17336172 | MS.gene28210:intron | 30.0% |
| !! | TCAGAAGCTGATTTTATTCT+TGG | - | chr3.3:17336525-17336544 | None:intergenic | 30.0% |
| AAATCGACAACGATTCTCAA+GGG | - | chr3.3:17336328-17336347 | None:intergenic | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | chr3.3:17336440-17336459 | MS.gene28210:CDS | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | - | chr3.3:17336051-17336070 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | - | chr3.3:17335122-17335141 | None:intergenic | 35.0% | |
| ATTGTTGGATTTAGATGGTG+TGG | + | chr3.3:17335593-17335612 | MS.gene28210:intron | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | + | chr3.3:17336638-17336657 | MS.gene28210:CDS | 35.0% | |
| CTCAATTTGATGCAAATTGC+AGG | + | chr3.3:17336207-17336226 | MS.gene28210:intron | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | chr3.3:17335280-17335299 | MS.gene28210:CDS | 35.0% | |
| CTGAAGTCATTGACAATATC+AGG | - | chr3.3:17336023-17336042 | None:intergenic | 35.0% | |
| CTTCTTACACCTTACAAGAT+AGG | + | chr3.3:17335122-17335141 | MS.gene28210:CDS | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | - | chr3.3:17336417-17336436 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | + | chr3.3:17336363-17336382 | MS.gene28210:CDS | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | chr3.3:17336441-17336460 | MS.gene28210:CDS | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr3.3:17335144-17335163 | MS.gene28210:CDS | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | - | chr3.3:17335235-17335254 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | - | chr3.3:17335116-17335135 | None:intergenic | 35.0% | |
| TAGGATCTTATTCTAGTGAG+TGG | - | chr3.3:17335280-17335299 | None:intergenic | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | chr3.3:17335350-17335369 | None:intergenic | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr3.3:17336497-17336516 | MS.gene28210:CDS | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | + | chr3.3:17336637-17336656 | MS.gene28210:CDS | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | + | chr3.3:17335323-17335342 | MS.gene28210:CDS | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | + | chr3.3:17336417-17336436 | MS.gene28210:CDS | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr3.3:17335253-17335272 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr3.3:17335256-17335275 | None:intergenic | 35.0% |
| ! | GTGTCCATTTTATTCTCAAC+AGG | + | chr3.3:17335891-17335910 | MS.gene28210:intron | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | + | chr3.3:17335578-17335597 | MS.gene28210:intron | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr3.3:17335252-17335271 | MS.gene28210:intron | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr3.3:17335257-17335276 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr3.3:17335496-17335515 | MS.gene28210:CDS | 35.0% |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | + | chr3.3:17336216-17336235 | MS.gene28210:intron | 35.0% |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr3.3:17336351-17336370 | None:intergenic | 40.0% | |
| AGGGCAGATCTTGTAGTTTA+TGG | + | chr3.3:17336657-17336676 | MS.gene28210:CDS | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr3.3:17336573-17336592 | MS.gene28210:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr3.3:17336576-17336595 | None:intergenic | 40.0% | |
| GAAATCGACAACGATTCTCA+AGG | - | chr3.3:17336329-17336348 | None:intergenic | 40.0% | |
| GACTTGTCGGAAGAAGATAT+CGG | - | chr3.3:17335939-17335958 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | - | chr3.3:17335319-17335338 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr3.3:17336050-17336069 | MS.gene28210:CDS | 40.0% | |
| GCATTAAGTGCAAACCTCTT+TGG | - | chr3.3:17336711-17336730 | None:intergenic | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | chr3.3:17335420-17335439 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | - | chr3.3:17335117-17335136 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGCTAA+AGG | + | chr3.3:17335463-17335482 | MS.gene28210:CDS | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | + | chr3.3:17336762-17336781 | MS.gene28210:CDS | 40.0% | |
| TACTCTCAAAGGTCCTCTAA+AGG | + | chr3.3:17335334-17335353 | MS.gene28210:CDS | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | - | chr3.3:17336777-17336796 | None:intergenic | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | + | chr3.3:17336770-17336789 | MS.gene28210:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr3.3:17335421-17335440 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | chr3.3:17335330-17335349 | None:intergenic | 40.0% |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr3.3:17335426-17335445 | MS.gene28210:CDS | 40.0% |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | - | chr3.3:17335952-17335971 | None:intergenic | 40.0% |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | chr3.3:17336332-17336351 | MS.gene28210:CDS | 40.0% |
| !! | TTTGATGGTGTCGAAATCCA+TGG | + | chr3.3:17336231-17336250 | MS.gene28210:CDS | 40.0% |
| AAAAATTCTCGCCACCGAGA+AGG | + | chr3.3:17335979-17335998 | MS.gene28210:CDS | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | - | chr3.3:17336569-17336588 | None:intergenic | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | + | chr3.3:17336591-17336610 | MS.gene28210:CDS | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | + | chr3.3:17336590-17336609 | MS.gene28210:CDS | 45.0% | |
| CCAATCAATATTGGACGGTC+CGG | - | chr3.3:17335711-17335730 | None:intergenic | 45.0% | |
| CGAATCCAGATTTGCCAAAG+AGG | + | chr3.3:17336694-17336713 | MS.gene28210:CDS | 45.0% | |
| CTAGACAACCGATCTTGATG+TGG | - | chr3.3:17335638-17335657 | None:intergenic | 45.0% | |
| CTTCTTATAGCCGAAGCTAC+TGG | + | chr3.3:17335361-17335380 | MS.gene28210:CDS | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | + | chr3.3:17336300-17336319 | MS.gene28210:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | + | chr3.3:17336378-17336397 | MS.gene28210:CDS | 45.0% | |
| GCAAACCTCTTTGGCAAATC+TGG | - | chr3.3:17336702-17336721 | None:intergenic | 45.0% | |
| GCAGTCAACCACATCAAGAT+CGG | + | chr3.3:17335627-17335646 | MS.gene28210:intron | 45.0% | |
| GCATGAACAGCATCTACAAC+AGG | - | chr3.3:17335460-17335479 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | chr3.3:17336584-17336603 | MS.gene28210:CDS | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | - | chr3.3:17335313-17335332 | None:intergenic | 45.0% | |
| TCATCTGTTCCAAGCCTTCT+CGG | - | chr3.3:17335996-17336015 | None:intergenic | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | - | chr3.3:17336560-17336579 | None:intergenic | 45.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | - | chr3.3:17335299-17335318 | None:intergenic | 45.0% | |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | chr3.3:17335924-17335943 | None:intergenic | 45.0% |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | + | chr3.3:17335906-17335925 | MS.gene28210:intron | 45.0% |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | chr3.3:17335337-17335356 | MS.gene28210:CDS | 45.0% |
| ATCCAGACAGCCCAGGTATA+TGG | + | chr3.3:17335407-17335426 | MS.gene28210:CDS | 50.0% | |
| CCGGACCGTCCAATATTGAT+TGG | + | chr3.3:17335708-17335727 | MS.gene28210:intron | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | - | chr3.3:17336561-17336580 | None:intergenic | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | + | chr3.3:17336613-17336632 | MS.gene28210:CDS | 50.0% | |
| GGAGGCTATGACAGACAAGA+CGG | + | chr3.3:17336612-17336631 | MS.gene28210:CDS | 50.0% | |
| GTCGAAATCCATGGAGCTCA+TGG | + | chr3.3:17336240-17336259 | MS.gene28210:CDS | 50.0% | |
| GTCGGATACACCAGTAGCTT+CGG | - | chr3.3:17335374-17335393 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | + | chr3.3:17335383-17335402 | MS.gene28210:CDS | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | - | chr3.3:17335392-17335411 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | + | chr3.3:17336563-17336582 | MS.gene28210:CDS | 50.0% |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | + | chr3.3:17335431-17335450 | MS.gene28210:CDS | 50.0% |
| GGTGTATCCGACACAGCTCA+AGG | + | chr3.3:17335382-17335401 | MS.gene28210:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr3.3:17336251-17336270 | None:intergenic | 55.0% | |
| GTCCATATACCTGGGCTGTC+TGG | - | chr3.3:17335412-17335431 | None:intergenic | 55.0% | |
| TCTGTTCCAAGCCTTCTCGG+TGG | - | chr3.3:17335993-17336012 | None:intergenic | 55.0% | |
| GGCACTTTCATGGTTGCGGG+AGG | + | chr3.3:17336594-17336613 | MS.gene28210:CDS | 60.0% | |
| TTCTCGCCACCGAGAAGGCT+TGG | + | chr3.3:17335984-17336003 | MS.gene28210:CDS | 60.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | + | chr3.3:17335400-17335419 | MS.gene28210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17335089 | 17336812 | 17335089 | ID=MS.gene28210 |
| chr3.3 | mRNA | 17335089 | 17336812 | 17335089 | ID=MS.gene28210.t1;Parent=MS.gene28210 |
| chr3.3 | exon | 17335089 | 17335165 | 17335089 | ID=MS.gene28210.t1.exon1;Parent=MS.gene28210.t1 |
| chr3.3 | CDS | 17335089 | 17335165 | 17335089 | ID=cds.MS.gene28210.t1;Parent=MS.gene28210.t1 |
| chr3.3 | exon | 17335264 | 17335535 | 17335264 | ID=MS.gene28210.t1.exon2;Parent=MS.gene28210.t1 |
| chr3.3 | CDS | 17335264 | 17335535 | 17335264 | ID=cds.MS.gene28210.t1;Parent=MS.gene28210.t1 |
| chr3.3 | exon | 17335913 | 17336071 | 17335913 | ID=MS.gene28210.t1.exon3;Parent=MS.gene28210.t1 |
| chr3.3 | CDS | 17335913 | 17336071 | 17335913 | ID=cds.MS.gene28210.t1;Parent=MS.gene28210.t1 |
| chr3.3 | exon | 17336229 | 17336812 | 17336229 | ID=MS.gene28210.t1.exon4;Parent=MS.gene28210.t1 |
| chr3.3 | CDS | 17336229 | 17336812 | 17336229 | ID=cds.MS.gene28210.t1;Parent=MS.gene28210.t1 |
| Gene Sequence |
| Protein sequence |
