Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024834.t1 | XP_003610764.1 | 97.7 | 345 | 8 | 0 | 12 | 356 | 27 | 371 | 1.20E-198 | 702.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024834.t1 | Q8LAH7 | 77.4 | 345 | 76 | 1 | 12 | 356 | 27 | 369 | 2.7e-162 | 572.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024834.t1 | B7FI39 | 97.7 | 345 | 8 | 0 | 12 | 356 | 27 | 371 | 8.9e-199 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024834.t1 | MTR_5g006750 | 97.681 | 345 | 8 | 0 | 12 | 356 | 27 | 371 | 0.0 | 701 |
| MS.gene024834.t1 | MTR_5g006780 | 89.565 | 345 | 36 | 0 | 12 | 356 | 27 | 371 | 0.0 | 653 |
| MS.gene024834.t1 | MTR_5g006800 | 87.246 | 345 | 42 | 1 | 12 | 356 | 27 | 369 | 0.0 | 634 |
| MS.gene024834.t1 | MTR_5g006670 | 83.188 | 345 | 50 | 2 | 12 | 356 | 23 | 359 | 0.0 | 598 |
| MS.gene024834.t1 | MTR_5g006740 | 80.000 | 345 | 67 | 1 | 12 | 356 | 23 | 365 | 0.0 | 592 |
| MS.gene024834.t1 | MTR_5g006710 | 80.580 | 345 | 59 | 2 | 12 | 356 | 27 | 363 | 0.0 | 578 |
| MS.gene024834.t1 | MTR_5g008040 | 77.035 | 344 | 77 | 1 | 12 | 355 | 29 | 370 | 0.0 | 571 |
| MS.gene024834.t1 | MTR_5g006740 | 75.942 | 345 | 64 | 2 | 12 | 356 | 23 | 348 | 0.0 | 545 |
| MS.gene024834.t1 | MTR_5g006720 | 70.506 | 356 | 65 | 3 | 12 | 356 | 26 | 352 | 0.0 | 509 |
| MS.gene024834.t1 | MTR_3g115600 | 66.377 | 345 | 110 | 2 | 12 | 356 | 25 | 363 | 1.68e-173 | 487 |
| MS.gene024834.t1 | MTR_4g125470 | 53.073 | 358 | 151 | 5 | 12 | 355 | 34 | 388 | 3.94e-132 | 383 |
| MS.gene024834.t1 | MTR_5g006730 | 76.596 | 94 | 20 | 1 | 12 | 105 | 27 | 118 | 1.44e-45 | 152 |
| MS.gene024834.t1 | MTR_3g096570 | 69.231 | 78 | 21 | 1 | 162 | 239 | 8 | 82 | 6.33e-28 | 110 |
| MS.gene024834.t1 | MTR_3g096562 | 61.364 | 88 | 31 | 1 | 152 | 239 | 162 | 246 | 8.74e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024834.t1 | AT1G76680 | 77.391 | 345 | 76 | 1 | 12 | 356 | 27 | 369 | 0.0 | 572 |
| MS.gene024834.t1 | AT1G76690 | 76.812 | 345 | 78 | 1 | 12 | 356 | 29 | 371 | 0.0 | 568 |
| MS.gene024834.t1 | AT1G76680 | 72.162 | 370 | 76 | 2 | 12 | 356 | 27 | 394 | 0.0 | 557 |
| MS.gene024834.t1 | AT1G09400 | 68.111 | 323 | 95 | 2 | 12 | 334 | 10 | 324 | 1.74e-168 | 473 |
| MS.gene024834.t1 | AT1G09400 | 70.370 | 270 | 74 | 1 | 65 | 334 | 2 | 265 | 3.69e-144 | 409 |
| MS.gene024834.t1 | AT2G06050 | 48.895 | 362 | 164 | 5 | 12 | 355 | 27 | 385 | 1.07e-123 | 361 |
| MS.gene024834.t1 | AT2G06050 | 48.895 | 362 | 164 | 5 | 12 | 355 | 27 | 385 | 1.07e-123 | 361 |
| MS.gene024834.t1 | AT2G06050 | 48.895 | 362 | 164 | 5 | 12 | 355 | 27 | 385 | 1.07e-123 | 361 |
| MS.gene024834.t1 | AT1G17990 | 65.098 | 255 | 80 | 4 | 1 | 253 | 11 | 258 | 2.83e-119 | 345 |
| MS.gene024834.t1 | AT1G18020 | 65.098 | 255 | 80 | 4 | 1 | 253 | 11 | 258 | 2.83e-119 | 345 |
| MS.gene024834.t1 | AT1G17990 | 64.113 | 248 | 79 | 4 | 9 | 253 | 10 | 250 | 1.18e-114 | 333 |
Find 102 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGAATTGGGACTTTATA+TGG | 0.218697 | 5.1:+1415355 | MS.gene024834:CDS |
| AGGACAGACCTTGTTGTTTA+TGG | 0.223479 | 5.1:+1415560 | MS.gene024834:CDS |
| ATCCAGACACACCGGGTATT+TGG | 0.230705 | 5.1:+1414597 | MS.gene024834:CDS |
| TACACTTCTGATCCAGTTAT+AGG | 0.260093 | 5.1:+1415665 | MS.gene024834:CDS |
| CTACATTCTTCTGTCAGATT+TGG | 0.278155 | 5.1:+1414678 | MS.gene024834:CDS |
| CTGAAGTCATTGACAATGTT+TGG | 0.290108 | 5.1:-1414948 | None:intergenic |
| ATTTCATTGCAGAGTTGTTT+TGG | 0.301380 | 5.1:+1414436 | MS.gene024834:intron |
| GCTAATGCCCTCAATAAATA+TGG | 0.309977 | 5.1:+1415377 | MS.gene024834:CDS |
| GCCCTGTTGTACTTGTTTAG+AGG | 0.312031 | 5.1:-1415635 | None:intergenic |
| TTCATCTATCCTTAGCCGTC+TGG | 0.324142 | 5.1:-1414922 | None:intergenic |
| GGCCTTCAAAGGCACTTTCC+TGG | 0.328985 | 5.1:+1415487 | MS.gene024834:CDS |
| CATATAAAGTCCCAATTCTC+TGG | 0.343157 | 5.1:-1415354 | None:intergenic |
| TCAATGCCATAGCTGAAAAT+AGG | 0.348967 | 5.1:+1415540 | MS.gene024834:CDS |
| TGCAAATCTCTTCGGCAAAT+CGG | 0.351681 | 5.1:-1415603 | None:intergenic |
| GAACCGTTGTCGGATTGTTT+TGG | 0.358599 | 5.1:+1415235 | MS.gene024834:CDS |
| TTTGATGGGGTTGAAATTCA+TGG | 0.366172 | 5.1:+1415134 | MS.gene024834:CDS |
| AGACTCTAATCCCAGAGAAT+TGG | 0.370356 | 5.1:+1415343 | MS.gene024834:CDS |
| GTGCAAATTGCAGGATTTGA+TGG | 0.377428 | 5.1:+1415119 | MS.gene024834:intron |
| CGGTTTCTTCATTCAAGAAA+AGG | 0.379016 | 5.1:-1415701 | None:intergenic |
| CTCCTCTAAACAAGTACAAC+AGG | 0.379642 | 5.1:+1415633 | MS.gene024834:CDS |
| GTCCAAATACCCGGTGTGTC+TGG | 0.387956 | 5.1:-1414599 | None:intergenic |
| GTTGGAAGAGTTTCTGATAC+TGG | 0.389203 | 5.1:+1414704 | MS.gene024834:CDS |
| GACTCTAATCCCAGAGAATT+GGG | 0.395099 | 5.1:+1415344 | MS.gene024834:CDS |
| GCAAATCTCTTCGGCAAATC+GGG | 0.410806 | 5.1:-1415602 | None:intergenic |
| TAGTCAGTATAACCTATAAC+TGG | 0.418621 | 5.1:-1415677 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.429144 | 5.1:+1415120 | MS.gene024834:intron |
| ACAGAAGAATGTAGCACCTT+TGG | 0.437106 | 5.1:-1414669 | None:intergenic |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5.1:-1415385 | None:intergenic |
| GTTGAAATTCATGGGGCAAA+TGG | 0.460599 | 5.1:+1415143 | MS.gene024834:CDS |
| AAAGGCACTTTCCTGGCTGC+AGG | 0.463990 | 5.1:+1415494 | MS.gene024834:CDS |
| GATATCGGTGCCTGTCCATT+CGG | 0.469149 | 5.1:-1414831 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5.1:+1415200 | MS.gene024834:CDS |
| TCATCTATCCTTAGCCGTCT+GGG | 0.477854 | 5.1:-1414921 | None:intergenic |
| CATTCTGCATATTCTGCAAA+AGG | 0.478830 | 5.1:-1415317 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.480638 | 5.1:+1415466 | MS.gene024834:CDS |
| GAGAAGACCTCCGTTAGAAC+CGG | 0.487068 | 5.1:-1414534 | None:intergenic |
| GCATGAACAGCATCCACAAT+GGG | 0.488648 | 5.1:-1414647 | None:intergenic |
| AGCCAGGAAAGTGCCTTTGA+AGG | 0.492316 | 5.1:-1415489 | None:intergenic |
| CAATCCGACAACGGTTCTCA+AGG | 0.497852 | 5.1:-1415229 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5.1:-1414494 | None:intergenic |
| GAGATAGGTGCAGATAGAGT+TGG | 0.504106 | 5.1:+1415281 | MS.gene024834:CDS |
| GTAGGATCTGTTTCTTGTGA+GGG | 0.505510 | 5.1:-1414462 | None:intergenic |
| GGTTTCTTCATTCAAGAAAA+GGG | 0.510979 | 5.1:-1415700 | None:intergenic |
| TTGATGGGGTTGAAATTCAT+GGG | 0.511805 | 5.1:+1415135 | MS.gene024834:CDS |
| TTCTGTCAGATTTGGCATGT+TGG | 0.513208 | 5.1:+1414686 | MS.gene024834:CDS |
| GCATTAAGTGCAAATCTCTT+CGG | 0.516430 | 5.1:-1415611 | None:intergenic |
| TTGAGCGGTGTCAGATATAC+CGG | 0.517615 | 5.1:-1414570 | None:intergenic |
| GTCAGATATACCGGTAGCTT+CGG | 0.517815 | 5.1:-1414561 | None:intergenic |
| GGTCGTAACCTCCTGCAGCC+AGG | 0.519395 | 5.1:-1415505 | None:intergenic |
| CTGCTCTCTGAGAGTAATAG+AGG | 0.524441 | 5.1:-1414511 | None:intergenic |
| TGCAGGAGGTTACGACCGAC+AGG | 0.525125 | 5.1:+1415511 | MS.gene024834:CDS |
| AAGAATACCATATTTATTGA+GGG | 0.525355 | 5.1:-1415384 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.526907 | 5.1:+1415266 | MS.gene024834:CDS |
| CGTAGGATCTGTTTCTTGTG+AGG | 0.527234 | 5.1:-1414463 | None:intergenic |
| CAGAGAGCAGCCGGTTCTAA+CGG | 0.528139 | 5.1:+1414524 | MS.gene024834:CDS |
| GGCTTGTCTGTAGAAGATAT+CGG | 0.532354 | 5.1:-1414846 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.1:+1414978 | MS.gene024834:CDS |
| ATATAAAGTCCCAATTCTCT+GGG | 0.547129 | 5.1:-1415353 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.547363 | 5.1:+1415225 | MS.gene024834:CDS |
| ACACCACAACTTCGAAGTAA+TGG | 0.557692 | 5.1:+1414873 | MS.gene024834:CDS |
| TCACACCGCCCAGACGGCTA+AGG | 0.560646 | 5.1:+1414913 | MS.gene024834:CDS |
| TATTACTCTCAGAGAGCAGC+CGG | 0.562746 | 5.1:+1414515 | MS.gene024834:CDS |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5.1:-1415476 | None:intergenic |
| TCATCGGCACAAGGCTGTGA+GGG | 0.571682 | 5.1:-1415460 | None:intergenic |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5.1:-1415469 | None:intergenic |
| CTTCTCTTAACCGAAGCTAC+CGG | 0.577933 | 5.1:+1414551 | MS.gene024834:CDS |
| ATACCATTACTTCGAAGTTG+TGG | 0.579878 | 5.1:-1414876 | None:intergenic |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5.1:+1415476 | MS.gene024834:CDS |
| CTTCGAAGTTGTGGTGTGAG+TGG | 0.589473 | 5.1:-1414867 | None:intergenic |
| GGCACTTTCCTGGCTGCAGG+AGG | 0.593619 | 5.1:+1415497 | MS.gene024834:CDS |
| CTCATCGGCACAAGGCTGTG+AGG | 0.596585 | 5.1:-1415461 | None:intergenic |
| CTCACAAGAAACAGATCCTA+CGG | 0.597427 | 5.1:+1414464 | MS.gene024834:CDS |
| GGTATATCTGACACCGCTCA+AGG | 0.602455 | 5.1:+1414572 | MS.gene024834:CDS |
| CAAGGATATCCAGACACACC+GGG | 0.603203 | 5.1:+1414590 | MS.gene024834:CDS |
| TAGGATCTGTTTCTTGTGAG+GGG | 0.607086 | 5.1:-1414461 | None:intergenic |
| GGAGGTTACGACCGACAGGA+TGG | 0.607400 | 5.1:+1415515 | MS.gene024834:CDS |
| GCAAATTGCAGGATTTGATG+GGG | 0.608055 | 5.1:+1415121 | MS.gene024834:intron |
| CTAAAGAGCATGTCGAGGCG+TGG | 0.609058 | 5.1:+1414621 | MS.gene024834:CDS |
| CGGAATTCACACCGCCCAGA+CGG | 0.612075 | 5.1:+1414907 | MS.gene024834:CDS |
| GTGGATGCTGTTCATGCCAA+AGG | 0.616714 | 5.1:+1414653 | MS.gene024834:CDS |
| TGCTCTTTAGTCCAAATACC+CGG | 0.617459 | 5.1:-1414608 | None:intergenic |
| GAGGTTACGACCGACAGGAT+GGG | 0.619159 | 5.1:+1415516 | MS.gene024834:CDS |
| TGGCATTGATCCCATCCTGT+CGG | 0.623618 | 5.1:-1415526 | None:intergenic |
| AATCCGACAACGGTTCTCAA+GGG | 0.625686 | 5.1:-1415228 | None:intergenic |
| GGCATGAACAGCATCCACAA+TGG | 0.625777 | 5.1:-1414648 | None:intergenic |
| TTCTCGGTTCCACCACGTGA+AGG | 0.628277 | 5.1:-1415409 | None:intergenic |
| TGATGGGGTTGAAATTCATG+GGG | 0.629040 | 5.1:+1415136 | MS.gene024834:CDS |
| AAGTAATGGTATTGATGTCG+CGG | 0.637452 | 5.1:+1414887 | MS.gene024834:CDS |
| TATTCTTTACCTTCACGTGG+TGG | 0.638200 | 5.1:+1415400 | MS.gene024834:CDS |
| TGGTATTCTTTACCTTCACG+TGG | 0.641993 | 5.1:+1415397 | MS.gene024834:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5.1:+1415203 | MS.gene024834:CDS |
| TCAAGGATATCCAGACACAC+CGG | 0.652106 | 5.1:+1414589 | MS.gene024834:CDS |
| AGGTTGTGGAACATTGCCGT+AGG | 0.656729 | 5.1:-1414480 | None:intergenic |
| AGAGCAGCCGGTTCTAACGG+AGG | 0.662133 | 5.1:+1414527 | MS.gene024834:CDS |
| CGAGGCGTGGAAACCCATTG+TGG | 0.669254 | 5.1:+1414634 | MS.gene024834:CDS |
| CTTCCAAAACAATCCGACAA+CGG | 0.685561 | 5.1:-1415238 | None:intergenic |
| GAGTAATAGAGGATAGCATG+AGG | 0.689366 | 5.1:-1414500 | None:intergenic |
| TCCTCTAAACAAGTACAACA+GGG | 0.691494 | 5.1:+1415634 | MS.gene024834:CDS |
| TTGGACTAAAGAGCATGTCG+AGG | 0.707515 | 5.1:+1414616 | MS.gene024834:CDS |
| ACAAACGACCATAAACAACA+AGG | 0.713799 | 5.1:-1415568 | None:intergenic |
| TCTATCCTTAGCCGTCTGGG+CGG | 0.735343 | 5.1:-1414918 | None:intergenic |
| TGTGTCTGGATATCCTTGAG+CGG | 0.747606 | 5.1:-1414585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAAGAAAAATGAAA+AGG | + | chr5.1:1413428-1413447 | MS.gene024834:intron | 10.0% |
| !!! | TAAGAGTATATATAAATATA+GGG | - | chr5.1:1413396-1413415 | None:intergenic | 10.0% |
| !!! | TTAAGAGTATATATAAATAT+AGG | - | chr5.1:1413397-1413416 | None:intergenic | 10.0% |
| !! | ATGATATCATTGTATATTTA+TGG | + | chr5.1:1413217-1413236 | MS.gene024834:intron | 15.0% |
| !! | ATTTATAATCAAGTGAAAAA+TGG | + | chr5.1:1414267-1414286 | MS.gene024834:intron | 15.0% |
| !! | TGATATCATTGTATATTTAT+GGG | + | chr5.1:1413218-1413237 | MS.gene024834:intron | 15.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.1:1415388-1415407 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.1:1415387-1415406 | None:intergenic | 20.0% |
| !! | AATGATTGTATCCAATAAAT+TGG | - | chr5.1:1413191-1413210 | None:intergenic | 20.0% |
| !! | ACTAAAATAGACATAGTTAT+AGG | - | chr5.1:1413718-1413737 | None:intergenic | 20.0% |
| !!! | TAAACAAACTGATTTATGTT+TGG | - | chr5.1:1413777-1413796 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCCCATTTTGTA+AGG | - | chr5.1:1414331-1414350 | None:intergenic | 20.0% |
| !!! | TTTTATAGTGAAACTAAAAG+TGG | - | chr5.1:1414217-1414236 | None:intergenic | 20.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | - | chr5.1:1413686-1413705 | None:intergenic | 25.0% |
| ! | AATTCTGTAACATACTCATT+GGG | + | chr5.1:1415096-1415115 | MS.gene024834:intron | 25.0% |
| ! | AGTAACTTCTACTCATATAA+TGG | - | chr5.1:1413996-1414015 | None:intergenic | 25.0% |
| ! | CAAAATTGATGTAGTCAAAT+TGG | + | chr5.1:1414073-1414092 | MS.gene024834:intron | 25.0% |
| ! | GTGTTAATAATAATTGTTGC+TGG | - | chr5.1:1414177-1414196 | None:intergenic | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | - | chr5.1:1413687-1413706 | None:intergenic | 25.0% |
| ! | TAACCAAATCATTATTTGTG+CGG | + | chr5.1:1413932-1413951 | MS.gene024834:intron | 25.0% |
| ! | TATAGGAGAATTGATAAAGA+AGG | - | chr5.1:1413701-1413720 | None:intergenic | 25.0% |
| !! | GAAAATTTAATCTAGCTCAT+AGG | + | chr5.1:1414341-1414360 | MS.gene024834:intron | 25.0% |
| !! | TCATTAACAGTTTTCATTCT+CGG | - | chr5.1:1415428-1415447 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr5.1:1413821-1413840 | None:intergenic | 25.0% |
| !!! | CACATAACTTTGAAATTCAA+TGG | - | chr5.1:1414400-1414419 | None:intergenic | 25.0% |
| !!! | GATATTTTTGTTGCTTTAGA+GGG | + | chr5.1:1415057-1415076 | MS.gene024834:intron | 25.0% |
| !!! | TAACTTTGAAATTCAATGGA+AGG | - | chr5.1:1414396-1414415 | None:intergenic | 25.0% |
| !!! | TGATATTTTTGTTGCTTTAG+AGG | + | chr5.1:1415056-1415075 | MS.gene024834:intron | 25.0% |
| AAACTAAAAGTGGAAAGTGA+TGG | - | chr5.1:1414207-1414226 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5.1:1415200-1415219 | MS.gene024834:CDS | 30.0% | |
| AATGTTGCTGATCATTGAAT+TGG | - | chr5.1:1414027-1414046 | None:intergenic | 30.0% | |
| ATAATCAAGTGAAAAATGGC+TGG | + | chr5.1:1414271-1414290 | MS.gene024834:intron | 30.0% | |
| ATATAAAGTCCCAATTCTCT+GGG | - | chr5.1:1415356-1415375 | None:intergenic | 30.0% | |
| ATTCTGTAACATACTCATTG+GGG | + | chr5.1:1415097-1415116 | MS.gene024834:intron | 30.0% | |
| ATTGTCCTTGTCATTACATA+TGG | + | chr5.1:1413291-1413310 | MS.gene024834:intron | 30.0% | |
| CAATTCTGTAACATACTCAT+TGG | + | chr5.1:1415095-1415114 | MS.gene024834:intron | 30.0% | |
| CTTCTTACTCCTTACAAAAT+GGG | + | chr5.1:1414319-1414338 | MS.gene024834:intron | 30.0% | |
| GAATTGATAAAGGGCAATAA+AGG | - | chr5.1:1413677-1413696 | None:intergenic | 30.0% | |
| GCAACAAAAATATCAATGTC+TGG | - | chr5.1:1415051-1415070 | None:intergenic | 30.0% | |
| GGAAAAGAACATATAGATGT+AGG | - | chr5.1:1414796-1414815 | None:intergenic | 30.0% | |
| GGGCAATAAAGGAAAATAAT+AGG | - | chr5.1:1413666-1413685 | None:intergenic | 30.0% | |
| TAATAATTGTTGCTGGTGAA+TGG | - | chr5.1:1414170-1414189 | None:intergenic | 30.0% | |
| TAGTCAGTATAACCTATAAC+TGG | - | chr5.1:1415680-1415699 | None:intergenic | 30.0% | |
| TCTTCTTACTCCTTACAAAA+TGG | + | chr5.1:1414318-1414337 | MS.gene024834:intron | 30.0% | |
| TTCTCTCTTACAAACAACAT+TGG | - | chr5.1:1414123-1414142 | None:intergenic | 30.0% | |
| TTGTCCTTGTCATTACATAT+GGG | + | chr5.1:1413292-1413311 | MS.gene024834:intron | 30.0% | |
| ! | ATTTCATTGCAGAGTTGTTT+TGG | + | chr5.1:1414436-1414455 | MS.gene024834:intron | 30.0% |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5.1:1414319-1414338 | None:intergenic | 30.0% |
| ! | GCACTGTTTATAATTGCTTT+TGG | - | chr5.1:1413489-1413508 | None:intergenic | 30.0% |
| ! | TTCTAGAAAAGCTAGAAGTT+AGG | - | chr5.1:1413604-1413623 | None:intergenic | 30.0% |
| ! | TTTTGCTCTCTCCAATTTAT+TGG | + | chr5.1:1413177-1413196 | MS.gene024834:intron | 30.0% |
| !!! | CAAACCAAACATGTTGTTTT+TGG | - | chr5.1:1413527-1413546 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr5.1:1413511-1413530 | None:intergenic | 30.0% |
| ACAAACGACCATAAACAACA+AGG | - | chr5.1:1415571-1415590 | None:intergenic | 35.0% | |
| AGTTAGGATTTGTAGCTTCA+TGG | - | chr5.1:1413588-1413607 | None:intergenic | 35.0% | |
| ATACCATTACTTCGAAGTTG+TGG | - | chr5.1:1414879-1414898 | None:intergenic | 35.0% | |
| ATTAAATCTGAGCCACACAT+TGG | - | chr5.1:1413292-1413273 | None:intergenic | 35.0% | |
| ATTCAGAGTTAGTGTGTGTT+TGG | - | chr5.1:1413913-1413932 | None:intergenic | 35.0% | |
| CAGAGAATTGGGACTTTATA+TGG | + | chr5.1:1415355-1415374 | MS.gene024834:CDS | 35.0% | |
| CATATAAAGTCCCAATTCTC+TGG | - | chr5.1:1415357-1415376 | None:intergenic | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5.1:1415320-1415339 | None:intergenic | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.1:1414678-1414697 | MS.gene024834:CDS | 35.0% | |
| CTAGCCAAAAACAACATGTT+TGG | + | chr5.1:1413520-1413539 | MS.gene024834:intron | 35.0% | |
| CTGAAGTCATTGACAATGTT+TGG | - | chr5.1:1414951-1414970 | None:intergenic | 35.0% | |
| CTTCAGTGACATTAATGTCA+CGG | + | chr5.1:1413246-1413265 | MS.gene024834:intron | 35.0% | |
| CTTGTGTGACATTAATGTCA+CGG | - | chr5.1:1413368-1413387 | None:intergenic | 35.0% | |
| GCATTAAGTGCAAATCTCTT+CGG | - | chr5.1:1415614-1415633 | None:intergenic | 35.0% | |
| GCTAATGCCCTCAATAAATA+TGG | + | chr5.1:1415377-1415396 | MS.gene024834:CDS | 35.0% | |
| GGAAGGATGAATGAAATGAA+AGG | - | chr5.1:1414379-1414398 | None:intergenic | 35.0% | |
| TAAGGAGTAAGAAGAGGAAT+TGG | - | chr5.1:1414313-1414332 | None:intergenic | 35.0% | |
| TACACTTCTGATCCAGTTAT+AGG | + | chr5.1:1415665-1415684 | MS.gene024834:CDS | 35.0% | |
| TCAATGCCATAGCTGAAAAT+AGG | + | chr5.1:1415540-1415559 | MS.gene024834:CDS | 35.0% | |
| TCACCGCACAAATAATGATT+TGG | - | chr5.1:1413938-1413957 | None:intergenic | 35.0% | |
| TCCTCTAAACAAGTACAACA+GGG | + | chr5.1:1415634-1415653 | MS.gene024834:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5.1:1415120-1415139 | MS.gene024834:intron | 35.0% | |
| TTAAATCTGAGCCACACATT+GGG | - | chr5.1:1413293-1413274 | None:intergenic | 35.0% | |
| TTGATGGGGTTGAAATTCAT+GGG | + | chr5.1:1415135-1415154 | MS.gene024834:CDS | 35.0% | |
| TTTGATGGGGTTGAAATTCA+TGG | + | chr5.1:1415134-1415153 | MS.gene024834:CDS | 35.0% | |
| ! | GCTTCATGGAAAATTGCTTT+TGG | - | chr5.1:1413574-1413593 | None:intergenic | 35.0% |
| !! | AAGTAATGGTATTGATGTCG+CGG | + | chr5.1:1414887-1414906 | MS.gene024834:CDS | 35.0% |
| !! | TCATGGAAAATTGCTTTTGG+AGG | - | chr5.1:1413571-1413590 | None:intergenic | 35.0% |
| AAGGATAGTAAGAGCCTCTT+TGG | + | chr5.1:1413447-1413466 | MS.gene024834:intron | 40.0% | |
| ACACCACAACTTCGAAGTAA+TGG | + | chr5.1:1414873-1414892 | MS.gene024834:CDS | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5.1:1414672-1414691 | None:intergenic | 40.0% | |
| AGACTCTAATCCCAGAGAAT+TGG | + | chr5.1:1415343-1415362 | MS.gene024834:CDS | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | + | chr5.1:1413326-1413345 | MS.gene024834:intron | 40.0% | |
| ATTCGGCTGAAAAACTGTTG+GGG | - | chr5.1:1414817-1414836 | None:intergenic | 40.0% | |
| CATTCGGCTGAAAAACTGTT+GGG | - | chr5.1:1414818-1414837 | None:intergenic | 40.0% | |
| CTAAAAGTGGAAAGTGATGG+CGG | - | chr5.1:1414204-1414223 | None:intergenic | 40.0% | |
| CTCACAAGAAACAGATCCTA+CGG | + | chr5.1:1414464-1414483 | MS.gene024834:CDS | 40.0% | |
| CTCCTCTAAACAAGTACAAC+AGG | + | chr5.1:1415633-1415652 | MS.gene024834:CDS | 40.0% | |
| CTTCCAAAACAATCCGACAA+CGG | - | chr5.1:1415241-1415260 | None:intergenic | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5.1:1415266-1415285 | MS.gene024834:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.1:1415203-1415222 | MS.gene024834:CDS | 40.0% | |
| GACTCTAATCCCAGAGAATT+GGG | + | chr5.1:1415344-1415363 | MS.gene024834:CDS | 40.0% | |
| GAGTAATAGAGGATAGCATG+AGG | - | chr5.1:1414503-1414522 | None:intergenic | 40.0% | |
| GATGTAGTCAAATTGGACTG+CGG | + | chr5.1:1414080-1414099 | MS.gene024834:intron | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5.1:1415121-1415140 | MS.gene024834:intron | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.1:1414978-1414997 | MS.gene024834:CDS | 40.0% | |
| GGCTTGTCTGTAGAAGATAT+CGG | - | chr5.1:1414849-1414868 | None:intergenic | 40.0% | |
| GTAATGACAAGGACAATGTG+TGG | - | chr5.1:1413288-1413307 | None:intergenic | 40.0% | |
| GTACGTTCTACTCTATACTG+CGG | + | chr5.1:1413123-1413142 | MS.gene024834:intron | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | - | chr5.1:1413318-1413337 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5.1:1415119-1415138 | MS.gene024834:intron | 40.0% | |
| GTTGAAATTCATGGGGCAAA+TGG | + | chr5.1:1415143-1415162 | MS.gene024834:CDS | 40.0% | |
| GTTGGAAGAGTTTCTGATAC+TGG | + | chr5.1:1414704-1414723 | MS.gene024834:CDS | 40.0% | |
| TATTCTTTACCTTCACGTGG+TGG | + | chr5.1:1415400-1415419 | MS.gene024834:CDS | 40.0% | |
| TGATGGGGTTGAAATTCATG+GGG | + | chr5.1:1415136-1415155 | MS.gene024834:CDS | 40.0% | |
| TGCAAATCTCTTCGGCAAAT+CGG | - | chr5.1:1415606-1415625 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCAAATACC+CGG | - | chr5.1:1414611-1414630 | None:intergenic | 40.0% | |
| TGGTATTCTTTACCTTCACG+TGG | + | chr5.1:1415397-1415416 | MS.gene024834:CDS | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.1:1414686-1414705 | MS.gene024834:CDS | 40.0% | |
| ! | GTAGGATCTGTTTCTTGTGA+GGG | - | chr5.1:1414465-1414484 | None:intergenic | 40.0% |
| ! | GTCTGTCCTATTTTCAGCTA+TGG | - | chr5.1:1415549-1415568 | None:intergenic | 40.0% |
| ! | TAGGATCTGTTTCTTGTGAG+GGG | - | chr5.1:1414464-1414483 | None:intergenic | 40.0% |
| !! | AGGACAGACCTTGTTGTTTA+TGG | + | chr5.1:1415560-1415579 | MS.gene024834:CDS | 40.0% |
| AACTTGACCCCCAACTGTTT+AGG | - | chr5.1:1413097-1413116 | None:intergenic | 45.0% | |
| AATCCGACAACGGTTCTCAA+GGG | - | chr5.1:1415231-1415250 | None:intergenic | 45.0% | |
| AGCCAAAAGCTGAACCAAAG+AGG | - | chr5.1:1413464-1413483 | None:intergenic | 45.0% | |
| CCATTCGGCTGAAAAACTGT+TGG | - | chr5.1:1414819-1414838 | None:intergenic | 45.0% | |
| CTTCTCTTAACCGAAGCTAC+CGG | + | chr5.1:1414551-1414570 | MS.gene024834:CDS | 45.0% | |
| GAGATAGGTGCAGATAGAGT+TGG | + | chr5.1:1415281-1415300 | MS.gene024834:CDS | 45.0% | |
| GCAAATCTCTTCGGCAAATC+GGG | - | chr5.1:1415605-1415624 | None:intergenic | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5.1:1414650-1414669 | None:intergenic | 45.0% | |
| GCCCTGTTGTACTTGTTTAG+AGG | - | chr5.1:1415638-1415657 | None:intergenic | 45.0% | |
| GTCAGATATACCGGTAGCTT+CGG | - | chr5.1:1414564-1414583 | None:intergenic | 45.0% | |
| GTGGCCCATATGTAATGACA+AGG | - | chr5.1:1413299-1413318 | None:intergenic | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5.1:1414497-1414516 | None:intergenic | 45.0% | |
| TATTACTCTCAGAGAGCAGC+CGG | + | chr5.1:1414515-1414534 | MS.gene024834:CDS | 45.0% | |
| TCAAGGATATCCAGACACAC+CGG | + | chr5.1:1414589-1414608 | MS.gene024834:CDS | 45.0% | |
| TCATCTATCCTTAGCCGTCT+GGG | - | chr5.1:1414924-1414943 | None:intergenic | 45.0% | |
| TGTGTCTGGATATCCTTGAG+CGG | - | chr5.1:1414588-1414607 | None:intergenic | 45.0% | |
| TTCATCTATCCTTAGCCGTC+TGG | - | chr5.1:1414925-1414944 | None:intergenic | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5.1:1415479-1415498 | None:intergenic | 45.0% |
| ! | CGTAGGATCTGTTTCTTGTG+AGG | - | chr5.1:1414466-1414485 | None:intergenic | 45.0% |
| ! | CTGCTCTCTGAGAGTAATAG+AGG | - | chr5.1:1414514-1414533 | None:intergenic | 45.0% |
| ! | GAACCGTTGTCGGATTGTTT+TGG | + | chr5.1:1415235-1415254 | MS.gene024834:CDS | 45.0% |
| ! | TTGAGCGGTGTCAGATATAC+CGG | - | chr5.1:1414573-1414592 | None:intergenic | 45.0% |
| ! | TTGGACTAAAGAGCATGTCG+AGG | + | chr5.1:1414616-1414635 | MS.gene024834:CDS | 45.0% |
| !! | AGCCTCTTTGGTTCAGCTTT+TGG | + | chr5.1:1413459-1413478 | MS.gene024834:intron | 45.0% |
| !! | AGTTTTTCAGCCGAATGGAC+AGG | + | chr5.1:1414821-1414840 | MS.gene024834:intron | 45.0% |
| !! | CCAACAGTTTTTCAGCCGAA+TGG | + | chr5.1:1414816-1414835 | MS.gene024834:intron | 45.0% |
| !! | TTGTTGCTTTAGAGGGCACT+AGG | + | chr5.1:1415064-1415083 | MS.gene024834:intron | 45.0% |
| !!! | TTTTCTTTATTTATTATTAA+AGG | - | chr5.1:1413422-1413441 | None:intergenic | 5.0% |
| AGGTTGTGGAACATTGCCGT+AGG | - | chr5.1:1414483-1414502 | None:intergenic | 50.0% | |
| AGTCAAATTGGACTGCGGTG+AGG | + | chr5.1:1414085-1414104 | MS.gene024834:intron | 50.0% | |
| ATCCAGACACACCGGGTATT+TGG | + | chr5.1:1414597-1414616 | MS.gene024834:CDS | 50.0% | |
| CAAGGATATCCAGACACACC+GGG | + | chr5.1:1414590-1414609 | MS.gene024834:CDS | 50.0% | |
| CAATCCGACAACGGTTCTCA+AGG | - | chr5.1:1415232-1415251 | None:intergenic | 50.0% | |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5.1:1415476-1415495 | MS.gene024834:CDS | 50.0% | |
| CGTTCTACTCTATACTGCGG+TGG | + | chr5.1:1413126-1413145 | MS.gene024834:intron | 50.0% | |
| CTCATTGGGGTGCAAATTGC+AGG | + | chr5.1:1415110-1415129 | MS.gene024834:intron | 50.0% | |
| CTTCGAAGTTGTGGTGTGAG+TGG | - | chr5.1:1414870-1414889 | None:intergenic | 50.0% | |
| GAGAAGACCTCCGTTAGAAC+CGG | - | chr5.1:1414537-1414556 | None:intergenic | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5.1:1415225-1415244 | MS.gene024834:CDS | 50.0% | |
| GGCATGAACAGCATCCACAA+TGG | - | chr5.1:1414651-1414670 | None:intergenic | 50.0% | |
| GGTATATCTGACACCGCTCA+AGG | + | chr5.1:1414572-1414591 | MS.gene024834:CDS | 50.0% | |
| GTCAAATTGGACTGCGGTGA+GGG | + | chr5.1:1414086-1414105 | MS.gene024834:intron | 50.0% | |
| GTGGATGCTGTTCATGCCAA+AGG | + | chr5.1:1414653-1414672 | MS.gene024834:CDS | 50.0% | |
| ! | GATATCGGTGCCTGTCCATT+CGG | - | chr5.1:1414834-1414853 | None:intergenic | 50.0% |
| !! | ACAGTTGGGGGTCAAGTTGA+TGG | + | chr5.1:1413099-1413118 | MS.gene024834:CDS | 50.0% |
| !! | AGCCAGGAAAGTGCCTTTGA+AGG | - | chr5.1:1415492-1415511 | None:intergenic | 50.0% |
| !! | TGGCATTGATCCCATCCTGT+CGG | - | chr5.1:1415529-1415548 | None:intergenic | 50.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5.1:1415472-1415491 | None:intergenic | 55.0% | |
| GAGGTTACGACCGACAGGAT+GGG | + | chr5.1:1415516-1415535 | MS.gene024834:CDS | 55.0% | |
| GTCCAAATACCCGGTGTGTC+TGG | - | chr5.1:1414602-1414621 | None:intergenic | 55.0% | |
| TCATCGGCACAAGGCTGTGA+GGG | - | chr5.1:1415463-1415482 | None:intergenic | 55.0% | |
| TCTATCCTTAGCCGTCTGGG+CGG | - | chr5.1:1414921-1414940 | None:intergenic | 55.0% | |
| TTCTCGGTTCCACCACGTGA+AGG | - | chr5.1:1415412-1415431 | None:intergenic | 55.0% | |
| ! | CAGAGAGCAGCCGGTTCTAA+CGG | + | chr5.1:1414524-1414543 | MS.gene024834:CDS | 55.0% |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5.1:1415466-1415485 | MS.gene024834:CDS | 55.0% |
| ! | CTAAAGAGCATGTCGAGGCG+TGG | + | chr5.1:1414621-1414640 | MS.gene024834:CDS | 55.0% |
| !! | AAAGGCACTTTCCTGGCTGC+AGG | + | chr5.1:1415494-1415513 | MS.gene024834:CDS | 55.0% |
| !! | GGCCTTCAAAGGCACTTTCC+TGG | + | chr5.1:1415487-1415506 | MS.gene024834:CDS | 55.0% |
| CGAGGCGTGGAAACCCATTG+TGG | + | chr5.1:1414634-1414653 | MS.gene024834:CDS | 60.0% | |
| CGGAATTCACACCGCCCAGA+CGG | + | chr5.1:1414907-1414926 | MS.gene024834:CDS | 60.0% | |
| CTCATCGGCACAAGGCTGTG+AGG | - | chr5.1:1415464-1415483 | None:intergenic | 60.0% | |
| GGAGGTTACGACCGACAGGA+TGG | + | chr5.1:1415515-1415534 | MS.gene024834:CDS | 60.0% | |
| TGCAGGAGGTTACGACCGAC+AGG | + | chr5.1:1415511-1415530 | MS.gene024834:CDS | 60.0% | |
| ! | AGAGCAGCCGGTTCTAACGG+AGG | + | chr5.1:1414527-1414546 | MS.gene024834:CDS | 60.0% |
| GGCACTTTCCTGGCTGCAGG+AGG | + | chr5.1:1415497-1415516 | MS.gene024834:CDS | 65.0% | |
| GGTCGTAACCTCCTGCAGCC+AGG | - | chr5.1:1415508-1415527 | None:intergenic | 65.0% | |
| TCACACCGCCCAGACGGCTA+AGG | + | chr5.1:1414913-1414932 | MS.gene024834:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1413091 | 1415715 | 1413091 | ID=MS.gene024834 |
| chr5.1 | mRNA | 1413091 | 1415715 | 1413091 | ID=MS.gene024834.t1;Parent=MS.gene024834 |
| chr5.1 | exon | 1413091 | 1413122 | 1413091 | ID=MS.gene024834.t1.exon1;Parent=MS.gene024834.t1 |
| chr5.1 | CDS | 1413091 | 1413122 | 1413091 | ID=cds.MS.gene024834.t1;Parent=MS.gene024834.t1 |
| chr5.1 | exon | 1414448 | 1414725 | 1414448 | ID=MS.gene024834.t1.exon2;Parent=MS.gene024834.t1 |
| chr5.1 | CDS | 1414448 | 1414725 | 1414448 | ID=cds.MS.gene024834.t1;Parent=MS.gene024834.t1 |
| chr5.1 | exon | 1414823 | 1414999 | 1414823 | ID=MS.gene024834.t1.exon3;Parent=MS.gene024834.t1 |
| chr5.1 | CDS | 1414823 | 1414999 | 1414823 | ID=cds.MS.gene024834.t1;Parent=MS.gene024834.t1 |
| chr5.1 | exon | 1415132 | 1415715 | 1415132 | ID=MS.gene024834.t1.exon4;Parent=MS.gene024834.t1 |
| chr5.1 | CDS | 1415132 | 1415715 | 1415132 | ID=cds.MS.gene024834.t1;Parent=MS.gene024834.t1 |
| Gene Sequence |
| Protein sequence |
