AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21810.t1 MTR_5g006710 94.766 363 19 0 5 367 1 363 0.0 721
MS.gene21810.t1 MTR_5g006670 88.764 356 40 0 12 367 4 359 0.0 664
MS.gene21810.t1 MTR_5g006800 84.282 369 52 1 5 367 1 369 0.0 641
MS.gene21810.t1 MTR_5g006780 83.827 371 52 2 5 367 1 371 0.0 633
MS.gene21810.t1 MTR_5g006740 79.834 362 67 1 12 367 4 365 0.0 608
MS.gene21810.t1 MTR_5g006750 79.515 371 68 2 5 367 1 371 0.0 606
MS.gene21810.t1 MTR_5g008040 77.297 370 78 1 3 366 1 370 0.0 603
MS.gene21810.t1 MTR_5g006740 76.243 362 63 2 12 367 4 348 0.0 564
MS.gene21810.t1 MTR_3g115600 71.067 356 101 1 14 367 8 363 0.0 533
MS.gene21810.t1 MTR_5g006720 71.200 375 64 3 10 367 5 352 0.0 531
MS.gene21810.t1 MTR_4g125470 53.243 370 154 3 16 366 19 388 1.16e-142 410
MS.gene21810.t1 MTR_5g006730 94.017 117 7 0 5 121 1 117 1.70e-77 235
MS.gene21810.t1 MTR_3g096570 76.056 71 17 0 173 243 8 78 1.27e-29 115
MS.gene21810.t1 MTR_3g096562 73.611 72 19 0 163 234 162 233 8.68e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21810.t1 AT1G76690 72.507 371 96 1 3 367 1 371 0.0 562
MS.gene21810.t1 AT1G76680 72.087 369 97 2 5 367 1 369 0.0 557
MS.gene21810.t1 AT1G76680 67.513 394 97 3 5 367 1 394 0.0 544
MS.gene21810.t1 AT1G09400 70.679 324 95 0 22 345 1 324 3.28e-178 498
MS.gene21810.t1 AT1G09400 72.348 264 73 0 82 345 2 265 7.67e-147 416
MS.gene21810.t1 AT2G06050 52.139 374 156 3 16 366 12 385 3.73e-141 406
MS.gene21810.t1 AT2G06050 52.139 374 156 3 16 366 12 385 3.73e-141 406
MS.gene21810.t1 AT2G06050 52.139 374 156 3 16 366 12 385 3.73e-141 406
MS.gene21810.t1 AT1G17990 71.937 253 68 2 14 264 7 258 1.51e-135 387
MS.gene21810.t1 AT1G18020 71.937 253 68 2 14 264 7 258 1.51e-135 387
MS.gene21810.t1 AT1G17990 68.775 253 68 3 14 264 7 250 7.97e-127 365

Find 82 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCAGACCTTGTTGTTTA+TGG 0.193124 5.2:+1389950 MS.gene21810:CDS
GCAAATCTCTTTGGCAAATC+TGG 0.196300 5.2:-1389992 None:intergenic
TATTTAAATGGGTATCAAAA+TGG 0.268737 5.2:+1388052 None:intergenic
CTGAAATCATTGACAATATC+AGG 0.274485 5.2:-1389313 None:intergenic
GCTGGAAGGGTTTCAAATTC+AGG 0.282625 5.2:+1388478 MS.gene21810:CDS
TCATCATTTCAGAGTTGTTT+TGG 0.287756 5.2:+1388216 MS.gene21810:intron
CTCCTCTCAATAAATATAAC+AGG 0.291526 5.2:+1390023 MS.gene21810:CDS
TATGATCTCATTCTTGTTAG+TGG 0.293944 5.2:-1388241 None:intergenic
ATCCAAACACGCCAGGTATA+TGG 0.299406 5.2:+1388371 MS.gene21810:CDS
AATGGTACTTTCATGGTTGC+AGG 0.322861 5.2:+1389884 MS.gene21810:CDS
GTCCATATACCTGGCGTGTT+TGG 0.338038 5.2:-1388373 None:intergenic
GGCTTTCAATGGTACTTTCA+TGG 0.340526 5.2:+1389877 MS.gene21810:CDS
GCATTAAGAGCAAATCTCTT+TGG 0.352480 5.2:-1390001 None:intergenic
CTCATTGGCACCAGACTGTA+AGG 0.356523 5.2:-1389851 None:intergenic
AAATGCATTGGGACTTCATA+TGG 0.358879 5.2:+1389745 MS.gene21810:CDS
TGATCCGGTGGTAGGTTATA+CGG 0.367077 5.2:+1390063 MS.gene21810:CDS
ATATGAAGTCCCAATGCATT+TGG 0.375541 5.2:-1389743 None:intergenic
TGACTTGTCTGTAGAAGATA+TGG 0.380599 5.2:-1389230 None:intergenic
TTATCTTTCATGAATTGTTC+AGG 0.388133 5.2:-1389563 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.388704 5.2:-1388113 None:intergenic
GAATCGCTGTCGATTTCCTT+TGG 0.396064 5.2:+1389625 MS.gene21810:CDS
GAGATAGGAGCAGATAAAGT+TGG 0.397834 5.2:+1389671 MS.gene21810:CDS
AATGACAGAACAGATGAATA+TGG 0.401093 5.2:+1389590 MS.gene21810:CDS
TAAGGTGTAAGTAGAGGAAT+TGG 0.401983 5.2:-1388095 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.422831 5.2:-1389866 None:intergenic
TTCTGTCAAATTTGGCATGC+TGG 0.423347 5.2:+1388460 MS.gene21810:CDS
CTTTCTGCATATTCTGCAAA+TGG 0.436481 5.2:-1389707 None:intergenic
GAAGCAGTTGCGAATGAGAT+AGG 0.444031 5.2:+1389656 MS.gene21810:CDS
GTCAAATTTGGCATGCTGGA+AGG 0.444257 5.2:+1388464 MS.gene21810:CDS
GATATGGGTGCTTGGCCATT+CGG 0.448964 5.2:-1389214 None:intergenic
GACTCTAATCCAAATGCATT+GGG 0.453689 5.2:+1389734 MS.gene21810:CDS
GACATTCTACATTTCTGATC+CGG 0.456348 5.2:+1390048 MS.gene21810:CDS
GCAAATTCAATCTAGCTCAT+AGG 0.460762 5.2:+1388126 MS.gene21810:CDS
TCAAATTTGGCATGCTGGAA+GGG 0.472329 5.2:+1388465 MS.gene21810:CDS
CTTCTCATAGCTGAAGCTAC+TGG 0.479639 5.2:+1388325 MS.gene21810:CDS
TCACGAAACCGAGACGACTA+AGG 0.488520 5.2:+1389278 MS.gene21810:CDS
TCATCTGTCCTTAGTCGTCT+CGG 0.489558 5.2:-1389286 None:intergenic
TCTACTTACACCTTACAAGA+TGG 0.493459 5.2:+1388103 MS.gene21810:CDS
CAGTCTGGTGCCAATGAGAA+AGG 0.498444 5.2:+1389856 MS.gene21810:CDS
TTTGATGGGGTTGAAATCCA+TGG 0.500651 5.2:+1389524 MS.gene21810:CDS
GTGGAACCAAGAATAAAATC+AGG 0.503178 5.2:+1389809 MS.gene21810:CDS
GAATAATACTTGATAGCAAT+GGG 0.505456 5.2:-1388280 None:intergenic
AGACTCTAATCCAAATGCAT+TGG 0.510548 5.2:+1389733 MS.gene21810:CDS
GATTGAAAGCCCTTACAGTC+TGG 0.513661 5.2:+1389841 MS.gene21810:CDS
TACTTGATAGCAATGGGTTG+AGG 0.515275 5.2:-1388274 None:intergenic
GGAGGCTATGACAGACAAGA+TGG 0.516327 5.2:+1389905 MS.gene21810:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.517901 5.2:+1389343 MS.gene21810:CDS
AGAATAATACTTGATAGCAA+TGG 0.520679 5.2:-1388281 None:intergenic
TATTCTCAGAGAACTTCTAA+AGG 0.526800 5.2:+1388298 MS.gene21810:CDS
GTTGAAATCCATGGAGCTCA+TGG 0.532007 5.2:+1389533 MS.gene21810:CDS
TCCCTGTTATATTTATTGAG+AGG 0.534017 5.2:-1390025 None:intergenic
CTGTAGAAGATATGGGTGCT+TGG 0.537907 5.2:-1389222 None:intergenic
TCATGAACCGCATCTACGAT+AGG 0.560519 5.2:-1388421 None:intergenic
CTACTTACACCTTACAAGAT+GGG 0.567851 5.2:+1388104 MS.gene21810:CDS
TGCTCTTTAGTCCATATACC+TGG 0.568111 5.2:-1388382 None:intergenic
CAAGGCTATCCAAACACGCC+AGG 0.568320 5.2:+1388364 MS.gene21810:CDS
CCAATGAGAAAGGCTTTCAA+TGG 0.571441 5.2:+1389866 MS.gene21810:CDS
CAATATTCTTTACTGTCACA+TGG 0.576936 5.2:+1389787 MS.gene21810:CDS
TACATTTCTGATCCGGTGGT+AGG 0.590489 5.2:+1390055 MS.gene21810:CDS
TAAATGGGTATCAAAATGGA+AGG 0.590505 5.2:+1388056 None:intergenic
GTAGGTAGCCATGAGCTCCA+TGG 0.595976 5.2:-1389541 None:intergenic
TCTCAGAGAACTTCTAAAGG+TGG 0.598844 5.2:+1388301 MS.gene21810:CDS
CTTTCATGAATTGTTCAGGT+AGG 0.601902 5.2:-1389559 None:intergenic
TCATTGGCACCAGACTGTAA+GGG 0.602205 5.2:-1389850 None:intergenic
ACTGCTTCAACAACTTCCAA+AGG 0.613321 5.2:-1389641 None:intergenic
GACTTGTCTGTAGAAGATAT+GGG 0.614044 5.2:-1389229 None:intergenic
ATTCTACATTTCTGATCCGG+TGG 0.614919 5.2:+1390051 MS.gene21810:CDS
GGTGTCTCAGACACTGCTCA+AGG 0.615730 5.2:+1388346 MS.gene21810:CDS
GAGGCTATGACAGACAAGAT+GGG 0.618192 5.2:+1389906 MS.gene21810:CDS
ATCTTGTAAGGTGTAAGTAG+AGG 0.620862 5.2:-1388101 None:intergenic
GGTACTTTCATGGTTGCAGG+AGG 0.622008 5.2:+1389887 MS.gene21810:CDS
GTAGATGCGGTTCATGACAA+AGG 0.633675 5.2:+1388427 MS.gene21810:CDS
TTTGCAGAATATGCAGAAAG+CGG 0.636317 5.2:+1389710 MS.gene21810:CDS
CTAAAGAGCAAGTTGAGGCG+TGG 0.641191 5.2:+1388395 MS.gene21810:CDS
TCCTCTCAATAAATATAACA+GGG 0.647614 5.2:+1390024 MS.gene21810:CDS
CTAACAGTTTATCAACCGAA+TGG 0.650365 5.2:+1389199 MS.gene21810:intron
GTGGAAACCTATCGTAGATG+CGG 0.678720 5.2:+1388414 MS.gene21810:CDS
TATTCTTTACTGTCACATGG+TGG 0.684787 5.2:+1389790 MS.gene21810:CDS
ATGGACTAAAGAGCAAGTTG+AGG 0.687634 5.2:+1388390 MS.gene21810:CDS
TAGTCCGTATAACCTACCAC+CGG 0.695454 5.2:-1390067 None:intergenic
ACAAACGACCATAAACAACA+AGG 0.713799 5.2:-1389958 None:intergenic
GATGCGGTTCATGACAAAGG+CGG 0.732511 5.2:+1388430 MS.gene21810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATTATTACTATCT+CGG + chr5.2:1389130-1389149 MS.gene21810:intron 10.0%
!!! CTAAATTTTATTTTTATCAA+AGG - chr5.2:1388755-1388774 None:intergenic 10.0%
!! ACAGTAAAATAAAATGATTT+GGG + chr5.2:1389095-1389114 MS.gene21810:intron 15.0%
!! TACAGTAAAATAAAATGATT+TGG + chr5.2:1389094-1389113 MS.gene21810:intron 15.0%
!! AAATAGAATAGAAAGTGAAA+TGG - chr5.2:1388165-1388184 None:intergenic 20.0%
!! TTTAGAAAAAATAACACACA+AGG - chr5.2:1388900-1388919 None:intergenic 20.0%
!!! GTATATTTTTCTGTCAAATT+TGG + chr5.2:1388452-1388471 MS.gene21810:CDS 20.0%
!!! TAAAATAAAATGATTTGGGT+TGG + chr5.2:1389099-1389118 MS.gene21810:intron 20.0%
! AGACATCAATCAAATTACTT+GGG + chr5.2:1389059-1389078 MS.gene21810:intron 25.0%
! GATAAACTGTTAGATTAACA+AGG - chr5.2:1389192-1389211 None:intergenic 25.0%
! TAGACATCAATCAAATTACT+TGG + chr5.2:1389058-1389077 MS.gene21810:intron 25.0%
! TCCTCTCAATAAATATAACA+GGG + chr5.2:1390024-1390043 MS.gene21810:CDS 25.0%
! TTATCTTTCATGAATTGTTC+AGG - chr5.2:1389566-1389585 None:intergenic 25.0%
! TTTGTTGAAGAAAGTAGTAA+TGG + chr5.2:1388955-1388974 MS.gene21810:intron 25.0%
!! AGAATAATACTTGATAGCAA+TGG - chr5.2:1388284-1388303 None:intergenic 25.0%
!! GAATAATACTTGATAGCAAT+GGG - chr5.2:1388283-1388302 None:intergenic 25.0%
!! TTTTATCAAATTTGGCATGT+TGG + chr5.2:1388674-1388693 MS.gene21810:intron 25.0%
AAATATAACATGCTCAAAGG+CGG + chr5.2:1388642-1388661 MS.gene21810:intron 30.0%
AACTGTTAGATTAACAAGGA+AGG - chr5.2:1389188-1389207 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.2:1389590-1389609 MS.gene21810:CDS 30.0%
AGGCATGTTAAACTCATAAT+AGG - chr5.2:1388880-1388899 None:intergenic 30.0%
CAATATTCTTTACTGTCACA+TGG + chr5.2:1389787-1389806 MS.gene21810:CDS 30.0%
CGCTAATAACTTGAATAATG+TGG - chr5.2:1389010-1389029 None:intergenic 30.0%
CTCAAATATAACATGCTCAA+AGG + chr5.2:1388639-1388658 MS.gene21810:intron 30.0%
CTCCTCTCAATAAATATAAC+AGG + chr5.2:1390023-1390042 MS.gene21810:CDS 30.0%
CTGAAATCATTGACAATATC+AGG - chr5.2:1389316-1389335 None:intergenic 30.0%
GTTATATTTGAGCTAGGTAA+TGG - chr5.2:1388631-1388650 None:intergenic 30.0%
TATGATCTCATTCTTGTTAG+TGG - chr5.2:1388244-1388263 None:intergenic 30.0%
TATTCTCAGAGAACTTCTAA+AGG + chr5.2:1388298-1388317 MS.gene21810:CDS 30.0%
TCCCTGTTATATTTATTGAG+AGG - chr5.2:1390028-1390047 None:intergenic 30.0%
TTCAATGTGATGTAAATTGC+AGG + chr5.2:1389500-1389519 MS.gene21810:intron 30.0%
! GGTAATGGTAAAATTATGCT+AGG - chr5.2:1388616-1388635 None:intergenic 30.0%
! TAAATAAAAGTGTGACCAGA+AGG + chr5.2:1388536-1388555 MS.gene21810:intron 30.0%
! TCATCACCTGATTTTATTCT+TGG - chr5.2:1389818-1389837 None:intergenic 30.0%
! TCATCATTTCAGAGTTGTTT+TGG + chr5.2:1388216-1388235 MS.gene21810:intron 30.0%
! TTGATGATCTTAACCAATTG+AGG - chr5.2:1388580-1388599 None:intergenic 30.0%
!! AATAAAATGATTTGGGTTGG+AGG + chr5.2:1389102-1389121 MS.gene21810:intron 30.0%
!! ATGTAAATTGCAGGTTTTGA+TGG + chr5.2:1389509-1389528 MS.gene21810:intron 30.0%
!! TGTAAATTGCAGGTTTTGAT+GGG + chr5.2:1389510-1389529 MS.gene21810:intron 30.0%
AAATGCATTGGGACTTCATA+TGG + chr5.2:1389745-1389764 MS.gene21810:CDS 35.0%
ACAAACGACCATAAACAACA+AGG - chr5.2:1389961-1389980 None:intergenic 35.0%
AGACTCTAATCCAAATGCAT+TGG + chr5.2:1389733-1389752 MS.gene21810:CDS 35.0%
ATATGAAGTCCCAATGCATT+TGG - chr5.2:1389746-1389765 None:intergenic 35.0%
ATCTTGTAAGGTGTAAGTAG+AGG - chr5.2:1388104-1388123 None:intergenic 35.0%
ATTGAAGCTGGTAAGTTTAC+TGG + chr5.2:1389355-1389374 MS.gene21810:intron 35.0%
CAAGTAGAATACTCACTGTA+TGG + chr5.2:1389155-1389174 MS.gene21810:intron 35.0%
CTAACAGTTTATCAACCGAA+TGG + chr5.2:1389199-1389218 MS.gene21810:intron 35.0%
CTACTTACACCTTACAAGAT+GGG + chr5.2:1388104-1388123 MS.gene21810:CDS 35.0%
CTTTCATGAATTGTTCAGGT+AGG - chr5.2:1389562-1389581 None:intergenic 35.0%
CTTTCTGCATATTCTGCAAA+TGG - chr5.2:1389710-1389729 None:intergenic 35.0%
GACATTCTACATTTCTGATC+CGG + chr5.2:1390048-1390067 MS.gene21810:CDS 35.0%
GACTCTAATCCAAATGCATT+GGG + chr5.2:1389734-1389753 MS.gene21810:CDS 35.0%
GACTTGTCTGTAGAAGATAT+GGG - chr5.2:1389232-1389251 None:intergenic 35.0%
GAGCATGTTATATTTGAGCT+AGG - chr5.2:1388637-1388656 None:intergenic 35.0%
GCATTAAGAGCAAATCTCTT+TGG - chr5.2:1390004-1390023 None:intergenic 35.0%
GTGGAACCAAGAATAAAATC+AGG + chr5.2:1389809-1389828 MS.gene21810:CDS 35.0%
GTTGGAAGAGTTTCAAATTC+AGG + chr5.2:1388692-1388711 MS.gene21810:intron 35.0%
TAAGGTGTAAGTAGAGGAAT+TGG - chr5.2:1388098-1388117 None:intergenic 35.0%
TATTCTTTACTGTCACATGG+TGG + chr5.2:1389790-1389809 MS.gene21810:CDS 35.0%
TCTACTTACACCTTACAAGA+TGG + chr5.2:1388103-1388122 MS.gene21810:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.2:1388116-1388135 None:intergenic 35.0%
TTTGCAGAATATGCAGAAAG+CGG + chr5.2:1389710-1389729 MS.gene21810:CDS 35.0%
! GCAAATTCAATCTAGCTCAT+AGG + chr5.2:1388126-1388145 MS.gene21810:CDS 35.0%
! TGACTTGTCTGTAGAAGATA+TGG - chr5.2:1389233-1389252 None:intergenic 35.0%
!! GGTAAGTTTACTGGTCTTTA+CGG + chr5.2:1389364-1389383 MS.gene21810:intron 35.0%
!! GTAAATTGCAGGTTTTGATG+GGG + chr5.2:1389511-1389530 MS.gene21810:intron 35.0%
AATGGTACTTTCATGGTTGC+AGG + chr5.2:1389884-1389903 MS.gene21810:CDS 40.0%
ACACACTTCCAATTCACAAC+TGG + chr5.2:1388783-1388802 MS.gene21810:intron 40.0%
ACGTGACACAAGCTACAAAT+AGG + chr5.2:1388981-1389000 MS.gene21810:intron 40.0%
ACTGCTTCAACAACTTCCAA+AGG - chr5.2:1389644-1389663 None:intergenic 40.0%
ATTCTACATTTCTGATCCGG+TGG + chr5.2:1390051-1390070 MS.gene21810:CDS 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.2:1389866-1389885 MS.gene21810:CDS 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.2:1389869-1389888 None:intergenic 40.0%
GAGATAGGAGCAGATAAAGT+TGG + chr5.2:1389671-1389690 MS.gene21810:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.2:1389995-1390014 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.2:1389343-1389362 MS.gene21810:CDS 40.0%
GGCTTTCAATGGTACTTTCA+TGG + chr5.2:1389877-1389896 MS.gene21810:CDS 40.0%
TCAAATTTGGCATGCTGGAA+GGG + chr5.2:1388465-1388484 MS.gene21810:CDS 40.0%
TGCTCTTTAGTCCATATACC+TGG - chr5.2:1388385-1388404 None:intergenic 40.0%
TTCTGTCAAATTTGGCATGC+TGG + chr5.2:1388460-1388479 MS.gene21810:CDS 40.0%
TTTGATGGGGTTGAAATCCA+TGG + chr5.2:1389524-1389543 MS.gene21810:CDS 40.0%
! AGCTGATGATGTGAACCAAT+CGG - chr5.2:1388842-1388861 None:intergenic 40.0%
! ATGGACTAAAGAGCAAGTTG+AGG + chr5.2:1388390-1388409 MS.gene21810:CDS 40.0%
! TCTCAGAGAACTTCTAAAGG+TGG + chr5.2:1388301-1388320 MS.gene21810:CDS 40.0%
!! AGAGCAGACCTTGTTGTTTA+TGG + chr5.2:1389950-1389969 MS.gene21810:CDS 40.0%
!! TACTTGATAGCAATGGGTTG+AGG - chr5.2:1388277-1388296 None:intergenic 40.0%
ACACAGATGGTTAGACCTTC+TGG - chr5.2:1388554-1388573 None:intergenic 45.0%
ATCCAAACACGCCAGGTATA+TGG + chr5.2:1388371-1388390 MS.gene21810:CDS 45.0%
CAATTCACAACTGGTGCGAA+CGG + chr5.2:1388792-1388811 MS.gene21810:intron 45.0%
CCAATTGAGGTTGACACAGA+TGG - chr5.2:1388567-1388586 None:intergenic 45.0%
CCATCTGTGTCAACCTCAAT+TGG + chr5.2:1388564-1388583 MS.gene21810:intron 45.0%
CTGTAGAAGATATGGGTGCT+TGG - chr5.2:1389225-1389244 None:intergenic 45.0%
CTTCTCATAGCTGAAGCTAC+TGG + chr5.2:1388325-1388344 MS.gene21810:CDS 45.0%
GAAGCAGTTGCGAATGAGAT+AGG + chr5.2:1389656-1389675 MS.gene21810:CDS 45.0%
GAGGCTATGACAGACAAGAT+GGG + chr5.2:1389906-1389925 MS.gene21810:CDS 45.0%
GATTGAAAGCCCTTACAGTC+TGG + chr5.2:1389841-1389860 MS.gene21810:CDS 45.0%
GCTGGAAGGGTTTCAAATTC+AGG + chr5.2:1388478-1388497 MS.gene21810:CDS 45.0%
GTAGATGCGGTTCATGACAA+AGG + chr5.2:1388427-1388446 MS.gene21810:CDS 45.0%
GTCAAATTTGGCATGCTGGA+AGG + chr5.2:1388464-1388483 MS.gene21810:CDS 45.0%
GTGGAAACCTATCGTAGATG+CGG + chr5.2:1388414-1388433 MS.gene21810:CDS 45.0%
GTTGAAATCCATGGAGCTCA+TGG + chr5.2:1389533-1389552 MS.gene21810:CDS 45.0%
TACATTTCTGATCCGGTGGT+AGG + chr5.2:1390055-1390074 MS.gene21810:CDS 45.0%
TAGTCCGTATAACCTACCAC+CGG - chr5.2:1390070-1390089 None:intergenic 45.0%
TCATCTGTCCTTAGTCGTCT+CGG - chr5.2:1389289-1389308 None:intergenic 45.0%
TCATGAACCGCATCTACGAT+AGG - chr5.2:1388424-1388443 None:intergenic 45.0%
TCATTGGCACCAGACTGTAA+GGG - chr5.2:1389853-1389872 None:intergenic 45.0%
TGATCCGGTGGTAGGTTATA+CGG + chr5.2:1390063-1390082 MS.gene21810:CDS 45.0%
TGATGTGAACCAATCGGTGT+AGG - chr5.2:1388836-1388855 None:intergenic 45.0%
!! GAATCGCTGTCGATTTCCTT+TGG + chr5.2:1389625-1389644 MS.gene21810:CDS 45.0%
!! ATAAAAATAAAATTTAGATT+AGG + chr5.2:1388758-1388777 MS.gene21810:intron 5.0%
!!! ATATTTTTTTTTATCAAATT+TGG + chr5.2:1388666-1388685 MS.gene21810:intron 5.0%
CGTTCGCACCAGTTGTGAAT+TGG - chr5.2:1388794-1388813 None:intergenic 50.0%
CTATCTGTGCCTACACCGAT+TGG + chr5.2:1388824-1388843 MS.gene21810:intron 50.0%
CTCATTGGCACCAGACTGTA+AGG - chr5.2:1389854-1389873 None:intergenic 50.0%
GATATGGGTGCTTGGCCATT+CGG - chr5.2:1389217-1389236 None:intergenic 50.0%
GATGCGGTTCATGACAAAGG+CGG + chr5.2:1388430-1388449 MS.gene21810:CDS 50.0%
GGAGGCTATGACAGACAAGA+TGG + chr5.2:1389905-1389924 MS.gene21810:CDS 50.0%
GGTACTTTCATGGTTGCAGG+AGG + chr5.2:1389887-1389906 MS.gene21810:CDS 50.0%
GTCCATATACCTGGCGTGTT+TGG - chr5.2:1388376-1388395 None:intergenic 50.0%
TCACGAAACCGAGACGACTA+AGG + chr5.2:1389278-1389297 MS.gene21810:CDS 50.0%
! CAGTCTGGTGCCAATGAGAA+AGG + chr5.2:1389856-1389875 MS.gene21810:CDS 50.0%
! CTAAAGAGCAAGTTGAGGCG+TGG + chr5.2:1388395-1388414 MS.gene21810:CDS 50.0%
CAAGGCTATCCAAACACGCC+AGG + chr5.2:1388364-1388383 MS.gene21810:CDS 55.0%
GGTGTCTCAGACACTGCTCA+AGG + chr5.2:1388346-1388365 MS.gene21810:CDS 55.0%
GTAGGTAGCCATGAGCTCCA+TGG - chr5.2:1389544-1389563 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1388059 1390105 1388059 ID=MS.gene21810
chr5.2 mRNA 1388059 1390105 1388059 ID=MS.gene21810.t1;Parent=MS.gene21810
chr5.2 exon 1388059 1388147 1388059 ID=MS.gene21810.t1.exon1;Parent=MS.gene21810.t1
chr5.2 CDS 1388059 1388147 1388059 ID=cds.MS.gene21810.t1;Parent=MS.gene21810.t1
chr5.2 exon 1388228 1388499 1388228 ID=MS.gene21810.t1.exon2;Parent=MS.gene21810.t1
chr5.2 CDS 1388228 1388499 1388228 ID=cds.MS.gene21810.t1;Parent=MS.gene21810.t1
chr5.2 exon 1389206 1389364 1389206 ID=MS.gene21810.t1.exon3;Parent=MS.gene21810.t1
chr5.2 CDS 1389206 1389364 1389206 ID=cds.MS.gene21810.t1;Parent=MS.gene21810.t1
chr5.2 exon 1389522 1390105 1389522 ID=MS.gene21810.t1.exon4;Parent=MS.gene21810.t1
chr5.2 CDS 1389522 1390105 1389522 ID=cds.MS.gene21810.t1;Parent=MS.gene21810.t1
Gene Sequence

>MS.gene21810

ATGGGTATCAAAATGGAAGGTGCTAACATCACTGATCCAATTCCTCTACTTACACCTTACAAGATGGGCAAATTCAATCTAGCTCATAGGTGCATACTACATACCATTTCACTTTCTATTCTATTTTATTTCAATGTTTTGCTCTTGCTAAATAATTTCATCATTTCAGAGTTGTTTTGGCACCACTAACAAGAATGAGATCATACAACAATGTTCCTCAACCCATTGCTATCAAGTATTATTCTCAGAGAACTTCTAAAGGTGGTCTTCTCATAGCTGAAGCTACTGGTGTCTCAGACACTGCTCAAGGCTATCCAAACACGCCAGGTATATGGACTAAAGAGCAAGTTGAGGCGTGGAAACCTATCGTAGATGCGGTTCATGACAAAGGCGGTATATTTTTCTGTCAAATTTGGCATGCTGGAAGGGTTTCAAATTCAGGTTTGTATCTATTTCGTCATATCATTATTTATTATGTAAATAAAAGTGTGACCAGAAGGTCTAACCATCTGTGTCAACCTCAATTGGTTAAGATCATCAATTTTTAACATAGACCTAGCATAATTTTACCATTACCTAGCTCAAATATAACATGCTCAAAGGCGGTATATTTTTTTTTATCAAATTTGGCATGTTGGAAGAGTTTCAAATTCAGGTATTTATCTATTTGCTCAAATCATTAGTGTTTTTTTTCCTTTGATAAAAATAAAATTTAGATTAGGTGACACACTTCCAATTCACAACTGGTGCGAACGGAATGTTTAACTATCTGTGCCTACACCGATTGGTTCACATCATCAGCTTTTATTTAACATAGACCTATTATGAGTTTAACATGCCTTGTGTGTTATTTTTTCTAAAATATTTTTTTTGTCAAAAAACAAAATTTCAAGCAATTTGTTGAAGAAAGTAGTAATGGAAAACGTGACACAAGCTACAAATAGGAAACCACATTATTCAAGTTATTAGCGTTAACTAGCTCAAATATAACATTTTTTTTAGACATCAATCAAATTACTTGGGTCTACTATCAGTTACAGTAAAATAAAATGATTTGGGTTGGAGGTTGTTATTATTAATTATTACTATCTCGGTGCAAGTAGAATACTCACTGTATGGTCATGTTCCTTCCTTGTTAATCTAACAGTTTATCAACCGAATGGCCAAGCACCCATATCTTCTACAGACAAGTCACTCACAAGCAATGATGTACAACAGTTCACGAAACCGAGACGACTAAGGACAGATGAAATTCCTGATATTGTCAATGATTTCAGACTCGCTGCAAGAAATGCTATTGAAGCTGGTAAGTTTACTGGTCTTTACGGATTTTTTACGAAATTGAAACATGCTTCAATCATAGTACAATACTGATATTTTTCAGAAACAAGAGTATTTGTTGCTTTAAAGCACAAAGACATTTTTCAAGTCACTTAACATGTTCAATGTGATGTAAATTGCAGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACCTGAACAATTCATGAAAGATAAAGTAAATGACAGAACAGATGAATATGGCAGATCGCTCGAGAATCGCTGTCGATTTCCTTTGGAAGTTGTTGAAGCAGTTGCGAATGAGATAGGAGCAGATAAAGTTGGAATCAGACTATCACCATTTGCAGAATATGCAGAAAGCGGAGACTCTAATCCAAATGCATTGGGACTTCATATGGTTAATGCTCTCAATAAGTACAATATTCTTTACTGTCACATGGTGGAACCAAGAATAAAATCAGGTGATGAAACGATTGAAAGCCCTTACAGTCTGGTGCCAATGAGAAAGGCTTTCAATGGTACTTTCATGGTTGCAGGAGGCTATGACAGACAAGATGGGATCAATGCTATAGCAGATAATAGAGCAGACCTTGTTGTTTATGGTCGTTTGTTCTTAGCGAATCCAGATTTGCCAAAGAGATTTGCTCTTAATGCTCCTCTCAATAAATATAACAGGGAGACATTCTACATTTCTGATCCGGTGGTAGGTTATACGGACTATCCATTTCTTGAATGA
Protein sequence

>MS.gene21810.t1

MGIKMEGANITDPIPLLTPYKMGKFNLAHRVVLAPLTRMRSYNNVPQPIAIKYYSQRTSKGGLLIAEATGVSDTAQGYPNTPGIWTKEQVEAWKPIVDAVHDKGGIFFCQIWHAGRVSNSVYQPNGQAPISSTDKSLTSNDVQQFTKPRRLRTDEIPDIVNDFRLAARNAIEAGFDGVEIHGAHGYLPEQFMKDKVNDRTDEYGRSLENRCRFPLEVVEAVANEIGADKVGIRLSPFAEYAESGDSNPNALGLHMVNALNKYNILYCHMVEPRIKSGDETIESPYSLVPMRKAFNGTFMVAGGYDRQDGINAIADNRADLVVYGRLFLANPDLPKRFALNAPLNKYNRETFYISDPVVGYTDYPFLE