AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21811.t1 MTR_5g006740 84.066 364 58 0 7 370 2 365 0.0 644
MS.gene21811.t1 MTR_5g006800 80.811 370 70 1 1 370 1 369 0.0 634
MS.gene21811.t1 MTR_5g006720 82.940 381 25 3 1 370 1 352 0.0 627
MS.gene21811.t1 MTR_5g006780 80.601 366 69 1 7 370 6 371 0.0 625
MS.gene21811.t1 MTR_5g006750 77.322 366 81 1 7 370 6 371 0.0 613
MS.gene21811.t1 MTR_5g008040 78.393 361 78 0 9 369 10 370 0.0 603
MS.gene21811.t1 MTR_5g006670 79.006 362 70 1 9 370 4 359 0.0 603
MS.gene21811.t1 MTR_5g006740 79.670 364 57 1 7 370 2 348 0.0 595
MS.gene21811.t1 MTR_5g006710 78.056 360 73 1 11 370 10 363 0.0 595
MS.gene21811.t1 MTR_3g115600 65.289 363 122 1 8 370 5 363 0.0 511
MS.gene21811.t1 MTR_4g125470 53.514 370 159 3 13 369 19 388 1.83e-140 405
MS.gene21811.t1 MTR_5g006730 81.818 110 20 0 9 118 8 117 2.46e-61 194
MS.gene21811.t1 MTR_3g096570 74.324 74 16 1 176 249 8 78 6.11e-29 113
MS.gene21811.t1 MTR_3g096562 65.476 84 26 1 166 249 162 242 1.39e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21811.t1 AT1G76680 70.000 360 108 0 11 370 10 369 0.0 553
MS.gene21811.t1 AT1G76690 68.871 363 113 0 8 370 9 371 0.0 551
MS.gene21811.t1 AT1G76680 64.948 388 111 1 8 370 7 394 0.0 539
MS.gene21811.t1 AT1G09400 65.152 330 109 1 19 348 1 324 9.67e-168 471
MS.gene21811.t1 AT1G09400 65.185 270 88 1 79 348 2 265 2.34e-135 387
MS.gene21811.t1 AT2G06050 50.133 377 165 5 13 369 12 385 2.75e-133 386
MS.gene21811.t1 AT2G06050 50.133 377 165 5 13 369 12 385 2.75e-133 386
MS.gene21811.t1 AT2G06050 50.133 377 165 5 13 369 12 385 2.75e-133 386
MS.gene21811.t1 AT1G17990 66.794 262 78 3 8 267 4 258 6.47e-130 373
MS.gene21811.t1 AT1G18020 66.794 262 78 3 8 267 4 258 6.47e-130 373
MS.gene21811.t1 AT1G17990 63.740 262 78 4 8 267 4 250 3.62e-121 351

Find 96 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCAATAGTTTCCTTTA+TGG 0.094882 5.2:-1385492 None:intergenic
CTACATTCTTCTGTCAAATT+TGG 0.146007 5.2:+1384566 MS.gene21811:CDS
TCTCCATATTATACCTGTTT+AGG 0.193368 5.2:-1385703 None:intergenic
GCAAATCTCTTTGGCAAATC+TGG 0.201994 5.2:-1385668 None:intergenic
AACTAATCACATGGAAATTA+TGG 0.212014 5.2:+1384019 None:intergenic
TCAATGCTATAGCTGAAAAT+AGG 0.224729 5.2:+1385606 MS.gene21811:CDS
GTTGGAAGGGTTTCTAATTC+TGG 0.234366 5.2:+1384592 MS.gene21811:CDS
TGCACTTCTGATCCAGTTCT+TGG 0.240931 5.2:+1385731 MS.gene21811:CDS
GACTCAAATCCGAAGGTATT+GGG 0.272408 5.2:+1385410 MS.gene21811:CDS
CTCCATATTATACCTGTTTA+GGG 0.280647 5.2:-1385702 None:intergenic
GAACCGTTGTAGATTTGTTT+TGG 0.287772 5.2:+1385301 MS.gene21811:CDS
CTAAAGTCATTGACAATATT+AGG 0.289168 5.2:-1384937 None:intergenic
CATTCTTCGAAATCTGAAAA+AGG 0.307639 5.2:-1385383 None:intergenic
GTTAATGCCCTCAATAAATA+TGG 0.323996 5.2:+1385443 MS.gene21811:CDS
GGCTTTCAATGGCACTTTCA+TGG 0.337518 5.2:+1385553 MS.gene21811:CDS
TTTGATGGGGTTGAAATTCA+TGG 0.358736 5.2:+1385200 MS.gene21811:CDS
GATATCGGTGCTTGTCCATT+TGG 0.366252 5.2:-1384820 None:intergenic
CACTTAATGCTCCCCTAAAC+AGG 0.366939 5.2:+1385690 MS.gene21811:CDS
TCCCCTAAACAGGTATAATA+TGG 0.374123 5.2:+1385700 MS.gene21811:CDS
GCATTAAGTGCAAATCTCTT+TGG 0.379309 5.2:-1385677 None:intergenic
TTGAATTTGCCCATCTTGTA+AGG 0.380236 5.2:-1384074 None:intergenic
ACAGAAGAATGTAGCACCTT+TGG 0.386994 5.2:-1384557 None:intergenic
GTTGAAATTCATGGGGCTAC+TGG 0.390224 5.2:+1385209 MS.gene21811:CDS
CACCAAGTTGTGAAGACATT+CGG 0.398140 5.2:-1385519 None:intergenic
ATGTTTATTCATTCAAGAAA+AGG 0.404316 5.2:-1385767 None:intergenic
CCATTGAAAGCCTTTCTCAT+TGG 0.410004 5.2:-1385542 None:intergenic
AGACTCAAATCCGAAGGTAT+TGG 0.418300 5.2:+1385409 MS.gene21811:CDS
AATGACAGAACAGATGAATA+TGG 0.423632 5.2:+1385266 MS.gene21811:CDS
CAACTTGGTGCCAATGAGAA+AGG 0.428595 5.2:+1385532 MS.gene21811:CDS
TTCTGTCAAATTTGGCATGT+TGG 0.430125 5.2:+1384574 MS.gene21811:CDS
CAATGCTATAGCTGAAAATA+GGG 0.430483 5.2:+1385607 MS.gene21811:CDS
GTTGTTGTATGATCTTTGTC+TGG 0.432389 5.2:-1384219 None:intergenic
AGGCCCTTTGAGAATAATAT+AGG 0.432885 5.2:-1384262 None:intergenic
GTCAAATTTGGCATGTTGGA+AGG 0.433314 5.2:+1384578 MS.gene21811:CDS
GCAAATTCAATCTATCTCAT+AGG 0.435780 5.2:+1384087 MS.gene21811:CDS
ATCTTGTCTTTCATAGCCTC+TGG 0.440241 5.2:-1385579 None:intergenic
TTGATGGGGTTGAAATTCAT+GGG 0.442458 5.2:+1385201 MS.gene21811:CDS
TTCTCTTATCTGAAGCTACC+GGG 0.443957 5.2:+1384297 MS.gene21811:CDS
ATTCAAACACACCTGGCATA+TGG 0.446612 5.2:+1384485 MS.gene21811:CDS
TAACCAGTTTATCAACCAAA+TGG 0.449319 5.2:+1384805 MS.gene21811:intron
ATAGAATACCATATTTATTG+AGG 0.453888 5.2:-1385451 None:intergenic
CTTCTCTTATCTGAAGCTAC+CGG 0.463533 5.2:+1384296 MS.gene21811:CDS
AACCGAATGTCTTCACAACT+TGG 0.469083 5.2:+1385517 MS.gene21811:CDS
AGGGCAGATCTTATTGCTTA+CGG 0.471109 5.2:+1385626 MS.gene21811:CDS
TAGTCGGTATAGCCAAGAAC+TGG 0.478883 5.2:-1385743 None:intergenic
AAGCAACTAAGACAACGAAT+TGG 0.478951 5.2:+1384853 MS.gene21811:CDS
TCATATGGTAGAATCCATAA+AGG 0.480967 5.2:+1385478 MS.gene21811:CDS
TGGTATTCTATATTGTCATA+TGG 0.482929 5.2:+1385463 MS.gene21811:CDS
ACTTCTTACTCCTTACAAGA+TGG 0.486533 5.2:+1384064 MS.gene21811:CDS
GCAAGAAATGCTATTGAAGC+TGG 0.490925 5.2:+1384967 MS.gene21811:CDS
GAAGCTGTTGTAAATGAGAT+AGG 0.491988 5.2:+1385332 MS.gene21811:CDS
CTGTCCTATATTATTCTCAA+AGG 0.493412 5.2:+1384258 MS.gene21811:CDS
GAAGGTATTGGGGCTTTACA+TGG 0.495448 5.2:+1385421 MS.gene21811:CDS
TGTTTATTCATTCAAGAAAA+GGG 0.498900 5.2:-1385766 None:intergenic
TAGAATACCATATTTATTGA+GGG 0.499116 5.2:-1385450 None:intergenic
TCAAATTTGGCATGTTGGAA+GGG 0.505329 5.2:+1384579 MS.gene21811:CDS
TAAGGAGTAAGAAGTGGAAT+GGG 0.514396 5.2:-1384056 None:intergenic
TGCTTGTCTGTAGAAGATAT+CGG 0.515089 5.2:-1384835 None:intergenic
TCTTCTGTTCTTAGCCTCCT+CGG 0.524286 5.2:-1384910 None:intergenic
TGTCCTATATTATTCTCAAA+GGG 0.524479 5.2:+1384259 MS.gene21811:CDS
GTAAGGAGTAAGAAGTGGAA+TGG 0.528759 5.2:-1384057 None:intergenic
ATGTAAAGCCCCAATACCTT+CGG 0.529971 5.2:-1385419 None:intergenic
CTTTCATGAATTGCTCAAGT+AGG 0.535013 5.2:-1385235 None:intergenic
CTTCTTACTCCTTACAAGAT+GGG 0.539764 5.2:+1384065 MS.gene21811:CDS
CAACTAAGACAACGAATTGG+AGG 0.554386 5.2:+1384856 MS.gene21811:CDS
AGAGGCTATGAAAGACAAGA+TGG 0.556607 5.2:+1385581 MS.gene21811:CDS
AATCACATGGAAATTATGGT+TGG 0.558584 5.2:+1384023 None:intergenic
TATAGGACAGCATGCTGTTG+AGG 0.564762 5.2:-1384245 None:intergenic
GCATGAACAGCATCCACGAT+AGG 0.566839 5.2:-1384535 None:intergenic
CCAATGAGAAAGGCTTTCAA+TGG 0.567256 5.2:+1385542 MS.gene21811:CDS
TATGATCTTTGTCTGGTCAA+CGG 0.586166 5.2:-1384212 None:intergenic
TCTCAAAGGGCCTCTGAAGG+TGG 0.587655 5.2:+1384272 MS.gene21811:CDS
CGAAGGTATTCAAACACACC+TGG 0.587734 5.2:+1384478 MS.gene21811:intron
TAAGAGAAGACCACCTTCAG+AGG 0.594699 5.2:-1384282 None:intergenic
AGACAACGAATTGGAGGCGA+TGG 0.601167 5.2:+1384862 MS.gene21811:CDS
ATCTTGTAAGGAGTAAGAAG+TGG 0.605352 5.2:-1384062 None:intergenic
GGGGTCTCTGAAACTGCTCA+AGG 0.606667 5.2:+1384317 MS.gene21811:CDS
ACTCAAATCCGAAGGTATTG+GGG 0.606871 5.2:+1385411 MS.gene21811:CDS
CAAAAGAGCAAGTCGTAGCG+TGG 0.607477 5.2:+1384509 MS.gene21811:CDS
TCATTCAAGAAAAGGGTAGT+CGG 0.610845 5.2:-1385759 None:intergenic
TATTCTCAAAGGGCCTCTGA+AGG 0.617874 5.2:+1384269 MS.gene21811:CDS
TTGAGCAGTTTCAGAGACCC+CGG 0.624367 5.2:-1384315 None:intergenic
TGATGGGGTTGAAATTCATG+GGG 0.626342 5.2:+1385202 MS.gene21811:CDS
GGCACTTTCATGGTTACCAG+AGG 0.627905 5.2:+1385563 MS.gene21811:CDS
ATGTGGAGACTCAAATCCGA+AGG 0.628353 5.2:+1385403 MS.gene21811:CDS
GGGTCTCTGAAACTGCTCAA+GGG 0.629621 5.2:+1384318 MS.gene21811:CDS
GTGGATGCTGTTCATGCCAA+AGG 0.634883 5.2:+1384541 MS.gene21811:CDS
TTTCCAAAACAAATCTACAA+CGG 0.645393 5.2:-1385304 None:intergenic
TCTCTTATCTGAAGCTACCG+GGG 0.649902 5.2:+1384298 MS.gene21811:CDS
GAGGCTATGAAAGACAAGAT+GGG 0.651463 5.2:+1385582 MS.gene21811:CDS
TCCATATTATACCTGTTTAG+GGG 0.652104 5.2:-1385701 None:intergenic
CACAATTCACACAACCGAGG+AGG 0.668803 5.2:+1384896 MS.gene21811:CDS
CGTAGCGTGGAAACCTATCG+TGG 0.669633 5.2:+1384522 MS.gene21811:CDS
GACAGAACAGATGAATATGG+CGG 0.676710 5.2:+1385269 MS.gene21811:CDS
TGTTGTAAATGAGATAGGTG+CGG 0.689933 5.2:+1385337 MS.gene21811:CDS
TATCACAATTCACACAACCG+AGG 0.720210 5.2:+1384893 MS.gene21811:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATTTTAAACAATTTTA+TGG - chr5.2:1384154-1384173 None:intergenic 10.0%
!! TAAGTAATTCTAAATTCTAA+TGG + chr5.2:1384394-1384413 MS.gene21811:intron 15.0%
!!! GATTTTTCAGTATTATTTTT+AGG + chr5.2:1384651-1384670 MS.gene21811:intron 15.0%
!!! TTTTATTATATATTATGCGA+AGG + chr5.2:1384461-1384480 MS.gene21811:intron 15.0%
!! ATAGAATACCATATTTATTG+AGG - chr5.2:1385454-1385473 None:intergenic 20.0%
!! GTTAAAGATAGTTATGAAAT+TGG - chr5.2:1384364-1384383 None:intergenic 20.0%
!! TAGAATACCATATTTATTGA+GGG - chr5.2:1385453-1385472 None:intergenic 20.0%
!!! AACTCTAAAATCAAATCAAT+AGG - chr5.2:1384183-1384202 None:intergenic 20.0%
!!! ACTCTAAAATCAAATCAATA+GGG - chr5.2:1384182-1384201 None:intergenic 20.0%
!!! ATTGAAGCATTTTGAATTTT+CGG - chr5.2:1385020-1385039 None:intergenic 20.0%
!!! ATTTGATTTTAGAGTTGTTT+TGG + chr5.2:1384187-1384206 MS.gene21811:intron 20.0%
!!! TTATTTTGACTTCTTATAAC+AGG + chr5.2:1385138-1385157 MS.gene21811:intron 20.0%
!!! TTTCAGTATTATTTTTAGGT+GGG + chr5.2:1384655-1384674 MS.gene21811:intron 20.0%
!!! TTTTCAGTATTATTTTTAGG+TGG + chr5.2:1384654-1384673 MS.gene21811:intron 20.0%
! AAAATGCTTCAATATAAGAG+AGG + chr5.2:1385027-1385046 MS.gene21811:intron 25.0%
! CTAAAGTCATTGACAATATT+AGG - chr5.2:1384940-1384959 None:intergenic 25.0%
! TGGTATTCTATATTGTCATA+TGG + chr5.2:1385463-1385482 MS.gene21811:CDS 25.0%
! TGTCCTATATTATTCTCAAA+GGG + chr5.2:1384259-1384278 MS.gene21811:CDS 25.0%
! TTCATCAATAGTTTCCTTTA+TGG - chr5.2:1385495-1385514 None:intergenic 25.0%
! TTTCCAAAACAAATCTACAA+CGG - chr5.2:1385307-1385326 None:intergenic 25.0%
!! AACATTTTGTGTACTAATTG+TGG + chr5.2:1385163-1385182 MS.gene21811:intron 25.0%
!!! TATTATTTTTAGGTGGGAAT+TGG + chr5.2:1384661-1384680 MS.gene21811:intron 25.0%
AACTGGTTAGAAGAATTGTA+TGG - chr5.2:1384794-1384813 None:intergenic 30.0%
AATGACAGAACAGATGAATA+TGG + chr5.2:1385266-1385285 MS.gene21811:CDS 30.0%
AATGTGAAATTTAGAGACGT+CGG - chr5.2:1385095-1385114 None:intergenic 30.0%
CAATGCTATAGCTGAAAATA+GGG + chr5.2:1385607-1385626 MS.gene21811:CDS 30.0%
CATTCTTCGAAATCTGAAAA+AGG - chr5.2:1385386-1385405 None:intergenic 30.0%
CTACATTCTTCTGTCAAATT+TGG + chr5.2:1384566-1384585 MS.gene21811:CDS 30.0%
CTCCATATTATACCTGTTTA+GGG - chr5.2:1385705-1385724 None:intergenic 30.0%
CTGTCCTATATTATTCTCAA+AGG + chr5.2:1384258-1384277 MS.gene21811:CDS 30.0%
GCAAATTCAATCTATCTCAT+AGG + chr5.2:1384087-1384106 MS.gene21811:CDS 30.0%
GTTAATGCCCTCAATAAATA+TGG + chr5.2:1385443-1385462 MS.gene21811:CDS 30.0%
GTTGAAGCAAGCATAATAAA+TGG - chr5.2:1384132-1384151 None:intergenic 30.0%
TAACCAGTTTATCAACCAAA+TGG + chr5.2:1384805-1384824 MS.gene21811:intron 30.0%
TCAATGCTATAGCTGAAAAT+AGG + chr5.2:1385606-1385625 MS.gene21811:CDS 30.0%
TCATATGGTAGAATCCATAA+AGG + chr5.2:1385478-1385497 MS.gene21811:CDS 30.0%
TCCATATTATACCTGTTTAG+GGG - chr5.2:1385704-1385723 None:intergenic 30.0%
TCTCCATATTATACCTGTTT+AGG - chr5.2:1385706-1385725 None:intergenic 30.0%
! CTTTAGTTTACGTCTTATTC+TGG - chr5.2:1385053-1385072 None:intergenic 30.0%
! TTTTCAGATTTCGAAGAATG+TGG + chr5.2:1385386-1385405 MS.gene21811:CDS 30.0%
AAGCAACTAAGACAACGAAT+TGG + chr5.2:1384853-1384872 MS.gene21811:CDS 35.0%
ACTTCTTACTCCTTACAAGA+TGG + chr5.2:1384064-1384083 MS.gene21811:CDS 35.0%
ATCTTGTAAGGAGTAAGAAG+TGG - chr5.2:1384065-1384084 None:intergenic 35.0%
CTTCTTACTCCTTACAAGAT+GGG + chr5.2:1384065-1384084 MS.gene21811:CDS 35.0%
CTTTCATGAATTGCTCAAGT+AGG - chr5.2:1385238-1385257 None:intergenic 35.0%
GAAGCTGTTGTAAATGAGAT+AGG + chr5.2:1385332-1385351 MS.gene21811:CDS 35.0%
GCATTAAGTGCAAATCTCTT+TGG - chr5.2:1385680-1385699 None:intergenic 35.0%
GTTGTTGTATGATCTTTGTC+TGG - chr5.2:1384222-1384241 None:intergenic 35.0%
TAAGGAGTAAGAAGTGGAAT+GGG - chr5.2:1384059-1384078 None:intergenic 35.0%
TATGATCTTTGTCTGGTCAA+CGG - chr5.2:1384215-1384234 None:intergenic 35.0%
TCAAATTTGGCATGTTGGAA+GGG + chr5.2:1384579-1384598 MS.gene21811:CDS 35.0%
TCATTCAAGAAAAGGGTAGT+CGG - chr5.2:1385762-1385781 None:intergenic 35.0%
TCCCCTAAACAGGTATAATA+TGG + chr5.2:1385700-1385719 MS.gene21811:CDS 35.0%
TGCTTGTCTGTAGAAGATAT+CGG - chr5.2:1384838-1384857 None:intergenic 35.0%
TGTTGTAAATGAGATAGGTG+CGG + chr5.2:1385337-1385356 MS.gene21811:CDS 35.0%
TTCTGTCAAATTTGGCATGT+TGG + chr5.2:1384574-1384593 MS.gene21811:CDS 35.0%
TTGAATTTGCCCATCTTGTA+AGG - chr5.2:1384077-1384096 None:intergenic 35.0%
TTGATGGGGTTGAAATTCAT+GGG + chr5.2:1385201-1385220 MS.gene21811:CDS 35.0%
TTTGATGGGGTTGAAATTCA+TGG + chr5.2:1385200-1385219 MS.gene21811:CDS 35.0%
! AGGCCCTTTGAGAATAATAT+AGG - chr5.2:1384265-1384284 None:intergenic 35.0%
!! GAACCGTTGTAGATTTGTTT+TGG + chr5.2:1385301-1385320 MS.gene21811:CDS 35.0%
!! TGCACATTGTAGGTTTTGAT+GGG + chr5.2:1385186-1385205 MS.gene21811:intron 35.0%
!! TGTCCATTTGGTTGATAAAC+TGG - chr5.2:1384811-1384830 None:intergenic 35.0%
AACCGAATGTCTTCACAACT+TGG + chr5.2:1385517-1385536 MS.gene21811:CDS 40.0%
ACAGAAGAATGTAGCACCTT+TGG - chr5.2:1384560-1384579 None:intergenic 40.0%
AGAGGCTATGAAAGACAAGA+TGG + chr5.2:1385581-1385600 MS.gene21811:CDS 40.0%
AGGGCAGATCTTATTGCTTA+CGG + chr5.2:1385626-1385645 MS.gene21811:CDS 40.0%
ATCTTGTCTTTCATAGCCTC+TGG - chr5.2:1385582-1385601 None:intergenic 40.0%
ATGTAAAGCCCCAATACCTT+CGG - chr5.2:1385422-1385441 None:intergenic 40.0%
ATTCAAACACACCTGGCATA+TGG + chr5.2:1384485-1384504 MS.gene21811:CDS 40.0%
CAACTAAGACAACGAATTGG+AGG + chr5.2:1384856-1384875 MS.gene21811:CDS 40.0%
CACCAAGTTGTGAAGACATT+CGG - chr5.2:1385522-1385541 None:intergenic 40.0%
CCAATGAGAAAGGCTTTCAA+TGG + chr5.2:1385542-1385561 MS.gene21811:CDS 40.0%
CCATTGAAAGCCTTTCTCAT+TGG - chr5.2:1385545-1385564 None:intergenic 40.0%
CTAATTGTGGTGCACATTGT+AGG + chr5.2:1385176-1385195 MS.gene21811:intron 40.0%
GACAGAACAGATGAATATGG+CGG + chr5.2:1385269-1385288 MS.gene21811:CDS 40.0%
GAGGCTATGAAAGACAAGAT+GGG + chr5.2:1385582-1385601 MS.gene21811:CDS 40.0%
GCAAATCTCTTTGGCAAATC+TGG - chr5.2:1385671-1385690 None:intergenic 40.0%
GCAAGAAATGCTATTGAAGC+TGG + chr5.2:1384967-1384986 MS.gene21811:CDS 40.0%
GTAAGGAGTAAGAAGTGGAA+TGG - chr5.2:1384060-1384079 None:intergenic 40.0%
GTCAAATTTGGCATGTTGGA+AGG + chr5.2:1384578-1384597 MS.gene21811:CDS 40.0%
GTTGGAAGGGTTTCTAATTC+TGG + chr5.2:1384592-1384611 MS.gene21811:CDS 40.0%
TATCACAATTCACACAACCG+AGG + chr5.2:1384893-1384912 MS.gene21811:CDS 40.0%
TGATGGGGTTGAAATTCATG+GGG + chr5.2:1385202-1385221 MS.gene21811:CDS 40.0%
! AGACTCAAATCCGAAGGTAT+TGG + chr5.2:1385409-1385428 MS.gene21811:CDS 40.0%
! CTTCTCTTATCTGAAGCTAC+CGG + chr5.2:1384296-1384315 MS.gene21811:CDS 40.0%
! TTCTCTTATCTGAAGCTACC+GGG + chr5.2:1384297-1384316 MS.gene21811:CDS 40.0%
!! ACTCAAATCCGAAGGTATTG+GGG + chr5.2:1385411-1385430 MS.gene21811:CDS 40.0%
!! GACTCAAATCCGAAGGTATT+GGG + chr5.2:1385410-1385429 MS.gene21811:CDS 40.0%
!! GCACATTGTAGGTTTTGATG+GGG + chr5.2:1385187-1385206 MS.gene21811:intron 40.0%
!! GTGCACATTGTAGGTTTTGA+TGG + chr5.2:1385185-1385204 MS.gene21811:intron 40.0%
ATGTGGAGACTCAAATCCGA+AGG + chr5.2:1385403-1385422 MS.gene21811:CDS 45.0%
CACTTAATGCTCCCCTAAAC+AGG + chr5.2:1385690-1385709 MS.gene21811:CDS 45.0%
GAGATAGGTGCGGAAAAAGT+TGG + chr5.2:1385347-1385366 MS.gene21811:CDS 45.0%
GGCTTTCAATGGCACTTTCA+TGG + chr5.2:1385553-1385572 MS.gene21811:CDS 45.0%
GTTGAAATTCATGGGGCTAC+TGG + chr5.2:1385209-1385228 MS.gene21811:CDS 45.0%
TAAGAGAAGACCACCTTCAG+AGG - chr5.2:1384285-1384304 None:intergenic 45.0%
TAGTCGGTATAGCCAAGAAC+TGG - chr5.2:1385746-1385765 None:intergenic 45.0%
TATAGGACAGCATGCTGTTG+AGG - chr5.2:1384248-1384267 None:intergenic 45.0%
TATTCTCAAAGGGCCTCTGA+AGG + chr5.2:1384269-1384288 MS.gene21811:CDS 45.0%
TCTTCTGTTCTTAGCCTCCT+CGG - chr5.2:1384913-1384932 None:intergenic 45.0%
TGCACTTCTGATCCAGTTCT+TGG + chr5.2:1385731-1385750 MS.gene21811:CDS 45.0%
! GATATCGGTGCTTGTCCATT+TGG - chr5.2:1384823-1384842 None:intergenic 45.0%
! TCTCTTATCTGAAGCTACCG+GGG + chr5.2:1384298-1384317 MS.gene21811:CDS 45.0%
! TGCTCTTTTGTCCATATGCC+AGG - chr5.2:1384499-1384518 None:intergenic 45.0%
!! CAACTTGGTGCCAATGAGAA+AGG + chr5.2:1385532-1385551 MS.gene21811:CDS 45.0%
!! CGAAGGTATTCAAACACACC+TGG + chr5.2:1384478-1384497 MS.gene21811:intron 45.0%
!! GAAGGTATTGGGGCTTTACA+TGG + chr5.2:1385421-1385440 MS.gene21811:CDS 45.0%
AGACAACGAATTGGAGGCGA+TGG + chr5.2:1384862-1384881 MS.gene21811:CDS 50.0%
CAAAAGAGCAAGTCGTAGCG+TGG + chr5.2:1384509-1384528 MS.gene21811:CDS 50.0%
CACAATTCACACAACCGAGG+AGG + chr5.2:1384896-1384915 MS.gene21811:CDS 50.0%
GCATGAACAGCATCCACGAT+AGG - chr5.2:1384538-1384557 None:intergenic 50.0%
GGCACTTTCATGGTTACCAG+AGG + chr5.2:1385563-1385582 MS.gene21811:CDS 50.0%
GTGGATGCTGTTCATGCCAA+AGG + chr5.2:1384541-1384560 MS.gene21811:CDS 50.0%
TTGAGCAGTTTCAGAGACCC+CGG - chr5.2:1384318-1384337 None:intergenic 50.0%
!! GGGTCTCTGAAACTGCTCAA+GGG + chr5.2:1384318-1384337 MS.gene21811:CDS 50.0%
CGTAGCGTGGAAACCTATCG+TGG + chr5.2:1384522-1384541 MS.gene21811:CDS 55.0%
! TCTCAAAGGGCCTCTGAAGG+TGG + chr5.2:1384272-1384291 MS.gene21811:CDS 55.0%
!! GGGGTCTCTGAAACTGCTCA+AGG + chr5.2:1384317-1384336 MS.gene21811:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 1384029 1385781 1384029 ID=MS.gene21811
chr5.2 mRNA 1384029 1385781 1384029 ID=MS.gene21811.t1;Parent=MS.gene21811
chr5.2 exon 1384029 1384108 1384029 ID=MS.gene21811.t1.exon1;Parent=MS.gene21811.t1
chr5.2 CDS 1384029 1384108 1384029 ID=cds.MS.gene21811.t1;Parent=MS.gene21811.t1
chr5.2 exon 1384199 1384339 1384199 ID=MS.gene21811.t1.exon2;Parent=MS.gene21811.t1
chr5.2 CDS 1384199 1384339 1384199 ID=cds.MS.gene21811.t1;Parent=MS.gene21811.t1
chr5.2 exon 1384483 1384613 1384483 ID=MS.gene21811.t1.exon3;Parent=MS.gene21811.t1
chr5.2 CDS 1384483 1384613 1384483 ID=cds.MS.gene21811.t1;Parent=MS.gene21811.t1
chr5.2 exon 1384812 1384988 1384812 ID=MS.gene21811.t1.exon4;Parent=MS.gene21811.t1
chr5.2 CDS 1384812 1384988 1384812 ID=cds.MS.gene21811.t1;Parent=MS.gene21811.t1
chr5.2 exon 1385198 1385781 1385198 ID=MS.gene21811.t1.exon5;Parent=MS.gene21811.t1
chr5.2 CDS 1385198 1385781 1385198 ID=cds.MS.gene21811.t1;Parent=MS.gene21811.t1
Gene Sequence

>MS.gene21811

ATGGAAATTATGGTTGGTGATCGTGATCCCATTCCACTTCTTACTCCTTACAAGATGGGCAAATTCAATCTATCTCATAGGTATATAATATGTTTTAATTCCATTTATTATGCTTGCTTCAACCATAAAATTGTTTAAAATATTCACTCACCCTATTGATTTGATTTTAGAGTTGTTTTGGCACCGTTGACCAGACAAAGATCATACAACAACATTCCTCAACAGCATGCTGTCCTATATTATTCTCAAAGGGCCTCTGAAGGTGGTCTTCTCTTATCTGAAGCTACCGGGGTCTCTGAAACTGCTCAAGGGTAACTTGCAATTAATACAAACCAATTTCATAACTATCTTTAACTAACTTCAACTAAGTAATTCTAAATTCTAATGGTAAGTGCAACTATAGATCAATTATATGATGAATGCAATTCTGTTTTTTATTATATATTATGCGAAGGTATTCAAACACACCTGGCATATGGACAAAAGAGCAAGTCGTAGCGTGGAAACCTATCGTGGATGCTGTTCATGCCAAAGGTGCTACATTCTTCTGTCAAATTTGGCATGTTGGAAGGGTTTCTAATTCTGGTACGCATTTAGTTTTATCAAATTAGCAATTTTTTCTGATTTTTCAGTATTATTTTTAGGTGGGAATTGGAATTTTGCTACAGAATGATATTGATTTATGTTCACTAGTTTAATAGCAAATTTAAATGCATGTATTCTACACATTTATTATACACATTAATATTGTATTCTCATTTTCCATACAATTCTTCTAACCAGTTTATCAACCAAATGGACAAGCACCGATATCTTCTACAGACAAGCAACTAAGACAACGAATTGGAGGCGATGGTATTGAAATATCACAATTCACACAACCGAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGACTTTAGACTTACTGCAAGAAATGCTATTGAAGCTGGTAACTTCACTTATCTTTATCAATCTCTCCGAAAATTCAAAATGCTTCAATATAAGAGAGGCCAGAATAAGACGTAAACTAAAGACAAAAAAAATCACAAAATCCGACGTCTCTAAATTTCACATTTTTGTAACTCTAAATTTTCATAGTTATTTTGACTTCTTATAACAGGAAAACATTTTGTGTACTAATTGTGGTGCACATTGTAGGTTTTGATGGGGTTGAAATTCATGGGGCTACTGGCTACCTACTTGAGCAATTCATGAAAGATCAAGTGAATGACAGAACAGATGAATATGGCGGAACTCTTGAGAACCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTGTTGTAAATGAGATAGGTGCGGAAAAAGTTGGAATAAAATTATCACCTTTTTCAGATTTCGAAGAATGTGGAGACTCAAATCCGAAGGTATTGGGGCTTTACATGGTTAATGCCCTCAATAAATATGGTATTCTATATTGTCATATGGTAGAATCCATAAAGGAAACTATTGATGAAAAAACCGAATGTCTTCACAACTTGGTGCCAATGAGAAAGGCTTTCAATGGCACTTTCATGGTTACCAGAGGCTATGAAAGACAAGATGGGATCAATGCTATAGCTGAAAATAGGGCAGATCTTATTGCTTACGGTCGTTTATTCATAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTAATGCTCCCCTAAACAGGTATAATATGGAGACATTCTGCACTTCTGATCCAGTTCTTGGCTATACCGACTACCCTTTTCTTGAATGA
Protein sequence

>MS.gene21811.t1

MEIMVGDRDPIPLLTPYKMGKFNLSHRVVLAPLTRQRSYNNIPQQHAVLYYSQRASEGGLLLSEATGVSETAQGYSNTPGIWTKEQVVAWKPIVDAVHAKGATFFCQIWHVGRVSNSVYQPNGQAPISSTDKQLRQRIGGDGIEISQFTQPRRLRTEEIPNIVNDFRLTARNAIEAGFDGVEIHGATGYLLEQFMKDQVNDRTDEYGGTLENRCRFVLEIVEAVVNEIGAEKVGIKLSPFSDFEECGDSNPKVLGLYMVNALNKYGILYCHMVESIKETIDEKTECLHNLVPMRKAFNGTFMVTRGYERQDGINAIAENRADLIAYGRLFIANPDLPKRFALNAPLNRYNMETFCTSDPVLGYTDYPFLE