AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01969

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01969.t1 MTR_2g027660 100.000 211 0 0 1 211 1 211 7.47e-160 440
MS.gene01969.t1 MTR_6g021790 88.626 211 24 0 1 211 1 211 5.84e-140 390
MS.gene01969.t1 MTR_8g031680 68.720 211 65 1 1 211 1 210 5.91e-105 301
MS.gene01969.t1 MTR_8g031660 66.351 211 66 1 1 211 1 206 3.48e-104 299
MS.gene01969.t1 MTR_8g031870 78.049 164 36 0 1 164 1 164 6.10e-95 275
MS.gene01969.t1 MTR_8g031830 64.019 214 58 3 1 211 1 198 1.53e-94 274
MS.gene01969.t1 MTR_2g014990 48.095 210 105 2 3 211 10 216 2.54e-66 203
MS.gene01969.t1 MTR_4g088090 47.619 210 106 2 3 211 10 216 1.95e-65 201
MS.gene01969.t1 MTR_2g005510 53.073 179 84 0 3 181 12 190 1.31e-64 199
MS.gene01969.t1 MTR_4g079350 47.143 210 107 2 3 211 10 216 1.94e-64 199
MS.gene01969.t1 MTR_2g075950 46.479 213 104 2 3 211 10 216 2.58e-64 198
MS.gene01969.t1 MTR_1g052475 50.000 178 89 0 5 182 14 191 9.88e-64 197
MS.gene01969.t1 MTR_2g083860 55.621 169 75 0 3 171 10 178 2.48e-63 196
MS.gene01969.t1 MTR_0262s0050 53.333 165 77 0 5 169 14 178 4.85e-63 195
MS.gene01969.t1 MTR_2g090865 46.009 213 104 2 3 211 8 213 1.26e-61 191
MS.gene01969.t1 MTR_7g081700 45.933 209 101 1 3 211 5 201 3.27e-61 190
MS.gene01969.t1 MTR_4g064897 45.755 212 106 3 3 211 9 214 6.11e-61 189
MS.gene01969.t1 MTR_1g115325 46.890 209 104 3 3 210 12 214 6.89e-61 189
MS.gene01969.t1 MTR_8g089985 44.444 216 102 4 5 210 16 223 8.33e-61 189
MS.gene01969.t1 MTR_3g069510 46.226 212 106 2 3 211 9 215 9.43e-61 189
MS.gene01969.t1 MTR_3g086980 46.193 197 101 2 5 196 15 211 2.33e-60 188
MS.gene01969.t1 MTR_7g405790 43.541 209 114 2 5 211 14 220 5.86e-59 185
MS.gene01969.t1 MTR_7g100020 49.733 187 91 2 3 188 12 196 6.58e-59 184
MS.gene01969.t1 MTR_1g068740 45.455 209 107 4 3 210 12 214 7.75e-59 184
MS.gene01969.t1 MTR_8g006970 53.333 165 77 0 3 167 5 169 1.26e-58 182
MS.gene01969.t1 MTR_1g068730 44.976 209 108 4 3 210 12 214 2.83e-58 183
MS.gene01969.t1 MTR_8g006970 46.377 207 100 2 5 211 21 216 4.27e-58 182
MS.gene01969.t1 MTR_2g005500 50.296 169 84 0 3 171 6 174 5.15e-58 182
MS.gene01969.t1 MTR_8g036220 51.829 164 79 0 5 168 15 178 6.79e-58 182
MS.gene01969.t1 MTR_7g051940 44.928 207 111 1 5 211 12 215 1.09e-57 181
MS.gene01969.t1 MTR_8g027220 53.165 158 74 0 5 162 25 182 7.36e-57 180
MS.gene01969.t1 MTR_6g079550 45.894 207 110 1 5 211 11 215 5.01e-56 177
MS.gene01969.t1 MTR_1g078200 43.128 211 116 1 5 211 13 223 7.12e-56 177
MS.gene01969.t1 MTR_4g063160 45.024 211 106 4 3 210 12 215 8.83e-56 176
MS.gene01969.t1 MTR_8g107070 48.223 197 93 2 5 200 13 201 3.37e-52 169
MS.gene01969.t1 MTR_2g096550 45.714 175 93 2 2 174 11 185 4.55e-51 164
MS.gene01969.t1 MTR_7g103070 45.455 209 99 6 7 211 17 214 3.00e-50 162
MS.gene01969.t1 MTR_8g093740 42.925 212 104 6 3 210 10 208 5.03e-50 162
MS.gene01969.t1 MTR_1g029450 42.925 212 107 6 3 211 14 214 9.73e-49 159
MS.gene01969.t1 MTR_3g096350 49.375 160 78 3 3 160 9 167 2.32e-48 157
MS.gene01969.t1 MTR_8g031810 67.890 109 21 1 1 109 1 95 2.60e-48 153
MS.gene01969.t1 MTR_8g103550 43.210 162 92 0 8 169 11 172 7.62e-48 155
MS.gene01969.t1 MTR_7g117910 50.704 142 70 0 5 146 19 160 5.03e-47 154
MS.gene01969.t1 MTR_3g064390 43.312 157 89 0 8 164 12 168 1.04e-46 153
MS.gene01969.t1 MTR_2g102060 43.791 153 86 0 8 160 12 164 1.18e-46 153
MS.gene01969.t1 MTR_4g099470 43.678 174 86 1 38 211 16 177 1.38e-46 152
MS.gene01969.t1 MTR_5g076590 42.500 160 92 0 8 167 12 171 3.56e-46 151
MS.gene01969.t1 MTR_1g094220 42.208 154 88 1 8 160 33 186 3.96e-46 151
MS.gene01969.t1 MTR_1g094220 41.772 158 91 1 8 164 33 190 4.16e-46 151
MS.gene01969.t1 MTR_1g090717 49.693 163 77 4 2 160 11 172 5.70e-46 151
MS.gene01969.t1 MTR_1g094220 42.208 154 88 1 8 160 33 186 8.17e-46 151
MS.gene01969.t1 MTR_1g062760 48.235 170 83 4 3 169 11 178 1.42e-45 150
MS.gene01969.t1 MTR_1g094220 42.208 154 88 1 8 160 33 186 1.74e-45 151
MS.gene01969.t1 MTR_1g068730 53.543 127 59 0 3 129 12 138 6.71e-45 147
MS.gene01969.t1 MTR_1g068740 53.543 127 59 0 3 129 12 138 8.53e-45 148
MS.gene01969.t1 MTR_4g098950 34.286 210 119 2 7 210 10 206 6.00e-44 146
MS.gene01969.t1 MTR_8g090215 38.509 161 99 0 7 167 10 170 4.01e-43 144
MS.gene01969.t1 MTR_3g087160 35.912 181 111 1 7 182 10 190 9.78e-43 143
MS.gene01969.t1 MTR_5g013900 36.264 182 110 1 7 182 10 191 3.93e-42 141
MS.gene01969.t1 MTR_8g093740 41.243 177 88 5 38 210 11 175 1.18e-37 129
MS.gene01969.t1 MTR_3g096350 45.578 147 77 3 3 147 9 154 3.46e-37 127
MS.gene01969.t1 MTR_7g103070 42.353 170 81 4 47 211 1 158 1.60e-36 125
MS.gene01969.t1 MTR_3g096350 50.820 122 57 3 3 122 9 129 2.07e-36 125
MS.gene01969.t1 MTR_4g069850 36.683 199 116 4 6 197 8 203 2.88e-34 121
MS.gene01969.t1 MTR_8g092020 37.952 166 96 2 6 164 12 177 6.68e-34 120
MS.gene01969.t1 MTR_3g064390 40.800 125 74 0 8 132 12 136 1.20e-33 118
MS.gene01969.t1 MTR_1g097420 34.597 211 118 6 6 209 8 205 3.21e-33 119
MS.gene01969.t1 MTR_6g039490 38.095 168 97 3 6 166 8 175 1.10e-31 115
MS.gene01969.t1 MTR_2g101890 37.654 162 94 3 6 160 10 171 1.92e-31 114
MS.gene01969.t1 MTR_4g012940 37.654 162 94 3 6 160 8 169 5.28e-31 113
MS.gene01969.t1 MTR_2g005500 35.503 169 69 1 3 171 6 134 4.13e-29 107
MS.gene01969.t1 MTR_1g097420 33.333 210 118 7 7 209 38 232 4.84e-28 106
MS.gene01969.t1 MTR_2g090875 31.977 172 103 5 1 160 1 170 4.68e-25 97.4
MS.gene01969.t1 MTR_6g087980 32.558 172 102 5 1 160 1 170 4.54e-24 95.1
MS.gene01969.t1 MTR_4g088055 31.395 172 104 5 1 160 1 170 7.80e-24 94.0
MS.gene01969.t1 MTR_4g073250 32.558 172 102 6 1 160 1 170 1.99e-22 90.5
MS.gene01969.t1 MTR_3g078260 30.168 179 111 5 6 172 8 184 1.55e-21 88.6
MS.gene01969.t1 MTR_3g107707 31.646 158 105 2 7 164 14 168 3.65e-21 87.8
MS.gene01969.t1 MTR_3g107717 31.646 158 105 2 7 164 14 168 3.80e-21 87.8
MS.gene01969.t1 MTR_3g107713 31.646 158 105 2 7 164 14 168 4.27e-21 87.4
MS.gene01969.t1 MTR_8g075240 28.488 172 109 5 1 160 1 170 1.14e-20 85.9
MS.gene01969.t1 MTR_5g022600 27.907 172 110 5 1 160 1 170 5.94e-20 84.0
MS.gene01969.t1 MTR_1452s0010 38.043 92 57 0 26 117 1 92 7.96e-18 75.9
MS.gene01969.t1 MTR_1686s0010 35.870 92 59 0 26 117 1 92 1.04e-16 72.8
MS.gene01969.t1 MTR_2g078000 45.902 61 28 1 68 128 47 102 2.87e-14 66.6
MS.gene01969.t1 MTR_4g113620 27.329 161 105 3 7 167 14 162 3.56e-14 68.9
MS.gene01969.t1 MTR_3g078260 29.310 116 79 3 6 120 8 121 1.03e-13 66.2
MS.gene01969.t1 MTR_1g069245 45.333 75 40 1 38 112 125 198 1.57e-13 67.4
MS.gene01969.t1 MTR_1g059590 32.075 159 98 5 2 160 427 575 4.03e-12 65.1
MS.gene01969.t1 MTR_1g059590 32.075 159 98 5 2 160 394 542 4.04e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01969.t1 AT4G17170 97.143 210 6 0 1 210 1 210 7.64e-155 427
MS.gene01969.t1 AT4G35860 85.238 210 31 0 1 210 1 210 1.25e-136 381
MS.gene01969.t1 AT4G17160 78.673 211 37 2 1 210 1 204 8.15e-121 341
MS.gene01969.t1 AT4G35860 81.707 164 30 0 47 210 1 164 1.50e-100 288
MS.gene01969.t1 AT5G45750 46.479 213 103 2 3 211 10 215 7.10e-66 202
MS.gene01969.t1 AT5G60860 48.095 210 105 2 3 211 10 216 8.82e-66 202
MS.gene01969.t1 AT3G12160 47.393 211 101 2 5 210 14 219 2.30e-64 199
MS.gene01969.t1 AT4G18430 48.095 210 105 2 3 211 10 216 3.63e-64 198
MS.gene01969.t1 AT3G15060 47.368 209 108 1 3 211 10 216 7.95e-64 197
MS.gene01969.t1 AT2G33870 47.664 214 101 3 3 211 10 217 1.28e-63 196
MS.gene01969.t1 AT5G47960 48.077 208 105 2 5 210 14 220 3.99e-63 196
MS.gene01969.t1 AT1G28550 47.664 214 101 3 3 211 10 217 4.34e-63 195
MS.gene01969.t1 AT1G06400 47.418 213 101 2 3 211 10 215 1.64e-62 194
MS.gene01969.t1 AT4G39990 46.698 212 103 3 5 211 16 222 2.25e-62 194
MS.gene01969.t1 AT1G07410 45.755 212 105 2 3 211 9 213 3.31e-62 193
MS.gene01969.t1 AT4G18800 45.972 211 105 2 3 211 10 213 4.64e-62 192
MS.gene01969.t1 AT1G16920 53.293 167 78 0 3 169 10 176 7.72e-62 192
MS.gene01969.t1 AT1G02130 45.933 209 102 1 3 211 5 202 1.22e-61 191
MS.gene01969.t1 AT4G17530 46.411 209 100 2 3 211 5 201 1.45e-61 191
MS.gene01969.t1 AT1G09630 45.455 209 112 1 3 211 9 215 3.11e-61 191
MS.gene01969.t1 AT5G65270 46.479 213 106 3 5 211 16 226 1.00e-60 189
MS.gene01969.t1 AT3G46830 53.846 169 78 0 3 171 9 177 1.04e-60 189
MS.gene01969.t1 AT3G46830 53.846 169 78 0 3 171 9 177 1.04e-60 189
MS.gene01969.t1 AT5G59150 45.755 212 108 2 3 211 9 216 7.23e-60 187
MS.gene01969.t1 AT3G11730 47.847 209 98 3 3 210 5 203 8.13e-60 186
MS.gene01969.t1 AT5G47200 45.933 209 101 2 3 211 5 201 8.43e-60 186
MS.gene01969.t1 AT3G09900 45.714 210 108 3 3 211 12 216 9.41e-59 184
MS.gene01969.t1 AT5G59840 46.411 209 105 3 3 210 12 214 2.36e-58 183
MS.gene01969.t1 AT3G46060 46.411 209 105 3 3 210 12 214 2.84e-58 183
MS.gene01969.t1 AT3G46060 46.411 209 105 3 3 210 12 214 2.84e-58 183
MS.gene01969.t1 AT3G46060 46.411 209 105 3 3 210 12 214 2.84e-58 183
MS.gene01969.t1 AT2G43130 45.411 207 109 2 5 211 11 213 3.11e-58 183
MS.gene01969.t1 AT5G03520 45.714 210 106 3 3 211 12 214 3.89e-58 182
MS.gene01969.t1 AT3G53610 44.976 209 108 3 3 210 12 214 1.13e-57 181
MS.gene01969.t1 AT3G53610 44.976 209 108 3 3 210 12 214 1.13e-57 181
MS.gene01969.t1 AT3G53610 44.976 209 108 3 3 210 12 214 1.13e-57 181
MS.gene01969.t1 AT5G47520 46.047 215 101 3 5 211 13 220 1.03e-56 179
MS.gene01969.t1 AT3G07410 43.961 207 115 1 5 211 11 216 1.60e-56 178
MS.gene01969.t1 AT1G05810 42.788 208 116 2 5 211 11 216 3.28e-56 178
MS.gene01969.t1 AT2G31680 44.019 209 113 2 5 211 11 217 4.48e-56 177
MS.gene01969.t1 AT1G05810 42.788 208 116 2 5 211 57 262 8.57e-56 178
MS.gene01969.t1 AT1G18200 47.668 193 94 1 5 190 12 204 3.64e-55 176
MS.gene01969.t1 AT1G73640 51.497 167 81 0 5 171 12 178 2.09e-54 174
MS.gene01969.t1 AT1G01200 49.405 168 84 1 5 171 27 194 6.52e-54 172
MS.gene01969.t1 AT1G43890 51.875 160 74 3 3 160 10 168 8.05e-51 164
MS.gene01969.t1 AT1G43890 51.875 160 74 3 3 160 10 168 8.05e-51 164
MS.gene01969.t1 AT1G43890 51.875 160 74 3 3 160 10 168 8.05e-51 164
MS.gene01969.t1 AT5G45130 38.235 204 111 3 8 211 12 200 1.07e-46 153
MS.gene01969.t1 AT5G03530 49.123 171 80 4 3 169 10 177 1.52e-46 153
MS.gene01969.t1 AT5G03530 49.123 171 80 4 3 169 10 177 1.52e-46 153
MS.gene01969.t1 AT4G19640 42.675 157 90 0 8 164 12 168 4.44e-46 151
MS.gene01969.t1 AT5G45130 38.119 202 110 4 10 211 22 208 6.89e-46 151
MS.gene01969.t1 AT3G54840 41.558 154 89 1 8 160 35 188 1.49e-44 147
MS.gene01969.t1 AT3G54840 41.558 154 89 1 8 160 35 188 1.73e-44 147
MS.gene01969.t1 AT3G54840 41.447 152 88 1 10 160 3 154 2.94e-44 145
MS.gene01969.t1 AT5G59150 44.910 167 85 2 48 211 3 165 9.63e-44 144
MS.gene01969.t1 AT4G39890 40.123 162 96 1 7 167 10 171 1.12e-43 145
MS.gene01969.t1 AT5G10260 38.509 161 99 0 7 167 10 170 1.41e-43 145
MS.gene01969.t1 AT5G03520 43.023 172 90 3 41 211 40 204 2.59e-43 144
MS.gene01969.t1 AT2G22290 37.267 161 101 0 7 167 10 170 2.25e-41 139
MS.gene01969.t1 AT2G44610 34.615 182 113 1 7 182 10 191 1.90e-40 137
MS.gene01969.t1 AT5G64990 37.888 161 100 0 7 167 8 168 3.40e-40 136
MS.gene01969.t1 AT3G09910 43.429 175 92 4 3 173 10 181 1.39e-38 132
MS.gene01969.t1 AT3G09910 43.429 175 92 4 3 173 10 181 1.39e-38 132
MS.gene01969.t1 AT5G64990 36.310 168 100 1 7 167 8 175 2.03e-37 129
MS.gene01969.t1 AT3G09910 44.379 169 87 4 3 167 10 175 2.72e-37 129
MS.gene01969.t1 AT3G09910 44.379 169 87 4 3 167 10 175 2.72e-37 129
MS.gene01969.t1 AT3G09910 44.379 169 87 4 3 167 10 175 2.72e-37 129
MS.gene01969.t1 AT3G18820 40.123 162 90 3 6 160 8 169 2.54e-34 121
MS.gene01969.t1 AT2G21880 39.157 166 94 3 6 164 9 174 9.48e-34 120
MS.gene01969.t1 AT1G22740 37.423 163 95 3 6 161 8 170 3.37e-33 118
MS.gene01969.t1 AT4G09720 38.690 168 96 3 6 166 8 175 3.80e-33 118
MS.gene01969.t1 AT5G39620 38.182 165 95 3 7 164 6 170 4.88e-33 118
MS.gene01969.t1 AT4G19640 38.583 127 78 0 8 134 12 138 8.35e-33 115
MS.gene01969.t1 AT1G52280 38.889 162 92 3 6 160 8 169 1.02e-32 117
MS.gene01969.t1 AT1G49300 38.650 163 93 3 6 161 8 170 1.08e-32 117
MS.gene01969.t1 AT1G49300 38.650 163 93 3 6 161 8 170 1.08e-32 117
MS.gene01969.t1 AT4G19640 38.168 131 81 0 8 138 12 142 1.35e-32 116
MS.gene01969.t1 AT4G09720 38.728 173 94 4 6 166 8 180 4.16e-32 116
MS.gene01969.t1 AT4G09720 37.430 179 94 4 6 166 8 186 3.74e-31 114
MS.gene01969.t1 AT3G16100 37.654 162 94 3 6 160 8 169 6.06e-31 112
MS.gene01969.t1 AT2G21880 37.415 147 85 3 25 164 3 149 1.58e-25 98.2
MS.gene01969.t1 AT2G21880 37.415 147 85 3 25 164 3 149 1.58e-25 98.2
MS.gene01969.t1 AT5G46025 44.340 106 58 1 67 171 5 110 7.51e-25 94.4
MS.gene01969.t1 AT2G21880 34.337 166 94 4 6 164 9 166 5.14e-24 94.7
MS.gene01969.t1 AT4G28950 31.765 170 104 5 1 160 1 168 6.67e-24 94.7
MS.gene01969.t1 AT4G35020 33.140 172 101 5 1 160 1 170 8.29e-24 94.4
MS.gene01969.t1 AT4G35020 33.140 172 101 5 1 160 1 170 8.29e-24 94.4
MS.gene01969.t1 AT4G35020 33.140 172 101 5 1 160 1 170 8.29e-24 94.4
MS.gene01969.t1 AT4G09720 38.235 136 77 3 38 166 6 141 3.15e-23 92.0
MS.gene01969.t1 AT4G09720 38.235 136 77 3 38 166 6 141 3.15e-23 92.0
MS.gene01969.t1 AT4G09720 38.235 136 77 3 38 166 6 141 3.15e-23 92.0
MS.gene01969.t1 AT1G75840 30.814 172 105 5 1 160 1 170 5.16e-23 92.0
MS.gene01969.t1 AT5G45970 30.814 172 105 5 1 160 1 170 1.02e-22 91.3
MS.gene01969.t1 AT2G44690 31.737 167 100 5 6 160 18 182 2.37e-22 90.5
MS.gene01969.t1 AT1G20090 29.940 167 103 5 6 160 5 169 5.98e-22 89.4
MS.gene01969.t1 AT5G20020 31.646 158 105 2 7 164 14 168 3.33e-21 87.8
MS.gene01969.t1 AT5G55190 31.646 158 105 2 7 164 14 168 4.20e-21 87.8
MS.gene01969.t1 AT5G20010 31.646 158 105 2 7 164 14 168 4.33e-21 87.4
MS.gene01969.t1 AT3G51300 28.488 172 109 5 1 160 1 170 8.63e-21 86.3
MS.gene01969.t1 AT3G48040 30.409 171 105 5 2 160 4 172 1.15e-20 86.3
MS.gene01969.t1 AT5G55080 30.435 161 109 2 7 167 14 171 2.43e-20 85.5
MS.gene01969.t1 AT2G17800 28.488 172 109 5 1 160 1 170 6.91e-20 84.0
MS.gene01969.t1 AT2G17800 28.488 172 109 5 1 160 1 170 6.91e-20 84.0
MS.gene01969.t1 AT5G62880 29.825 171 106 5 2 160 4 172 8.51e-20 84.0
MS.gene01969.t1 AT4G35950 27.907 172 110 5 1 160 1 170 3.37e-19 82.0
MS.gene01969.t1 AT5G62880 29.518 166 103 5 6 159 8 171 4.47e-18 79.0
MS.gene01969.t1 AT3G48040 29.814 161 99 5 6 154 8 166 6.52e-18 78.2
MS.gene01969.t1 AT4G35020 33.058 121 78 3 1 120 1 119 5.62e-16 72.4
MS.gene01969.t1 AT4G35020 33.058 121 78 3 1 120 1 119 5.62e-16 72.4
MS.gene01969.t1 AT4G08190 48.438 64 30 1 97 160 67 127 3.45e-12 61.6
MS.gene01969.t1 AT3G51290 26.400 125 79 4 48 160 648 771 8.31e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCAATCAAGTTGCAAATA+TGG 0.213769 2.2:-59714039 MS.gene01969:CDS
TTCATATGCTTGCAGTCTTA+TGG 0.237130 2.2:-59711660 MS.gene01969:intron
TTGACCATCGGTGTTGAATT+TGG 0.325534 2.2:-59714088 MS.gene01969:CDS
GTAGGGTATGGTGGAATTCC+TGG 0.327891 2.2:-59711630 MS.gene01969:CDS
TACATCATCATCGGCGATAC+TGG 0.349931 2.2:-59714896 MS.gene01969:intron
GGCCCTTCTGCTGCGGGTGG+AGG 0.361206 2.2:-59711588 MS.gene01969:CDS
CAGCCTCCACCCGCAGCAGA+AGG 0.362111 2.2:+59711585 None:intergenic
TCCCATATTTGCAACTTGAT+TGG 0.379893 2.2:+59714037 None:intergenic
GGTGGAATTCCTGGACCATC+TGG 0.382675 2.2:-59711621 MS.gene01969:CDS
AGGGATGGCCCTTCTGCTGC+GGG 0.401144 2.2:-59711594 MS.gene01969:CDS
GCCAATCAAGTTGCAAATAT+GGG 0.406809 2.2:-59714038 MS.gene01969:CDS
AACAGTTTGCAAAGGAGAAC+GGG 0.430066 2.2:-59712174 MS.gene01969:CDS
CATTTAATCACTTAGCTAGC+TGG 0.445587 2.2:-59712300 MS.gene01969:CDS
CAGTCTTATGGAATAAAAGT+AGG 0.450766 2.2:-59711648 MS.gene01969:CDS
CCGATGGTCAAGTCATGAAC+AGG 0.483056 2.2:+59714100 None:intergenic
AATATGACAATTATGCTGAT+TGG 0.496339 2.2:-59712247 MS.gene01969:CDS
TCATATTACAGAGGAGCTGC+AGG 0.498390 2.2:-59713020 MS.gene01969:CDS
TCCTGGACCATCTGGAGGTA+GGG 0.509121 2.2:-59711613 MS.gene01969:CDS
GGACCATCTGGAGGTAGGGA+TGG 0.519816 2.2:-59711609 MS.gene01969:CDS
GGAATAAAAGTAGGGTATGG+TGG 0.519922 2.2:-59711639 MS.gene01969:CDS
GATGGCCCTTCTGCTGCGGG+TGG 0.524107 2.2:-59711591 MS.gene01969:CDS
CAAGTTGCAAATATGGGATA+CGG 0.527831 2.2:-59714032 MS.gene01969:intron
TATGGAATAAAAGTAGGGTA+TGG 0.533226 2.2:-59711642 MS.gene01969:CDS
TAGGGATGGCCCTTCTGCTG+CGG 0.533754 2.2:-59711595 MS.gene01969:CDS
GAACAGTTTGCAAAGGAGAA+CGG 0.544908 2.2:-59712175 MS.gene01969:CDS
AGCCTCCACCCGCAGCAGAA+GGG 0.547873 2.2:+59711586 None:intergenic
AACTGCTCAGAATGTTGAAG+AGG 0.551651 2.2:-59712125 MS.gene01969:intron
CTCTTCAAATACATCATCAT+CGG 0.552415 2.2:-59714905 MS.gene01969:CDS
CGGGCTGTAAGCACGGAAGA+AGG 0.556486 2.2:-59712199 MS.gene01969:CDS
TGACCTTGTGATAGATCTGA+AGG 0.556542 2.2:+59713040 None:intergenic
TCCCTACCTCCAGATGGTCC+AGG 0.559719 2.2:+59711612 None:intergenic
CTTGATTGGCTTGTTATCGA+TGG 0.560209 2.2:+59714051 None:intergenic
TAATCACTTAGCTAGCTGGT+TGG 0.562132 2.2:-59712296 MS.gene01969:CDS
GTGTGATCTTGCTCACAGAC+GGG 0.563085 2.2:-59712218 MS.gene01969:CDS
TGCTTGTTTATGATATAACC+AGG 0.573499 2.2:-59712992 MS.gene01969:intron
AGTCTTATGGAATAAAAGTA+GGG 0.573741 2.2:-59711647 MS.gene01969:CDS
CGATGATGATGTATTTGAAG+AGG 0.579909 2.2:+59714906 None:intergenic
AGTGTGATCTTGCTCACAGA+CGG 0.590726 2.2:-59712219 MS.gene01969:CDS
TCACAGACGGGCTGTAAGCA+CGG 0.591546 2.2:-59712206 MS.gene01969:CDS
CCTGTTCATGACTTGACCAT+CGG 0.602736 2.2:-59714100 MS.gene01969:CDS
TTCCTGGACCATCTGGAGGT+AGG 0.607438 2.2:-59711614 MS.gene01969:CDS
CTAGCTGGTTGGAAGATGCA+AGG 0.612086 2.2:-59712285 MS.gene01969:CDS
TCGGTGTTGAATTTGGTGCT+AGG 0.624612 2.2:-59714081 MS.gene01969:CDS
AGCACCAAATTCAACACCGA+TGG 0.625004 2.2:+59714084 None:intergenic
AGAAGGTGAACAGTTTGCAA+AGG 0.650461 2.2:-59712182 MS.gene01969:CDS
GGAATTCCTGGACCATCTGG+AGG 0.651030 2.2:-59711618 MS.gene01969:CDS
GGGCCATCCCTACCTCCAGA+TGG 0.652411 2.2:+59711606 None:intergenic
AATCCTTCAGATCTATCACA+AGG 0.690302 2.2:-59713043 MS.gene01969:CDS
ATCACAAGGTCATATTACAG+AGG 0.702668 2.2:-59713029 MS.gene01969:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTGTATTATAAAAATAA+AGG + chr2.2:59714731-59714750 None:intergenic 10.0%
!! TATATACATGAAATAAATTA+TGG - chr2.2:59712969-59712988 MS.gene01969:intron 10.0%
!! TATTATATTTACATAGTTTA+GGG - chr2.2:59712045-59712064 MS.gene01969:intron 10.0%
!! TTAATGTAAATAACTAAATA+AGG - chr2.2:59714128-59714147 MS.gene01969:CDS 10.0%
!! TTATTATATTTACATAGTTT+AGG - chr2.2:59712044-59712063 MS.gene01969:intron 10.0%
!!! ATTTATTCATTTTTTTTTCA+GGG - chr2.2:59711733-59711752 MS.gene01969:intron 10.0%
!! ATTAACAAAATACAAATCAA+AGG + chr2.2:59712243-59712262 None:intergenic 15.0%
!! CTTCATTATTAATATCATTA+AGG - chr2.2:59714677-59714696 MS.gene01969:intron 15.0%
!! TAAATACAATTTCATAACTT+GGG - chr2.2:59713890-59713909 MS.gene01969:intron 15.0%
!! TTAAATACAATTTCATAACT+TGG - chr2.2:59713889-59713908 MS.gene01969:intron 15.0%
!!! AAAGATTTTATCTAATAGAT+GGG - chr2.2:59713054-59713073 MS.gene01969:CDS 15.0%
!!! ATTATTTTATGTTGATTCAT+TGG - chr2.2:59712703-59712722 MS.gene01969:intron 15.0%
!!! GAAAATAGTTATTGTATTTT+GGG + chr2.2:59713568-59713587 None:intergenic 15.0%
!!! GATTTATTCATTTTTTTTTC+AGG - chr2.2:59711732-59711751 MS.gene01969:intron 15.0%
!!! TAATTATGAAGTTTAAGTTT+TGG - chr2.2:59712259-59712278 MS.gene01969:CDS 15.0%
!!! TGAAAATAGTTATTGTATTT+TGG + chr2.2:59713569-59713588 None:intergenic 15.0%
!! AAAAAATGAATAAATCCGAT+CGG + chr2.2:59711728-59711747 None:intergenic 20.0%
!! AATAAAAAAGAGACTAGAAA+AGG + chr2.2:59711645-59711664 None:intergenic 20.0%
!! ATAATGAGAACCTAATTATT+TGG - chr2.2:59712916-59712935 MS.gene01969:intron 20.0%
!! ATCTCTGTTTATATATTAAG+TGG + chr2.2:59713246-59713265 None:intergenic 20.0%
!! CATATAAAAACTCAAAATGA+CGG + chr2.2:59713997-59714016 None:intergenic 20.0%
!! GAAACAAAAGTAACAATAAA+GGG + chr2.2:59712162-59712181 None:intergenic 20.0%
!! TAATATCATTAAGGATTTGT+GGG - chr2.2:59714686-59714705 MS.gene01969:intron 20.0%
!! TAATGAGAACCTAATTATTT+GGG - chr2.2:59712917-59712936 MS.gene01969:intron 20.0%
!! TCCAACAAAAATCAATTTAT+TGG - chr2.2:59713958-59713977 MS.gene01969:intron 20.0%
!! TGAAACAAAAGTAACAATAA+AGG + chr2.2:59712163-59712182 None:intergenic 20.0%
!! TTAATATCATTAAGGATTTG+TGG - chr2.2:59714685-59714704 MS.gene01969:intron 20.0%
!!! ATAGCTTTTAGATTTTTTCT+AGG - chr2.2:59713917-59713936 MS.gene01969:intron 20.0%
!!! ATATGATTTGCAAATCATTT+TGG - chr2.2:59713840-59713859 MS.gene01969:intron 20.0%
!!! GAAAGATTTTATCTAATAGA+TGG - chr2.2:59713053-59713072 MS.gene01969:CDS 20.0%
!!! TAGCTTTTAGATTTTTTCTA+GGG - chr2.2:59713918-59713937 MS.gene01969:intron 20.0%
!!! TCCAATAAATTGATTTTTGT+TGG + chr2.2:59713962-59713981 None:intergenic 20.0%
!!! TGATATTTTATGGACTAAAT+TGG - chr2.2:59712086-59712105 MS.gene01969:intron 20.0%
!!! TTTTTTGAAAAAAATTGTGC+AGG - chr2.2:59712323-59712342 MS.gene01969:intron 20.0%
! AAAACTATCCATTTGAAAAC+TGG + chr2.2:59713116-59713135 None:intergenic 25.0%
! AATATGACAATTATGCTGAT+TGG - chr2.2:59714248-59714267 MS.gene01969:intron 25.0%
! AATGAGAACCTAATTATTTG+GGG - chr2.2:59712918-59712937 MS.gene01969:intron 25.0%
! ATAATCATTCTATGCTGAAA+AGG + chr2.2:59713330-59713349 None:intergenic 25.0%
! ATAGGTTAACCAATAATTGT+TGG + chr2.2:59711932-59711951 None:intergenic 25.0%
! ATATACAAAAAGATTCAGGA+TGG - chr2.2:59714573-59714592 MS.gene01969:intron 25.0%
! ATGAAGTGATAAAACAAACA+AGG + chr2.2:59714663-59714682 None:intergenic 25.0%
! ATTAAAGAAGCAATACATTG+TGG - chr2.2:59713595-59713614 MS.gene01969:intron 25.0%
! ATTTCATATAATCCTTGAGA+TGG + chr2.2:59713792-59713811 None:intergenic 25.0%
! CACAAAATTTCAGAATAACA+AGG + chr2.2:59713187-59713206 None:intergenic 25.0%
! CTCATTATCAACAATGTAAA+TGG + chr2.2:59712904-59712923 None:intergenic 25.0%
! GAACTTATTCACTATATTTC+AGG - chr2.2:59713420-59713439 MS.gene01969:intron 25.0%
! GACATAAATTTCAATATGAG+AGG + chr2.2:59713163-59713182 None:intergenic 25.0%
! GCAAATCATATTTCAAAGAT+TGG + chr2.2:59713831-59713850 None:intergenic 25.0%
! TAAATAATCTCACCAAAGTT+TGG - chr2.2:59713697-59713716 MS.gene01969:intron 25.0%
! TAACTAACTCCAACAATTAT+TGG - chr2.2:59711920-59711939 MS.gene01969:CDS 25.0%
! TAATCATTCTATGCTGAAAA+GGG + chr2.2:59713329-59713348 None:intergenic 25.0%
! TAGTAACTATATTGAGTAGT+AGG - chr2.2:59712754-59712773 MS.gene01969:intron 25.0%
! TTAAAGAAGCAATACATTGT+GGG - chr2.2:59713596-59713615 MS.gene01969:intron 25.0%
! TTTATAAATTGTGAAGCTGA+AGG - chr2.2:59713393-59713412 MS.gene01969:intron 25.0%
! TTTATACATAACAGGTTCTT+AGG - chr2.2:59714464-59714483 MS.gene01969:intron 25.0%
!! AGTCAGATTTTATACATAAC+AGG - chr2.2:59714456-59714475 MS.gene01969:intron 25.0%
!! AGTCTTATGGAATAAAAGTA+GGG - chr2.2:59714848-59714867 MS.gene01969:intron 25.0%
!! AGTTTTTGATGTATCAAATG+AGG - chr2.2:59714596-59714615 MS.gene01969:intron 25.0%
!! ATCCTGAATCTTTTTGTATA+TGG + chr2.2:59714574-59714593 None:intergenic 25.0%
!!! GAGTATTCTTTGAAACAAAA+TGG + chr2.2:59712845-59712864 None:intergenic 25.0%
!!! TATTGGACAATTTTGATACA+TGG - chr2.2:59714069-59714088 MS.gene01969:CDS 25.0%
!!! TTTGAGTTTTTATATGCCTT+GGG - chr2.2:59714001-59714020 MS.gene01969:intron 25.0%
!!! TTTTGAGTTTTTATATGCCT+TGG - chr2.2:59714000-59714019 MS.gene01969:intron 25.0%
AATGATTATCCAGATTTCAG+TGG - chr2.2:59713341-59713360 MS.gene01969:intron 30.0%
AGTATGAACATTGAACAAGT+TGG + chr2.2:59712531-59712550 None:intergenic 30.0%
AGTATGTTGTTCCATGAAAT+TGG + chr2.2:59714048-59714067 None:intergenic 30.0%
ATAAAATCTGACTTTCCTTG+TGG + chr2.2:59714449-59714468 None:intergenic 30.0%
ATAATAGAAGTCAAAGCTTG+AGG + chr2.2:59713532-59713551 None:intergenic 30.0%
CAAATCATCCCCAAATAATT+AGG + chr2.2:59712929-59712948 None:intergenic 30.0%
CAACCAAATAGAAATCTTCA+GGG + chr2.2:59712662-59712681 None:intergenic 30.0%
CATGGAACAACATACTATAT+TGG - chr2.2:59714052-59714071 MS.gene01969:CDS 30.0%
CTCTTCAAATACATCATCAT+CGG - chr2.2:59711590-59711609 MS.gene01969:CDS 30.0%
CTTATTCACTATATTTCAGG+CGG - chr2.2:59713423-59713442 MS.gene01969:intron 30.0%
GACCATATACAAAAAGATTC+AGG - chr2.2:59714569-59714588 MS.gene01969:intron 30.0%
TAAAATCTGACTTTCCTTGT+GGG + chr2.2:59714448-59714467 None:intergenic 30.0%
TAAAGAAGCAATACATTGTG+GGG - chr2.2:59713597-59713616 MS.gene01969:intron 30.0%
TATATTGAGTAGTAGGCTTA+GGG - chr2.2:59712761-59712780 MS.gene01969:intron 30.0%
TATGGAATAAAAGTAGGGTA+TGG - chr2.2:59714853-59714872 MS.gene01969:intron 30.0%
TCAACCAAATAGAAATCTTC+AGG + chr2.2:59712663-59712682 None:intergenic 30.0%
TCTGTGTATGTTTCAAGAAA+AGG - chr2.2:59714748-59714767 MS.gene01969:intron 30.0%
TGCTTGTTTATGATATAACC+AGG - chr2.2:59713503-59713522 MS.gene01969:intron 30.0%
TGGAAACATTGTTCATTTGT+TGG - chr2.2:59713364-59713383 MS.gene01969:intron 30.0%
TTATTCACTATATTTCAGGC+GGG - chr2.2:59713424-59713443 MS.gene01969:intron 30.0%
! AATATAACCTATCCTTTTGC+AGG - chr2.2:59714527-59714546 MS.gene01969:intron 30.0%
! ACAGTGAAGTAATGTTCTTT+TGG + chr2.2:59711986-59712005 None:intergenic 30.0%
! ACTTGTTTCTTGAATCAGAA+GGG + chr2.2:59714804-59714823 None:intergenic 30.0%
! AGAGAGAAGGTGATATTTTA+TGG - chr2.2:59712076-59712095 MS.gene01969:intron 30.0%
! ATTCAATTTTGTTACTGCGA+TGG - chr2.2:59712135-59712154 MS.gene01969:CDS 30.0%
! CAGTCTTATGGAATAAAAGT+AGG - chr2.2:59714847-59714866 MS.gene01969:intron 30.0%
! TTTTTATGAATGCCTGCAAA+AGG + chr2.2:59714542-59714561 None:intergenic 30.0%
!! TGAAGTTTAAGTTTTGGTAG+TGG - chr2.2:59712265-59712284 MS.gene01969:CDS 30.0%
!! TTCTTTGAAACAAAATGGCA+TGG + chr2.2:59712840-59712859 None:intergenic 30.0%
!!! AGAGAAGATCATAGTTTTGA+TGG - chr2.2:59712109-59712128 MS.gene01969:intron 30.0%
!!! GGTTCTTAGGTTGAATATTT+TGG - chr2.2:59714477-59714496 MS.gene01969:intron 30.0%
AAAGAAGCAATACATTGTGG+GGG - chr2.2:59713598-59713617 MS.gene01969:intron 35.0%
AAATTTCACAGAACCTCATC+TGG + chr2.2:59713287-59713306 None:intergenic 35.0%
AACAAAATTTGACCCAGATG+AGG - chr2.2:59713271-59713290 MS.gene01969:intron 35.0%
AAGAATCAAAACCGCTAAGT+GGG - chr2.2:59712189-59712208 MS.gene01969:CDS 35.0%
AATCCTTCAGATCTATCACA+AGG - chr2.2:59713452-59713471 MS.gene01969:intron 35.0%
AATTTCACAGAACCTCATCT+GGG + chr2.2:59713286-59713305 None:intergenic 35.0%
ACTATCGTATGATCTTCCTT+AGG - chr2.2:59713734-59713753 MS.gene01969:intron 35.0%
ACTTCACTGTGTTAATAGCA+GGG - chr2.2:59711996-59712015 MS.gene01969:intron 35.0%
AGGCATTCATAAAAACAGCT+GGG - chr2.2:59714547-59714566 MS.gene01969:intron 35.0%
AGTGTGATCTATAGTTTCCT+TGG - chr2.2:59712870-59712889 MS.gene01969:intron 35.0%
ATCACAAGGTCATATTACAG+AGG - chr2.2:59713466-59713485 MS.gene01969:intron 35.0%
CAAGTTGCAAATATGGGATA+CGG - chr2.2:59712463-59712482 MS.gene01969:intron 35.0%
CAGACTACAGATATGACAAA+CGG + chr2.2:59712799-59712818 None:intergenic 35.0%
CATTTAATCACTTAGCTAGC+TGG - chr2.2:59714195-59714214 MS.gene01969:intron 35.0%
CTATATTGAGTAGTAGGCTT+AGG - chr2.2:59712760-59712779 MS.gene01969:intron 35.0%
CTATCCATTTGAAAACTGGA+AGG + chr2.2:59713112-59713131 None:intergenic 35.0%
CTATCGTATGATCTTCCTTA+GGG - chr2.2:59713735-59713754 MS.gene01969:intron 35.0%
GAAAAAAATTGTGCAGGAGT+TGG - chr2.2:59712329-59712348 MS.gene01969:intron 35.0%
GTGATGATCATTTCAATCCA+GGG - chr2.2:59712623-59712642 MS.gene01969:intron 35.0%
GTGTGATCTATAGTTTCCTT+GGG - chr2.2:59712871-59712890 MS.gene01969:intron 35.0%
TAAGAATCAAAACCGCTAAG+TGG - chr2.2:59712188-59712207 MS.gene01969:CDS 35.0%
TACTTCACTGTGTTAATAGC+AGG - chr2.2:59711995-59712014 MS.gene01969:intron 35.0%
TAGGGACTAAATTAGAGAGA+AGG - chr2.2:59712063-59712082 MS.gene01969:intron 35.0%
TCACCCTGAAGATTTCTATT+TGG - chr2.2:59712656-59712675 MS.gene01969:intron 35.0%
TCCCATATTTGCAACTTGAT+TGG + chr2.2:59712461-59712480 None:intergenic 35.0%
TCTAAACTCATCTTCTCAAG+TGG - chr2.2:59713014-59713033 MS.gene01969:CDS 35.0%
TGGAGTTAGTTATCAGAACT+CGG + chr2.2:59711912-59711931 None:intergenic 35.0%
TGTGATCTATAGTTTCCTTG+GGG - chr2.2:59712872-59712891 MS.gene01969:intron 35.0%
TGTGATGATCATTTCAATCC+AGG - chr2.2:59712622-59712641 MS.gene01969:intron 35.0%
TTCAACTATTACCCACTTAG+CGG + chr2.2:59712203-59712222 None:intergenic 35.0%
TTCATATGCTTGCAGTCTTA+TGG - chr2.2:59714835-59714854 MS.gene01969:intron 35.0%
TTTGAGTGCATCCAATTTCA+TGG - chr2.2:59714034-59714053 MS.gene01969:CDS 35.0%
! AGCCAATCAAGTTGCAAATA+TGG - chr2.2:59712456-59712475 MS.gene01969:intron 35.0%
! CGATGATGATGTATTTGAAG+AGG + chr2.2:59711592-59711611 None:intergenic 35.0%
! CGTTTCTAGGAATTGGTAAT+TGG - chr2.2:59712598-59712617 MS.gene01969:intron 35.0%
! CTCTCTTTTCTTCCAAACTT+TGG + chr2.2:59713712-59713731 None:intergenic 35.0%
! GACTTGTTTCTTGAATCAGA+AGG + chr2.2:59714805-59714824 None:intergenic 35.0%
! GCCAATCAAGTTGCAAATAT+GGG - chr2.2:59712457-59712476 MS.gene01969:intron 35.0%
! TAATAGATGGGAGTGTAGTT+TGG - chr2.2:59713066-59713085 MS.gene01969:intron 35.0%
! TGAACATTGAACAAGTTGGA+AGG + chr2.2:59712527-59712546 None:intergenic 35.0%
! TGTTTCTCGTTTCTAGGAAT+TGG - chr2.2:59712591-59712610 MS.gene01969:intron 35.0%
! TTCTTTTGGTAAAAACCCTC+CGG + chr2.2:59711972-59711991 None:intergenic 35.0%
!! AAAACTGGAAGGTACCTTAA+GGG + chr2.2:59713101-59713120 None:intergenic 35.0%
!! TATTGCTGTTTCTCGTTTCT+AGG - chr2.2:59712585-59712604 MS.gene01969:intron 35.0%
!! TGGCTTTGTAGATGTAAGAT+AGG - chr2.2:59712989-59713008 MS.gene01969:intron 35.0%
AACAGTTTGCAAAGGAGAAC+GGG - chr2.2:59714321-59714340 MS.gene01969:intron 40.0%
AACTGCTCAGAATGTTGAAG+AGG - chr2.2:59714370-59714389 MS.gene01969:intron 40.0%
ACTACAGATATGACAAACGG+CGG + chr2.2:59712796-59712815 None:intergenic 40.0%
AGAAGGTGAACAGTTTGCAA+AGG - chr2.2:59714313-59714332 MS.gene01969:intron 40.0%
AGGGTGAAATTAAAAGACCC+TGG + chr2.2:59712643-59712662 None:intergenic 40.0%
ATGAATGCCTGCAAAAGGAT+AGG + chr2.2:59714537-59714556 None:intergenic 40.0%
ATGTTTCCACCACTGAAATC+TGG + chr2.2:59713353-59713372 None:intergenic 40.0%
ATTCTATGCTGAAAAGGGAC+TGG + chr2.2:59713324-59713343 None:intergenic 40.0%
CAGGCATTCATAAAAACAGC+TGG - chr2.2:59714546-59714565 MS.gene01969:intron 40.0%
CTCCCTCCTATTCATAAACA+CGG + chr2.2:59714174-59714193 None:intergenic 40.0%
GAAATCGAAGCTGGAAATGT+TGG + chr2.2:59711706-59711725 None:intergenic 40.0%
GAACAGTTTGCAAAGGAGAA+CGG - chr2.2:59714320-59714339 MS.gene01969:intron 40.0%
GACCGTGTTTATGAATAGGA+GGG - chr2.2:59714169-59714188 MS.gene01969:intron 40.0%
GATTATCCAGATTTCAGTGG+TGG - chr2.2:59713344-59713363 MS.gene01969:intron 40.0%
GGAATAAAAGTAGGGTATGG+TGG - chr2.2:59714856-59714875 MS.gene01969:intron 40.0%
GGAGTTAGTTATCAGAACTC+GGG + chr2.2:59711911-59711930 None:intergenic 40.0%
GTATGATCTTCCTTAGGGTT+AGG - chr2.2:59713740-59713759 MS.gene01969:intron 40.0%
GTGATCTATAGTTTCCTTGG+GGG - chr2.2:59712873-59712892 MS.gene01969:intron 40.0%
TAATCACTTAGCTAGCTGGT+TGG - chr2.2:59714199-59714218 MS.gene01969:intron 40.0%
TCAAAAAACCCAAGTCCTCT+CGG + chr2.2:59712300-59712319 None:intergenic 40.0%
TCATCTTCTCAAGTGGTCAT+GGG - chr2.2:59713021-59713040 MS.gene01969:CDS 40.0%
TCCTATTCATAAACACGGTC+AGG + chr2.2:59714169-59714188 None:intergenic 40.0%
TCCTGACCGTGTTTATGAAT+AGG - chr2.2:59714165-59714184 MS.gene01969:intron 40.0%
TGACCGTGTTTATGAATAGG+AGG - chr2.2:59714168-59714187 MS.gene01969:intron 40.0%
TGACCTTGTGATAGATCTGA+AGG + chr2.2:59713458-59713477 None:intergenic 40.0%
TGATCTATAGTTTCCTTGGG+GGG - chr2.2:59712874-59712893 MS.gene01969:intron 40.0%
! ATGGGAGTGTAGTTTGGTAA+TGG - chr2.2:59713072-59713091 MS.gene01969:intron 40.0%
! ATTCTGAGCAGTTTTTGCTG+AGG + chr2.2:59714363-59714382 None:intergenic 40.0%
! GGTACCTTCCAGTTTTCAAA+TGG - chr2.2:59713105-59713124 MS.gene01969:intron 40.0%
! TAACCTATGCCCTTTTACCA+AGG - chr2.2:59711944-59711963 MS.gene01969:CDS 40.0%
!! CTTGATTGGCTTGTTATCGA+TGG + chr2.2:59712447-59712466 None:intergenic 40.0%
!! GAAAACTGGAAGGTACCTTA+AGG + chr2.2:59713102-59713121 None:intergenic 40.0%
!! TTGACCATCGGTGTTGAATT+TGG - chr2.2:59712407-59712426 MS.gene01969:intron 40.0%
!! TTTGGTAATGGTGACCCTTA+AGG - chr2.2:59713084-59713103 MS.gene01969:intron 40.0%
AAGTGGTCATGGGGTATGAA+TGG - chr2.2:59713031-59713050 MS.gene01969:CDS 45.0%
AATCTGACTTTCCTTGTGGG+AGG + chr2.2:59714445-59714464 None:intergenic 45.0%
AATTCATGCCGAGAGGACTT+GGG - chr2.2:59712289-59712308 MS.gene01969:CDS 45.0%
AGCACCAAATTCAACACCGA+TGG + chr2.2:59712414-59712433 None:intergenic 45.0%
AGGTGTAGTTCCTAACCCTA+AGG + chr2.2:59713753-59713772 None:intergenic 45.0%
AGTCAAAGCTTGAGGATACC+TGG + chr2.2:59713524-59713543 None:intergenic 45.0%
AGTGTGATCTTGCTCACAGA+CGG - chr2.2:59714276-59714295 MS.gene01969:intron 45.0%
ATCTGACTTTCCTTGTGGGA+GGG + chr2.2:59714444-59714463 None:intergenic 45.0%
CATCTTCTCAAGTGGTCATG+GGG - chr2.2:59713022-59713041 MS.gene01969:CDS 45.0%
CCTGTTCATGACTTGACCAT+CGG - chr2.2:59712395-59712414 MS.gene01969:intron 45.0%
CTCAAAACATGCAACTCCCA+AGG + chr2.2:59714020-59714039 None:intergenic 45.0%
CTCATCTTCTCAAGTGGTCA+TGG - chr2.2:59713020-59713039 MS.gene01969:CDS 45.0%
GGGGGATGATGAAAATCACT+GGG - chr2.2:59713616-59713635 MS.gene01969:intron 45.0%
TACATCATCATCGGCGATAC+TGG - chr2.2:59711599-59711618 MS.gene01969:CDS 45.0%
TCACTGGGACAAGTCATGAA+TGG - chr2.2:59713631-59713650 MS.gene01969:intron 45.0%
TCATATTACAGAGGAGCTGC+AGG - chr2.2:59713475-59713494 MS.gene01969:intron 45.0%
TGGGGGATGATGAAAATCAC+TGG - chr2.2:59713615-59713634 MS.gene01969:intron 45.0%
TTCCAGCTTCGATTTCCGAT+CGG - chr2.2:59711710-59711729 MS.gene01969:intron 45.0%
! ATGCCCTTTTACCAAGGAAC+CGG - chr2.2:59711950-59711969 MS.gene01969:intron 45.0%
! GTTCCTTGGTAAAAGGGCAT+AGG + chr2.2:59711950-59711969 None:intergenic 45.0%
!! TCGGTGTTGAATTTGGTGCT+AGG - chr2.2:59712414-59712433 MS.gene01969:intron 45.0%
!! TGTAAATGGATTACCCCCCA+AGG + chr2.2:59712890-59712909 None:intergenic 45.0%
!!! GAACGGGTTGATTTTCATGG+AGG - chr2.2:59714337-59714356 MS.gene01969:intron 45.0%
!!! GGAGAACGGGTTGATTTTCA+TGG - chr2.2:59714334-59714353 MS.gene01969:intron 45.0%
ATCCGATCGGAAATCGAAGC+TGG + chr2.2:59711715-59711734 None:intergenic 50.0%
CAATTCATGCCGAGAGGACT+TGG - chr2.2:59712288-59712307 MS.gene01969:CDS 50.0%
CCGATGGTCAAGTCATGAAC+AGG + chr2.2:59712398-59712417 None:intergenic 50.0%
CCTCCGGTTCCTTGGTAAAA+GGG + chr2.2:59711956-59711975 None:intergenic 50.0%
CTAGCTGGTTGGAAGATGCA+AGG - chr2.2:59714210-59714229 MS.gene01969:intron 50.0%
GTAAAAACCCTCCGGTTCCT+TGG + chr2.2:59711964-59711983 None:intergenic 50.0%
GTGTGATCTTGCTCACAGAC+GGG - chr2.2:59714277-59714296 MS.gene01969:intron 50.0%
TAGTGGCAATTCATGCCGAG+AGG - chr2.2:59712282-59712301 MS.gene01969:CDS 50.0%
! CCTTTTACCAAGGAACCGGA+GGG - chr2.2:59711954-59711973 MS.gene01969:intron 50.0%
! GTAGGGTATGGTGGAATTCC+TGG - chr2.2:59714865-59714884 MS.gene01969:intron 50.0%
CCACTTCGCAGTCCATCTCA+AGG - chr2.2:59713777-59713796 MS.gene01969:intron 55.0%
CCCTCCGGTTCCTTGGTAAA+AGG + chr2.2:59711957-59711976 None:intergenic 55.0%
GGAATTCCTGGACCATCTGG+AGG - chr2.2:59714877-59714896 MS.gene01969:intron 55.0%
GGTGGAATTCCTGGACCATC+TGG - chr2.2:59714874-59714893 MS.gene01969:intron 55.0%
TCCTGGACCATCTGGAGGTA+GGG - chr2.2:59714882-59714901 MS.gene01969:intron 55.0%
TGACTTTCCTTGTGGGAGGG+TGG + chr2.2:59714441-59714460 None:intergenic 55.0%
TTCCTGGACCATCTGGAGGT+AGG - chr2.2:59714881-59714900 MS.gene01969:intron 55.0%
TTCCTTGTGGGAGGGTGGAT+GGG + chr2.2:59714436-59714455 None:intergenic 55.0%
TTTCCTTGTGGGAGGGTGGA+TGG + chr2.2:59714437-59714456 None:intergenic 55.0%
! CCCTTTTACCAAGGAACCGG+AGG - chr2.2:59711953-59711972 MS.gene01969:intron 55.0%
!! CCTTGAGATGGACTGCGAAG+TGG + chr2.2:59713780-59713799 None:intergenic 55.0%
!! TCACAGACGGGCTGTAAGCA+CGG - chr2.2:59714289-59714308 MS.gene01969:intron 55.0%
!! TGAGATGGACTGCGAAGTGG+TGG + chr2.2:59713777-59713796 None:intergenic 55.0%
CGGGCTGTAAGCACGGAAGA+AGG - chr2.2:59714296-59714315 MS.gene01969:intron 60.0%
GGACCATCTGGAGGTAGGGA+TGG - chr2.2:59714886-59714905 MS.gene01969:intron 60.0%
TAGGGATGGCCCTTCTGCTG+CGG - chr2.2:59714900-59714919 MS.gene01969:CDS 60.0%
TCCCTACCTCCAGATGGTCC+AGG + chr2.2:59714886-59714905 None:intergenic 60.0%
TTCCCATCCACCCTCCCACA+AGG - chr2.2:59714431-59714450 MS.gene01969:intron 60.0%
! ATGGACTGCGAAGTGGTGGC+AGG + chr2.2:59713773-59713792 None:intergenic 60.0%
AGCCTCCACCCGCAGCAGAA+GGG + chr2.2:59714912-59714931 None:intergenic 65.0%
AGGGATGGCCCTTCTGCTGC+GGG - chr2.2:59714901-59714920 MS.gene01969:CDS 65.0%
GGGCCATCCCTACCTCCAGA+TGG + chr2.2:59714892-59714911 None:intergenic 65.0%
CAGCCTCCACCCGCAGCAGA+AGG + chr2.2:59714913-59714932 None:intergenic 70.0%
GATGGCCCTTCTGCTGCGGG+TGG - chr2.2:59714904-59714923 MS.gene01969:CDS 70.0%
GGCCCTTCTGCTGCGGGTGG+AGG - chr2.2:59714907-59714926 MS.gene01969:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 59711575 59714942 59711575 ID=MS.gene01969
chr2.2 mRNA 59711575 59714942 59711575 ID=MS.gene01969.t1;Parent=MS.gene01969
chr2.2 exon 59714897 59714942 59714897 ID=MS.gene01969.t1.exon1;Parent=MS.gene01969.t1
chr2.2 CDS 59714897 59714942 59714897 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
chr2.2 exon 59714033 59714172 59714033 ID=MS.gene01969.t1.exon2;Parent=MS.gene01969.t1
chr2.2 CDS 59714033 59714172 59714033 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
chr2.2 exon 59712993 59713075 59712993 ID=MS.gene01969.t1.exon3;Parent=MS.gene01969.t1
chr2.2 CDS 59712993 59713075 59712993 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
chr2.2 exon 59712126 59712330 59712126 ID=MS.gene01969.t1.exon4;Parent=MS.gene01969.t1
chr2.2 CDS 59712126 59712330 59712126 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
chr2.2 exon 59711900 59711968 59711900 ID=MS.gene01969.t1.exon5;Parent=MS.gene01969.t1
chr2.2 CDS 59711900 59711968 59711900 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
chr2.2 exon 59711575 59711667 59711575 ID=MS.gene01969.t1.exon6;Parent=MS.gene01969.t1
chr2.2 CDS 59711575 59711667 59711575 ID=cds.MS.gene01969.t1;Parent=MS.gene01969.t1
Gene Sequence

>MS.gene01969

ATGTCTTACGCATACCTCTTCAAATACATCATCATCGGCGATACTGGTAATTATAATCTCAATTAAGCCTTTTCTAGTCTCTTTTTTATTAATCTTAATTAATCTCAATTCTCTTAATCATGTGTTTTCCAACATTTCCAGCTTCGATTTCCGATCGGATTTATTCATTTTTTTTTCAGGGTTTTTGTTTTGTTTGAGAATTATTTGATATGTTATATTTGATGTTGATTCTCTTGTGTTATTTTAACAAGCTAACAATTTTGTTCATCACTAAATCATCATAAGTATTTACTAGTTAATGAAGTTTAATTAATGAAGAATCGATCAGAAGCACCCGAGTTCTGATAACTAACTCCAACAATTATTGGTTAACCTATGCCCTTTTACCAAGGAACCGGAGGGTTTTTACCAAAAGAACATTACTTCACTGTGTTAATAGCAGGGATTATATTCAGAGTTTAGAGACTAATTATTATATTTACATAGTTTAGGGACTAAATTAGAGAGAAGGTGATATTTTATGGACTAAATTGGAGAGAAGATCATAGTTTTGATGGTTTATTCAATTTTGTTACTGCGATGGACCCTTTATTGTTACTTTTGTTTCATTCACTAAGAATCAAAACCGCTAAGTGGGTAATAGTTGAATCTTTTTTCTTTTTTTTCCTTTGATTTGTATTTTGTTAATTATGAAGTTTAAGTTTTGGTAGTGGCAATTCATGCCGAGAGGACTTGGGTTTTTTGACGTTTTTTTGAAAAAAATTGTGCAGGAGTTGGAAAGTCATGTCTTCTACTTCAGTTCACTGATAAGCGCTTTCAACCTGTTCATGACTTGACCATCGGTGTTGAATTTGGTGCTAGGATGATCACCATCGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGTATGTTTGTCAACTCTTTCATAGAACTTGTTTATTACTCCTTCCAACTTGTTCAATGTTCATACTTAATTACTGATTTACATACAAATCTGTGAAACATTATTGCTGTTTCTCGTTTCTAGGAATTGGTAATTGGTTGTGATGATCATTTCAATCCAGGGTCTTTTAATTTCACCCTGAAGATTTCTATTTGGTTGATAATGATATTTCATATTATTATTATTTTATGTTGATTCATTGGCTGATTTTCATATGAAGAGCTATGCAGATAGTAACTATATTGAGTAGTAGGCTTAGGGTTGATGCTGCCGCCGTTTGTCATATCTGTAGTCTGTTGCTATAATTTTGATATCCATGCCATTTTGTTTCAAAGAATACTCTGCTAAGTGTGATCTATAGTTTCCTTGGGGGGTAATCCATTTACATTGTTGATAATGAGAACCTAATTATTTGGGGATGATTTGAATTTATCTGTAAAAGTTACTATATACATGAAATAAATTATGGCTTTGTAGATGTAAGATAGGTTTCTAAACTCATCTTCTCAAGTGGTCATGGGGTATGAATGGAAAGATTTTATCTAATAGATGGGAGTGTAGTTTGGTAATGGTGACCCTTAAGGTACCTTCCAGTTTTCAAATGGATAGTTTTACAAGATTGACAACAGAAATACGTCCTCTCATATTGAAATTTATGTCGCCTTGTTATTCTGAAATTTTGTGTCTATAACTCTATAATGTTAAAAAATCTTCAATGTTCCACTTAATATATAAACAGAGATATAAAAACAAAATTTGACCCAGATGAGGTTCTGTGAAATTTCAACATGAGATAATCCAGTCCCTTTTCAGCATAGAATGATTATCCAGATTTCAGTGGTGGAAACATTGTTCATTTGTTGGTTGAGTTTTATAAATTGTGAAGCTGAAGGTACTGAACTTATTCACTATATTTCAGGCGGGTCAAGAATCCTTCAGATCTATCACAAGGTCATATTACAGAGGAGCTGCAGGTGCACTGCTTGTTTATGATATAACCAGGTATCCTCAAGCTTTGACTTCTATTATCTGAGTTTGAAATCCCAAAATACAATAACTATTTTCACTTAAAATTAAAGAAGCAATACATTGTGGGGGATGATGAAAATCACTGGGACAAGTCATGAATGGAGTCGTTCGTATTAGACTATAAGTTACTCGTTCGATTGTCTCTTAAATAATCTCACCAAAGTTTGGAAGAAAAGAGAGACACTATCGTATGATCTTCCTTAGGGTTAGGAACTACACCTGCCACCACTTCGCAGTCCATCTCAAGGATTATATGAAATATTAATGTTATATCTTCCAATCTTTGAAATATGATTTGCAAATCATTTTGGTCTGTTTATTTCTAAAATGCAACTGTTTAAATACAATTTCATAACTTGGGCTAAATAGCTTTTAGATTTTTTCTAGGGAAGATATGACGAGTTTGTCCAACAAAAATCAATTTATTGGAAAACATTGATTACCGTCATTTTGAGTTTTTATATGCCTTGGGAGTTGCATGTTTTGAGTGCATCCAATTTCATGGAACAACATACTATATTGGACAATTTTGATACATGGATGTCTATGTAGTTTCATGTTAGTGTTATGTGTTGTTTAATGTAAATAACTAAATAAGGCACAATATAAATAATCCTGACCGTGTTTATGAATAGGAGGGAGACATTTAATCACTTAGCTAGCTGGTTGGAAGATGCAAGGCAGCATGCAAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGTGATCTTGCTCACAGACGGGCTGTAAGCACGGAAGAAGGTGAACAGTTTGCAAAGGAGAACGGGTTGATTTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGTCAGAACTCACATCATATCTATTGTTTTCTTCATTTCTTTCCCATCCACCCTCCCACAAGGAAAGTCAGATTTTATACATAACAGGTTCTTAGGTTGAATATTTTGGAAAATTATCTGTATAAAAGTTTTATTTAATATAACCTATCCTTTTGCAGGCATTCATAAAAACAGCTGGGACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGGTTAGTTTCTTTTTTTCATTTTTTTAGATTTGTCATTTGTTACCTTGTTTGTTTTATCACTTCATTATTAATATCATTAAGGATTTGTGGGATATTCAATTTCACTGTCTCCTTTATTTTTATAATACAATCTGTGTATGTTTCAAGAAAAGGCTAGTGATTATTATAAAGTGAAAAGTGTAGCCCTTCTGATTCAAGAAACAAGTCACTGATAATTTTCATATGCTTGCAGTCTTATGGAATAAAAGTAGGGTATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCTGCGGGTGGAGGCTGCTGCAGTTGA
Protein sequence

>MS.gene01969.t1

MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSAAGGGCCS