Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81751.t1 | XP_013467977.1 | 99.5 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 5.60E-226 | 793.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81751.t1 | Q9FVS1 | 44.7 | 340 | 179 | 5 | 36 | 371 | 13 | 347 | 8.5e-82 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81751.t1 | I3SWK4 | 99.5 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 4.0e-226 | 793.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene81751 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene81751 | 0.818062 | 2.38E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene81751 | 0.837767 | 4.28E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene81751 | 0.858108 | 1.03E-62 | -1.69E-46 |
| MS.gene050384 | MS.gene81751 | 0.815076 | 1.11E-51 | -1.69E-46 |
| MS.gene050386 | MS.gene81751 | 0.803761 | 2.99E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene81751 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene81751 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene81751 | 0.800566 | 1.36E-48 | -1.69E-46 |
| MS.gene051234 | MS.gene81751 | 0.844909 | 5.64E-59 | -1.69E-46 |
| MS.gene051642 | MS.gene81751 | 0.859777 | 3.27E-63 | -1.69E-46 |
| MS.gene052072 | MS.gene81751 | 0.856324 | 3.48E-62 | -1.69E-46 |
| MS.gene052307 | MS.gene81751 | 0.86819 | 7.85E-66 | -1.69E-46 |
| MS.gene052335 | MS.gene81751 | 0.801201 | 1.01E-48 | -1.69E-46 |
| MS.gene052514 | MS.gene81751 | 0.809332 | 1.99E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene81751 | 0.806729 | 7.14E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene81751 | 0.809195 | 2.13E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene81751 | 0.853185 | 2.82E-61 | -1.69E-46 |
| MS.gene052793 | MS.gene81751 | 0.809175 | 2.15E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene81751 | 0.840569 | 8.03E-58 | -1.69E-46 |
| MS.gene053427 | MS.gene81751 | 0.802906 | 4.49E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene81751 | 0.837952 | 3.84E-57 | -1.69E-46 |
| MS.gene054709 | MS.gene81751 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene055339 | MS.gene81751 | 0.818661 | 1.74E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene81751 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene056578 | MS.gene81751 | 0.830903 | 2.26E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene81751 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene056881 | MS.gene81751 | 0.922795 | 6.17E-89 | -1.69E-46 |
| MS.gene057102 | MS.gene81751 | 0.837909 | 3.93E-57 | -1.69E-46 |
| MS.gene057132 | MS.gene81751 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene058149 | MS.gene81751 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene81751 | 0.800593 | 1.34E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene81751 | 0.828682 | 7.85E-55 | -1.69E-46 |
| MS.gene059802 | MS.gene81751 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene060343 | MS.gene81751 | -0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene81751 | 0.81627 | 6.03E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene81751 | 0.82331 | 1.48E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene81751 | 0.833903 | 4.08E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene81751 | 0.849696 | 2.74E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81751 | MS.gene98671 | PPI |
| MS.gene95088 | MS.gene81751 | PPI |
| MS.gene98670 | MS.gene81751 | PPI |
| MS.gene81751 | MS.gene071037 | PPI |
| MS.gene81751 | MS.gene024275 | PPI |
| MS.gene81751 | MS.gene42889 | PPI |
| MS.gene81751 | MS.gene009311 | PPI |
| MS.gene81751 | MS.gene005636 | PPI |
| MS.gene81751 | MS.gene024343 | PPI |
| MS.gene81751 | MS.gene75065 | PPI |
| MS.gene81751 | MS.gene59977 | PPI |
| MS.gene81751 | MS.gene05311 | PPI |
| MS.gene81751 | MS.gene064044 | PPI |
| MS.gene75067 | MS.gene81751 | PPI |
| MS.gene81751 | MS.gene53925 | PPI |
| MS.gene81751 | MS.gene024341 | PPI |
| MS.gene81751 | MS.gene47120 | PPI |
| MS.gene81751 | MS.gene012753 | PPI |
| MS.gene071039 | MS.gene81751 | PPI |
| MS.gene52540 | MS.gene81751 | PPI |
| MS.gene81751 | MS.gene98673 | PPI |
| MS.gene03004 | MS.gene81751 | PPI |
| MS.gene81751 | MS.gene67877 | PPI |
| MS.gene81751 | MS.gene42891 | PPI |
| MS.gene81751 | MS.gene43440 | PPI |
| MS.gene81751 | MS.gene42887 | PPI |
| MS.gene81751 | MS.gene33922 | PPI |
| MS.gene81751 | MS.gene42893 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81751.t1 | MTR_1g059840 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 779 |
| MS.gene81751.t1 | MTR_7g104790 | 64.187 | 363 | 119 | 6 | 19 | 374 | 41 | 399 | 1.75e-165 | 469 |
| MS.gene81751.t1 | MTR_7g104790 | 64.187 | 363 | 119 | 6 | 19 | 374 | 17 | 375 | 6.63e-165 | 466 |
| MS.gene81751.t1 | MTR_7g104785 | 58.824 | 357 | 139 | 4 | 19 | 373 | 18 | 368 | 2.77e-146 | 419 |
| MS.gene81751.t1 | MTR_7g104760 | 58.865 | 141 | 40 | 2 | 215 | 354 | 16 | 139 | 3.04e-48 | 160 |
| MS.gene81751.t1 | MTR_2g020080 | 30.769 | 247 | 133 | 9 | 76 | 306 | 8 | 232 | 1.53e-23 | 99.4 |
| MS.gene81751.t1 | MTR_2g034630 | 26.875 | 320 | 169 | 13 | 37 | 351 | 73 | 332 | 2.55e-19 | 88.6 |
| MS.gene81751.t1 | MTR_2g015760 | 28.070 | 171 | 114 | 4 | 34 | 198 | 13 | 180 | 1.31e-13 | 71.2 |
| MS.gene81751.t1 | MTR_3g114990 | 21.574 | 343 | 207 | 11 | 36 | 327 | 24 | 355 | 9.06e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81751.t1 | AT1G57790 | 44.706 | 340 | 179 | 5 | 36 | 371 | 13 | 347 | 1.26e-98 | 297 |
| MS.gene81751.t1 | AT3G56470 | 43.860 | 342 | 178 | 4 | 34 | 372 | 27 | 357 | 1.10e-95 | 290 |
| MS.gene81751.t1 | AT4G00893 | 42.700 | 363 | 194 | 7 | 17 | 371 | 26 | 382 | 2.84e-95 | 290 |
| MS.gene81751.t1 | AT4G12370 | 44.702 | 302 | 155 | 6 | 83 | 375 | 1 | 299 | 1.91e-81 | 251 |
| MS.gene81751.t1 | AT4G10660 | 42.997 | 307 | 160 | 5 | 70 | 364 | 9 | 312 | 4.17e-78 | 243 |
| MS.gene81751.t1 | AT1G49360 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.15e-63 | 207 |
| MS.gene81751.t1 | AT1G49360 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.15e-63 | 207 |
| MS.gene81751.t1 | AT1G49360 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.15e-63 | 207 |
| MS.gene81751.t1 | AT1G49360 | 36.712 | 365 | 187 | 15 | 39 | 373 | 111 | 461 | 1.03e-62 | 208 |
| MS.gene81751.t1 | AT1G49360 | 36.712 | 365 | 187 | 15 | 39 | 373 | 88 | 438 | 1.03e-62 | 207 |
| MS.gene81751.t1 | AT3G18720 | 36.390 | 349 | 182 | 11 | 39 | 371 | 52 | 376 | 1.24e-56 | 190 |
| MS.gene81751.t1 | AT4G10695 | 40.265 | 226 | 131 | 2 | 48 | 269 | 1 | 226 | 8.45e-55 | 180 |
| MS.gene81751.t1 | AT4G10695 | 40.265 | 226 | 131 | 2 | 48 | 269 | 1 | 226 | 8.45e-55 | 180 |
| MS.gene81751.t1 | AT4G12382 | 47.619 | 126 | 66 | 0 | 35 | 160 | 9 | 134 | 2.54e-39 | 137 |
| MS.gene81751.t1 | AT4G12382 | 47.619 | 126 | 66 | 0 | 35 | 160 | 9 | 134 | 2.54e-39 | 137 |
| MS.gene81751.t1 | AT4G10700 | 47.934 | 121 | 56 | 2 | 255 | 369 | 119 | 238 | 1.39e-28 | 112 |
| MS.gene81751.t1 | AT4G10700 | 43.373 | 83 | 47 | 0 | 69 | 151 | 8 | 90 | 3.55e-20 | 89.4 |
| MS.gene81751.t1 | AT2G44735 | 43.396 | 159 | 79 | 7 | 136 | 287 | 110 | 264 | 4.30e-28 | 113 |
| MS.gene81751.t1 | AT4G22035 | 32.800 | 125 | 79 | 3 | 35 | 155 | 12 | 135 | 1.81e-11 | 63.9 |
| MS.gene81751.t1 | AT4G22660 | 31.783 | 129 | 72 | 3 | 34 | 150 | 8 | 132 | 6.40e-11 | 63.9 |
Find 82 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATACCACTGACCAAATTT+TGG | 0.144092 | 1.3:+43433129 | None:intergenic |
| TGGTCTAACTTGAAAATAAT+AGG | 0.240703 | 1.3:+43432547 | None:intergenic |
| AGAGGTGGAAAATGATAATT+TGG | 0.262706 | 1.3:-43433313 | MS.gene81751:CDS |
| TTGATAGTCTCCCGAGTAAA+AGG | 0.263964 | 1.3:+43432973 | None:intergenic |
| CATATCTCGTTTAGCCTTAG+AGG | 0.269854 | 1.3:-43433244 | MS.gene81751:CDS |
| TAACAAAAGGCAGACGGTTT+TGG | 0.299358 | 1.3:+43432794 | None:intergenic |
| GTTTCTTGTCTTCTCATTCA+AGG | 0.344326 | 1.3:-43432468 | MS.gene81751:CDS |
| GGTCTAACTTGAAAATAATA+GGG | 0.354290 | 1.3:+43432548 | None:intergenic |
| CTCGTAAGCAGTGGCATGAC+TGG | 0.366506 | 1.3:-43432342 | MS.gene81751:CDS |
| TCAATCCATATGCTTTCAAA+AGG | 0.390242 | 1.3:+43432307 | None:intergenic |
| ATCATTTCTAATAGTTCAGC+AGG | 0.392094 | 1.3:+43433267 | None:intergenic |
| AGCACGGACATTGTCCTCTA+AGG | 0.396495 | 1.3:+43433230 | None:intergenic |
| ATTGAGTTTCCTGAGTTGAA+TGG | 0.407380 | 1.3:-43433072 | MS.gene81751:CDS |
| GCCATCAGCACATGTCACCC+TGG | 0.425844 | 1.3:-43432844 | MS.gene81751:CDS |
| CACAAGAGAACGCAACTATC+TGG | 0.427646 | 1.3:+43432926 | None:intergenic |
| CTGAGTCTAACGGGTTGGCT+AGG | 0.428305 | 1.3:-43432724 | MS.gene81751:CDS |
| AGAGTTTGTTACACAAAAGA+TGG | 0.432818 | 1.3:-43433045 | MS.gene81751:CDS |
| CAAGTTAGACCAGGCCTCAA+TGG | 0.439625 | 1.3:-43432536 | MS.gene81751:CDS |
| GAATAGGTCCTCCGCTGCAC+AGG | 0.439702 | 1.3:+43433096 | None:intergenic |
| CTTCTGCGGTTTGCAAGAGT+TGG | 0.446022 | 1.3:-43433209 | MS.gene81751:CDS |
| CTTCCCATTCCATTGAGGCC+TGG | 0.447033 | 1.3:+43432527 | None:intergenic |
| TGAGTCTAACGGGTTGGCTA+GGG | 0.453281 | 1.3:-43432723 | MS.gene81751:CDS |
| CTCAGGAAACTCAATGGAAT+AGG | 0.455431 | 1.3:+43433080 | None:intergenic |
| TTCTCTGGGCATTTGGGTGG+AGG | 0.456945 | 1.3:+43432658 | None:intergenic |
| CATTCAAGGACTGACCTCCT+TGG | 0.460684 | 1.3:-43432454 | MS.gene81751:CDS |
| AATACATCAACCATGGTGAT+TGG | 0.465857 | 1.3:+43433154 | None:intergenic |
| CATCAATTTCGCATAATGTC+AGG | 0.471424 | 1.3:-43434158 | None:intergenic |
| TTCCATATGCTACTAACAAA+AGG | 0.472828 | 1.3:+43432781 | None:intergenic |
| TTGATCCATCTGAACGCACT+TGG | 0.477811 | 1.3:-43432696 | MS.gene81751:CDS |
| TGGTATGTCATCTCAAATCT+TGG | 0.481609 | 1.3:+43432946 | None:intergenic |
| AATAAGCTTGTGTTCTGTAA+TGG | 0.484684 | 1.3:-43432760 | MS.gene81751:CDS |
| GTGCTGATGGCCACAATAGT+AGG | 0.487396 | 1.3:+43432856 | None:intergenic |
| CCATCAGCACATGTCACCCT+GGG | 0.492069 | 1.3:-43432843 | MS.gene81751:CDS |
| AGACCAGGCCTCAATGGAAT+GGG | 0.506121 | 1.3:-43432530 | MS.gene81751:CDS |
| ATGGTTGGTTACTGCTATAC+CGG | 0.507693 | 1.3:-43433026 | MS.gene81751:CDS |
| TAGCTCTTCCCATTCCATTG+AGG | 0.512554 | 1.3:+43432522 | None:intergenic |
| CCCAGGGTGACATGTGCTGA+TGG | 0.513422 | 1.3:+43432843 | None:intergenic |
| GTTCACCATGCGTACAGCAT+TGG | 0.515987 | 1.3:+43433176 | None:intergenic |
| TCGTAAGCAGTGGCATGACT+GGG | 0.517661 | 1.3:-43432341 | MS.gene81751:CDS |
| ATTCAACTCAGGAAACTCAA+TGG | 0.520817 | 1.3:+43433074 | None:intergenic |
| TAGACCAGGCCTCAATGGAA+TGG | 0.520927 | 1.3:-43432531 | MS.gene81751:CDS |
| ACAGTGAACAATACACAGTC+AGG | 0.522970 | 1.3:+43432892 | None:intergenic |
| ATAATTTGGAGCTGCAAACA+TGG | 0.524692 | 1.3:-43433299 | MS.gene81751:CDS |
| ACGCTCCAAGTGCGTTCAGA+TGG | 0.530295 | 1.3:+43432691 | None:intergenic |
| CTGACCTCCTTGGAAATATG+AGG | 0.530915 | 1.3:-43432444 | MS.gene81751:CDS |
| CAATCCATATGCTTTCAAAA+GGG | 0.538554 | 1.3:+43432308 | None:intergenic |
| TTTGTTACACAAAAGATGGT+TGG | 0.543077 | 1.3:-43433041 | MS.gene81751:CDS |
| TATAACATCTCCCTCTTGCT+CGG | 0.543615 | 1.3:+43432597 | None:intergenic |
| GTGACCCACTCAGTTGCCCC+AGG | 0.548400 | 1.3:+43432826 | None:intergenic |
| AATACACAGTCAGGTGATGT+TGG | 0.549189 | 1.3:+43432901 | None:intergenic |
| CAGAAGAGAAGCAACAGAGG+TGG | 0.554810 | 1.3:-43433328 | MS.gene81751:CDS |
| ATTGCCTGAGTCTAACGGGT+TGG | 0.555672 | 1.3:-43432729 | MS.gene81751:CDS |
| GCATGTTAGTCCTACTATTG+TGG | 0.555933 | 1.3:-43432866 | MS.gene81751:CDS |
| TACTGTTCCTCATATTTCCA+AGG | 0.557830 | 1.3:+43432437 | None:intergenic |
| AAATTCTCTGGGCATTTGGG+TGG | 0.572307 | 1.3:+43432655 | None:intergenic |
| ACACTCGATCAGTTCTTGGC+CGG | 0.582893 | 1.3:+43433007 | None:intergenic |
| GAAATTTATGACCGAGCAAG+AGG | 0.585940 | 1.3:-43432608 | MS.gene81751:CDS |
| TCACCCTGGGGCAACTGAGT+GGG | 0.589444 | 1.3:-43432830 | MS.gene81751:CDS |
| CAGTCATGCCACTGCTTACG+AGG | 0.597324 | 1.3:+43432343 | None:intergenic |
| GTCACCCTGGGGCAACTGAG+TGG | 0.599763 | 1.3:-43432831 | MS.gene81751:CDS |
| CTAGCCAACCCGTTAGACTC+AGG | 0.605339 | 1.3:+43432725 | None:intergenic |
| ACTCTAGATCCATTCAACTC+AGG | 0.606054 | 1.3:+43433063 | None:intergenic |
| TTTGGAAAATACATCAACCA+TGG | 0.609449 | 1.3:+43433147 | None:intergenic |
| AATAGGTCCTCCGCTGCACA+GGG | 0.610369 | 1.3:+43433097 | None:intergenic |
| CATATGGATTGAACCACCAA+AGG | 0.612060 | 1.3:-43432296 | MS.gene81751:CDS |
| TCTTGCAAACCGCAGAAGCA+CGG | 0.620256 | 1.3:+43433214 | None:intergenic |
| GAGTCTAACGGGTTGGCTAG+GGG | 0.622563 | 1.3:-43432722 | MS.gene81751:CDS |
| TCTATGACCCTGTGCAGCGG+AGG | 0.622795 | 1.3:-43433104 | MS.gene81751:CDS |
| TGCTACTAACAAAAGGCAGA+CGG | 0.625252 | 1.3:+43432788 | None:intergenic |
| GAGCAGAAGAGAAGCAACAG+AGG | 0.625517 | 1.3:-43433331 | MS.gene81751:CDS |
| GGACAATGTCCGTGCTTCTG+CGG | 0.633574 | 1.3:-43433223 | MS.gene81751:CDS |
| TGACCCACTCAGTTGCCCCA+GGG | 0.643613 | 1.3:+43432827 | None:intergenic |
| AATTCTATGACCCTGTGCAG+CGG | 0.644847 | 1.3:-43433107 | MS.gene81751:CDS |
| TGTTGCCAATGCTGTACGCA+TGG | 0.644907 | 1.3:-43433181 | MS.gene81751:CDS |
| AAATTTATGACCGAGCAAGA+GGG | 0.650243 | 1.3:-43432607 | MS.gene81751:CDS |
| GCTACTATCCTCGTAAGCAG+TGG | 0.662398 | 1.3:-43432351 | MS.gene81751:CDS |
| CGTAAGCAGTGGCATGACTG+GGG | 0.674467 | 1.3:-43432340 | MS.gene81751:CDS |
| TGTTCCTCATATTTCCAAGG+AGG | 0.678301 | 1.3:+43432440 | None:intergenic |
| TAATTTGGAGCTGCAAACAT+GGG | 0.684242 | 1.3:-43433298 | MS.gene81751:CDS |
| TCATTTCTAATAGTTCAGCA+GGG | 0.696179 | 1.3:+43433268 | None:intergenic |
| CATCAGCACATGTCACCCTG+GGG | 0.702309 | 1.3:-43432842 | MS.gene81751:CDS |
| GCATGGTGAACCAATCACCA+TGG | 0.715864 | 1.3:-43433164 | MS.gene81751:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTATTCACAAT+TGG | - | chr1.3:43432904-43432923 | MS.gene81751:CDS | 10.0% |
| !!! | ATTTTTTTTTATTCACAATT+GGG | - | chr1.3:43432905-43432924 | MS.gene81751:CDS | 10.0% |
| !!! | GAATTAAACTAAATTAGTTT+AGG | - | chr1.3:43432663-43432682 | MS.gene81751:CDS | 15.0% |
| !! | AAACTAAATGTGTGAAAATT+GGG | - | chr1.3:43432390-43432409 | MS.gene81751:CDS | 20.0% |
| !! | TAAACTAAATGTGTGAAAAT+TGG | - | chr1.3:43432389-43432408 | MS.gene81751:CDS | 20.0% |
| !!! | AGAATTTTTTCGCAAAAAAT+TGG | - | chr1.3:43433780-43433799 | MS.gene81751:intron | 20.0% |
| !!! | TTGATGTATTTTCCAAAATT+TGG | - | chr1.3:43433278-43433297 | MS.gene81751:CDS | 20.0% |
| !!! | TTTTCTTTAATCCTTTTACT+CGG | - | chr1.3:43433435-43433454 | MS.gene81751:intron | 20.0% |
| ! | ACATGCATTTCTGATTATTT+AGG | - | chr1.3:43433045-43433064 | MS.gene81751:CDS | 25.0% |
| ! | GATAACATAACATAACAACT+AGG | + | chr1.3:43432878-43432897 | None:intergenic | 25.0% |
| ! | GGTCTAACTTGAAAATAATA+GGG | + | chr1.3:43433874-43433893 | None:intergenic | 25.0% |
| ! | TGGTCTAACTTGAAAATAAT+AGG | + | chr1.3:43433875-43433894 | None:intergenic | 25.0% |
| !! | ACATATGACTTTTACATGAT+TGG | - | chr1.3:43432719-43432738 | MS.gene81751:CDS | 25.0% |
| !! | TTATCACATTGATTGCATTA+GGG | - | chr1.3:43432525-43432544 | MS.gene81751:CDS | 25.0% |
| !! | TTTATCACATTGATTGCATT+AGG | - | chr1.3:43432524-43432543 | MS.gene81751:CDS | 25.0% |
| !! | TTTCTTTAATCCTTTTACTC+GGG | - | chr1.3:43433436-43433455 | MS.gene81751:intron | 25.0% |
| !! | TTTTTGCGAAAAAATTCTCT+GGG | + | chr1.3:43433778-43433797 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGCAAAAAATTGG+TGG | - | chr1.3:43433783-43433802 | MS.gene81751:intron | 25.0% |
| !!! | TATTATTTTCAAGTTAGACC+AGG | - | chr1.3:43433874-43433893 | MS.gene81751:intron | 25.0% |
| !!! | TGAAAATTGGGTTTTAATGT+TGG | - | chr1.3:43432402-43432421 | MS.gene81751:CDS | 25.0% |
| !!! | TTCTCTAAAGTTCGTTTTTA+TGG | - | chr1.3:43434010-43434029 | MS.gene81751:intron | 25.0% |
| !!! | TTTTTTGCGAAAAAATTCTC+TGG | + | chr1.3:43433779-43433798 | None:intergenic | 25.0% |
| AAAAAATTCTCTGGGCATTT+GGG | + | chr1.3:43433770-43433789 | None:intergenic | 30.0% | |
| AAACCAAGCTCATTAATTGA+TGG | - | chr1.3:43432789-43432808 | MS.gene81751:CDS | 30.0% | |
| AACCAAGCTCATTAATTGAT+GGG | - | chr1.3:43432790-43432809 | MS.gene81751:CDS | 30.0% | |
| AATAAGCTTGTGTTCTGTAA+TGG | - | chr1.3:43433659-43433678 | MS.gene81751:intron | 30.0% | |
| AATGCTCTTAAAATGCAACA+AGG | + | chr1.3:43432998-43433017 | None:intergenic | 30.0% | |
| AGAGGTGGAAAATGATAATT+TGG | - | chr1.3:43433106-43433125 | MS.gene81751:CDS | 30.0% | |
| ATCATTTCTAATAGTTCAGC+AGG | + | chr1.3:43433155-43433174 | None:intergenic | 30.0% | |
| ATTGATTGCATTAGGGTTTA+TGG | - | chr1.3:43432532-43432551 | MS.gene81751:CDS | 30.0% | |
| CAATCCATATGCTTTCAAAA+GGG | + | chr1.3:43434114-43434133 | None:intergenic | 30.0% | |
| TCAATCCATATGCTTTCAAA+AGG | + | chr1.3:43434115-43434134 | None:intergenic | 30.0% | |
| TCATTTCTAATAGTTCAGCA+GGG | + | chr1.3:43433154-43433173 | None:intergenic | 30.0% | |
| TTCCATATGCTACTAACAAA+AGG | + | chr1.3:43433641-43433660 | None:intergenic | 30.0% | |
| TTTGGAAAATACATCAACCA+TGG | + | chr1.3:43433275-43433294 | None:intergenic | 30.0% | |
| TTTGTTACACAAAAGATGGT+TGG | - | chr1.3:43433378-43433397 | MS.gene81751:intron | 30.0% | |
| ! | ATTTTCCAAAATTTGGTCAG+TGG | - | chr1.3:43433285-43433304 | MS.gene81751:CDS | 30.0% |
| ! | TTTTATTCACAATTGGGTAG+TGG | - | chr1.3:43432911-43432930 | MS.gene81751:CDS | 30.0% |
| !! | AGAGTTTGTTACACAAAAGA+TGG | - | chr1.3:43433374-43433393 | MS.gene81751:intron | 30.0% |
| !! | TTTTACATGATTGGTTGTGA+TGG | - | chr1.3:43432728-43432747 | MS.gene81751:CDS | 30.0% |
| AAAAACACTCGATCAGTTCT+TGG | + | chr1.3:43433419-43433438 | None:intergenic | 35.0% | |
| AAATTTATGACCGAGCAAGA+GGG | - | chr1.3:43433812-43433831 | MS.gene81751:intron | 35.0% | |
| AATACATCAACCATGGTGAT+TGG | + | chr1.3:43433268-43433287 | None:intergenic | 35.0% | |
| AATCCAGAAAAATCCTTTGG+TGG | + | chr1.3:43434139-43434158 | None:intergenic | 35.0% | |
| ATTCAACTCAGGAAACTCAA+TGG | + | chr1.3:43433348-43433367 | None:intergenic | 35.0% | |
| GAAAAAATTCTCTGGGCATT+TGG | + | chr1.3:43433771-43433790 | None:intergenic | 35.0% | |
| GAAGAGCTAAAAACACTAGA+TGG | - | chr1.3:43433911-43433930 | MS.gene81751:intron | 35.0% | |
| GAGAATCCAGAAAAATCCTT+TGG | + | chr1.3:43434142-43434161 | None:intergenic | 35.0% | |
| GTTTCTTGTCTTCTCATTCA+AGG | - | chr1.3:43433951-43433970 | MS.gene81751:intron | 35.0% | |
| TACTGTTCCTCATATTTCCA+AGG | + | chr1.3:43433985-43434004 | None:intergenic | 35.0% | |
| TGGTATGTCATCTCAAATCT+TGG | + | chr1.3:43433476-43433495 | None:intergenic | 35.0% | |
| TTCGCAAAAAATTGGTGGAA+GGG | - | chr1.3:43433788-43433807 | MS.gene81751:intron | 35.0% | |
| TTTCGCAAAAAATTGGTGGA+AGG | - | chr1.3:43433787-43433806 | MS.gene81751:intron | 35.0% | |
| ! | AGCATTCAAGTGGATTTGTT+CGG | - | chr1.3:43433012-43433031 | MS.gene81751:CDS | 35.0% |
| ! | ATAATTTGGAGCTGCAAACA+TGG | - | chr1.3:43433120-43433139 | MS.gene81751:CDS | 35.0% |
| ! | ATTGAGTTTCCTGAGTTGAA+TGG | - | chr1.3:43433347-43433366 | MS.gene81751:CDS | 35.0% |
| ! | CTTTTATTGCCTGAGTCTAA+CGG | - | chr1.3:43433685-43433704 | MS.gene81751:intron | 35.0% |
| ! | TAATTTGGAGCTGCAAACAT+GGG | - | chr1.3:43433121-43433140 | MS.gene81751:CDS | 35.0% |
| ! | TCATACCACTGACCAAATTT+TGG | + | chr1.3:43433293-43433312 | None:intergenic | 35.0% |
| ! | TGCCTTTTGTTAGTAGCATA+TGG | - | chr1.3:43433636-43433655 | MS.gene81751:intron | 35.0% |
| ! | TTTTATTGCCTGAGTCTAAC+GGG | - | chr1.3:43433686-43433705 | MS.gene81751:intron | 35.0% |
| !! | AAGACCCTTTTGAAAGCATA+TGG | - | chr1.3:43434107-43434126 | MS.gene81751:intron | 35.0% |
| !! | AATTGGGTAGTGGAAGAATA+TGG | - | chr1.3:43432921-43432940 | MS.gene81751:CDS | 35.0% |
| !!! | GCATTTTAAGAGCATTCAAG+TGG | - | chr1.3:43433002-43433021 | MS.gene81751:CDS | 35.0% |
| AATACACAGTCAGGTGATGT+TGG | + | chr1.3:43433521-43433540 | None:intergenic | 40.0% | |
| ACAGTGAACAATACACAGTC+AGG | + | chr1.3:43433530-43433549 | None:intergenic | 40.0% | |
| ACTCTAGATCCATTCAACTC+AGG | + | chr1.3:43433359-43433378 | None:intergenic | 40.0% | |
| CACCCATCAATTAATGAGCT+TGG | + | chr1.3:43432795-43432814 | None:intergenic | 40.0% | |
| CTCAGGAAACTCAATGGAAT+AGG | + | chr1.3:43433342-43433361 | None:intergenic | 40.0% | |
| GAAATTTATGACCGAGCAAG+AGG | - | chr1.3:43433811-43433830 | MS.gene81751:intron | 40.0% | |
| GCATGTTAGTCCTACTATTG+TGG | - | chr1.3:43433553-43433572 | MS.gene81751:intron | 40.0% | |
| TATAACATCTCCCTCTTGCT+CGG | + | chr1.3:43433825-43433844 | None:intergenic | 40.0% | |
| TCGCAAAAAATTGGTGGAAG+GGG | - | chr1.3:43433789-43433808 | MS.gene81751:intron | 40.0% | |
| TGCTACTAACAAAAGGCAGA+CGG | + | chr1.3:43433634-43433653 | None:intergenic | 40.0% | |
| TGTTCCTCATATTTCCAAGG+AGG | + | chr1.3:43433982-43434001 | None:intergenic | 40.0% | |
| TGTTGGATCTCTGTGTAGAA+TGG | - | chr1.3:43432419-43432438 | MS.gene81751:CDS | 40.0% | |
| ! | ATGGTTGGTTACTGCTATAC+CGG | - | chr1.3:43433393-43433412 | MS.gene81751:intron | 40.0% |
| ! | CATATGGATTGAACCACCAA+AGG | - | chr1.3:43434123-43434142 | MS.gene81751:intron | 40.0% |
| ! | GAACCACCAAAGGATTTTTC+TGG | - | chr1.3:43434133-43434152 | MS.gene81751:intron | 40.0% |
| ! | TAACAAAAGGCAGACGGTTT+TGG | + | chr1.3:43433628-43433647 | None:intergenic | 40.0% |
| ! | TTGATAGTCTCCCGAGTAAA+AGG | + | chr1.3:43433449-43433468 | None:intergenic | 40.0% |
| !! | CATATCTCGTTTAGCCTTAG+AGG | - | chr1.3:43433175-43433194 | MS.gene81751:CDS | 40.0% |
| AAATTCTCTGGGCATTTGGG+TGG | + | chr1.3:43433767-43433786 | None:intergenic | 45.0% | |
| AATTCTATGACCCTGTGCAG+CGG | - | chr1.3:43433312-43433331 | MS.gene81751:CDS | 45.0% | |
| CACAAGAGAACGCAACTATC+TGG | + | chr1.3:43433496-43433515 | None:intergenic | 45.0% | |
| CTGACCTCCTTGGAAATATG+AGG | - | chr1.3:43433975-43433994 | MS.gene81751:intron | 45.0% | |
| TAGCTCTTCCCATTCCATTG+AGG | + | chr1.3:43433900-43433919 | None:intergenic | 45.0% | |
| TGGATCTCTGTGTAGAATGG+TGG | - | chr1.3:43432422-43432441 | MS.gene81751:CDS | 45.0% | |
| TTGATCCATCTGAACGCACT+TGG | - | chr1.3:43433723-43433742 | MS.gene81751:intron | 45.0% | |
| !! | ACGCACTTGGAGCGTTTTAT+CGG | - | chr1.3:43433736-43433755 | MS.gene81751:intron | 45.0% |
| ACACTCGATCAGTTCTTGGC+CGG | + | chr1.3:43433415-43433434 | None:intergenic | 50.0% | |
| AGACCAGGCCTCAATGGAAT+GGG | - | chr1.3:43433889-43433908 | MS.gene81751:intron | 50.0% | |
| AGCACGGACATTGTCCTCTA+AGG | + | chr1.3:43433192-43433211 | None:intergenic | 50.0% | |
| CAAGTTAGACCAGGCCTCAA+TGG | - | chr1.3:43433883-43433902 | MS.gene81751:intron | 50.0% | |
| CAGAAGAGAAGCAACAGAGG+TGG | - | chr1.3:43433091-43433110 | MS.gene81751:CDS | 50.0% | |
| CATTCAAGGACTGACCTCCT+TGG | - | chr1.3:43433965-43433984 | MS.gene81751:intron | 50.0% | |
| CTTCTGCGGTTTGCAAGAGT+TGG | - | chr1.3:43433210-43433229 | MS.gene81751:CDS | 50.0% | |
| GAGCAGAAGAGAAGCAACAG+AGG | - | chr1.3:43433088-43433107 | MS.gene81751:CDS | 50.0% | |
| GCATGGTGAACCAATCACCA+TGG | - | chr1.3:43433255-43433274 | MS.gene81751:CDS | 50.0% | |
| GCTACTATCCTCGTAAGCAG+TGG | - | chr1.3:43434068-43434087 | MS.gene81751:intron | 50.0% | |
| GTTCACCATGCGTACAGCAT+TGG | + | chr1.3:43433246-43433265 | None:intergenic | 50.0% | |
| TAGACCAGGCCTCAATGGAA+TGG | - | chr1.3:43433888-43433907 | MS.gene81751:intron | 50.0% | |
| TCGTAAGCAGTGGCATGACT+GGG | - | chr1.3:43434078-43434097 | MS.gene81751:intron | 50.0% | |
| TCTTGCAAACCGCAGAAGCA+CGG | + | chr1.3:43433208-43433227 | None:intergenic | 50.0% | |
| TGTTGCCAATGCTGTACGCA+TGG | - | chr1.3:43433238-43433257 | MS.gene81751:CDS | 50.0% | |
| ! | ATTGCCTGAGTCTAACGGGT+TGG | - | chr1.3:43433690-43433709 | MS.gene81751:intron | 50.0% |
| ! | GTGCTGATGGCCACAATAGT+AGG | + | chr1.3:43433566-43433585 | None:intergenic | 50.0% |
| !! | TGAGTCTAACGGGTTGGCTA+GGG | - | chr1.3:43433696-43433715 | MS.gene81751:intron | 50.0% |
| AATAGGTCCTCCGCTGCACA+GGG | + | chr1.3:43433325-43433344 | None:intergenic | 55.0% | |
| ACGCTCCAAGTGCGTTCAGA+TGG | + | chr1.3:43433731-43433750 | None:intergenic | 55.0% | |
| CAGTCATGCCACTGCTTACG+AGG | + | chr1.3:43434079-43434098 | None:intergenic | 55.0% | |
| CATCAGCACATGTCACCCTG+GGG | - | chr1.3:43433577-43433596 | MS.gene81751:intron | 55.0% | |
| CCATCAGCACATGTCACCCT+GGG | - | chr1.3:43433576-43433595 | MS.gene81751:intron | 55.0% | |
| CGTAAGCAGTGGCATGACTG+GGG | - | chr1.3:43434079-43434098 | MS.gene81751:intron | 55.0% | |
| CTAGCCAACCCGTTAGACTC+AGG | + | chr1.3:43433697-43433716 | None:intergenic | 55.0% | |
| CTCGTAAGCAGTGGCATGAC+TGG | - | chr1.3:43434077-43434096 | MS.gene81751:intron | 55.0% | |
| CTTCCCATTCCATTGAGGCC+TGG | + | chr1.3:43433895-43433914 | None:intergenic | 55.0% | |
| GGACAATGTCCGTGCTTCTG+CGG | - | chr1.3:43433196-43433215 | MS.gene81751:CDS | 55.0% | |
| TTCTCTGGGCATTTGGGTGG+AGG | + | chr1.3:43433764-43433783 | None:intergenic | 55.0% | |
| !! | CTGAGTCTAACGGGTTGGCT+AGG | - | chr1.3:43433695-43433714 | MS.gene81751:intron | 55.0% |
| !! | GAGTCTAACGGGTTGGCTAG+GGG | - | chr1.3:43433697-43433716 | MS.gene81751:intron | 55.0% |
| CCCAGGGTGACATGTGCTGA+TGG | + | chr1.3:43433579-43433598 | None:intergenic | 60.0% | |
| GAATAGGTCCTCCGCTGCAC+AGG | + | chr1.3:43433326-43433345 | None:intergenic | 60.0% | |
| GCCATCAGCACATGTCACCC+TGG | - | chr1.3:43433575-43433594 | MS.gene81751:intron | 60.0% | |
| TCACCCTGGGGCAACTGAGT+GGG | - | chr1.3:43433589-43433608 | MS.gene81751:intron | 60.0% | |
| TCTATGACCCTGTGCAGCGG+AGG | - | chr1.3:43433315-43433334 | MS.gene81751:CDS | 60.0% | |
| TGACCCACTCAGTTGCCCCA+GGG | + | chr1.3:43433595-43433614 | None:intergenic | 60.0% | |
| GTCACCCTGGGGCAACTGAG+TGG | - | chr1.3:43433588-43433607 | MS.gene81751:intron | 65.0% | |
| GTGACCCACTCAGTTGCCCC+AGG | + | chr1.3:43433596-43433615 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43432276 | 43434165 | 43432276 | ID=MS.gene81751 |
| chr1.3 | mRNA | 43432276 | 43434165 | 43432276 | ID=MS.gene81751.t1;Parent=MS.gene81751 |
| chr1.3 | exon | 43434134 | 43434165 | 43434134 | ID=MS.gene81751.t1.exon1;Parent=MS.gene81751.t1 |
| chr1.3 | CDS | 43434134 | 43434165 | 43434134 | ID=cds.MS.gene81751.t1;Parent=MS.gene81751.t1 |
| chr1.3 | exon | 43432276 | 43433374 | 43432276 | ID=MS.gene81751.t1.exon2;Parent=MS.gene81751.t1 |
| chr1.3 | CDS | 43432276 | 43433374 | 43432276 | ID=cds.MS.gene81751.t1;Parent=MS.gene81751.t1 |
| Gene Sequence |
| Protein sequence |
