Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05459.t1 | XP_003620482.1 | 99.6 | 232 | 1 | 0 | 1 | 232 | 1 | 232 | 7.10E-131 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05459.t1 | Q7DLR9 | 83.7 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 1.2e-113 | 410.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05459.t1 | G7KN41 | 99.6 | 232 | 1 | 0 | 1 | 232 | 1 | 232 | 5.2e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05459.t1 | MTR_6g084450 | 99.569 | 232 | 1 | 0 | 1 | 232 | 1 | 232 | 3.60e-174 | 478 |
| MS.gene05459.t1 | MTR_4g060540 | 91.810 | 232 | 19 | 0 | 1 | 232 | 1 | 232 | 7.61e-165 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05459.t1 | AT1G56450 | 83.700 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 7.47e-148 | 412 |
Find 67 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACCTTCTTCAGTAATTT+TGG | 0.133521 | 6.4:+58296370 | None:intergenic |
| CATTCTCATGGCTGCTGATA+TGG | 0.179124 | 6.4:-58299216 | MS.gene05459:CDS |
| TGGGATGATGGGAATTCTTT+GGG | 0.256707 | 6.4:-58298365 | MS.gene05459:CDS |
| TGTTCTTGGTGGTGTTAAAA+AGG | 0.257084 | 6.4:-58298264 | MS.gene05459:CDS |
| ATTGGAAAGCACTCCCTTCT+AGG | 0.281758 | 6.4:-58298707 | MS.gene05459:CDS |
| TTGTGGAACTCGCTTGTTCT+TGG | 0.303550 | 6.4:-58298278 | MS.gene05459:CDS |
| GTGGGATGATGGGAATTCTT+TGG | 0.319281 | 6.4:-58298366 | MS.gene05459:CDS |
| GTCTGCTGTCAACAAGATTC+AGG | 0.319668 | 6.4:-58297969 | MS.gene05459:intron |
| CATCCCACATGTTGTCAATA+AGG | 0.327041 | 6.4:+58298381 | None:intergenic |
| TATATCCAGGTTAGCATGAT+TGG | 0.334735 | 6.4:-58298142 | MS.gene05459:intron |
| CATTCTCTTTGAAAACATAC+TGG | 0.339670 | 6.4:-58296334 | MS.gene05459:CDS |
| TTCCACTCATCGCGGAGAAT+TGG | 0.357012 | 6.4:+58298064 | None:intergenic |
| TAACTCGGGTGATGTATAAT+AGG | 0.358277 | 6.4:-58298319 | MS.gene05459:CDS |
| TTTCCCCACTAGCACCTAGA+AGG | 0.363671 | 6.4:+58298693 | None:intergenic |
| GAAGACAGCCATGTGGCAAC+TGG | 0.367968 | 6.4:-58298109 | MS.gene05459:CDS |
| GTTGAGCGTTTGAAGCCTAT+TGG | 0.368912 | 6.4:-58298725 | MS.gene05459:CDS |
| ACCTAATTCACAGGTTCATA+TGG | 0.375183 | 6.4:-58298770 | MS.gene05459:intron |
| AGCCATGTGGCAACTGGGCT+TGG | 0.381350 | 6.4:-58298103 | MS.gene05459:CDS |
| AAATAGTTGTGGACCTCCTT+AGG | 0.408069 | 6.4:+58298341 | None:intergenic |
| AGAATACATACAGAGTTCTC+TGG | 0.424755 | 6.4:+58299405 | None:intergenic |
| GAAAACATACTGGGAGTTCT+CGG | 0.436500 | 6.4:-58296324 | MS.gene05459:CDS |
| ATTCTCATGGCTGCTGATAT+GGG | 0.437064 | 6.4:-58299215 | MS.gene05459:CDS |
| TGGGAATTCTTTGGGGCCTA+AGG | 0.437285 | 6.4:-58298357 | MS.gene05459:CDS |
| AGAAGGGAGTGCTTTCCAAT+AGG | 0.442189 | 6.4:+58298710 | None:intergenic |
| CCTAGGTACCCATATGTAAC+TGG | 0.443031 | 6.4:-58299272 | MS.gene05459:intron |
| ACGGAGGATCCAGTTACATA+TGG | 0.445064 | 6.4:+58299263 | None:intergenic |
| CAGTTGGTGCTGAAGGTTCA+TGG | 0.451533 | 6.4:-58296286 | MS.gene05459:CDS |
| ACCAACTGTTGGATTCTTGA+AGG | 0.455188 | 6.4:+58296301 | None:intergenic |
| TGGAACTCGCTTGTTCTTGG+TGG | 0.475201 | 6.4:-58298275 | MS.gene05459:CDS |
| CACTCCCTTCTAGGTGCTAG+TGG | 0.485120 | 6.4:-58298698 | MS.gene05459:CDS |
| ATTGACAACATGTGGGATGA+TGG | 0.498069 | 6.4:-58298377 | MS.gene05459:CDS |
| ATATCCAAAATTACTGAAGA+AGG | 0.520773 | 6.4:-58296374 | MS.gene05459:CDS |
| GAAAACTTGACATTTGAAGA+AGG | 0.522330 | 6.4:-58298040 | MS.gene05459:CDS |
| AATCCAACAGTTGGTGCTGA+AGG | 0.522601 | 6.4:-58296293 | MS.gene05459:CDS |
| GAACCTTCAGCACCAACTGT+TGG | 0.532387 | 6.4:+58296290 | None:intergenic |
| GGGATGATGGGAATTCTTTG+GGG | 0.539307 | 6.4:-58298364 | MS.gene05459:CDS |
| GTTGCTATCAAGTACAAAGA+TGG | 0.548927 | 6.4:-58299239 | MS.gene05459:CDS |
| GGCCAATTCTCCGCGATGAG+TGG | 0.562260 | 6.4:-58298066 | MS.gene05459:CDS |
| GAATACATACAGAGTTCTCT+GGG | 0.564352 | 6.4:+58299406 | None:intergenic |
| GCCTTCAAGAATCCAACAGT+TGG | 0.564781 | 6.4:-58296302 | MS.gene05459:CDS |
| ACTCCCTTCTAGGTGCTAGT+GGG | 0.571082 | 6.4:-58298697 | MS.gene05459:CDS |
| TTGACAACATGTGGGATGAT+GGG | 0.576024 | 6.4:-58298376 | MS.gene05459:CDS |
| GAATTCTTTGGGGCCTAAGG+AGG | 0.577219 | 6.4:-58298354 | MS.gene05459:CDS |
| TTCCCCACTAGCACCTAGAA+GGG | 0.581322 | 6.4:+58298694 | None:intergenic |
| TTCCAAGCCCAGTTGCCACA+TGG | 0.585589 | 6.4:+58298101 | None:intergenic |
| GCAGCCTTATTGACAACATG+TGG | 0.586058 | 6.4:-58298385 | MS.gene05459:intron |
| GTACAAAGATGGCATTCTCA+TGG | 0.586976 | 6.4:-58299228 | MS.gene05459:CDS |
| CGGAGGATCCAGTTACATAT+GGG | 0.588422 | 6.4:+58299264 | None:intergenic |
| AGGTCCACAACTATTTAACT+CGG | 0.589584 | 6.4:-58298334 | MS.gene05459:CDS |
| CTCCCTTCTAGGTGCTAGTG+GGG | 0.600463 | 6.4:-58298696 | MS.gene05459:CDS |
| GGCTTGGAAATCATCTTGCT+AGG | 0.608634 | 6.4:-58298087 | MS.gene05459:CDS |
| TTACTCACATGAGCTCATCA+AGG | 0.609092 | 6.4:+58298642 | None:intergenic |
| AAGACAGCCATGTGGCAACT+GGG | 0.610482 | 6.4:-58298108 | MS.gene05459:CDS |
| ATTCTCTTTGAAAACATACT+GGG | 0.610546 | 6.4:-58296333 | MS.gene05459:CDS |
| TGTTGACAGCAGACCTGTCA+CGG | 0.624315 | 6.4:+58297978 | None:intergenic |
| TCACCCGAGTTAAATAGTTG+TGG | 0.633695 | 6.4:+58298330 | None:intergenic |
| CTCATGGCTGCTGATATGGG+AGG | 0.637244 | 6.4:-58299212 | MS.gene05459:intron |
| AAGTAAGGCATACCGTGCCA+AGG | 0.647059 | 6.4:+58298231 | None:intergenic |
| GGTCCACAACTATTTAACTC+GGG | 0.657570 | 6.4:-58298333 | MS.gene05459:CDS |
| TTTGTACTTGATAGCAACGA+CGG | 0.663535 | 6.4:+58299244 | None:intergenic |
| AGAACAAGCGAGTTCCACAA+TGG | 0.668612 | 6.4:+58298281 | None:intergenic |
| GGGGCAGAAGTACCTTGGCA+CGG | 0.670563 | 6.4:-58298243 | MS.gene05459:intron |
| CAGCCTTATTGACAACATGT+GGG | 0.687070 | 6.4:-58298384 | MS.gene05459:CDS |
| GCAACAAGTTCAATCCATTG+TGG | 0.696663 | 6.4:-58298295 | MS.gene05459:CDS |
| GTACTTGATAGCAACGACGG+AGG | 0.712266 | 6.4:+58299247 | None:intergenic |
| TAATTACGAAGACAGCCATG+TGG | 0.759873 | 6.4:-58298116 | MS.gene05459:CDS |
| GTTCATATGGATCTACACTG+AGG | 0.793582 | 6.4:-58298757 | MS.gene05459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATATATAGAATAA+AGG | + | chr6.4:58298782-58298801 | None:intergenic | 10.0% |
| !! | ATATAAATTACAATTGTAAA+AGG | + | chr6.4:58296581-58296600 | None:intergenic | 10.0% |
| !! | AATAACATTAATAATTGAAG+AGG | + | chr6.4:58296340-58296359 | None:intergenic | 15.0% |
| !! | AGTTAATTCAGTATTTATAT+AGG | - | chr6.4:58298657-58298676 | MS.gene05459:CDS | 15.0% |
| !! | ATAACATTAATAATTGAAGA+GGG | + | chr6.4:58296339-58296358 | None:intergenic | 15.0% |
| !! | CGAAATAAATTATTAAGTTT+AGG | + | chr6.4:58299211-58299230 | None:intergenic | 15.0% |
| !! | TTGAAAGATAATGTAAAATA+TGG | + | chr6.4:58298012-58298031 | None:intergenic | 15.0% |
| !!! | TTTTAACCAAAAAATTAATG+TGG | + | chr6.4:58298162-58298181 | None:intergenic | 15.0% |
| !! | AAACTTTGATAAGTTGTAAA+TGG | + | chr6.4:58297825-58297844 | None:intergenic | 20.0% |
| !! | AAAGAAGTAAAAACTGAATA+GGG | - | chr6.4:58298582-58298601 | MS.gene05459:intron | 20.0% |
| !! | AAATACAACAAACAAAAATC+AGG | + | chr6.4:58297538-58297557 | None:intergenic | 20.0% |
| !! | AAATACAACAATTGAAATGA+AGG | + | chr6.4:58296679-58296698 | None:intergenic | 20.0% |
| !! | AAATTAATTTAATGGAAGGA+AGG | + | chr6.4:58298367-58298386 | None:intergenic | 20.0% |
| !! | AACTTTGATAAGTTGTAAAT+GGG | + | chr6.4:58297824-58297843 | None:intergenic | 20.0% |
| !! | TTAAAGTGAAATCATTTGTA+TGG | - | chr6.4:58298221-58298240 | MS.gene05459:intron | 20.0% |
| !!! | ACATCTATAAAGAAATTTTC+AGG | + | chr6.4:58296747-58296766 | None:intergenic | 20.0% |
| !!! | ATGAAATTGAAACTTTTACA+CGG | + | chr6.4:58299076-58299095 | None:intergenic | 20.0% |
| !!! | GTTATTTTGATTCAAGTTTA+AGG | - | chr6.4:58296354-58296373 | MS.gene05459:CDS | 20.0% |
| !!! | GTTGTAATATTTAAAGTCAA+GGG | + | chr6.4:58297260-58297279 | None:intergenic | 20.0% |
| !!! | TATTTTTGTATCTTATATCC+AGG | - | chr6.4:58297553-58297572 | MS.gene05459:intron | 20.0% |
| !!! | TCCTTCCATTAAATTAATTT+TGG | - | chr6.4:58298367-58298386 | MS.gene05459:CDS | 20.0% |
| !!! | TGATTATTTTGGATTATGAA+TGG | - | chr6.4:58298048-58298067 | MS.gene05459:CDS | 20.0% |
| !!! | TGCTCAAATTTTGATTATTT+TGG | - | chr6.4:58298037-58298056 | MS.gene05459:CDS | 20.0% |
| !!! | TGTTTGAAATGTAGATAAAT+AGG | + | chr6.4:58297212-58297231 | None:intergenic | 20.0% |
| ! | AAGAAGTAAAAACTGAATAG+GGG | - | chr6.4:58298583-58298602 | MS.gene05459:intron | 25.0% |
| ! | ACTTTGATAAGTTGTAAATG+GGG | + | chr6.4:58297823-58297842 | None:intergenic | 25.0% |
| ! | ATATCCAAAATTACTGAAGA+AGG | - | chr6.4:58299334-58299353 | MS.gene05459:intron | 25.0% |
| ! | ATTATGAATGGAACTTGTAA+TGG | - | chr6.4:58298060-58298079 | MS.gene05459:CDS | 25.0% |
| ! | CAAAGAAGTAAAAACTGAAT+AGG | - | chr6.4:58298581-58298600 | MS.gene05459:intron | 25.0% |
| ! | CAAATAAGTGAAGCAAAAAT+GGG | - | chr6.4:58297136-58297155 | MS.gene05459:intron | 25.0% |
| ! | GAAAATAAAGGATCATCTAA+TGG | - | chr6.4:58298461-58298480 | MS.gene05459:intron | 25.0% |
| ! | GCCAAAATTAATTTAATGGA+AGG | + | chr6.4:58298371-58298390 | None:intergenic | 25.0% |
| ! | GTGTAAAAGTTTCAATTTCA+TGG | - | chr6.4:58299075-58299094 | MS.gene05459:intron | 25.0% |
| ! | TAAATGTCACTAAAATGTAC+TGG | - | chr6.4:58297107-58297126 | MS.gene05459:intron | 25.0% |
| ! | TCAAATAAGTGAAGCAAAAA+TGG | - | chr6.4:58297135-58297154 | MS.gene05459:intron | 25.0% |
| ! | TCCAGCCAAAATTAATTTAA+TGG | + | chr6.4:58298375-58298394 | None:intergenic | 25.0% |
| ! | TTAGTATTCCAAATCATTCA+TGG | + | chr6.4:58298893-58298912 | None:intergenic | 25.0% |
| ! | TTGTTGAATATGTTATATGC+CGG | - | chr6.4:58299162-58299181 | MS.gene05459:intron | 25.0% |
| !! | AATACAATCTCCTTTTAGAT+GGG | - | chr6.4:58298819-58298838 | MS.gene05459:intron | 25.0% |
| !! | ATTCTCTTTGAAAACATACT+GGG | - | chr6.4:58299375-58299394 | MS.gene05459:intron | 25.0% |
| !! | CTATTCAGTTTTTACTTCTT+TGG | + | chr6.4:58298583-58298602 | None:intergenic | 25.0% |
| !! | GGTTGTAATATTTAAAGTCA+AGG | + | chr6.4:58297261-58297280 | None:intergenic | 25.0% |
| !! | TAATACAATCTCCTTTTAGA+TGG | - | chr6.4:58298818-58298837 | MS.gene05459:intron | 25.0% |
| !!! | ATAAGTTTTGTTTCCTTACA+AGG | - | chr6.4:58296798-58296817 | MS.gene05459:intron | 25.0% |
| !!! | ATTTATATAGGTTGATTCGT+CGG | - | chr6.4:58298669-58298688 | MS.gene05459:CDS | 25.0% |
| !!! | TAAGTTTTGTTTCCTTACAA+GGG | - | chr6.4:58296799-58296818 | MS.gene05459:intron | 25.0% |
| !!! | TCCATTAAATTAATTTTGGC+TGG | - | chr6.4:58298371-58298390 | MS.gene05459:CDS | 25.0% |
| AAGTAAAAGAGTGAACAAGA+AGG | + | chr6.4:58296607-58296626 | None:intergenic | 30.0% | |
| AAGTAAATTGATGAAGCTGA+TGG | + | chr6.4:58297183-58297202 | None:intergenic | 30.0% | |
| ACAACAAACAAAAATCAGGT+AGG | + | chr6.4:58297534-58297553 | None:intergenic | 30.0% | |
| ACAGTTATATGAGAATCATG+AGG | + | chr6.4:58297282-58297301 | None:intergenic | 30.0% | |
| ACATTAATAATTGAAGAGGG+AGG | + | chr6.4:58296336-58296355 | None:intergenic | 30.0% | |
| ACCTTAGTAGCAGAAAATAA+AGG | - | chr6.4:58298449-58298468 | MS.gene05459:intron | 30.0% | |
| ACGAGAGTAAATGTCAAAAT+TGG | - | chr6.4:58298523-58298542 | MS.gene05459:intron | 30.0% | |
| CGAGAGTAAATGTCAAAATT+GGG | - | chr6.4:58298524-58298543 | MS.gene05459:intron | 30.0% | |
| CTTTGATAAGTTGTAAATGG+GGG | + | chr6.4:58297822-58297841 | None:intergenic | 30.0% | |
| GAAAACTTGACATTTGAAGA+AGG | - | chr6.4:58297668-58297687 | MS.gene05459:intron | 30.0% | |
| GAGAGTAAATGTCAAAATTG+GGG | - | chr6.4:58298525-58298544 | MS.gene05459:intron | 30.0% | |
| GATGCTAATATGAATTGATG+TGG | + | chr6.4:58296534-58296553 | None:intergenic | 30.0% | |
| TAATTTAATGGAAGGAAGGT+AGG | + | chr6.4:58298363-58298382 | None:intergenic | 30.0% | |
| TATCAGCTATATAGAACTAG+AGG | + | chr6.4:58297904-58297923 | None:intergenic | 30.0% | |
| TCTGTTCATGTATATGTGTT+AGG | - | chr6.4:58299030-58299049 | MS.gene05459:intron | 30.0% | |
| TGTTGAATATGTTATATGCC+GGG | - | chr6.4:58299163-58299182 | MS.gene05459:intron | 30.0% | |
| TTCAATCCATCAATTATCAG+TGG | + | chr6.4:58296916-58296935 | None:intergenic | 30.0% | |
| TTTGATAAGTTGTAAATGGG+GGG | + | chr6.4:58297821-58297840 | None:intergenic | 30.0% | |
| ! | AATGGGTGTGATTAGTTAAA+TGG | - | chr6.4:58297153-58297172 | MS.gene05459:intron | 30.0% |
| ! | ATGTTTTCAAAGAGAATGGT+GGG | + | chr6.4:58299372-58299391 | None:intergenic | 30.0% |
| ! | CAGTATGTTTTCAAAGAGAA+TGG | + | chr6.4:58299376-58299395 | None:intergenic | 30.0% |
| ! | CATTCTCTTTGAAAACATAC+TGG | - | chr6.4:58299374-58299393 | MS.gene05459:intron | 30.0% |
| ! | TAGTTCTATATAGCTGATAG+TGG | - | chr6.4:58297905-58297924 | MS.gene05459:intron | 30.0% |
| ! | TATGTTTTCAAAGAGAATGG+TGG | + | chr6.4:58299373-58299392 | None:intergenic | 30.0% |
| ! | TGTTCACTCTTTTACTTTGT+TGG | - | chr6.4:58296610-58296629 | MS.gene05459:intron | 30.0% |
| !! | AATTTTGACATTTACTCTCG+TGG | + | chr6.4:58298524-58298543 | None:intergenic | 30.0% |
| !! | ATTTAAAGCACTTTTGCTTG+AGG | + | chr6.4:58296716-58296735 | None:intergenic | 30.0% |
| !!! | AGGAAGCCACATTAATTTTT+TGG | - | chr6.4:58298153-58298172 | MS.gene05459:intron | 30.0% |
| !!! | TCCTTTATTTTCTGCTACTA+AGG | + | chr6.4:58298453-58298472 | None:intergenic | 30.0% |
| AAGTAAAAACTGAATAGGGG+TGG | - | chr6.4:58298586-58298605 | MS.gene05459:intron | 35.0% | |
| ACAGAAAATTCAGAGAACTG+CGG | + | chr6.4:58298116-58298135 | None:intergenic | 35.0% | |
| ACCTAATTCACAGGTTCATA+TGG | - | chr6.4:58296938-58296957 | MS.gene05459:intron | 35.0% | |
| ACTGGCATAATGTCAAAATC+TGG | - | chr6.4:58298943-58298962 | MS.gene05459:intron | 35.0% | |
| AGAATACATACAGAGTTCTC+TGG | + | chr6.4:58296306-58296325 | None:intergenic | 35.0% | |
| AGGTCCACAACTATTTAACT+CGG | - | chr6.4:58297374-58297393 | MS.gene05459:intron | 35.0% | |
| AGTAAAAACTGAATAGGGGT+GGG | - | chr6.4:58298587-58298606 | MS.gene05459:intron | 35.0% | |
| AGTTGTGCAAATCAATACAC+TGG | - | chr6.4:58298925-58298944 | MS.gene05459:intron | 35.0% | |
| ATGATGCCACTGATAATTGA+TGG | - | chr6.4:58296907-58296926 | MS.gene05459:intron | 35.0% | |
| ATGTCAAAATTGGGGTTTGA+AGG | - | chr6.4:58298533-58298552 | MS.gene05459:intron | 35.0% | |
| CAGAAGAAAAGCAGTAAAAC+TGG | + | chr6.4:58296825-58296844 | None:intergenic | 35.0% | |
| CTGAATGACAAGACAAAGTA+AGG | + | chr6.4:58297495-58297514 | None:intergenic | 35.0% | |
| GAATACATACAGAGTTCTCT+GGG | + | chr6.4:58296305-58296324 | None:intergenic | 35.0% | |
| GACTTGAGTTAAGAGTCATA+AGG | + | chr6.4:58298321-58298340 | None:intergenic | 35.0% | |
| GATTGAATGACCTAATTCAC+AGG | - | chr6.4:58296929-58296948 | MS.gene05459:intron | 35.0% | |
| GTTGCTATCAAGTACAAAGA+TGG | - | chr6.4:58296469-58296488 | MS.gene05459:intron | 35.0% | |
| TAACTCGGGTGATGTATAAT+AGG | - | chr6.4:58297389-58297408 | MS.gene05459:intron | 35.0% | |
| TAATGTCAAAATCTGGTGAG+TGG | - | chr6.4:58298950-58298969 | MS.gene05459:intron | 35.0% | |
| TAGGAAAGTTCCCATCTAAA+AGG | + | chr6.4:58298832-58298851 | None:intergenic | 35.0% | |
| TATATCCAGGTTAGCATGAT+TGG | - | chr6.4:58297566-58297585 | MS.gene05459:intron | 35.0% | |
| TATTCTATGCCAAGCTATGT+TGG | + | chr6.4:58298403-58298422 | None:intergenic | 35.0% | |
| TCCATATGAACCTGTGAATT+AGG | + | chr6.4:58296942-58296961 | None:intergenic | 35.0% | |
| TTGTAATTACCTTTCCTACG+CGG | - | chr6.4:58296640-58296659 | MS.gene05459:intron | 35.0% | |
| ! | AGCACCTTCTTCAGTAATTT+TGG | + | chr6.4:58299341-58299360 | None:intergenic | 35.0% |
| ! | TTTGTACTTGATAGCAACGA+CGG | + | chr6.4:58296467-58296486 | None:intergenic | 35.0% |
| !! | GTTCTTGGTGGTGTTAAAAA+GGG | - | chr6.4:58297445-58297464 | MS.gene05459:intron | 35.0% |
| !! | TGGATTTGCTTTCACTTTTC+TGG | - | chr6.4:58298702-58298721 | MS.gene05459:CDS | 35.0% |
| !! | TGTTCTTGGTGGTGTTAAAA+AGG | - | chr6.4:58297444-58297463 | MS.gene05459:intron | 35.0% |
| !! | TTCTTGGTGGTGTTAAAAAG+GGG | - | chr6.4:58297446-58297465 | MS.gene05459:intron | 35.0% |
| !!! | TCACTTTTCTGGTTTTGCTT+GGG | - | chr6.4:58298713-58298732 | MS.gene05459:CDS | 35.0% |
| !!! | TTCACTTTTCTGGTTTTGCT+TGG | - | chr6.4:58298712-58298731 | MS.gene05459:CDS | 35.0% |
| AAAATCTAACCGCGTAGGAA+AGG | + | chr6.4:58296652-58296671 | None:intergenic | 40.0% | |
| AAATAGTTGTGGACCTCCTT+AGG | + | chr6.4:58297370-58297389 | None:intergenic | 40.0% | |
| AACTCAAGTCCAGAGTTATG+AGG | - | chr6.4:58298331-58298350 | MS.gene05459:CDS | 40.0% | |
| AAGTCAAGGGTAAAATACGC+AGG | + | chr6.4:58297247-58297266 | None:intergenic | 40.0% | |
| ACATGTTGTCAATAAGGCTG+CGG | + | chr6.4:58297324-58297343 | None:intergenic | 40.0% | |
| ACCAACTGTTGGATTCTTGA+AGG | + | chr6.4:58299410-58299429 | None:intergenic | 40.0% | |
| ACGCAGCAAGAAAATGAAAC+AGG | + | chr6.4:58297770-58297789 | None:intergenic | 40.0% | |
| AGGAAACATCCTCATAACTC+TGG | + | chr6.4:58298343-58298362 | None:intergenic | 40.0% | |
| AGGTACAGCCTTCATTTCTT+AGG | + | chr6.4:58298433-58298452 | None:intergenic | 40.0% | |
| ATCGACCACCTAAGAAATGA+AGG | - | chr6.4:58298422-58298441 | MS.gene05459:intron | 40.0% | |
| ATTAAGTTTAGGCACAGTGC+AGG | + | chr6.4:58299200-58299219 | None:intergenic | 40.0% | |
| ATTCTCATGGCTGCTGATAT+GGG | - | chr6.4:58296493-58296512 | MS.gene05459:intron | 40.0% | |
| ATTGACAACATGTGGGATGA+TGG | - | chr6.4:58297331-58297350 | MS.gene05459:intron | 40.0% | |
| CAGTTACATATGGGTACCTA+GGG | + | chr6.4:58296438-58296457 | None:intergenic | 40.0% | |
| CATCCCACATGTTGTCAATA+AGG | + | chr6.4:58297330-58297349 | None:intergenic | 40.0% | |
| CTTTCCTATCTTAGAGCCAT+CGG | - | chr6.4:58298844-58298863 | MS.gene05459:intron | 40.0% | |
| GAAAACATACTGGGAGTTCT+CGG | - | chr6.4:58299384-58299403 | MS.gene05459:intron | 40.0% | |
| GCAACAAGTTCAATCCATTG+TGG | - | chr6.4:58297413-58297432 | MS.gene05459:intron | 40.0% | |
| GCTTACTGCCATGAATGATT+TGG | - | chr6.4:58298882-58298901 | MS.gene05459:intron | 40.0% | |
| GGTAAACATGTGATGTGAGT+TGG | + | chr6.4:58298280-58298299 | None:intergenic | 40.0% | |
| GGTCCACAACTATTTAACTC+GGG | - | chr6.4:58297375-58297394 | MS.gene05459:intron | 40.0% | |
| GTACAAAGATGGCATTCTCA+TGG | - | chr6.4:58296480-58296499 | MS.gene05459:intron | 40.0% | |
| GTCATTCAGTCTAACAGTTG+AGG | - | chr6.4:58297506-58297525 | MS.gene05459:intron | 40.0% | |
| GTTCATATGGATCTACACTG+AGG | - | chr6.4:58296951-58296970 | MS.gene05459:intron | 40.0% | |
| TAATTACGAAGACAGCCATG+TGG | - | chr6.4:58297592-58297611 | MS.gene05459:intron | 40.0% | |
| TACAGCCTTCATTTCTTAGG+TGG | + | chr6.4:58298430-58298449 | None:intergenic | 40.0% | |
| TCAAATAACTTTCCCTCCGT+GGG | + | chr6.4:58298619-58298638 | None:intergenic | 40.0% | |
| TCACCCGAGTTAAATAGTTG+TGG | + | chr6.4:58297381-58297400 | None:intergenic | 40.0% | |
| TTACTCACATGAGCTCATCA+AGG | + | chr6.4:58297069-58297088 | None:intergenic | 40.0% | |
| TTGACAACATGTGGGATGAT+GGG | - | chr6.4:58297332-58297351 | MS.gene05459:intron | 40.0% | |
| ! | AGTTTTCATTCCACTCATCG+CGG | + | chr6.4:58297655-58297674 | None:intergenic | 40.0% |
| !! | AAAACCGATGGCTCTAAGAT+AGG | + | chr6.4:58298851-58298870 | None:intergenic | 40.0% |
| !! | CAGCCTTATTGACAACATGT+GGG | - | chr6.4:58297324-58297343 | MS.gene05459:intron | 40.0% |
| !! | TGGGATGATGGGAATTCTTT+GGG | - | chr6.4:58297343-58297362 | MS.gene05459:intron | 40.0% |
| !! | TTGCTTATTTTCTGTGCCCT+AGG | - | chr6.4:58296419-58296438 | MS.gene05459:intron | 40.0% |
| !!! | ATCTTAGAGCCATCGGTTTT+TGG | - | chr6.4:58298851-58298870 | MS.gene05459:intron | 40.0% |
| !!! | CACTTTTCTGGTTTTGCTTG+GGG | - | chr6.4:58298714-58298733 | MS.gene05459:CDS | 40.0% |
| AACTCTCAGCCGACAAGAAA+CGG | + | chr6.4:58298750-58298769 | None:intergenic | 45.0% | |
| AAGTTGTAAATGGGGGGAGA+GGG | + | chr6.4:58297815-58297834 | None:intergenic | 45.0% | |
| ACGGAGGATCCAGTTACATA+TGG | + | chr6.4:58296448-58296467 | None:intergenic | 45.0% | |
| AGAACAAGCGAGTTCCACAA+TGG | + | chr6.4:58297430-58297449 | None:intergenic | 45.0% | |
| AGGATGTCACGTTCAGATCT+AGG | + | chr6.4:58298301-58298320 | None:intergenic | 45.0% | |
| ATAATTGAAGAGGGAGGACG+AGG | + | chr6.4:58296330-58296349 | None:intergenic | 45.0% | |
| CAAGCAAGCAACCATCATCT+AGG | + | chr6.4:58298985-58299004 | None:intergenic | 45.0% | |
| CAGTAAAACTGGCCCTTGTA+AGG | + | chr6.4:58296814-58296833 | None:intergenic | 45.0% | |
| CATTCTCATGGCTGCTGATA+TGG | - | chr6.4:58296492-58296511 | MS.gene05459:intron | 45.0% | |
| CCAGTTACATATGGGTACCT+AGG | + | chr6.4:58296439-58296458 | None:intergenic | 45.0% | |
| CCTAGGTACCCATATGTAAC+TGG | - | chr6.4:58296436-58296455 | MS.gene05459:intron | 45.0% | |
| CGGAGGATCCAGTTACATAT+GGG | + | chr6.4:58296447-58296466 | None:intergenic | 45.0% | |
| CTAGTGCAACCAAAAACCGA+TGG | + | chr6.4:58298863-58298882 | None:intergenic | 45.0% | |
| CTCAAATAACTTTCCCTCCG+TGG | + | chr6.4:58298620-58298639 | None:intergenic | 45.0% | |
| GCAGTAAAATCTAACCGCGT+AGG | + | chr6.4:58296657-58296676 | None:intergenic | 45.0% | |
| GCCTTCAAGAATCCAACAGT+TGG | - | chr6.4:58299406-58299425 | MS.gene05459:intron | 45.0% | |
| GGCTTGGAAATCATCTTGCT+AGG | - | chr6.4:58297621-58297640 | MS.gene05459:intron | 45.0% | |
| GTCTGCGAGAGTAAAGTTGA+AGG | + | chr6.4:58298561-58298580 | None:intergenic | 45.0% | |
| GTCTGCTGTCAACAAGATTC+AGG | - | chr6.4:58297739-58297758 | MS.gene05459:intron | 45.0% | |
| TAACGCCAATCATGCTAACC+TGG | + | chr6.4:58297574-58297593 | None:intergenic | 45.0% | |
| TAAGTTGTAAATGGGGGGAG+AGG | + | chr6.4:58297816-58297835 | None:intergenic | 45.0% | |
| TAATTGAAGAGGGAGGACGA+GGG | + | chr6.4:58296329-58296348 | None:intergenic | 45.0% | |
| TGATCAACTAGCATGCCCAT+AGG | - | chr6.4:58297936-58297955 | MS.gene05459:intron | 45.0% | |
| TGGATCAGACCAACATAGCT+TGG | - | chr6.4:58298391-58298410 | MS.gene05459:intron | 45.0% | |
| TGGGCATGCTAGTTGATCAA+AGG | + | chr6.4:58297935-58297954 | None:intergenic | 45.0% | |
| TGTACACGCTGTCACTGTTA+AGG | - | chr6.4:58298133-58298152 | MS.gene05459:CDS | 45.0% | |
| TTGTGGAACTCGCTTGTTCT+TGG | - | chr6.4:58297430-58297449 | MS.gene05459:intron | 45.0% | |
| ! | GGCTAGTTACTCCTAGATGA+TGG | - | chr6.4:58298971-58298990 | MS.gene05459:intron | 45.0% |
| ! | GTTGAGCGTTTGAAGCCTAT+TGG | - | chr6.4:58296983-58297002 | MS.gene05459:intron | 45.0% |
| ! | TTTTTCCCAAGTGTAGCACC+TGG | + | chr6.4:58297969-58297988 | None:intergenic | 45.0% |
| !! | AAAAAGGGGCAGAAGTACCT+TGG | - | chr6.4:58297460-58297479 | MS.gene05459:intron | 45.0% |
| !! | AATCCAACAGTTGGTGCTGA+AGG | - | chr6.4:58299415-58299434 | MS.gene05459:intron | 45.0% |
| !! | AGAAGGGAGTGCTTTCCAAT+AGG | + | chr6.4:58297001-58297020 | None:intergenic | 45.0% |
| !! | ATAGGTTGATTCGTCGGCAT+GGG | - | chr6.4:58298675-58298694 | MS.gene05459:CDS | 45.0% |
| !! | ATTGGAAAGCACTCCCTTCT+AGG | - | chr6.4:58297001-58297020 | MS.gene05459:intron | 45.0% |
| !! | GCAGCCTTATTGACAACATG+TGG | - | chr6.4:58297323-58297342 | MS.gene05459:intron | 45.0% |
| !! | GGGATGATGGGAATTCTTTG+GGG | - | chr6.4:58297344-58297363 | MS.gene05459:intron | 45.0% |
| !! | GTGGGATGATGGGAATTCTT+TGG | - | chr6.4:58297342-58297361 | MS.gene05459:intron | 45.0% |
| !! | TATAGGTTGATTCGTCGGCA+TGG | - | chr6.4:58298674-58298693 | MS.gene05459:CDS | 45.0% |
| AAGACAGCCATGTGGCAACT+GGG | - | chr6.4:58297600-58297619 | MS.gene05459:intron | 50.0% | |
| AAGTAAGGCATACCGTGCCA+AGG | + | chr6.4:58297480-58297499 | None:intergenic | 50.0% | |
| ACTCCCTTCTAGGTGCTAGT+GGG | - | chr6.4:58297011-58297030 | MS.gene05459:intron | 50.0% | |
| CACGGATGCTGAACAAGATG+AGG | + | chr6.4:58299058-58299077 | None:intergenic | 50.0% | |
| GAACCTTCAGCACCAACTGT+TGG | + | chr6.4:58299421-58299440 | None:intergenic | 50.0% | |
| GTGCAGGCTCATAGTTAACC+CGG | + | chr6.4:58299184-58299203 | None:intergenic | 50.0% | |
| TGGAACTCGCTTGTTCTTGG+TGG | - | chr6.4:58297433-58297452 | MS.gene05459:intron | 50.0% | |
| TGTTGACAGCAGACCTGTCA+CGG | + | chr6.4:58297733-58297752 | None:intergenic | 50.0% | |
| TTCCACTCATCGCGGAGAAT+TGG | + | chr6.4:58297647-58297666 | None:intergenic | 50.0% | |
| TTCCCCACTAGCACCTAGAA+GGG | + | chr6.4:58297017-58297036 | None:intergenic | 50.0% | |
| TTTCCCCACTAGCACCTAGA+AGG | + | chr6.4:58297018-58297037 | None:intergenic | 50.0% | |
| ! | GAGTGCTTTTGTACCGTGAC+AGG | - | chr6.4:58297717-58297736 | MS.gene05459:intron | 50.0% |
| ! | GTACTTGATAGCAACGACGG+AGG | + | chr6.4:58296464-58296483 | None:intergenic | 50.0% |
| !! | CAGTTGGTGCTGAAGGTTCA+TGG | - | chr6.4:58299422-58299441 | MS.gene05459:CDS | 50.0% |
| !! | GAATTCTTTGGGGCCTAAGG+AGG | - | chr6.4:58297354-58297373 | MS.gene05459:intron | 50.0% |
| !! | TGGGAATTCTTTGGGGCCTA+AGG | - | chr6.4:58297351-58297370 | MS.gene05459:intron | 50.0% |
| ACTAGCATGCCCATAGGTCG+AGG | - | chr6.4:58297942-58297961 | MS.gene05459:intron | 55.0% | |
| CACGCCAGACCGTTTCTTGT+CGG | - | chr6.4:58298738-58298757 | MS.gene05459:CDS | 55.0% | |
| CACTCCCTTCTAGGTGCTAG+TGG | - | chr6.4:58297010-58297029 | MS.gene05459:intron | 55.0% | |
| CTCATGGCTGCTGATATGGG+AGG | - | chr6.4:58296496-58296515 | MS.gene05459:intron | 55.0% | |
| CTCCCTTCTAGGTGCTAGTG+GGG | - | chr6.4:58297012-58297031 | MS.gene05459:intron | 55.0% | |
| GAAGACAGCCATGTGGCAAC+TGG | - | chr6.4:58297599-58297618 | MS.gene05459:intron | 55.0% | |
| TCAGCCGACAAGAAACGGTC+TGG | + | chr6.4:58298745-58298764 | None:intergenic | 55.0% | |
| TTCCAAGCCCAGTTGCCACA+TGG | + | chr6.4:58297610-58297629 | None:intergenic | 55.0% | |
| TTGTAAATGGGGGGAGAGGG+AGG | + | chr6.4:58297812-58297831 | None:intergenic | 55.0% | |
| ! | GAGGTCCAGGTGCTACACTT+GGG | - | chr6.4:58297961-58297980 | MS.gene05459:intron | 55.0% |
| AGCACCTGGACCTCGACCTA+TGG | + | chr6.4:58297955-58297974 | None:intergenic | 60.0% | |
| AGCCATGTGGCAACTGGGCT+TGG | - | chr6.4:58297605-58297624 | MS.gene05459:intron | 60.0% | |
| ATGCCCATAGGTCGAGGTCC+AGG | - | chr6.4:58297948-58297967 | MS.gene05459:intron | 60.0% | |
| CGACAAGAAACGGTCTGGCG+TGG | + | chr6.4:58298740-58298759 | None:intergenic | 60.0% | |
| GATTCGTCGGCATGGGAGTC+TGG | - | chr6.4:58298682-58298701 | MS.gene05459:CDS | 60.0% | |
| GCACCTGGACCTCGACCTAT+GGG | + | chr6.4:58297954-58297973 | None:intergenic | 60.0% | |
| GGCCAATTCTCCGCGATGAG+TGG | - | chr6.4:58297642-58297661 | MS.gene05459:intron | 60.0% | |
| ! | CGAGGTCCAGGTGCTACACT+TGG | - | chr6.4:58297960-58297979 | MS.gene05459:intron | 60.0% |
| !! | GGGGCAGAAGTACCTTGGCA+CGG | - | chr6.4:58297465-58297484 | MS.gene05459:intron | 60.0% |
| ! | TAGGGGTGGGCTTGCACCCA+CGG | - | chr6.4:58298600-58298619 | MS.gene05459:intron | 65.0% |
| ! | GGTGGGCTTGCACCCACGGA+GGG | - | chr6.4:58298604-58298623 | MS.gene05459:intron | 70.0% |
| ! | GGGTGGGCTTGCACCCACGG+AGG | - | chr6.4:58298603-58298622 | MS.gene05459:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 58296283 | 58299447 | 58296283 | ID=MS.gene05459 |
| chr6.4 | mRNA | 58296283 | 58299447 | 58296283 | ID=MS.gene05459.t1;Parent=MS.gene05459 |
| chr6.4 | exon | 58299416 | 58299447 | 58299416 | ID=MS.gene05459.t1.exon1;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58299416 | 58299447 | 58299416 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| chr6.4 | exon | 58299213 | 58299289 | 58299213 | ID=MS.gene05459.t1.exon2;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58299213 | 58299289 | 58299213 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| chr6.4 | exon | 58298650 | 58298779 | 58298650 | ID=MS.gene05459.t1.exon3;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58298650 | 58298779 | 58298650 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| chr6.4 | exon | 58298244 | 58298403 | 58298244 | ID=MS.gene05459.t1.exon4;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58298244 | 58298403 | 58298244 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| chr6.4 | exon | 58297970 | 58298155 | 58297970 | ID=MS.gene05459.t1.exon5;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58297970 | 58298155 | 58297970 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| chr6.4 | exon | 58296283 | 58296396 | 58296283 | ID=MS.gene05459.t1.exon6;Parent=MS.gene05459.t1 |
| chr6.4 | CDS | 58296283 | 58296396 | 58296283 | ID=cds.MS.gene05459.t1;Parent=MS.gene05459.t1 |
| Gene Sequence |
| Protein sequence |
