Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76217.t1 | XP_013470289.1 | 100 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 3.40E-128 | 467.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76217.t1 | Q9M4T8 | 98.3 | 237 | 4 | 0 | 1 | 237 | 1 | 237 | 4.5e-129 | 461.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76217.t1 | I3SSX1 | 100.0 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 2.4e-128 | 467.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76217.t1 | MTR_1g112250 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 6.99e-179 | 490 |
| MS.gene76217.t1 | MTR_6g013300 | 62.150 | 214 | 64 | 5 | 31 | 237 | 133 | 336 | 5.84e-75 | 230 |
| MS.gene76217.t1 | MTR_5g016590 | 42.324 | 241 | 121 | 7 | 8 | 236 | 5 | 239 | 5.90e-59 | 187 |
| MS.gene76217.t1 | MTR_7g070070 | 45.161 | 217 | 107 | 5 | 8 | 218 | 5 | 215 | 3.07e-58 | 185 |
| MS.gene76217.t1 | MTR_2g016050 | 40.343 | 233 | 129 | 5 | 6 | 234 | 2 | 228 | 1.55e-50 | 165 |
| MS.gene76217.t1 | MTR_8g075320 | 41.593 | 226 | 124 | 4 | 8 | 231 | 4 | 223 | 1.73e-50 | 165 |
| MS.gene76217.t1 | MTR_0167s0060 | 35.526 | 228 | 142 | 2 | 6 | 231 | 4 | 228 | 1.86e-47 | 157 |
| MS.gene76217.t1 | MTR_1g022410 | 46.154 | 182 | 93 | 2 | 3 | 184 | 1 | 177 | 3.76e-47 | 157 |
| MS.gene76217.t1 | MTR_8g464460 | 34.199 | 231 | 142 | 5 | 8 | 231 | 9 | 236 | 1.82e-40 | 139 |
| MS.gene76217.t1 | MTR_2g060830 | 32.900 | 231 | 145 | 5 | 8 | 231 | 9 | 236 | 9.43e-39 | 135 |
| MS.gene76217.t1 | MTR_6g024135 | 34.783 | 207 | 120 | 2 | 6 | 206 | 6 | 203 | 4.23e-38 | 133 |
| MS.gene76217.t1 | MTR_4g012740 | 32.127 | 221 | 105 | 4 | 3 | 184 | 232 | 446 | 1.72e-24 | 101 |
| MS.gene76217.t1 | MTR_4g057090 | 34.239 | 184 | 97 | 7 | 11 | 184 | 91 | 260 | 2.26e-17 | 80.1 |
| MS.gene76217.t1 | MTR_3g089040 | 28.313 | 166 | 107 | 3 | 34 | 196 | 54 | 210 | 1.15e-14 | 71.6 |
| MS.gene76217.t1 | MTR_5g006840 | 30.464 | 151 | 94 | 3 | 45 | 192 | 13 | 155 | 9.80e-13 | 65.5 |
| MS.gene76217.t1 | MTR_5g012470 | 28.249 | 177 | 114 | 4 | 42 | 213 | 10 | 178 | 1.17e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76217.t1 | AT3G14290 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 1.10e-175 | 482 |
| MS.gene76217.t1 | AT1G53850 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.38e-175 | 481 |
| MS.gene76217.t1 | AT1G53850 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.38e-175 | 481 |
| MS.gene76217.t1 | AT3G22110 | 41.494 | 241 | 123 | 7 | 8 | 236 | 5 | 239 | 1.09e-56 | 181 |
| MS.gene76217.t1 | AT5G66140 | 43.000 | 200 | 108 | 3 | 8 | 205 | 4 | 199 | 5.82e-48 | 159 |
| MS.gene76217.t1 | AT1G16470 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.49e-47 | 157 |
| MS.gene76217.t1 | AT1G16470 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.49e-47 | 157 |
| MS.gene76217.t1 | AT3G51260 | 41.038 | 212 | 117 | 4 | 7 | 216 | 3 | 208 | 1.57e-47 | 157 |
| MS.gene76217.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene76217.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene76217.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene76217.t1 | AT3G51260 | 42.500 | 200 | 109 | 3 | 8 | 205 | 4 | 199 | 2.55e-47 | 157 |
| MS.gene76217.t1 | AT5G42790 | 39.506 | 243 | 125 | 4 | 3 | 234 | 1 | 232 | 1.92e-46 | 155 |
| MS.gene76217.t1 | AT1G47250 | 45.856 | 181 | 93 | 2 | 3 | 183 | 1 | 176 | 2.94e-46 | 155 |
| MS.gene76217.t1 | AT5G35590 | 35.498 | 231 | 139 | 5 | 8 | 231 | 9 | 236 | 2.76e-41 | 141 |
| MS.gene76217.t1 | AT2G27020 | 33.333 | 207 | 123 | 2 | 6 | 206 | 6 | 203 | 5.55e-38 | 133 |
| MS.gene76217.t1 | AT2G05840 | 34.434 | 212 | 132 | 4 | 8 | 215 | 9 | 217 | 2.04e-37 | 130 |
| MS.gene76217.t1 | AT2G05840 | 34.419 | 215 | 134 | 4 | 8 | 218 | 9 | 220 | 2.70e-37 | 131 |
| MS.gene76217.t1 | AT2G27020 | 33.333 | 207 | 123 | 2 | 6 | 206 | 108 | 305 | 8.22e-37 | 132 |
| MS.gene76217.t1 | AT4G15165 | 31.535 | 241 | 105 | 6 | 8 | 236 | 5 | 197 | 3.71e-35 | 124 |
| MS.gene76217.t1 | AT2G05840 | 35.263 | 190 | 118 | 3 | 8 | 195 | 9 | 195 | 5.92e-35 | 124 |
| MS.gene76217.t1 | AT3G26340 | 26.500 | 200 | 132 | 5 | 27 | 220 | 48 | 238 | 7.60e-15 | 72.4 |
| MS.gene76217.t1 | AT1G13060 | 25.654 | 191 | 129 | 4 | 34 | 220 | 57 | 238 | 1.05e-13 | 69.3 |
| MS.gene76217.t1 | AT4G14800 | 28.652 | 178 | 115 | 4 | 45 | 218 | 13 | 182 | 2.94e-12 | 63.9 |
| MS.gene76217.t1 | AT5G40580 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.84e-12 | 64.7 |
| MS.gene76217.t1 | AT5G40580 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.84e-12 | 64.7 |
| MS.gene76217.t1 | AT3G27430 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 7.31e-12 | 63.9 |
| MS.gene76217.t1 | AT4G14800 | 28.495 | 186 | 121 | 4 | 45 | 218 | 13 | 198 | 7.47e-12 | 63.2 |
| MS.gene76217.t1 | AT3G27430 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 9.13e-12 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATCCTTCTGGCACATTT+TGG | 0.189061 | 1.1:+79316996 | MS.gene76217:CDS |
| TCCCGAGGGACGTTTGTTTC+AGG | 0.218421 | 1.1:+79314102 | MS.gene76217:CDS |
| GTGACCTAGCCTTGCGCTTT+GGG | 0.251856 | 1.1:+79315508 | MS.gene76217:CDS |
| ATATGCAATTGAAGCTATTA+AGG | 0.287746 | 1.1:+79314129 | MS.gene76217:CDS |
| CTTTGGCAGTCTCGACCATT+TGG | 0.312188 | 1.1:+79315968 | MS.gene76217:intron |
| GGAGTGTCTCTCCTTATTGC+TGG | 0.335194 | 1.1:+79315989 | MS.gene76217:CDS |
| TGTGACCTAGCCTTGCGCTT+TGG | 0.345737 | 1.1:+79315507 | MS.gene76217:CDS |
| CAGAATCACAGGTTCTCTTA+TGG | 0.347192 | 1.1:+79315447 | MS.gene76217:intron |
| CAATGCAATGCAAAGGCTAT+TGG | 0.347609 | 1.1:+79317019 | MS.gene76217:CDS |
| TCTCGTCATGGCCAGCAATA+AGG | 0.348529 | 1.1:-79316000 | None:intergenic |
| CAGCAGTGTGGAGAAAATTA+TGG | 0.366170 | 1.1:+79315183 | MS.gene76217:CDS |
| ATCAATTCTGAAGCAAGTTA+TGG | 0.388035 | 1.1:+79318319 | MS.gene76217:CDS |
| CCAACAACGTTGACATTGCC+AGG | 0.408754 | 1.1:+79318450 | MS.gene76217:CDS |
| CCTGGCAATGTCAACGTTGT+TGG | 0.426746 | 1.1:-79318450 | None:intergenic |
| CAGCTTGGATCAACTGCGAT+TGG | 0.442542 | 1.1:+79314251 | MS.gene76217:intron |
| CTGGCAATGTCAACGTTGTT+GGG | 0.454160 | 1.1:-79318449 | None:intergenic |
| GCGTATTACTTCGCCTCTAC+TGG | 0.457074 | 1.1:+79314313 | MS.gene76217:CDS |
| AGATATTACACTGATCCTTC+TGG | 0.466365 | 1.1:+79316986 | MS.gene76217:intron |
| AACCTGAAACAAACGTCCCT+CGG | 0.497703 | 1.1:-79314104 | None:intergenic |
| AATGCAAAGGCTATTGGTTC+AGG | 0.500036 | 1.1:+79317025 | MS.gene76217:CDS |
| CTAGCCTTGCGCTTTGGGGA+AGG | 0.509941 | 1.1:+79315513 | MS.gene76217:CDS |
| ATTGCTGGCCATGACGAGAA+TGG | 0.514622 | 1.1:+79316004 | MS.gene76217:CDS |
| GGAATATATACTTACAGGCT+AGG | 0.527284 | 1.1:-79316028 | None:intergenic |
| ATCACAGCTTCCACCTCAGA+CGG | 0.535599 | 1.1:-79318500 | None:intergenic |
| TCACAGCTTCCACCTCAGAC+GGG | 0.536535 | 1.1:-79318499 | None:intergenic |
| TCTTTATACCCCGTCTGAGG+TGG | 0.544181 | 1.1:+79318490 | MS.gene76217:CDS |
| CTTGAAAACGAAAGAGGGTG+TGG | 0.545014 | 1.1:+79314274 | MS.gene76217:CDS |
| ATGATACGCTGGAGCAACCC+TGG | 0.548475 | 1.1:-79318468 | None:intergenic |
| ACCTGAAACAAACGTCCCTC+GGG | 0.549237 | 1.1:-79314103 | None:intergenic |
| CTTCCCCAAAGCGCAAGGCT+AGG | 0.558153 | 1.1:-79315512 | None:intergenic |
| GAAGCAAGTTATGGAAGAGA+AGG | 0.568369 | 1.1:+79318328 | MS.gene76217:CDS |
| GGCTAGGTCCATTCTCGTCA+TGG | 0.580425 | 1.1:-79316012 | None:intergenic |
| ATAAGGAGAGACACTCCAAA+TGG | 0.589626 | 1.1:-79315983 | None:intergenic |
| TGACCTAGCCTTGCGCTTTG+GGG | 0.590485 | 1.1:+79315509 | MS.gene76217:CDS |
| ATCACCTTCCCCAAAGCGCA+AGG | 0.591699 | 1.1:-79315517 | None:intergenic |
| GCTATTGGTTCAGGATCAGA+AGG | 0.597231 | 1.1:+79317034 | MS.gene76217:CDS |
| GGAAGGTGATGAAGAATCCA+TGG | 0.599188 | 1.1:+79315530 | MS.gene76217:CDS |
| GTTGTAGACTCTACAGTCAT+CGG | 0.602200 | 1.1:-79315474 | None:intergenic |
| CACATTGGCTGTGCAATGAG+TGG | 0.606594 | 1.1:+79315217 | MS.gene76217:CDS |
| GATTGGCTTGAAAACGAAAG+AGG | 0.610207 | 1.1:+79314268 | MS.gene76217:CDS |
| CATTGCCAAAATGTGCCAGA+AGG | 0.618837 | 1.1:-79317001 | None:intergenic |
| AAACCAACATGTTTCTCACA+AGG | 0.620638 | 1.1:+79313894 | None:intergenic |
| ATGGAAATTGATGATCACAT+TGG | 0.621320 | 1.1:+79315202 | MS.gene76217:CDS |
| GAATAGGTACATACCAGTAG+AGG | 0.625077 | 1.1:-79314326 | None:intergenic |
| ATTGGCTTGAAAACGAAAGA+GGG | 0.626167 | 1.1:+79314269 | MS.gene76217:CDS |
| TCATCTTTATACCCCGTCTG+AGG | 0.634475 | 1.1:+79318487 | MS.gene76217:CDS |
| CAACAACGTTGACATTGCCA+GGG | 0.635659 | 1.1:+79318451 | MS.gene76217:CDS |
| CACAGCTTCCACCTCAGACG+GGG | 0.645540 | 1.1:-79318498 | None:intergenic |
| GGGGTATAAAGATGATACGC+TGG | 0.658506 | 1.1:-79318479 | None:intergenic |
| GCATGCACGAGTTGAAACTC+AGG | 0.662565 | 1.1:+79315270 | MS.gene76217:CDS |
| CTTTCAGGAGCCCAGCAGTG+TGG | 0.675944 | 1.1:+79315171 | MS.gene76217:intron |
| ATTAGAACTGAGTATGACCG+TGG | 0.689159 | 1.1:+79314064 | MS.gene76217:intron |
| TCTGCAAGAACAATTCAACA+AGG | 0.713271 | 1.1:+79317069 | MS.gene76217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAACAATAATAG+AGG | - | chr1.1:79314163-79314182 | None:intergenic | 10.0% |
| !! | ATAATAATAACAATAATAGA+GGG | - | chr1.1:79314162-79314181 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAATTACATAAA+AGG | - | chr1.1:79314352-79314371 | None:intergenic | 10.0% |
| !!! | TTTAGAATAAATTGAATTAT+GGG | + | chr1.1:79314672-79314691 | MS.gene76217:intron | 10.0% |
| !!! | TTTATAATTTAAAATGTTGT+TGG | + | chr1.1:79318150-79318169 | MS.gene76217:intron | 10.0% |
| !! | ATATCATTAAAATTATTAGC+TGG | + | chr1.1:79317145-79317164 | MS.gene76217:intron | 15.0% |
| !! | ATTAATTACCTTAATTCTTT+GGG | + | chr1.1:79318015-79318034 | MS.gene76217:intron | 15.0% |
| !! | TATCATTAAAATTATTAGCT+GGG | + | chr1.1:79317146-79317165 | MS.gene76217:intron | 15.0% |
| !! | TATTAATTACCTTAATTCTT+TGG | + | chr1.1:79318014-79318033 | MS.gene76217:intron | 15.0% |
| !! | TTAGAATAAATTGAATTATG+GGG | + | chr1.1:79314673-79314692 | MS.gene76217:intron | 15.0% |
| !!! | ATATTGATATTGATCTATTT+TGG | + | chr1.1:79315413-79315432 | MS.gene76217:intron | 15.0% |
| !!! | CTTTCTTATTATTTCTTTAA+TGG | + | chr1.1:79316489-79316508 | MS.gene76217:intron | 15.0% |
| !!! | GTTTAGAATAAATTGAATTA+TGG | + | chr1.1:79314671-79314690 | MS.gene76217:intron | 15.0% |
| !!! | TTTTTTATTAGTGTACAAAT+GGG | + | chr1.1:79315837-79315856 | MS.gene76217:intron | 15.0% |
| !!! | TTTTTTTATTAGTGTACAAA+TGG | + | chr1.1:79315836-79315855 | MS.gene76217:intron | 15.0% |
| !! | AAAATTACATAAAAGGGAAT+AGG | - | chr1.1:79314345-79314364 | None:intergenic | 20.0% |
| !! | AAATTGTAATGTATGTTTCA+TGG | - | chr1.1:79315136-79315155 | None:intergenic | 20.0% |
| !! | AACAAAAATCCTAATACATT+TGG | - | chr1.1:79314011-79314030 | None:intergenic | 20.0% |
| !! | AACAAAAATGAGAAAATTAC+AGG | - | chr1.1:79316341-79316360 | None:intergenic | 20.0% |
| !! | AATAAAAAAGAAAGAAGTGA+TGG | - | chr1.1:79316400-79316419 | None:intergenic | 20.0% |
| !! | AATAAATATGACTATAAGCA+CGG | - | chr1.1:79315094-79315113 | None:intergenic | 20.0% |
| !! | ACAAAAATCCTAATACATTT+GGG | - | chr1.1:79314010-79314029 | None:intergenic | 20.0% |
| !! | ATAAAAAAACACCTTACAAA+AGG | - | chr1.1:79315825-79315844 | None:intergenic | 20.0% |
| !! | ATAAAAAAGAAAGAAGTGAT+GGG | - | chr1.1:79316399-79316418 | None:intergenic | 20.0% |
| !! | ATATTAAACATTCCTATGAA+AGG | + | chr1.1:79315786-79315805 | MS.gene76217:intron | 20.0% |
| !! | ATGTTAAAACATTTCTAAAC+CGG | + | chr1.1:79316292-79316311 | MS.gene76217:intron | 20.0% |
| !! | ATTAGTTAAATTACAGAGAA+AGG | + | chr1.1:79316193-79316212 | MS.gene76217:intron | 20.0% |
| !! | CTAAACTTAAAATCTATTGT+TGG | + | chr1.1:79315763-79315782 | MS.gene76217:intron | 20.0% |
| !! | TGTTAAATAGATACACAAAA+TGG | + | chr1.1:79317844-79317863 | MS.gene76217:intron | 20.0% |
| !! | TTAATTACCTTAATTCTTTG+GGG | + | chr1.1:79318016-79318035 | MS.gene76217:intron | 20.0% |
| !!! | AGAATATCAATATGATTTGT+AGG | - | chr1.1:79318071-79318090 | None:intergenic | 20.0% |
| !!! | CAACAATAGATTTTAAGTTT+AGG | - | chr1.1:79315765-79315784 | None:intergenic | 20.0% |
| !!! | TACCATTTATTTTTTCTCTT+TGG | + | chr1.1:79315951-79315970 | MS.gene76217:intron | 20.0% |
| !!! | TGATTGATATTGATCTATTT+TGG | + | chr1.1:79315342-79315361 | MS.gene76217:intron | 20.0% |
| ! | AAGAGTTGAATACGATTTAT+AGG | - | chr1.1:79318047-79318066 | None:intergenic | 25.0% |
| ! | AATAGAATGTTGTATGTAGT+TGG | + | chr1.1:79315310-79315329 | MS.gene76217:intron | 25.0% |
| ! | AGACAAAAATATACAAGAGA+TGG | - | chr1.1:79318105-79318124 | None:intergenic | 25.0% |
| ! | AGCTAAAAAGTTATATACCA+TGG | - | chr1.1:79315550-79315569 | None:intergenic | 25.0% |
| ! | AGTTAGAATATATTCTCAGT+AGG | - | chr1.1:79318398-79318417 | None:intergenic | 25.0% |
| ! | ATATGCAATTGAAGCTATTA+AGG | + | chr1.1:79314129-79314148 | MS.gene76217:CDS | 25.0% |
| ! | ATTAAAATTATTAGCTGGGA+TGG | + | chr1.1:79317150-79317169 | MS.gene76217:intron | 25.0% |
| ! | CAAAAATCCTAATACATTTG+GGG | - | chr1.1:79314009-79314028 | None:intergenic | 25.0% |
| ! | CATGCATATATTTCTTACTT+GGG | - | chr1.1:79314620-79314639 | None:intergenic | 25.0% |
| ! | GAAATAATAAGAAAGAGTGA+AGG | - | chr1.1:79316484-79316503 | None:intergenic | 25.0% |
| ! | GTTAGAATATATTCTCAGTA+GGG | - | chr1.1:79318397-79318416 | None:intergenic | 25.0% |
| ! | TAGATGGAATATATACTTAC+AGG | - | chr1.1:79316036-79316055 | None:intergenic | 25.0% |
| ! | TATAGAATGTTGTATGTAGT+TGG | + | chr1.1:79315370-79315389 | MS.gene76217:intron | 25.0% |
| ! | TGCATATTCTGAATGTTTAA+TGG | + | chr1.1:79315692-79315711 | MS.gene76217:intron | 25.0% |
| ! | TGCCAAAGAGAAAAAATAAA+TGG | - | chr1.1:79315956-79315975 | None:intergenic | 25.0% |
| ! | TTAGAATATATTCTCAGTAG+GGG | - | chr1.1:79318396-79318415 | None:intergenic | 25.0% |
| ! | TTGCTTAAAGATTATCTTTC+AGG | + | chr1.1:79318199-79318218 | MS.gene76217:intron | 25.0% |
| ! | TTGTAAAAGATACTTACTAG+TGG | + | chr1.1:79315892-79315911 | MS.gene76217:intron | 25.0% |
| !! | AAAAGAAAGTGTAACATACA+AGG | - | chr1.1:79316167-79316186 | None:intergenic | 25.0% |
| !! | ATTGATTTATTATGTTGTGC+AGG | + | chr1.1:79318262-79318281 | MS.gene76217:intron | 25.0% |
| !! | ATTTATTTCCCTTTTCATTC+TGG | + | chr1.1:79316926-79316945 | MS.gene76217:intron | 25.0% |
| !! | TAATTTTCCCCAAATGTATT+AGG | + | chr1.1:79313999-79314018 | MS.gene76217:intron | 25.0% |
| !! | TATGTTACACTTTCTTTTCT+GGG | + | chr1.1:79316169-79316188 | MS.gene76217:intron | 25.0% |
| !! | TCAGAATTACATCTAAAACT+GGG | - | chr1.1:79315033-79315052 | None:intergenic | 25.0% |
| !! | TGTTATTTGCAACAGTATTA+AGG | - | chr1.1:79317989-79318008 | None:intergenic | 25.0% |
| !! | TTCAGAATTACATCTAAAAC+TGG | - | chr1.1:79315034-79315053 | None:intergenic | 25.0% |
| !!! | ATCTCTTGTATATTTTTGTC+TGG | + | chr1.1:79318104-79318123 | MS.gene76217:intron | 25.0% |
| !!! | GGTTTTTAACTATCTGTATT+CGG | + | chr1.1:79314188-79314207 | MS.gene76217:intron | 25.0% |
| !!! | GTATTAGGATTTTTGTTTCT+AGG | + | chr1.1:79314014-79314033 | MS.gene76217:intron | 25.0% |
| !!! | GTTTTTAACTATCTGTATTC+GGG | + | chr1.1:79314189-79314208 | MS.gene76217:intron | 25.0% |
| !!! | TATTTTGATTTTGTAGGATC+AGG | + | chr1.1:79316849-79316868 | MS.gene76217:intron | 25.0% |
| !!! | TTCACAAATACTTTTGAGAA+AGG | - | chr1.1:79316430-79316449 | None:intergenic | 25.0% |
| !!! | TTTATTTTTCACAGAATCAC+AGG | + | chr1.1:79315436-79315455 | MS.gene76217:intron | 25.0% |
| !!! | TTTCTCATTTTTGTTTCACT+TGG | + | chr1.1:79316346-79316365 | MS.gene76217:intron | 25.0% |
| AAAAGAATTTGGGCTCTATT+TGG | + | chr1.1:79317682-79317701 | MS.gene76217:intron | 30.0% | |
| AAATTCTTGCCAAATATGTC+CGG | - | chr1.1:79316314-79316333 | None:intergenic | 30.0% | |
| AACACAGAAAATGAGTCAAA+AGG | - | chr1.1:79316095-79316114 | None:intergenic | 30.0% | |
| AAGATTATCTTTCAGGATAG+AGG | + | chr1.1:79318206-79318225 | MS.gene76217:intron | 30.0% | |
| AATTGAATTATGGGGATATC+TGG | + | chr1.1:79314681-79314700 | MS.gene76217:intron | 30.0% | |
| AGAAAATAATTGCACAGCAT+GGG | + | chr1.1:79316826-79316845 | MS.gene76217:intron | 30.0% | |
| ATGAAAATCTGCCCTAAAAA+GGG | - | chr1.1:79314573-79314592 | None:intergenic | 30.0% | |
| ATTGAGTCTCAAATCCTAAT+TGG | - | chr1.1:79316745-79316764 | None:intergenic | 30.0% | |
| ATTTCTAAACCGGACATATT+TGG | + | chr1.1:79316302-79316321 | MS.gene76217:intron | 30.0% | |
| GACATGAAAACAAGTGAATT+TGG | + | chr1.1:79318238-79318257 | MS.gene76217:intron | 30.0% | |
| GCATGCATATATTTCTTACT+TGG | - | chr1.1:79314621-79314640 | None:intergenic | 30.0% | |
| GTCATCTATAGTAGAAAGAT+GGG | - | chr1.1:79317620-79317639 | None:intergenic | 30.0% | |
| TAGAATATATTCTCAGTAGG+GGG | - | chr1.1:79318395-79318414 | None:intergenic | 30.0% | |
| TATAAGCGAGACTATTAAGA+AGG | - | chr1.1:79317452-79317471 | None:intergenic | 30.0% | |
| TATATATTCCATCTAAGCCA+TGG | + | chr1.1:79316041-79316060 | MS.gene76217:intron | 30.0% | |
| TCATCTATAGTAGAAAGATG+GGG | - | chr1.1:79317619-79317638 | None:intergenic | 30.0% | |
| TCTCCATTTCTCAAAACAAA+TGG | - | chr1.1:79317813-79317832 | None:intergenic | 30.0% | |
| TGTGTTAAAATTCCACTTTC+AGG | + | chr1.1:79315156-79315175 | MS.gene76217:intron | 30.0% | |
| TTCTACCATCTTTCTACTAT+AGG | + | chr1.1:79317588-79317607 | MS.gene76217:intron | 30.0% | |
| TTCTGCGTCTAAAAGAATTT+GGG | + | chr1.1:79317672-79317691 | MS.gene76217:intron | 30.0% | |
| TTCTTCTGTACTTTCACATT+AGG | + | chr1.1:79318421-79318440 | MS.gene76217:intron | 30.0% | |
| TTCTTGTTCAAACTAGTTCA+TGG | + | chr1.1:79316657-79316676 | MS.gene76217:intron | 30.0% | |
| TTGAGTCTCAAATCCTAATT+GGG | - | chr1.1:79316744-79316763 | None:intergenic | 30.0% | |
| TTTCTGCGTCTAAAAGAATT+TGG | + | chr1.1:79317671-79317690 | MS.gene76217:intron | 30.0% | |
| ! | AAATTCTTTTAGACGCAGAA+AGG | - | chr1.1:79317672-79317691 | None:intergenic | 30.0% |
| ! | ACTGCTGTTTGATAATTTGT+TGG | - | chr1.1:79314811-79314830 | None:intergenic | 30.0% |
| ! | ATGGAAATTGATGATCACAT+TGG | + | chr1.1:79315202-79315221 | MS.gene76217:CDS | 30.0% |
| ! | ATGTTACACTTTCTTTTCTG+GGG | + | chr1.1:79316170-79316189 | MS.gene76217:intron | 30.0% |
| ! | GAGAATGATGCTATAGTTTT+AGG | + | chr1.1:79316518-79316537 | MS.gene76217:intron | 30.0% |
| ! | GTAAATACATCTTTTCTGTG+CGG | + | chr1.1:79316574-79316593 | MS.gene76217:intron | 30.0% |
| ! | GTATGTTACACTTTCTTTTC+TGG | + | chr1.1:79316168-79316187 | MS.gene76217:intron | 30.0% |
| !! | ATCAATTCTGAAGCAAGTTA+TGG | + | chr1.1:79318319-79318338 | MS.gene76217:CDS | 30.0% |
| !! | GGTTTTTCAATAGAACATCA+TGG | - | chr1.1:79317398-79317417 | None:intergenic | 30.0% |
| !! | TGCATTAATTTGTCTGTGAT+GGG | - | chr1.1:79316791-79316810 | None:intergenic | 30.0% |
| !!! | CATGGGTATTTTGATTTTGT+AGG | + | chr1.1:79316843-79316862 | MS.gene76217:intron | 30.0% |
| !!! | TTTTTTGTTGGATTTCAGCT+TGG | + | chr1.1:79314236-79314255 | MS.gene76217:intron | 30.0% |
| AAAACTGGGTATAACACGTT+TGG | - | chr1.1:79315019-79315038 | None:intergenic | 35.0% | |
| AAATTAGACTCAGGTGGTTT+GGG | - | chr1.1:79317570-79317589 | None:intergenic | 35.0% | |
| AACTGGAAGTAACATGCATT+TGG | - | chr1.1:79318365-79318384 | None:intergenic | 35.0% | |
| AAGTTTGTGGACATTTCACA+TGG | - | chr1.1:79314970-79314989 | None:intergenic | 35.0% | |
| AATTACAGAGAAAGGACATG+TGG | + | chr1.1:79316201-79316220 | MS.gene76217:intron | 35.0% | |
| AGAATATATTCTCAGTAGGG+GGG | - | chr1.1:79318394-79318413 | None:intergenic | 35.0% | |
| AGATATTACACTGATCCTTC+TGG | + | chr1.1:79316986-79317005 | MS.gene76217:intron | 35.0% | |
| AGATGGTAGAAATTAGACTC+AGG | - | chr1.1:79317579-79317598 | None:intergenic | 35.0% | |
| AGGAAACATTTAGTGGTAGT+TGG | + | chr1.1:79316709-79316728 | MS.gene76217:intron | 35.0% | |
| CAGAAAATAATTGCACAGCA+TGG | + | chr1.1:79316825-79316844 | MS.gene76217:intron | 35.0% | |
| CATTATTAACCTCACCATAG+CGG | - | chr1.1:79314737-79314756 | None:intergenic | 35.0% | |
| CCACTAAATGTTTCCTGTTA+TGG | - | chr1.1:79316705-79316724 | None:intergenic | 35.0% | |
| CCATAACAGGAAACATTTAG+TGG | + | chr1.1:79316702-79316721 | MS.gene76217:intron | 35.0% | |
| CGTCATCTATAGTAGAAAGA+TGG | - | chr1.1:79317621-79317640 | None:intergenic | 35.0% | |
| CTCCTTACTACAAAATCCAT+AGG | + | chr1.1:79317529-79317548 | MS.gene76217:intron | 35.0% | |
| GATGAAAATCTGCCCTAAAA+AGG | - | chr1.1:79314574-79314593 | None:intergenic | 35.0% | |
| GGAATATATACTTACAGGCT+AGG | - | chr1.1:79316031-79316050 | None:intergenic | 35.0% | |
| GGATATTCATATGCAAAGAG+TGG | + | chr1.1:79316258-79316277 | MS.gene76217:intron | 35.0% | |
| GTAACAACTCTCCTCATTAT+GGG | - | chr1.1:79317908-79317927 | None:intergenic | 35.0% | |
| GTGTAACATACAAGGAACAA+CGG | - | chr1.1:79316159-79316178 | None:intergenic | 35.0% | |
| GTTTCCTGTTATGGTTCAAA+AGG | - | chr1.1:79316696-79316715 | None:intergenic | 35.0% | |
| TAACAACTCTCCTCATTATG+GGG | - | chr1.1:79317907-79317926 | None:intergenic | 35.0% | |
| TAATAAGCTGGAGAAAGACA+TGG | - | chr1.1:79317419-79317438 | None:intergenic | 35.0% | |
| TCTCCAGCTTATTAATCTCT+AGG | + | chr1.1:79317425-79317444 | MS.gene76217:intron | 35.0% | |
| TCTGCAAGAACAATTCAACA+AGG | + | chr1.1:79317069-79317088 | MS.gene76217:CDS | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr1.1:79314473-79314492 | MS.gene76217:intron | 35.0% | |
| TGAGTCTCAAATCCTAATTG+GGG | - | chr1.1:79316743-79316762 | None:intergenic | 35.0% | |
| TGCTTACAGTGCTTTCTTTA+AGG | + | chr1.1:79315598-79315617 | MS.gene76217:intron | 35.0% | |
| TGTATTTACGCACACATCAA+TGG | - | chr1.1:79316563-79316582 | None:intergenic | 35.0% | |
| TTAACTATCTGTATTCGGGT+TGG | + | chr1.1:79314193-79314212 | MS.gene76217:intron | 35.0% | |
| TTCAGAATATGCAACACACA+AGG | - | chr1.1:79315685-79315704 | None:intergenic | 35.0% | |
| ! | AAGAACAGTCGCAATTTTTC+TGG | + | chr1.1:79316237-79316256 | MS.gene76217:intron | 35.0% |
| ! | ATAATTTTCTCCACACTGCT+GGG | - | chr1.1:79315184-79315203 | None:intergenic | 35.0% |
| ! | GACCTATGGATTTTGTAGTA+AGG | - | chr1.1:79317534-79317553 | None:intergenic | 35.0% |
| ! | GTCTCGCTTATAGTTTTTCT+AGG | + | chr1.1:79317460-79317479 | MS.gene76217:intron | 35.0% |
| ! | TAATTTGTCTGTGATGGGAA+TGG | - | chr1.1:79316786-79316805 | None:intergenic | 35.0% |
| !! | ATACTTACTAGTGGTGTTGT+TGG | + | chr1.1:79315901-79315920 | MS.gene76217:intron | 35.0% |
| !! | ATTGGCTTGAAAACGAAAGA+GGG | + | chr1.1:79314269-79314288 | MS.gene76217:CDS | 35.0% |
| !! | ATTTTGGCAATGCAATGCAA+AGG | + | chr1.1:79317012-79317031 | MS.gene76217:CDS | 35.0% |
| !! | CTGCATTAATTTGTCTGTGA+TGG | - | chr1.1:79316792-79316811 | None:intergenic | 35.0% |
| !! | TTTTGTTTCACTTGGTTCCT+TGG | + | chr1.1:79316354-79316373 | MS.gene76217:intron | 35.0% |
| !!! | GCTCCATTTGTTTTGAGAAA+TGG | + | chr1.1:79317807-79317826 | MS.gene76217:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1.1:79314474-79314493 | None:intergenic | 35.0% |
| AACAACCCACTGTAAGAACA+TGG | - | chr1.1:79317098-79317117 | None:intergenic | 40.0% | |
| AACACCTTACAAAAGGACAG+TGG | - | chr1.1:79315818-79315837 | None:intergenic | 40.0% | |
| ACACTGCATTGTTCAACTCT+CGG | + | chr1.1:79316608-79316627 | MS.gene76217:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1.1:79314467-79314486 | MS.gene76217:intron | 40.0% | |
| ACATGACTCAGAAGTAACCA+TGG | - | chr1.1:79316061-79316080 | None:intergenic | 40.0% | |
| ACCAATGGTCCAGAATGAAA+AGG | - | chr1.1:79316938-79316957 | None:intergenic | 40.0% | |
| ACGCAGAAAGGATCTTAAGA+GGG | - | chr1.1:79317660-79317679 | None:intergenic | 40.0% | |
| ACTAGTTCATGGTAGCAACT+TGG | + | chr1.1:79316668-79316687 | MS.gene76217:intron | 40.0% | |
| AGAAGTAACCATGGCTTAGA+TGG | - | chr1.1:79316052-79316071 | None:intergenic | 40.0% | |
| AGCATAGATCCAAGAATTCC+AGG | - | chr1.1:79317930-79317949 | None:intergenic | 40.0% | |
| AGGTATCCATGTTCTTACAG+TGG | + | chr1.1:79317089-79317108 | MS.gene76217:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | - | chr1.1:79317518-79317537 | None:intergenic | 40.0% | |
| AGTCAAATCACTAGAGGTAG+GGG | - | chr1.1:79317490-79317509 | None:intergenic | 40.0% | |
| ATAAGGAGAGACACTCCAAA+TGG | - | chr1.1:79315986-79316005 | None:intergenic | 40.0% | |
| ATTAGAACTGAGTATGACCG+TGG | + | chr1.1:79314064-79314083 | MS.gene76217:intron | 40.0% | |
| CAATGCAATGCAAAGGCTAT+TGG | + | chr1.1:79317019-79317038 | MS.gene76217:CDS | 40.0% | |
| CACACATCAATGGTAAGAGT+AGG | - | chr1.1:79316553-79316572 | None:intergenic | 40.0% | |
| CAGAATCACAGGTTCTCTTA+TGG | + | chr1.1:79315447-79315466 | MS.gene76217:intron | 40.0% | |
| CAGCACCTATAGTAGAAAGA+TGG | - | chr1.1:79317596-79317615 | None:intergenic | 40.0% | |
| CAGCAGTGTGGAGAAAATTA+TGG | + | chr1.1:79315183-79315202 | MS.gene76217:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr1.1:79314468-79314487 | MS.gene76217:intron | 40.0% | |
| CAGTGGCTTAATCCTTTCAT+AGG | - | chr1.1:79315801-79315820 | None:intergenic | 40.0% | |
| CCAATGGTCCAGAATGAAAA+GGG | - | chr1.1:79316937-79316956 | None:intergenic | 40.0% | |
| CGCTATGGTGAGGTTAATAA+TGG | + | chr1.1:79314735-79314754 | MS.gene76217:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1.1:79314499-79314518 | MS.gene76217:intron | 40.0% | |
| CTTATCTCACTAAGTGGAGT+CGG | + | chr1.1:79317353-79317372 | MS.gene76217:intron | 40.0% | |
| GAAATTAGACTCAGGTGGTT+TGG | - | chr1.1:79317571-79317590 | None:intergenic | 40.0% | |
| GAAGCAAGTTATGGAAGAGA+AGG | + | chr1.1:79318328-79318347 | MS.gene76217:CDS | 40.0% | |
| GAATAGGTACATACCAGTAG+AGG | - | chr1.1:79314329-79314348 | None:intergenic | 40.0% | |
| GAGTCAAATCACTAGAGGTA+GGG | - | chr1.1:79317491-79317510 | None:intergenic | 40.0% | |
| GAGTCTCAAATCCTAATTGG+GGG | - | chr1.1:79316742-79316761 | None:intergenic | 40.0% | |
| GAGTTGTTACCTGGAATTCT+TGG | + | chr1.1:79317918-79317937 | MS.gene76217:intron | 40.0% | |
| GGACCTAGAGATTAATAAGC+TGG | - | chr1.1:79317431-79317450 | None:intergenic | 40.0% | |
| GGTAACAACTCTCCTCATTA+TGG | - | chr1.1:79317909-79317928 | None:intergenic | 40.0% | |
| GGTATCCATGTTCTTACAGT+GGG | + | chr1.1:79317090-79317109 | MS.gene76217:intron | 40.0% | |
| GTGAAATGTCCACAAACTTG+CGG | + | chr1.1:79314971-79314990 | MS.gene76217:intron | 40.0% | |
| GTGCATGCAGATTCAAAACA+TGG | + | chr1.1:79317262-79317281 | MS.gene76217:intron | 40.0% | |
| GTTGTAGACTCTACAGTCAT+CGG | - | chr1.1:79315477-79315496 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr1.1:79314423-79314442 | MS.gene76217:intron | 40.0% | |
| TAACAGTCAGTTTAGCAGTG+CGG | + | chr1.1:79314770-79314789 | MS.gene76217:intron | 40.0% | |
| TAATGAGGAGAGTTGTTACC+TGG | + | chr1.1:79317909-79317928 | MS.gene76217:intron | 40.0% | |
| TATTAGCTGGGATGGTAAAG+TGG | + | chr1.1:79317158-79317177 | MS.gene76217:intron | 40.0% | |
| TCAGCAGTCACTAGATGATA+CGG | + | chr1.1:79316882-79316901 | MS.gene76217:intron | 40.0% | |
| TGCAAAGAGTGGTTAATGAG+TGG | + | chr1.1:79316269-79316288 | MS.gene76217:intron | 40.0% | |
| TGGTAGAAATTAGACTCAGG+TGG | - | chr1.1:79317576-79317595 | None:intergenic | 40.0% | |
| TTTAACCTCAGCAAGACCAA+TGG | - | chr1.1:79316953-79316972 | None:intergenic | 40.0% | |
| ! | AAGATGGCATGTTACTTCCA+AGG | - | chr1.1:79316374-79316393 | None:intergenic | 40.0% |
| ! | ATCTCCATTTTCTCCACAGT+TGG | - | chr1.1:79317225-79317244 | None:intergenic | 40.0% |
| ! | CATAATTTTCTCCACACTGC+TGG | - | chr1.1:79315185-79315204 | None:intergenic | 40.0% |
| ! | CATGCAAGTTCACAGGTTTT+GGG | - | chr1.1:79315624-79315643 | None:intergenic | 40.0% |
| ! | GCATGCACTAAATTTGAGAC+TGG | - | chr1.1:79317250-79317269 | None:intergenic | 40.0% |
| ! | TAAGCCACTGTCCTTTTGTA+AGG | + | chr1.1:79315811-79315830 | MS.gene76217:intron | 40.0% |
| ! | TCATGCAAGTTCACAGGTTT+TGG | - | chr1.1:79315625-79315644 | None:intergenic | 40.0% |
| ! | TTAGGGCAGATTTTCATCGA+GGG | + | chr1.1:79314377-79314396 | MS.gene76217:intron | 40.0% |
| !! | AATGCAAAGGCTATTGGTTC+AGG | + | chr1.1:79317025-79317044 | MS.gene76217:CDS | 40.0% |
| !! | GAGAAAAAGTGTTGACTCCA+CGG | - | chr1.1:79314084-79314103 | None:intergenic | 40.0% |
| !! | GATTGGCTTGAAAACGAAAG+AGG | + | chr1.1:79314268-79314287 | MS.gene76217:CDS | 40.0% |
| !! | TTTAGGGCAGATTTTCATCG+AGG | + | chr1.1:79314376-79314395 | MS.gene76217:intron | 40.0% |
| AAATGTCCACAAACTTGCGG+TGG | + | chr1.1:79314974-79314993 | MS.gene76217:intron | 45.0% | |
| AACCCCAAAAGTGGGATAGA+GGG | - | chr1.1:79314837-79314856 | None:intergenic | 45.0% | |
| AACCTGAAACAAACGTCCCT+CGG | - | chr1.1:79314107-79314126 | None:intergenic | 45.0% | |
| AAGCGATCATGCAAGTTCAC+AGG | - | chr1.1:79315631-79315650 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | - | chr1.1:79317515-79317534 | None:intergenic | 45.0% | |
| AATGTCCACAAACTTGCGGT+GGG | + | chr1.1:79314975-79314994 | MS.gene76217:intron | 45.0% | |
| AGAGAGAGAGAGAGAGGAAA+GGG | - | chr1.1:79313925-79313944 | None:intergenic | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | - | chr1.1:79317514-79317533 | None:intergenic | 45.0% | |
| CAACAACGTTGACATTGCCA+GGG | + | chr1.1:79318451-79318470 | MS.gene76217:CDS | 45.0% | |
| CATTGCCAAAATGTGCCAGA+AGG | - | chr1.1:79317004-79317023 | None:intergenic | 45.0% | |
| CCACTTAGTGAGATAAGGCT+TGG | - | chr1.1:79317350-79317369 | None:intergenic | 45.0% | |
| CGACTCCACTTAGTGAGATA+AGG | - | chr1.1:79317355-79317374 | None:intergenic | 45.0% | |
| CGCAGAAAGGATCTTAAGAG+GGG | - | chr1.1:79317659-79317678 | None:intergenic | 45.0% | |
| CTCTCCAACTGTGGAGAAAA+TGG | + | chr1.1:79317218-79317237 | MS.gene76217:intron | 45.0% | |
| CTGGCAATGTCAACGTTGTT+GGG | - | chr1.1:79318452-79318471 | None:intergenic | 45.0% | |
| CTTGAAAACGAAAGAGGGTG+TGG | + | chr1.1:79314274-79314293 | MS.gene76217:CDS | 45.0% | |
| GACGCAGAAAGGATCTTAAG+AGG | - | chr1.1:79317661-79317680 | None:intergenic | 45.0% | |
| GACTACGCACATGTTTGTCT+TGG | + | chr1.1:79314884-79314903 | MS.gene76217:intron | 45.0% | |
| GCATGTAGAGAGAAGACCTA+TGG | - | chr1.1:79317548-79317567 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1.1:79314498-79314517 | MS.gene76217:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1.1:79314495-79314514 | MS.gene76217:intron | 45.0% | |
| GGAAGGTGATGAAGAATCCA+TGG | + | chr1.1:79315530-79315549 | MS.gene76217:CDS | 45.0% | |
| GGAGTCAAATCACTAGAGGT+AGG | - | chr1.1:79317492-79317511 | None:intergenic | 45.0% | |
| GGCGAAACCCCAAAGAATTA+AGG | - | chr1.1:79318026-79318045 | None:intergenic | 45.0% | |
| GGGGTATAAAGATGATACGC+TGG | - | chr1.1:79318482-79318501 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr1.1:79314429-79314448 | MS.gene76217:intron | 45.0% | |
| TACGCACATGTTTGTCTTGG+TGG | + | chr1.1:79314887-79314906 | MS.gene76217:intron | 45.0% | |
| TCATCTTTATACCCCGTCTG+AGG | + | chr1.1:79318487-79318506 | MS.gene76217:CDS | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr1.1:79314430-79314449 | MS.gene76217:intron | 45.0% | |
| TTCTCCATTCTCTCCTCGAA+TGG | + | chr1.1:79317869-79317888 | MS.gene76217:intron | 45.0% | |
| TTGGCATCTTACCCCCAATT+AGG | + | chr1.1:79316728-79316747 | MS.gene76217:intron | 45.0% | |
| ! | ACACGTTTGGATGTGCGTTT+TGG | - | chr1.1:79315006-79315025 | None:intergenic | 45.0% |
| ! | CATTTTCTCCACAGTTGGAG+AGG | - | chr1.1:79317220-79317239 | None:intergenic | 45.0% |
| ! | CCAAGCCTTATCTCACTAAG+TGG | + | chr1.1:79317347-79317366 | MS.gene76217:intron | 45.0% |
| ! | CCCTTTTCATTCTGGACCAT+TGG | + | chr1.1:79316934-79316953 | MS.gene76217:intron | 45.0% |
| ! | CTGATCCTTCTGGCACATTT+TGG | + | chr1.1:79316996-79317015 | MS.gene76217:CDS | 45.0% |
| ! | GGCACCTTTTGAACCATAAC+AGG | + | chr1.1:79316689-79316708 | MS.gene76217:intron | 45.0% |
| ! | TAGGGCAGATTTTCATCGAG+GGG | + | chr1.1:79314378-79314397 | MS.gene76217:intron | 45.0% |
| ! | TCATCCCTCTATCCCACTTT+TGG | + | chr1.1:79314830-79314849 | MS.gene76217:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1.1:79314463-79314482 | None:intergenic | 45.0% |
| ! | TTTTCATCGAGGGGTAACCT+TGG | + | chr1.1:79314387-79314406 | MS.gene76217:intron | 45.0% |
| !! | AAAGAAGTGATGGGCGAAGA+TGG | - | chr1.1:79316390-79316409 | None:intergenic | 45.0% |
| !! | ATCCCTCTATCCCACTTTTG+GGG | + | chr1.1:79314832-79314851 | MS.gene76217:intron | 45.0% |
| !! | CATCCCTCTATCCCACTTTT+GGG | + | chr1.1:79314831-79314850 | MS.gene76217:intron | 45.0% |
| !! | GCTATTGGTTCAGGATCAGA+AGG | + | chr1.1:79317034-79317053 | MS.gene76217:CDS | 45.0% |
| !!! | AGTCAACACTTTTTCTCCCG+AGG | + | chr1.1:79314087-79314106 | MS.gene76217:CDS | 45.0% |
| !!! | GTCAACACTTTTTCTCCCGA+GGG | + | chr1.1:79314088-79314107 | MS.gene76217:CDS | 45.0% |
| !! | AAAAAAAAAATTACATAAAA+GGG | - | chr1.1:79314351-79314370 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTGTTAATTT+AGG | + | chr1.1:79314359-79314378 | MS.gene76217:intron | 5.0% |
| !!! | ATTTTTTTTTTGTTAATTTA+GGG | + | chr1.1:79314360-79314379 | MS.gene76217:intron | 5.0% |
| !!! | TATTGTTATTATTATTATTA+GGG | + | chr1.1:79314167-79314186 | MS.gene76217:intron | 5.0% |
| !!! | TTAATTTTTTTTTTTTTTGT+TGG | + | chr1.1:79314224-79314243 | MS.gene76217:intron | 5.0% |
| !!! | TTATTGTTATTATTATTATT+AGG | + | chr1.1:79314166-79314185 | MS.gene76217:intron | 5.0% |
| ACCTGAAACAAACGTCCCTC+GGG | - | chr1.1:79314106-79314125 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr1.1:79313929-79313948 | None:intergenic | 50.0% | |
| ATCACAGCTTCCACCTCAGA+CGG | - | chr1.1:79318503-79318522 | None:intergenic | 50.0% | |
| ATGTCCACAAACTTGCGGTG+GGG | + | chr1.1:79314976-79314995 | MS.gene76217:intron | 50.0% | |
| ATTGCTGGCCATGACGAGAA+TGG | + | chr1.1:79316004-79316023 | MS.gene76217:CDS | 50.0% | |
| CAACCCCAAAAGTGGGATAG+AGG | - | chr1.1:79314838-79314857 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1.1:79314407-79314426 | None:intergenic | 50.0% | |
| CAGCTTGGATCAACTGCGAT+TGG | + | chr1.1:79314251-79314270 | MS.gene76217:intron | 50.0% | |
| CATTCTCTCCTCGAATGGAG+AGG | + | chr1.1:79317874-79317893 | MS.gene76217:intron | 50.0% | |
| CCAACAACGTTGACATTGCC+AGG | + | chr1.1:79318450-79318469 | MS.gene76217:CDS | 50.0% | |
| CCTGGCAATGTCAACGTTGT+TGG | - | chr1.1:79318453-79318472 | None:intergenic | 50.0% | |
| CTCTCCATTCGAGGAGAGAA+TGG | - | chr1.1:79317876-79317895 | None:intergenic | 50.0% | |
| CTTTGGCAGTCTCGACCATT+TGG | + | chr1.1:79315968-79315987 | MS.gene76217:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGGAA+AGG | - | chr1.1:79313926-79313945 | None:intergenic | 50.0% | |
| GAGGGGAGTCAAATCACTAG+AGG | - | chr1.1:79317496-79317515 | None:intergenic | 50.0% | |
| GCACATGTTTGTCTTGGTGG+TGG | + | chr1.1:79314890-79314909 | MS.gene76217:intron | 50.0% | |
| GCGTAGTCAATCCTGCATTG+TGG | - | chr1.1:79314872-79314891 | None:intergenic | 50.0% | |
| GCGTATTACTTCGCCTCTAC+TGG | + | chr1.1:79314313-79314332 | MS.gene76217:CDS | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | - | chr1.1:79317513-79317532 | None:intergenic | 50.0% | |
| GTCAATCCTGCATTGTGGTG+CGG | - | chr1.1:79314867-79314886 | None:intergenic | 50.0% | |
| GTTTGTCAATAGCGCCGCTA+TGG | + | chr1.1:79314720-79314739 | MS.gene76217:intron | 50.0% | |
| TATAGATGACGAACCCTCGC+TGG | + | chr1.1:79317630-79317649 | MS.gene76217:intron | 50.0% | |
| TCAGTTTAGCAGTGCGGAGT+GGG | + | chr1.1:79314776-79314795 | MS.gene76217:intron | 50.0% | |
| TCTCGTCATGGCCAGCAATA+AGG | - | chr1.1:79316003-79316022 | None:intergenic | 50.0% | |
| TCTTTATACCCCGTCTGAGG+TGG | + | chr1.1:79318490-79318509 | MS.gene76217:CDS | 50.0% | |
| ! | CACATTGGCTGTGCAATGAG+TGG | + | chr1.1:79315217-79315236 | MS.gene76217:CDS | 50.0% |
| ! | GCATGCACGAGTTGAAACTC+AGG | + | chr1.1:79315270-79315289 | MS.gene76217:CDS | 50.0% |
| ! | GGAGTGTCTCTCCTTATTGC+TGG | + | chr1.1:79315989-79316008 | MS.gene76217:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1.1:79314442-79314461 | MS.gene76217:intron | 55.0% | |
| AGTTTAGCAGTGCGGAGTGG+GGG | + | chr1.1:79314778-79314797 | MS.gene76217:intron | 55.0% | |
| ATCACCTTCCCCAAAGCGCA+AGG | - | chr1.1:79315520-79315539 | None:intergenic | 55.0% | |
| ATGATACGCTGGAGCAACCC+TGG | - | chr1.1:79318471-79318490 | None:intergenic | 55.0% | |
| CAGTAGGGGGGACAAACAAC+TGG | - | chr1.1:79318382-79318401 | None:intergenic | 55.0% | |
| CAGTTTAGCAGTGCGGAGTG+GGG | + | chr1.1:79314777-79314796 | MS.gene76217:intron | 55.0% | |
| CTGCCCTAAAAAGGGCAACC+CGG | - | chr1.1:79314565-79314584 | None:intergenic | 55.0% | |
| GAGCGGTCAACCCCAAAAGT+GGG | - | chr1.1:79314845-79314864 | None:intergenic | 55.0% | |
| GGCTAGGTCCATTCTCGTCA+TGG | - | chr1.1:79316015-79316034 | None:intergenic | 55.0% | |
| GTCAGTTTAGCAGTGCGGAG+TGG | + | chr1.1:79314775-79314794 | MS.gene76217:intron | 55.0% | |
| TCAATAGCGCCGCTATGGTG+AGG | + | chr1.1:79314725-79314744 | MS.gene76217:intron | 55.0% | |
| TCACAGCTTCCACCTCAGAC+GGG | - | chr1.1:79318502-79318521 | None:intergenic | 55.0% | |
| TCCCGAGGGACGTTTGTTTC+AGG | + | chr1.1:79314102-79314121 | MS.gene76217:CDS | 55.0% | |
| TGTCCACAAACTTGCGGTGG+GGG | + | chr1.1:79314977-79314996 | MS.gene76217:intron | 55.0% | |
| TTAAGAGGGGTGACCAGCGA+GGG | - | chr1.1:79317646-79317665 | None:intergenic | 55.0% | |
| ! | GCACCGGGTTGCCCTTTTTA+GGG | + | chr1.1:79314559-79314578 | MS.gene76217:intron | 55.0% |
| ! | TGCACCGGGTTGCCCTTTTT+AGG | + | chr1.1:79314558-79314577 | MS.gene76217:intron | 55.0% |
| !! | CTGGACCATTGGTCTTGCTG+AGG | + | chr1.1:79316945-79316964 | MS.gene76217:intron | 55.0% |
| !! | GTGACCTAGCCTTGCGCTTT+GGG | + | chr1.1:79315508-79315527 | MS.gene76217:CDS | 55.0% |
| !! | TGACCTAGCCTTGCGCTTTG+GGG | + | chr1.1:79315509-79315528 | MS.gene76217:CDS | 55.0% |
| !! | TGTGACCTAGCCTTGCGCTT+TGG | + | chr1.1:79315507-79315526 | MS.gene76217:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1.1:79314396-79314415 | MS.gene76217:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | + | chr1.1:79314543-79314562 | MS.gene76217:intron | 60.0% | |
| CACAGCTTCCACCTCAGACG+GGG | - | chr1.1:79318501-79318520 | None:intergenic | 60.0% | |
| CACTGCTGGGCTCCTGAAAG+TGG | - | chr1.1:79315171-79315190 | None:intergenic | 60.0% | |
| CATACGCAAGGTCCGGGAAG+GGG | - | chr1.1:79314526-79314545 | None:intergenic | 60.0% | |
| CTCCACAGTTGGAGAGGAGC+TGG | - | chr1.1:79317214-79317233 | None:intergenic | 60.0% | |
| CTGAAGCTCCCGCATACGCA+AGG | - | chr1.1:79314538-79314557 | None:intergenic | 60.0% | |
| CTTAAGAGGGGTGACCAGCG+AGG | - | chr1.1:79317647-79317666 | None:intergenic | 60.0% | |
| CTTCCCCAAAGCGCAAGGCT+AGG | - | chr1.1:79315515-79315534 | None:intergenic | 60.0% | |
| CTTCCCGGACCTTGCGTATG+CGG | + | chr1.1:79314526-79314545 | MS.gene76217:intron | 60.0% | |
| CTTTCAGGAGCCCAGCAGTG+TGG | + | chr1.1:79315171-79315190 | MS.gene76217:intron | 60.0% | |
| GCATACGCAAGGTCCGGGAA+GGG | - | chr1.1:79314527-79314546 | None:intergenic | 60.0% | |
| GGAGCGGTCAACCCCAAAAG+TGG | - | chr1.1:79314846-79314865 | None:intergenic | 60.0% | |
| GTCCAGCTCCTCTCCAACTG+TGG | + | chr1.1:79317209-79317228 | MS.gene76217:intron | 60.0% | |
| TCACCCCCACCGCAAGTTTG+TGG | - | chr1.1:79314983-79315002 | None:intergenic | 60.0% | |
| TCCTGCATTGTGGTGCGGAG+CGG | - | chr1.1:79314862-79314881 | None:intergenic | 60.0% | |
| TTCCCGGACCTTGCGTATGC+GGG | + | chr1.1:79314527-79314546 | MS.gene76217:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1.1:79314511-79314530 | MS.gene76217:intron | 60.0% |
| !! | CTAGCCTTGCGCTTTGGGGA+AGG | + | chr1.1:79315513-79315532 | MS.gene76217:CDS | 60.0% |
| ACCGCTCCGCACCACAATGC+AGG | + | chr1.1:79314858-79314877 | MS.gene76217:intron | 65.0% | |
| CGCATACGCAAGGTCCGGGA+AGG | - | chr1.1:79314528-79314547 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1.1:79314513-79314532 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAAGGTCC+GGG | - | chr1.1:79314532-79314551 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAAGGTC+CGG | - | chr1.1:79314533-79314552 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | + | chr1.1:79314544-79314563 | MS.gene76217:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79313902 | 79318535 | 79313902 | ID=MS.gene76217 |
| chr1.1 | mRNA | 79313902 | 79318535 | 79313902 | ID=MS.gene76217.t1;Parent=MS.gene76217 |
| chr1.1 | exon | 79313902 | 79313915 | 79313902 | ID=MS.gene76217.t1.exon1;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79313902 | 79313915 | 79313902 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79314069 | 79314150 | 79314069 | ID=MS.gene76217.t1.exon2;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79314069 | 79314150 | 79314069 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79314254 | 79314334 | 79314254 | ID=MS.gene76217.t1.exon3;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79314254 | 79314334 | 79314254 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79315178 | 79315291 | 79315178 | ID=MS.gene76217.t1.exon4;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79315178 | 79315291 | 79315178 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79315450 | 79315551 | 79315450 | ID=MS.gene76217.t1.exon5;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79315450 | 79315551 | 79315450 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79315977 | 79316035 | 79315977 | ID=MS.gene76217.t1.exon6;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79315977 | 79316035 | 79315977 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79316988 | 79317090 | 79316988 | ID=MS.gene76217.t1.exon7;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79316988 | 79317090 | 79316988 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79318284 | 79318349 | 79318284 | ID=MS.gene76217.t1.exon8;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79318284 | 79318349 | 79318284 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| chr1.1 | exon | 79318443 | 79318535 | 79318443 | ID=MS.gene76217.t1.exon9;Parent=MS.gene76217.t1 |
| chr1.1 | CDS | 79318443 | 79318535 | 79318443 | ID=cds.MS.gene76217.t1;Parent=MS.gene76217.t1 |
| Gene Sequence |
| Protein sequence |
