Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74417.t1 | XP_013451443.1 | 100 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 2.90E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74417.t1 | O24362 | 88.8 | 249 | 28 | 0 | 1 | 249 | 1 | 249 | 6.8e-128 | 458.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74417.t1 | A0A072U8Q5 | 100.0 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 2.1e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74417.t1 | MTR_6g024135 | 100.000 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 0.0 | 514 |
| MS.gene74417.t1 | MTR_0167s0060 | 36.612 | 183 | 116 | 0 | 8 | 190 | 6 | 188 | 4.64e-39 | 135 |
| MS.gene74417.t1 | MTR_1g022410 | 40.838 | 191 | 108 | 3 | 8 | 196 | 6 | 193 | 1.19e-38 | 136 |
| MS.gene74417.t1 | MTR_1g112250 | 34.783 | 207 | 120 | 2 | 6 | 203 | 6 | 206 | 4.45e-38 | 133 |
| MS.gene74417.t1 | MTR_7g070070 | 35.071 | 211 | 135 | 2 | 8 | 216 | 5 | 215 | 9.53e-38 | 133 |
| MS.gene74417.t1 | MTR_5g016590 | 35.071 | 211 | 135 | 2 | 8 | 216 | 5 | 215 | 2.10e-37 | 132 |
| MS.gene74417.t1 | MTR_8g464460 | 36.932 | 176 | 109 | 2 | 5 | 178 | 6 | 181 | 2.56e-32 | 119 |
| MS.gene74417.t1 | MTR_2g060830 | 35.227 | 176 | 112 | 2 | 5 | 178 | 6 | 181 | 3.03e-32 | 118 |
| MS.gene74417.t1 | MTR_8g075320 | 35.260 | 173 | 110 | 1 | 8 | 178 | 4 | 176 | 1.62e-29 | 111 |
| MS.gene74417.t1 | MTR_2g016050 | 35.260 | 173 | 110 | 1 | 8 | 178 | 4 | 176 | 4.98e-28 | 107 |
| MS.gene74417.t1 | MTR_4g012740 | 28.696 | 230 | 119 | 6 | 8 | 196 | 237 | 462 | 1.53e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74417.t1 | AT2G27020 | 86.747 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 5.30e-168 | 464 |
| MS.gene74417.t1 | AT2G27020 | 86.747 | 249 | 33 | 0 | 1 | 249 | 103 | 351 | 1.22e-166 | 464 |
| MS.gene74417.t1 | AT1G47250 | 42.105 | 171 | 97 | 1 | 8 | 178 | 6 | 174 | 6.85e-39 | 136 |
| MS.gene74417.t1 | AT1G16470 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 6.85e-39 | 135 |
| MS.gene74417.t1 | AT1G16470 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 6.85e-39 | 135 |
| MS.gene74417.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.05e-39 | 135 |
| MS.gene74417.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.05e-39 | 135 |
| MS.gene74417.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.05e-39 | 135 |
| MS.gene74417.t1 | AT5G42790 | 42.105 | 171 | 97 | 1 | 8 | 178 | 6 | 174 | 1.13e-38 | 136 |
| MS.gene74417.t1 | AT3G14290 | 34.783 | 207 | 120 | 2 | 6 | 203 | 6 | 206 | 3.60e-38 | 134 |
| MS.gene74417.t1 | AT1G53850 | 34.300 | 207 | 121 | 2 | 6 | 203 | 6 | 206 | 9.44e-38 | 132 |
| MS.gene74417.t1 | AT1G53850 | 34.300 | 207 | 121 | 2 | 6 | 203 | 6 | 206 | 9.44e-38 | 132 |
| MS.gene74417.t1 | AT3G22110 | 34.783 | 230 | 143 | 5 | 8 | 231 | 5 | 233 | 2.50e-37 | 132 |
| MS.gene74417.t1 | AT5G35590 | 34.659 | 176 | 113 | 2 | 5 | 178 | 6 | 181 | 1.75e-32 | 119 |
| MS.gene74417.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 1.35e-31 | 116 |
| MS.gene74417.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 1.99e-31 | 116 |
| MS.gene74417.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 2.26e-31 | 115 |
| MS.gene74417.t1 | AT5G66140 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 1.33e-28 | 109 |
| MS.gene74417.t1 | AT3G51260 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 1.59e-28 | 108 |
| MS.gene74417.t1 | AT3G51260 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 2.70e-28 | 108 |
| MS.gene74417.t1 | AT4G15165 | 30.144 | 209 | 102 | 5 | 8 | 214 | 5 | 171 | 2.32e-20 | 86.3 |
Find 63 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTTTCAGAGGTATTT+TGG | 0.204212 | 6.4:-547810 | MS.gene74417:intron |
| CCTTCGAAAATGATGCTTTC+GGG | 0.215701 | 6.4:-549454 | MS.gene74417:CDS |
| CTTTGTTGCAGGACTGTTAT+TGG | 0.259652 | 6.4:-549620 | MS.gene74417:intron |
| TAATCTTGCTGCAGACCTTT+TGG | 0.265690 | 6.4:-548019 | MS.gene74417:intron |
| GCAAGTTCCTTGACAGGAAT+TGG | 0.290742 | 6.4:+548170 | None:intergenic |
| ATGCAAGGATGGAATTGTTT+TGG | 0.316941 | 6.4:-549591 | MS.gene74417:intron |
| CCCTTCGAAAATGATGCTTT+CGG | 0.324696 | 6.4:-549455 | MS.gene74417:CDS |
| TTTGTTGCAGGACTGTTATT+GGG | 0.353425 | 6.4:-549619 | MS.gene74417:intron |
| TGTGCAGAGGTGCACGTAAC+TGG | 0.359168 | 6.4:+548136 | None:intergenic |
| GCCAAAGCTGTCGACAATAG+TGG | 0.361107 | 6.4:-550530 | MS.gene74417:CDS |
| ATCTGGAAAACGCGACCATC+AGG | 0.383550 | 6.4:+550563 | None:intergenic |
| AACGGCGTGAATTCTTCTAT+TGG | 0.385310 | 6.4:+549429 | None:intergenic |
| AGCTAATTTAGCTGCTGTCT+TGG | 0.388328 | 6.4:+546114 | None:intergenic |
| TGCACCTCTGCACATTATAC+TGG | 0.388962 | 6.4:-548127 | MS.gene74417:CDS |
| TTGTACATGGTCGAACCTTC+TGG | 0.390091 | 6.4:-547953 | MS.gene74417:CDS |
| TAAATTAGCTCTTGAAGAAA+TGG | 0.390363 | 6.4:-546101 | MS.gene74417:CDS |
| TTGTGCAAATGCAGTATATA+TGG | 0.408846 | 6.4:-546547 | MS.gene74417:intron |
| CCCACTATTGTCGACAGCTT+TGG | 0.424001 | 6.4:+550529 | None:intergenic |
| CTTTGGCAGCATATTCGATC+TGG | 0.428766 | 6.4:+550546 | None:intergenic |
| TTTGGATGTGGTGTCATACT+AGG | 0.432245 | 6.4:-548001 | MS.gene74417:CDS |
| GCTTCTTCTAGAAGCTCCTC+TGG | 0.439481 | 6.4:+546136 | None:intergenic |
| CTACTTCAATAACTCCTTGT+CGG | 0.461671 | 6.4:+546661 | None:intergenic |
| CACGCCGTTCATCGCCACTC+TGG | 0.470804 | 6.4:-549415 | MS.gene74417:CDS |
| CCTGTCGTAGTTAGTTGCTT+CGG | 0.482274 | 6.4:+548746 | None:intergenic |
| ATGGAAGGCAAATTGTTGCC+AGG | 0.483133 | 6.4:-548776 | MS.gene74417:CDS |
| TTCAATAACTCCTTGTCGGC+AGG | 0.484664 | 6.4:+546665 | None:intergenic |
| ATTTCGAACTCGAAATGAGC+TGG | 0.484940 | 6.4:-546498 | MS.gene74417:CDS |
| ATCATGAGTAGCATTGGAAC+AGG | 0.485653 | 6.4:-550614 | MS.gene74417:CDS |
| ATCAAACCGTCAACATGAAA+AGG | 0.490739 | 6.4:-546464 | MS.gene74417:intron |
| TCAGCAATCATGAGTAGCAT+TGG | 0.498196 | 6.4:-550620 | None:intergenic |
| TGCAATCGGGAAGGGCAGAC+AGG | 0.508389 | 6.4:-547784 | MS.gene74417:CDS |
| AGTTGCTTCGGACTTAGCCC+TGG | 0.513490 | 6.4:+548758 | None:intergenic |
| CGATCAGCAAGTTCCTTGAC+AGG | 0.529831 | 6.4:+548164 | None:intergenic |
| GTCACTACTTTCTCTCCTGA+TGG | 0.533196 | 6.4:-550578 | MS.gene74417:CDS |
| GCACATTATACTGGTGGCTC+AGG | 0.538022 | 6.4:-548118 | MS.gene74417:intron |
| CCGAAGCAACTAACTACGAC+AGG | 0.544505 | 6.4:-548746 | MS.gene74417:intron |
| CAGGATTAGCTGCAGATGGA+AGG | 0.556190 | 6.4:-548791 | MS.gene74417:CDS |
| AGTATGACACCACATCCAAA+AGG | 0.565132 | 6.4:+548004 | None:intergenic |
| CCAAAGCTGTCGACAATAGT+GGG | 0.566060 | 6.4:-550529 | MS.gene74417:intron |
| TTTGGTGCTGCAATCGGGAA+GGG | 0.566694 | 6.4:-547792 | MS.gene74417:CDS |
| TGGAGTTCATGACGAGGCAA+AGG | 0.579021 | 6.4:-546527 | MS.gene74417:CDS |
| CGTTCATCGCCACTCTGGAA+TGG | 0.579273 | 6.4:-549410 | MS.gene74417:intron |
| CATTCCAGAGTGGCGATGAA+CGG | 0.580559 | 6.4:+549411 | None:intergenic |
| GTAGCAGGATTAGCTGCAGA+TGG | 0.580997 | 6.4:-548795 | MS.gene74417:CDS |
| AGATGGACCACAGTTGTACA+TGG | 0.581771 | 6.4:-547966 | MS.gene74417:CDS |
| TGGTGATCCAATTCCTGTCA+AGG | 0.583937 | 6.4:-548177 | MS.gene74417:CDS |
| TGGAAGGCAAATTGTTGCCA+GGG | 0.588037 | 6.4:-548775 | MS.gene74417:CDS |
| GATTGAAAAGTTGAAGCTTG+CGG | 0.589401 | 6.4:-546694 | MS.gene74417:CDS |
| ACCTCTGCACATTATACTGG+TGG | 0.589474 | 6.4:-548124 | MS.gene74417:CDS |
| TGATTGTGTGCAGGTTCCAG+AGG | 0.592525 | 6.4:-546152 | MS.gene74417:intron |
| ATTGGGATCAGATGCAAGGA+TGG | 0.596379 | 6.4:-549602 | MS.gene74417:CDS |
| GCGGATATGACCTGCCGACA+AGG | 0.597273 | 6.4:-546675 | MS.gene74417:CDS |
| CAAGGAACTTGCTGATCGCG+TGG | 0.607658 | 6.4:-548159 | MS.gene74417:CDS |
| TTTCGAACTCGAAATGAGCT+GGG | 0.612900 | 6.4:-546497 | MS.gene74417:CDS |
| ATCAGGAGAGAAAGTAGTGA+CGG | 0.617907 | 6.4:+550580 | None:intergenic |
| CTAGGTGGTTACGACAGAGA+TGG | 0.638286 | 6.4:-547983 | MS.gene74417:CDS |
| TGTTATTGGGATCAGATGCA+AGG | 0.646757 | 6.4:-549606 | MS.gene74417:CDS |
| GGATGTGGTGTCATACTAGG+TGG | 0.653371 | 6.4:-547998 | MS.gene74417:CDS |
| GCCACCAGTATAATGTGCAG+AGG | 0.679994 | 6.4:+548123 | None:intergenic |
| CTCACATAAGAAACACCAGA+AGG | 0.684859 | 6.4:+547938 | None:intergenic |
| GGTTCGACCATGTACAACTG+TGG | 0.719686 | 6.4:+547959 | None:intergenic |
| AACAAAGTACCATTCCAGAG+TGG | 0.731365 | 6.4:+549401 | None:intergenic |
| TATATATGGAGTTCATGACG+AGG | 0.744573 | 6.4:-546533 | MS.gene74417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATTATTAATTAA+AGG | - | chr6.4:546940-546959 | MS.gene74417:intron | 0.0% |
| !! | AAAAAAATCAAAAATTAAAC+AGG | + | chr6.4:547176-547195 | None:intergenic | 10.0% |
| !! | TACATTTAATTAACAAAAAA+AGG | + | chr6.4:549889-549908 | None:intergenic | 10.0% |
| !!! | ATAATTTTATTTGTTTAACT+CGG | - | chr6.4:549507-549526 | MS.gene74417:intron | 10.0% |
| !!! | CAATTGAATTTTTTATTTTT+AGG | - | chr6.4:546307-546326 | MS.gene74417:intron | 10.0% |
| !!! | TTCTTTTAATTACTTATATA+TGG | - | chr6.4:550305-550324 | MS.gene74417:intron | 10.0% |
| !! | TAATAAGCATATTACATATA+AGG | + | chr6.4:549262-549281 | None:intergenic | 15.0% |
| !! | TCGATAAATATAAAAAATAC+TGG | - | chr6.4:549581-549600 | MS.gene74417:intron | 15.0% |
| !!! | AAACTTAAAACACAATATTT+TGG | - | chr6.4:549461-549480 | MS.gene74417:CDS | 15.0% |
| !!! | AAGTTTTTAATAAAGTTAGA+TGG | - | chr6.4:548068-548087 | MS.gene74417:intron | 15.0% |
| !!! | AGTTCATATTTTTATGTTTA+TGG | - | chr6.4:550425-550444 | MS.gene74417:intron | 15.0% |
| !!! | ATATTTTAGATACTAGTTTT+GGG | - | chr6.4:546798-546817 | MS.gene74417:intron | 15.0% |
| !!! | ATTTTAAGAATTGGAATTAA+GGG | - | chr6.4:546971-546990 | MS.gene74417:intron | 15.0% |
| !!! | ATTTTTTGTGATGTTAATAA+TGG | - | chr6.4:546244-546263 | MS.gene74417:intron | 15.0% |
| !!! | GTAGTTTTTATTTTAAGAAT+TGG | - | chr6.4:547006-547025 | MS.gene74417:intron | 15.0% |
| !!! | GTTTTAGTTATTTTAAGAAT+TGG | - | chr6.4:546962-546981 | MS.gene74417:intron | 15.0% |
| !!! | TATATTTTAGATACTAGTTT+TGG | - | chr6.4:546797-546816 | MS.gene74417:intron | 15.0% |
| !!! | TATTTTAAGAATTGGAATTA+AGG | - | chr6.4:546970-546989 | MS.gene74417:intron | 15.0% |
| !!! | TGAAATGTAGTTTTATTTTA+AGG | - | chr6.4:546858-546877 | MS.gene74417:intron | 15.0% |
| !!! | TTTATTTTAAGGTTTTTGTT+TGG | - | chr6.4:546869-546888 | MS.gene74417:intron | 15.0% |
| !!! | TTTTTTGTGATGTTAATAAT+GGG | - | chr6.4:546245-546264 | MS.gene74417:intron | 15.0% |
| !! | AAACATAGACAGTAATTAAA+AGG | + | chr6.4:549014-549033 | None:intergenic | 20.0% |
| !! | ATATTATTTACAGAATGCAA+AGG | + | chr6.4:549068-549087 | None:intergenic | 20.0% |
| !! | ATGTAATATGCTTATTAGAA+TGG | - | chr6.4:549265-549284 | MS.gene74417:intron | 20.0% |
| !! | CAGTAAAAAAAAAAATCACA+TGG | + | chr6.4:548856-548875 | None:intergenic | 20.0% |
| !! | CATTCTATATAATATGTAGT+AGG | + | chr6.4:547613-547632 | None:intergenic | 20.0% |
| !! | GTTATTATATTATTGTTCAG+TGG | - | chr6.4:549850-549869 | MS.gene74417:intron | 20.0% |
| !! | TGGTGTATTTAATCAAATAA+AGG | + | chr6.4:548021-548040 | None:intergenic | 20.0% |
| !! | TGTAAAACAAAATTCTGATA+TGG | + | chr6.4:549958-549977 | None:intergenic | 20.0% |
| !! | TGTATTTAATCAAATAAAGG+AGG | + | chr6.4:548018-548037 | None:intergenic | 20.0% |
| !! | TTTAATTACTGTCTATGTTT+GGG | - | chr6.4:549014-549033 | MS.gene74417:intron | 20.0% |
| !!! | AATTTGATAACTTGAAATAG+AGG | - | chr6.4:548259-548278 | MS.gene74417:intron | 20.0% |
| !!! | ACAAATCTTTTTCCAATTTT+AGG | - | chr6.4:547881-547900 | MS.gene74417:intron | 20.0% |
| !!! | ATTTTAAGAATTGGAATTGA+GGG | - | chr6.4:547015-547034 | MS.gene74417:intron | 20.0% |
| !!! | ATTTTTATCACATATTAGTC+AGG | + | chr6.4:548152-548171 | None:intergenic | 20.0% |
| !!! | TAGCTTATATGTTACTTTAA+AGG | - | chr6.4:549208-549227 | MS.gene74417:intron | 20.0% |
| !!! | TATTAGAAAAGTATCAACAA+TGG | + | chr6.4:547760-547779 | None:intergenic | 20.0% |
| !!! | TATTTTAAGAATTGGAATTG+AGG | - | chr6.4:547014-547033 | MS.gene74417:intron | 20.0% |
| !!! | TCTAAAATGAACAATAATTG+TGG | - | chr6.4:548985-549004 | MS.gene74417:intron | 20.0% |
| !!! | TGTTAATTTTTGTGCAAATT+TGG | - | chr6.4:547196-547215 | MS.gene74417:intron | 20.0% |
| !!! | TTTTAATTACTGTCTATGTT+TGG | - | chr6.4:549013-549032 | MS.gene74417:intron | 20.0% |
| !!! | TTTTACTGATTTGTTTGTAT+TGG | - | chr6.4:548868-548887 | MS.gene74417:intron | 20.0% |
| ! | AATCTATAAGAGAAACTGTT+AGG | - | chr6.4:546614-546633 | MS.gene74417:intron | 25.0% |
| ! | AATTAAATGTAACTCTTCTG+TGG | - | chr6.4:549898-549917 | MS.gene74417:intron | 25.0% |
| ! | AGAAGAATGTTTGTTTATTC+TGG | - | chr6.4:548479-548498 | MS.gene74417:intron | 25.0% |
| ! | ATAAAAAATCACTGTAGCTA+AGG | + | chr6.4:548830-548849 | None:intergenic | 25.0% |
| ! | ATAATGATCTCATTATTCTG+AGG | - | chr6.4:548438-548457 | MS.gene74417:intron | 25.0% |
| ! | TAGTTTGGACAAATAACATT+TGG | + | chr6.4:548178-548197 | None:intergenic | 25.0% |
| ! | TGTTCTGTAATATGCATTAT+AGG | - | chr6.4:546768-546787 | MS.gene74417:intron | 25.0% |
| ! | TTATATTATTGTTCAGTGGA+TGG | - | chr6.4:549854-549873 | MS.gene74417:intron | 25.0% |
| ! | TTCTATCATTCACCAAATTT+CGG | + | chr6.4:546657-546676 | None:intergenic | 25.0% |
| !! | AGAACGTGTGAAATTATTTT+AGG | - | chr6.4:548116-548135 | MS.gene74417:intron | 25.0% |
| !! | AGATTGTTATTCTGATAATC+TGG | - | chr6.4:547144-547163 | MS.gene74417:intron | 25.0% |
| !! | ATATTTCTTTTCAGTGTGTA+TGG | - | chr6.4:548504-548523 | MS.gene74417:intron | 25.0% |
| !! | ATTGTTATTCTGATAATCTG+GGG | - | chr6.4:547146-547165 | MS.gene74417:intron | 25.0% |
| !! | GATGTGAATCGTTTAAAATT+TGG | + | chr6.4:547637-547656 | None:intergenic | 25.0% |
| !! | GATTGTTATTCTGATAATCT+GGG | - | chr6.4:547145-547164 | MS.gene74417:intron | 25.0% |
| !! | GTTTCTCTTATAGATTTTCT+AGG | + | chr6.4:546610-546629 | None:intergenic | 25.0% |
| !! | TAAATTAGCTCTTGAAGAAA+TGG | - | chr6.4:550600-550619 | MS.gene74417:CDS | 25.0% |
| !! | TTGCATAGAATTGTAGTTTT+TGG | - | chr6.4:550485-550504 | MS.gene74417:intron | 25.0% |
| !!! | ATAAAGTTAGATGGACTAAT+AGG | - | chr6.4:548077-548096 | MS.gene74417:intron | 25.0% |
| !!! | GTTTTGTTTCTTTTAGGAAT+TGG | - | chr6.4:546401-546420 | MS.gene74417:intron | 25.0% |
| !!! | GTTTTTGGATTTGGAATTAT+GGG | - | chr6.4:546276-546295 | MS.gene74417:intron | 25.0% |
| !!! | TAATGGGTTTTGTTTCTTTT+AGG | - | chr6.4:546395-546414 | MS.gene74417:intron | 25.0% |
| !!! | TGCAAATTTGGTTGATTTTA+GGG | - | chr6.4:547208-547227 | MS.gene74417:intron | 25.0% |
| !!! | TGTTTTTGGATTTGGAATTA+TGG | - | chr6.4:546275-546294 | MS.gene74417:intron | 25.0% |
| !!! | TTCATCTGTTTGATTTGTAT+TGG | - | chr6.4:550357-550376 | MS.gene74417:intron | 25.0% |
| AAGTAATAGTTGCAAGCAAA+TGG | + | chr6.4:547987-548006 | None:intergenic | 30.0% | |
| AGAAACTGTTAGGAAAGATT+TGG | - | chr6.4:546624-546643 | MS.gene74417:intron | 30.0% | |
| AGTAAGGAGAGTAAATTAGA+TGG | - | chr6.4:546553-546572 | MS.gene74417:intron | 30.0% | |
| ATAACTTGAAATAGAGGTGA+AGG | - | chr6.4:548265-548284 | MS.gene74417:intron | 30.0% | |
| CATAATTTGATACATGTAGC+CGG | - | chr6.4:546685-546704 | MS.gene74417:CDS | 30.0% | |
| GAAAGACAGTAACAAAATGA+CGG | + | chr6.4:547340-547359 | None:intergenic | 30.0% | |
| GACGTATATATTGTGTAGTA+AGG | - | chr6.4:546537-546556 | MS.gene74417:intron | 30.0% | |
| GGTTTCTTGAAACTTGAAAT+AGG | - | chr6.4:548286-548305 | MS.gene74417:intron | 30.0% | |
| TAAGAGTGAAAGATTGTGAA+GGG | - | chr6.4:547410-547429 | MS.gene74417:intron | 30.0% | |
| TCAAACAGATGAAACAAATG+TGG | + | chr6.4:550350-550369 | None:intergenic | 30.0% | |
| TCTGGTCAAGACAAAAATAA+CGG | + | chr6.4:547385-547404 | None:intergenic | 30.0% | |
| TGGTGAATGATAGAACATTA+TGG | - | chr6.4:546662-546681 | MS.gene74417:CDS | 30.0% | |
| TTAGATTTGAACTTTGTTGC+AGG | - | chr6.4:547070-547089 | MS.gene74417:intron | 30.0% | |
| TTGTGCAAATGCAGTATATA+TGG | - | chr6.4:550154-550173 | MS.gene74417:intron | 30.0% | |
| ! | AGCTAGTGATTTTTGATAGA+TGG | - | chr6.4:546475-546494 | MS.gene74417:CDS | 30.0% |
| ! | CAAATAACTACTTTGAGTTC+CGG | - | chr6.4:549126-549145 | MS.gene74417:intron | 30.0% |
| ! | CAACTTTTCGAATCAAGTTT+TGG | - | chr6.4:546210-546229 | MS.gene74417:intron | 30.0% |
| ! | CGTTTGAGATTTGAAAGTAA+GGG | - | chr6.4:546829-546848 | MS.gene74417:intron | 30.0% |
| ! | GTTTGAGATTTGAAAGTAAG+GGG | - | chr6.4:546830-546849 | MS.gene74417:intron | 30.0% |
| ! | TAGTGATTTTTGATAGATGG+TGG | - | chr6.4:546478-546497 | MS.gene74417:CDS | 30.0% |
| ! | TCGTTTGAGATTTGAAAGTA+AGG | - | chr6.4:546828-546847 | MS.gene74417:intron | 30.0% |
| ! | TCTATCACTGAATGATCTTT+TGG | - | chr6.4:547464-547483 | MS.gene74417:intron | 30.0% |
| ! | TTGGATCTTAGTAGTTCTAT+GGG | - | chr6.4:547552-547571 | MS.gene74417:intron | 30.0% |
| ! | TTGTTATTCTGATAATCTGG+GGG | - | chr6.4:547147-547166 | MS.gene74417:intron | 30.0% |
| ! | TTTTGTTACTGTCTTTCGTT+TGG | - | chr6.4:547343-547362 | MS.gene74417:intron | 30.0% |
| !! | AGAAAAGTATCAACAATGGA+AGG | + | chr6.4:547756-547775 | None:intergenic | 30.0% |
| !! | CTTTTAGGAATTGGAATCAA+GGG | - | chr6.4:546410-546429 | MS.gene74417:intron | 30.0% |
| !! | GTGCAAATTTGGTTGATTTT+AGG | - | chr6.4:547207-547226 | MS.gene74417:intron | 30.0% |
| !! | TCTTTTAGGAATTGGAATCA+AGG | - | chr6.4:546409-546428 | MS.gene74417:intron | 30.0% |
| !!! | CATTTGTTTCAGAGGTATTT+TGG | - | chr6.4:548891-548910 | MS.gene74417:intron | 30.0% |
| !!! | GTGATGTTAATAATGGGTTT+TGG | - | chr6.4:546251-546270 | MS.gene74417:intron | 30.0% |
| !!! | GTTTTGGTTGTTTTTGGATT+TGG | - | chr6.4:546267-546286 | MS.gene74417:intron | 30.0% |
| !!! | TAATGGGTTTTGGTTGTTTT+TGG | - | chr6.4:546261-546280 | MS.gene74417:intron | 30.0% |
| AAACTTGAATGCATTTCGAC+AGG | + | chr6.4:550465-550484 | None:intergenic | 35.0% | |
| AACTTGAATGCATTTCGACA+GGG | + | chr6.4:550464-550483 | None:intergenic | 35.0% | |
| AAGAGTGAAAGATTGTGAAG+GGG | - | chr6.4:547411-547430 | MS.gene74417:intron | 35.0% | |
| AAGGAGAGTAAATTAGATGG+AGG | - | chr6.4:546556-546575 | MS.gene74417:intron | 35.0% | |
| ACAATCAATTTCGTAGCACA+TGG | + | chr6.4:550536-550555 | None:intergenic | 35.0% | |
| ACTACTGCCCAAAAAAATGA+TGG | + | chr6.4:549535-549554 | None:intergenic | 35.0% | |
| AGTAGCATTAAGTAGAAGCA+GGG | - | chr6.4:547490-547509 | MS.gene74417:intron | 35.0% | |
| ATCAAACCGTCAACATGAAA+AGG | - | chr6.4:550237-550256 | MS.gene74417:intron | 35.0% | |
| ATCTTGTGAATGTCTTTGCA+GGG | - | chr6.4:549983-550002 | MS.gene74417:intron | 35.0% | |
| CTAAGAGTGAAAGATTGTGA+AGG | - | chr6.4:547409-547428 | MS.gene74417:intron | 35.0% | |
| CTACTGCCCAAAAAAATGAT+GGG | + | chr6.4:549534-549553 | None:intergenic | 35.0% | |
| CTACTTCAATAACTCCTTGT+CGG | + | chr6.4:550043-550062 | None:intergenic | 35.0% | |
| GACTAATAGGAACCATATAG+TGG | - | chr6.4:548090-548109 | MS.gene74417:intron | 35.0% | |
| GAGAGATTAAGAAAAACTGC+AGG | - | chr6.4:549645-549664 | MS.gene74417:intron | 35.0% | |
| GATTGAAAAGTTGAAGCTTG+CGG | - | chr6.4:550007-550026 | MS.gene74417:intron | 35.0% | |
| TACACCATCTGTGATTGAAT+TGG | - | chr6.4:548034-548053 | MS.gene74417:intron | 35.0% | |
| TACTGCCCAAAAAAATGATG+GGG | + | chr6.4:549533-549552 | None:intergenic | 35.0% | |
| TATATATGGAGTTCATGACG+AGG | - | chr6.4:550168-550187 | MS.gene74417:intron | 35.0% | |
| TATCTTGTGAATGTCTTTGC+AGG | - | chr6.4:549982-550001 | MS.gene74417:intron | 35.0% | |
| TCTAACACGTCATCATAGTT+TGG | + | chr6.4:548193-548212 | None:intergenic | 35.0% | |
| TCTTTCACTCTTAGACATTC+TGG | + | chr6.4:547403-547422 | None:intergenic | 35.0% | |
| TTTGTTGCAGGACTGTTATT+GGG | - | chr6.4:547082-547101 | MS.gene74417:intron | 35.0% | |
| ! | AAACACTGCTTGATGATTGA+TGG | - | chr6.4:548351-548370 | MS.gene74417:intron | 35.0% |
| ! | AAACTATGATGACGTGTTAG+AGG | - | chr6.4:548192-548211 | MS.gene74417:intron | 35.0% |
| ! | ACACGTTCTTTTCCACTATA+TGG | + | chr6.4:548105-548124 | None:intergenic | 35.0% |
| ! | AGTTCTATGGGATTAGCATA+AGG | - | chr6.4:547564-547583 | MS.gene74417:intron | 35.0% |
| ! | ATGCAAGGATGGAATTGTTT+TGG | - | chr6.4:547110-547129 | MS.gene74417:intron | 35.0% |
| ! | ATGGTGGAAAATATGCTTAG+GGG | - | chr6.4:546494-546513 | MS.gene74417:CDS | 35.0% |
| ! | CTTGGATCTTAGTAGTTCTA+TGG | - | chr6.4:547551-547570 | MS.gene74417:intron | 35.0% |
| ! | TGGAATTGAGGGTTTTTGTT+TGG | - | chr6.4:547026-547045 | MS.gene74417:intron | 35.0% |
| ! | TGTATTGGCATTTGTTTCAG+AGG | - | chr6.4:548883-548902 | MS.gene74417:intron | 35.0% |
| !! | AGATGGTGGAAAATATGCTT+AGG | - | chr6.4:546492-546511 | MS.gene74417:CDS | 35.0% |
| !! | GAGTTGATTTGGACTATCTT+TGG | - | chr6.4:549690-549709 | MS.gene74417:intron | 35.0% |
| !! | GATGGTGGAAAATATGCTTA+GGG | - | chr6.4:546493-546512 | MS.gene74417:CDS | 35.0% |
| !! | GGTAATAAGTGTTGAACAGA+GGG | - | chr6.4:549602-549621 | MS.gene74417:CDS | 35.0% |
| !! | TGGTAATAAGTGTTGAACAG+AGG | - | chr6.4:549601-549620 | MS.gene74417:CDS | 35.0% |
| !! | TGTTAGGAAAGATTTGGTGT+TGG | - | chr6.4:546630-546649 | MS.gene74417:intron | 35.0% |
| !!! | CATTTTTTTGGGCAGTAGTA+TGG | - | chr6.4:549536-549555 | MS.gene74417:intron | 35.0% |
| AACGGCGTGAATTCTTCTAT+TGG | + | chr6.4:547275-547294 | None:intergenic | 40.0% | |
| ACCGTCAACATGAAAAGGTA+AGG | - | chr6.4:550242-550261 | MS.gene74417:intron | 40.0% | |
| AGCTAATTTAGCTGCTGTCT+TGG | + | chr6.4:550590-550609 | None:intergenic | 40.0% | |
| AGTATGACACCACATCCAAA+AGG | + | chr6.4:548700-548719 | None:intergenic | 40.0% | |
| ATCAGGAGAGAAAGTAGTGA+CGG | + | chr6.4:546124-546143 | None:intergenic | 40.0% | |
| ATCCTGCTACAGCCTAAAAT+TGG | + | chr6.4:547896-547915 | None:intergenic | 40.0% | |
| ATTTCGAACTCGAAATGAGC+TGG | - | chr6.4:550203-550222 | MS.gene74417:intron | 40.0% | |
| ATTTGACAATCAGCTGCTGA+AGG | - | chr6.4:549173-549192 | MS.gene74417:intron | 40.0% | |
| CAACATGAAAAGGTAAGGCA+GGG | - | chr6.4:550247-550266 | MS.gene74417:intron | 40.0% | |
| CAGTAGCATTAAGTAGAAGC+AGG | - | chr6.4:547489-547508 | MS.gene74417:intron | 40.0% | |
| CCCTTCGAAAATGATGCTTT+CGG | - | chr6.4:547246-547265 | MS.gene74417:intron | 40.0% | |
| CCTTCGAAAATGATGCTTTC+GGG | - | chr6.4:547247-547266 | MS.gene74417:intron | 40.0% | |
| CTACGAAATTGATTGTGTGC+AGG | - | chr6.4:550540-550559 | MS.gene74417:CDS | 40.0% | |
| CTCACATAAGAAACACCAGA+AGG | + | chr6.4:548766-548785 | None:intergenic | 40.0% | |
| CTTCAAAAGAAGAGCCTCTA+AGG | + | chr6.4:549391-549410 | None:intergenic | 40.0% | |
| CTTTGTTGCAGGACTGTTAT+TGG | - | chr6.4:547081-547100 | MS.gene74417:intron | 40.0% | |
| GAAAATATGCTTAGGGGGTT+TGG | - | chr6.4:546500-546519 | MS.gene74417:CDS | 40.0% | |
| GCATCCAATTCAATCACAGA+TGG | + | chr6.4:548041-548060 | None:intergenic | 40.0% | |
| GGAGGATAGTAGATAACTAG+AGG | - | chr6.4:546574-546593 | MS.gene74417:intron | 40.0% | |
| GGAGGGTAGTTCAATAAGTA+GGG | - | chr6.4:549623-549642 | MS.gene74417:intron | 40.0% | |
| TAAGCCATGACAAGGAACTA+TGG | - | chr6.4:549716-549735 | MS.gene74417:intron | 40.0% | |
| TAAGTAGAAGCAGGGTTCTA+AGG | - | chr6.4:547498-547517 | MS.gene74417:intron | 40.0% | |
| TAGTAGATAACTAGAGGCAG+AGG | - | chr6.4:546580-546599 | MS.gene74417:intron | 40.0% | |
| TATGTTGAGGCATGAGCAAA+GGG | + | chr6.4:549352-549371 | None:intergenic | 40.0% | |
| TCAACATGAAAAGGTAAGGC+AGG | - | chr6.4:550246-550265 | MS.gene74417:intron | 40.0% | |
| TCCAAGACAAATAAACACGC+AGG | + | chr6.4:547537-547556 | None:intergenic | 40.0% | |
| TCCTGCGTGTTTATTTGTCT+TGG | - | chr6.4:547533-547552 | MS.gene74417:intron | 40.0% | |
| TGGTGGAAAATATGCTTAGG+GGG | - | chr6.4:546495-546514 | MS.gene74417:CDS | 40.0% | |
| TGTTATTGGGATCAGATGCA+AGG | - | chr6.4:547095-547114 | MS.gene74417:intron | 40.0% | |
| TGTTCTATCCTAACACGTGT+CGG | - | chr6.4:548634-548653 | MS.gene74417:intron | 40.0% | |
| TTAAGTTCTTGTGTGCACCT+GGG | - | chr6.4:547694-547713 | MS.gene74417:intron | 40.0% | |
| TTGTACCCTCCCTAAAACAA+CGG | + | chr6.4:549443-549462 | None:intergenic | 40.0% | |
| TTTCGAACTCGAAATGAGCT+GGG | - | chr6.4:550204-550223 | MS.gene74417:intron | 40.0% | |
| TTTGGACATAAGCCATGACA+AGG | - | chr6.4:549708-549727 | MS.gene74417:intron | 40.0% | |
| ! | AACAAAGTACCATTCCAGAG+TGG | + | chr6.4:547303-547322 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTCCGGTTACAT+GGG | - | chr6.4:549135-549154 | MS.gene74417:intron | 40.0% |
| ! | AGCGAGATTGAGAGTTGATT+TGG | - | chr6.4:549679-549698 | MS.gene74417:intron | 40.0% |
| ! | CAATTGAACCTTTTCTCGCT+AGG | + | chr6.4:549777-549796 | None:intergenic | 40.0% |
| ! | CTTTTCCTACTATGTGGAAC+CGG | + | chr6.4:546707-546726 | None:intergenic | 40.0% |
| ! | GCCTTACCTTTTCATGTTGA+CGG | + | chr6.4:550246-550265 | None:intergenic | 40.0% |
| ! | TAATCTTGCTGCAGACCTTT+TGG | - | chr6.4:548682-548701 | MS.gene74417:intron | 40.0% |
| ! | TACTTTGAGTTCCGGTTACA+TGG | - | chr6.4:549134-549153 | MS.gene74417:intron | 40.0% |
| ! | TTCCAATTTTAGGCTGTAGC+AGG | - | chr6.4:547891-547910 | MS.gene74417:intron | 40.0% |
| !! | AATAAGTGTTGAACAGAGGG+AGG | - | chr6.4:549605-549624 | MS.gene74417:CDS | 40.0% |
| !! | ATAAGTGTTGAACAGAGGGA+GGG | - | chr6.4:549606-549625 | MS.gene74417:CDS | 40.0% |
| !! | TTTGGATGTGGTGTCATACT+AGG | - | chr6.4:548700-548719 | MS.gene74417:intron | 40.0% |
| !! | TTTGGTGTTGGACCGAAATT+TGG | - | chr6.4:546642-546661 | MS.gene74417:intron | 40.0% |
| !!! | AGGTATTTTGGTGCTGCAAT+CGG | - | chr6.4:548903-548922 | MS.gene74417:intron | 40.0% |
| !!! | CCGAAAGCATCATTTTCGAA+GGG | + | chr6.4:547249-547268 | None:intergenic | 40.0% |
| AACAGAGATCCCCATGTAAC+CGG | + | chr6.4:549148-549167 | None:intergenic | 45.0% | |
| ACCTCTGCACATTATACTGG+TGG | - | chr6.4:548577-548596 | MS.gene74417:intron | 45.0% | |
| AGATGGACCACAGTTGTACA+TGG | - | chr6.4:548735-548754 | MS.gene74417:intron | 45.0% | |
| ATGCATTTCGACAGGGATTG+TGG | + | chr6.4:550457-550476 | None:intergenic | 45.0% | |
| ATGGAAGGCAAATTGTTGCC+AGG | - | chr6.4:547925-547944 | MS.gene74417:intron | 45.0% | |
| ATGTTGAGGCATGAGCAAAG+GGG | + | chr6.4:549351-549370 | None:intergenic | 45.0% | |
| ATTGGGATCAGATGCAAGGA+TGG | - | chr6.4:547099-547118 | MS.gene74417:intron | 45.0% | |
| CAAAGCGCACAAGTATGTTG+AGG | + | chr6.4:549365-549384 | None:intergenic | 45.0% | |
| CCAAAGCTGTCGACAATAGT+GGG | - | chr6.4:546172-546191 | MS.gene74417:intron | 45.0% | |
| CCACATAGTAGGAAAAGGCT+TGG | - | chr6.4:546710-546729 | MS.gene74417:intron | 45.0% | |
| CCTGTCGTAGTTAGTTGCTT+CGG | + | chr6.4:547958-547977 | None:intergenic | 45.0% | |
| CGGTTCCACATAGTAGGAAA+AGG | - | chr6.4:546705-546724 | MS.gene74417:intron | 45.0% | |
| CTATGGCGTCGTTTGGTAAA+TGG | - | chr6.4:549733-549752 | MS.gene74417:intron | 45.0% | |
| CTTTGGCAGCATATTCGATC+TGG | + | chr6.4:546158-546177 | None:intergenic | 45.0% | |
| GCAAGTTCCTTGACAGGAAT+TGG | + | chr6.4:548534-548553 | None:intergenic | 45.0% | |
| GGGAGGGTAGTTCAATAAGT+AGG | - | chr6.4:549622-549641 | MS.gene74417:intron | 45.0% | |
| GTATGTTGAGGCATGAGCAA+AGG | + | chr6.4:549353-549372 | None:intergenic | 45.0% | |
| GTCACTACTTTCTCTCCTGA+TGG | - | chr6.4:546123-546142 | MS.gene74417:CDS | 45.0% | |
| GTTAAGTTCTTGTGTGCACC+TGG | - | chr6.4:547693-547712 | MS.gene74417:intron | 45.0% | |
| TAAGTTCTTGTGTGCACCTG+GGG | - | chr6.4:547695-547714 | MS.gene74417:intron | 45.0% | |
| TGATCCTACCTAGCGAGAAA+AGG | - | chr6.4:549766-549785 | MS.gene74417:intron | 45.0% | |
| TGCACCTCTGCACATTATAC+TGG | - | chr6.4:548574-548593 | MS.gene74417:intron | 45.0% | |
| TGGAAGGCAAATTGTTGCCA+GGG | - | chr6.4:547926-547945 | MS.gene74417:intron | 45.0% | |
| TGGTGATCCAATTCCTGTCA+AGG | - | chr6.4:548524-548543 | MS.gene74417:intron | 45.0% | |
| TTCAATAACTCCTTGTCGGC+AGG | + | chr6.4:550039-550058 | None:intergenic | 45.0% | |
| TTGTACATGGTCGAACCTTC+TGG | - | chr6.4:548748-548767 | MS.gene74417:CDS | 45.0% | |
| ! | AACATGGACTGTACCAGAGA+AGG | + | chr6.4:549317-549336 | None:intergenic | 45.0% |
| ! | ACATGGACTGTACCAGAGAA+GGG | + | chr6.4:549316-549335 | None:intergenic | 45.0% |
| ! | CCAAGCCTTTTCCTACTATG+TGG | + | chr6.4:546713-546732 | None:intergenic | 45.0% |
| ! | CTATGATGACGTGTTAGAGG+TGG | - | chr6.4:548195-548214 | MS.gene74417:intron | 45.0% |
| ! | CTTTGAGTTCCGGTTACATG+GGG | - | chr6.4:549136-549155 | MS.gene74417:intron | 45.0% |
| ! | GTAGGAAAAGGCTTGGTTGT+TGG | - | chr6.4:546717-546736 | MS.gene74417:intron | 45.0% |
| ! | TGAACCTTTTCTCGCTAGGT+AGG | + | chr6.4:549773-549792 | None:intergenic | 45.0% |
| ! | TGAAGTATCCGACACGTGTT+AGG | + | chr6.4:548645-548664 | None:intergenic | 45.0% |
| !! | TGCAAGTTTTGTCCCGTATG+AGG | - | chr6.4:549411-549430 | MS.gene74417:CDS | 45.0% |
| !!! | ACTCGGCCCCATCATTTTTT+TGG | - | chr6.4:549524-549543 | MS.gene74417:intron | 45.0% |
| !!! | CCCGAAAGCATCATTTTCGA+AGG | + | chr6.4:547250-547269 | None:intergenic | 45.0% |
| !!! | CTCGGCCCCATCATTTTTTT+GGG | - | chr6.4:549525-549544 | MS.gene74417:intron | 45.0% |
| !!! | GGTATTTTGGTGCTGCAATC+GGG | - | chr6.4:548904-548923 | MS.gene74417:intron | 45.0% |
| !!! | ATTTTTTTAGATATTAATAA+TGG | - | chr6.4:546378-546397 | MS.gene74417:intron | 5.0% |
| !!! | TTTTTTTAGATATTAATAAT+GGG | - | chr6.4:546379-546398 | MS.gene74417:intron | 5.0% |
| ACAGGCTGCGAAAACGTAAG+TGG | - | chr6.4:548935-548954 | MS.gene74417:intron | 50.0% | |
| AGGGGGGGTAGAAGAAAACA+TGG | + | chr6.4:549333-549352 | None:intergenic | 50.0% | |
| AGGGGGTTTGGACATGTAGA+GGG | - | chr6.4:546512-546531 | MS.gene74417:CDS | 50.0% | |
| ATCTGGAAAACGCGACCATC+AGG | + | chr6.4:546141-546160 | None:intergenic | 50.0% | |
| CAAGGAACTATGGCGTCGTT+TGG | - | chr6.4:549726-549745 | MS.gene74417:intron | 50.0% | |
| CATTCCAGAGTGGCGATGAA+CGG | + | chr6.4:547293-547312 | None:intergenic | 50.0% | |
| CCCACTATTGTCGACAGCTT+TGG | + | chr6.4:546175-546194 | None:intergenic | 50.0% | |
| CCGAAGCAACTAACTACGAC+AGG | - | chr6.4:547955-547974 | MS.gene74417:CDS | 50.0% | |
| CGATCAGCAAGTTCCTTGAC+AGG | + | chr6.4:548540-548559 | None:intergenic | 50.0% | |
| CTAGGTGGTTACGACAGAGA+TGG | - | chr6.4:548718-548737 | MS.gene74417:intron | 50.0% | |
| GACGCCATAGTTCCTTGTCA+TGG | + | chr6.4:549723-549742 | None:intergenic | 50.0% | |
| GCACATTATACTGGTGGCTC+AGG | - | chr6.4:548583-548602 | MS.gene74417:intron | 50.0% | |
| GCCAAAGCTGTCGACAATAG+TGG | - | chr6.4:546171-546190 | MS.gene74417:intron | 50.0% | |
| GCCACCAGTATAATGTGCAG+AGG | + | chr6.4:548581-548600 | None:intergenic | 50.0% | |
| GGTTCGACCATGTACAACTG+TGG | + | chr6.4:548745-548764 | None:intergenic | 50.0% | |
| TAGGGGGTTTGGACATGTAG+AGG | - | chr6.4:546511-546530 | MS.gene74417:CDS | 50.0% | |
| TGATTGTGTGCAGGTTCCAG+AGG | - | chr6.4:550549-550568 | MS.gene74417:CDS | 50.0% | |
| TGGAGTTCATGACGAGGCAA+AGG | - | chr6.4:550174-550193 | MS.gene74417:intron | 50.0% | |
| TGTTGAGGCATGAGCAAAGG+GGG | + | chr6.4:549350-549369 | None:intergenic | 50.0% | |
| ! | GCTTCTTCTAGAAGCTCCTC+TGG | + | chr6.4:550568-550587 | None:intergenic | 50.0% |
| ! | TGCTGCAGACCTTTTGGATG+TGG | - | chr6.4:548688-548707 | MS.gene74417:intron | 50.0% |
| ! | TGTAGCCGGTTCCACATAGT+AGG | - | chr6.4:546699-546718 | MS.gene74417:CDS | 50.0% |
| !! | AGCTGTCGACAATAGTGGGT+AGG | - | chr6.4:546176-546195 | MS.gene74417:intron | 50.0% |
| !! | AGGCTGCTGCCGTTGTTTTA+GGG | - | chr6.4:549431-549450 | MS.gene74417:CDS | 50.0% |
| !! | CAGGATTAGCTGCAGATGGA+AGG | - | chr6.4:547910-547929 | MS.gene74417:intron | 50.0% |
| !! | GCTGTCGACAATAGTGGGTA+GGG | - | chr6.4:546177-546196 | MS.gene74417:intron | 50.0% |
| !! | GGATGTGGTGTCATACTAGG+TGG | - | chr6.4:548703-548722 | MS.gene74417:intron | 50.0% |
| !! | GTAGCAGGATTAGCTGCAGA+TGG | - | chr6.4:547906-547925 | MS.gene74417:intron | 50.0% |
| !! | TGTGCGCTTTGAAGCCTTAG+AGG | - | chr6.4:549374-549393 | MS.gene74417:intron | 50.0% |
| !! | TTTGGTGCTGCAATCGGGAA+GGG | - | chr6.4:548909-548928 | MS.gene74417:intron | 50.0% |
| !!! | TGCTGCCGTTGTTTTAGGGA+GGG | - | chr6.4:549435-549454 | MS.gene74417:CDS | 50.0% |
| !!! | TTTTGGTGCTGCAATCGGGA+AGG | - | chr6.4:548908-548927 | MS.gene74417:intron | 50.0% |
| ACAACGGCAGCAGCCTCATA+CGG | + | chr6.4:549427-549446 | None:intergenic | 55.0% | |
| ACTGTACCAGAGAAGGGCTG+AGG | + | chr6.4:549310-549329 | None:intergenic | 55.0% | |
| AGTTGCTTCGGACTTAGCCC+TGG | + | chr6.4:547946-547965 | None:intergenic | 55.0% | |
| GTTGAGGCATGAGCAAAGGG+GGG | + | chr6.4:549349-549368 | None:intergenic | 55.0% | |
| TGTGTTCCTCAGCCCTTCTC+TGG | - | chr6.4:549301-549320 | MS.gene74417:intron | 55.0% | |
| TTGAGGCATGAGCAAAGGGG+GGG | + | chr6.4:549348-549367 | None:intergenic | 55.0% | |
| ! | CGTTCATCGCCACTCTGGAA+TGG | - | chr6.4:547291-547310 | MS.gene74417:intron | 55.0% |
| ! | TGTGCAGAGGTGCACGTAAC+TGG | + | chr6.4:548568-548587 | None:intergenic | 55.0% |
| !! | CAAGGAACTTGCTGATCGCG+TGG | - | chr6.4:548542-548561 | MS.gene74417:intron | 55.0% |
| !! | GAGGCTGCTGCCGTTGTTTT+AGG | - | chr6.4:549430-549449 | MS.gene74417:CDS | 55.0% |
| !!! | CTGCTGCCGTTGTTTTAGGG+AGG | - | chr6.4:549434-549453 | MS.gene74417:CDS | 55.0% |
| CAACGGCAGCAGCCTCATAC+GGG | + | chr6.4:549426-549445 | None:intergenic | 60.0% | |
| GCGGATATGACCTGCCGACA+AGG | - | chr6.4:550026-550045 | MS.gene74417:intron | 60.0% | |
| GCTGCTTAGTGCATTGCCCC+AGG | + | chr6.4:547714-547733 | None:intergenic | 60.0% | |
| TGCAATCGGGAAGGGCAGAC+AGG | - | chr6.4:548917-548936 | MS.gene74417:intron | 60.0% | |
| CACGCCGTTCATCGCCACTC+TGG | - | chr6.4:547286-547305 | MS.gene74417:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 546090 | 550633 | 546090 | ID=MS.gene74417 |
| chr6.4 | mRNA | 546090 | 550633 | 546090 | ID=MS.gene74417.t1;Parent=MS.gene74417 |
| chr6.4 | exon | 550530 | 550633 | 550530 | ID=MS.gene74417.t1.exon1;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 550530 | 550633 | 550530 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 549592 | 549631 | 549592 | ID=MS.gene74417.t1.exon2;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 549592 | 549631 | 549592 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 549411 | 549494 | 549411 | ID=MS.gene74417.t1.exon3;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 549411 | 549494 | 549411 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 548747 | 548820 | 548747 | ID=MS.gene74417.t1.exon4;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 548747 | 548820 | 548747 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 548119 | 548205 | 548119 | ID=MS.gene74417.t1.exon5;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 548119 | 548205 | 548119 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 547943 | 548027 | 547943 | ID=MS.gene74417.t1.exon6;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 547943 | 548027 | 547943 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 547774 | 547820 | 547774 | ID=MS.gene74417.t1.exon7;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 547774 | 547820 | 547774 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 546654 | 546719 | 546654 | ID=MS.gene74417.t1.exon8;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 546654 | 546719 | 546654 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 546465 | 546555 | 546465 | ID=MS.gene74417.t1.exon9;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 546465 | 546555 | 546465 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| chr6.4 | exon | 546090 | 546161 | 546090 | ID=MS.gene74417.t1.exon10;Parent=MS.gene74417.t1 |
| chr6.4 | CDS | 546090 | 546161 | 546090 | ID=cds.MS.gene74417.t1;Parent=MS.gene74417.t1 |
| Gene Sequence |
| Protein sequence |
