Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29473.t1 | XP_012574544.1 | 99.1 | 223 | 2 | 0 | 1 | 223 | 1 | 223 | 7.60E-122 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29473.t1 | O82531 | 90.6 | 223 | 21 | 0 | 1 | 223 | 1 | 223 | 3.8e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29473.t1 | A0A1S3EGP6 | 99.1 | 223 | 2 | 0 | 1 | 223 | 1 | 223 | 5.5e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29473.t1 | MTR_5g079740 | 98.655 | 223 | 3 | 0 | 1 | 223 | 1 | 223 | 1.14e-168 | 463 |
| MS.gene29473.t1 | MTR_2g098010 | 98.206 | 223 | 4 | 0 | 1 | 223 | 1 | 223 | 7.23e-168 | 461 |
| MS.gene29473.t1 | MTR_5g079740 | 99.398 | 166 | 1 | 0 | 58 | 223 | 1 | 166 | 1.70e-122 | 344 |
| MS.gene29473.t1 | MTR_7g088490 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 1.11e-17 | 78.6 |
| MS.gene29473.t1 | MTR_4g087680 | 32.283 | 127 | 86 | 0 | 11 | 137 | 4 | 130 | 2.15e-16 | 75.1 |
| MS.gene29473.t1 | MTR_3g109210 | 27.273 | 209 | 126 | 4 | 15 | 217 | 13 | 201 | 9.69e-16 | 73.9 |
| MS.gene29473.t1 | MTR_4g023520 | 94.118 | 34 | 2 | 0 | 58 | 91 | 1 | 34 | 5.79e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29473.t1 | AT3G60820 | 86.547 | 223 | 30 | 0 | 1 | 223 | 1 | 223 | 6.31e-149 | 413 |
| MS.gene29473.t1 | AT3G60820 | 86.547 | 223 | 30 | 0 | 1 | 223 | 1 | 223 | 6.31e-149 | 413 |
| MS.gene29473.t1 | AT3G60820 | 85.650 | 223 | 32 | 0 | 1 | 223 | 1 | 223 | 6.11e-147 | 408 |
| MS.gene29473.t1 | AT1G21720 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 4.66e-18 | 79.3 |
| MS.gene29473.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 3.70e-17 | 77.0 |
| MS.gene29473.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 3.70e-17 | 77.0 |
| MS.gene29473.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 4.61e-13 | 66.6 |
| MS.gene29473.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 4.61e-13 | 66.6 |
| MS.gene29473.t1 | AT4G31300 | 24.878 | 205 | 137 | 3 | 15 | 217 | 12 | 201 | 5.71e-12 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTATTCTTTCAATGTTT+TGG | 0.153956 | 5.3:-64460612 | MS.gene29473:CDS |
| AAATGTGTTATGGCTTCTTC+TGG | 0.301604 | 5.3:-64462666 | MS.gene29473:CDS |
| AGATCTTGTGTTGCAATTGC+TGG | 0.324649 | 5.3:-64462900 | MS.gene29473:CDS |
| AGCGTACAAGTGTGAGATTT+TGG | 0.327605 | 5.3:+64462806 | None:intergenic |
| GATGAATACCACTGGCATTA+AGG | 0.331789 | 5.3:+64459559 | None:intergenic |
| GGATATAGCTCTCAAGGTTC+TGG | 0.342345 | 5.3:-64460439 | MS.gene29473:CDS |
| AGACCAATTAGCATGTTCTT+TGG | 0.352862 | 5.3:+64463038 | None:intergenic |
| TGACCAAAGAACATGCTAAT+TGG | 0.370316 | 5.3:-64463041 | MS.gene29473:CDS |
| AAAACATTGAAAGAATAATA+AGG | 0.377276 | 5.3:+64460614 | None:intergenic |
| TGAAACAGAAGCAGTTGATT+TGG | 0.385508 | 5.3:-64459931 | MS.gene29473:CDS |
| GAAAGTAACTGAGCCATTGC+AGG | 0.408497 | 5.3:+64460665 | None:intergenic |
| CGCCGCGATAACACAGTAAT+CGG | 0.412401 | 5.3:+64462875 | None:intergenic |
| TACCCTCCATTGTTGTCATA+TGG | 0.417558 | 5.3:+64463015 | None:intergenic |
| GCTATATCCCACCCTTTCAT+AGG | 0.421527 | 5.3:+64460453 | None:intergenic |
| ACTTCACCTGTGCAGGTAAG+AGG | 0.429182 | 5.3:+64460362 | None:intergenic |
| TTTAGTTGGTTATCAAGAAA+AGG | 0.431130 | 5.3:+64460400 | None:intergenic |
| CAAACACACTTTATTACAAA+CGG | 0.446704 | 5.3:-64460643 | MS.gene29473:CDS |
| CAGAGCTAAGAAATGTGTTA+TGG | 0.455305 | 5.3:-64462676 | MS.gene29473:CDS |
| TGGTATTCATCGTGAATTCA+TGG | 0.458322 | 5.3:-64459547 | MS.gene29473:CDS |
| GTGGACTGGGAGACTTTAGT+TGG | 0.471755 | 5.3:+64460386 | None:intergenic |
| TTTACGAACTTCACCTGTGC+AGG | 0.482932 | 5.3:+64460355 | None:intergenic |
| ATCGTGAATTCATGGACCTT+AGG | 0.499460 | 5.3:-64459539 | MS.gene29473:CDS |
| ATTAGCATGTTCTTTGGTCA+TGG | 0.511812 | 5.3:+64463044 | None:intergenic |
| ACGAGTGAGGATGTTGTAAC+CGG | 0.515362 | 5.3:+64462836 | None:intergenic |
| GCAGGTAAGAGGAGTGGACT+GGG | 0.519527 | 5.3:+64460373 | None:intergenic |
| GCAAATGAGCTGCCCTGCAA+TGG | 0.526195 | 5.3:-64460678 | MS.gene29473:CDS |
| TGCAGGTAAGAGGAGTGGAC+TGG | 0.534103 | 5.3:+64460372 | None:intergenic |
| ATGCTGTTGGTTCCTATGAA+AGG | 0.538907 | 5.3:-64460465 | MS.gene29473:CDS |
| TCCACTCCTCTTACCTGCAC+AGG | 0.541323 | 5.3:-64460368 | MS.gene29473:intron |
| GTCTTCACATATGATGCTGT+TGG | 0.551042 | 5.3:-64460478 | MS.gene29473:CDS |
| TTGGGCGGCCTCGACAGTGA+AGG | 0.558929 | 5.3:-64460593 | MS.gene29473:intron |
| TGATGTCAAGGCTTTGCAGA+AGG | 0.566876 | 5.3:-64462634 | MS.gene29473:CDS |
| AGGGTGGGATATAGCTCTCA+AGG | 0.576238 | 5.3:-64460445 | MS.gene29473:CDS |
| AAAAGCATCAGTCTTTCCTA+AGG | 0.578578 | 5.3:+64459523 | None:intergenic |
| AAAGTAACTGAGCCATTGCA+GGG | 0.583094 | 5.3:+64460666 | None:intergenic |
| CTCCATATGACAACAATGGA+GGG | 0.588306 | 5.3:-64463017 | MS.gene29473:intron |
| ACCTGTGCAGGTAAGAGGAG+TGG | 0.590257 | 5.3:+64460367 | None:intergenic |
| ACTGCTTCTGTTTCAGACAG+TGG | 0.593751 | 5.3:+64459939 | None:intergenic |
| TGCTGTTGGTTCCTATGAAA+GGG | 0.597669 | 5.3:-64460464 | MS.gene29473:CDS |
| AAGAAAAGGCATAATGAGTG+TGG | 0.597780 | 5.3:+64460414 | None:intergenic |
| GAATTCACGATGAATACCAC+TGG | 0.608804 | 5.3:+64459551 | None:intergenic |
| GTGTTATCGCGGCGGATACG+AGG | 0.627619 | 5.3:-64462866 | MS.gene29473:CDS |
| ATTGTCATCCTTAATGCCAG+TGG | 0.628525 | 5.3:-64459567 | MS.gene29473:CDS |
| TCTCCATATGACAACAATGG+AGG | 0.635572 | 5.3:-64463018 | MS.gene29473:CDS |
| AGTGAGGATGTTGTAACCGG+TGG | 0.639435 | 5.3:+64462839 | None:intergenic |
| TGGTCTCCATATGACAACAA+TGG | 0.646174 | 5.3:-64463021 | MS.gene29473:CDS |
| TTCAACCTGAATTAGGAAAG+GGG | 0.647601 | 5.3:-64460504 | MS.gene29473:intron |
| TGTTGGTTCCTATGAAAGGG+TGG | 0.648410 | 5.3:-64460461 | MS.gene29473:CDS |
| ATAGTGCACCTTCACTGTCG+AGG | 0.654158 | 5.3:+64460585 | None:intergenic |
| GTTGGTTCCTATGAAAGGGT+GGG | 0.677680 | 5.3:-64460460 | MS.gene29473:CDS |
| GCGGATACGAGGATGTCCAC+CGG | 0.684403 | 5.3:-64462855 | MS.gene29473:CDS |
| ATCCGATTACTGTGTTATCG+CGG | 0.711087 | 5.3:-64462877 | MS.gene29473:CDS |
| CGATTACTGTGTTATCGCGG+CGG | 0.718453 | 5.3:-64462874 | MS.gene29473:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATAATATTACTTA+GGG | + | chr5.3:64460256-64460275 | None:intergenic | 10.0% |
| !! | TAATATTTCCAAAAAATAAA+AGG | + | chr5.3:64461393-64461412 | None:intergenic | 10.0% |
| !!! | AATAAAATAATAATCACTTT+TGG | + | chr5.3:64462523-64462542 | None:intergenic | 10.0% |
| !! | AAAACATTGAAAGAATAATA+AGG | + | chr5.3:64461961-64461980 | None:intergenic | 15.0% |
| !! | AAAATGACATTTATGTAAAA+GGG | + | chr5.3:64462924-64462943 | None:intergenic | 15.0% |
| !! | AATCTAAATAGTATTACATA+AGG | + | chr5.3:64460353-64460372 | None:intergenic | 15.0% |
| !! | ATTAAAATATGATTTATTGC+AGG | - | chr5.3:64462599-64462618 | MS.gene29473:intron | 15.0% |
| !! | CAATCTAAATAATATTACTT+AGG | + | chr5.3:64460257-64460276 | None:intergenic | 15.0% |
| !! | TAAAATGACATTTATGTAAA+AGG | + | chr5.3:64462925-64462944 | None:intergenic | 15.0% |
| !! | TATAGTTAAACTTACTTATA+GGG | + | chr5.3:64461156-64461175 | None:intergenic | 15.0% |
| !! | TTAAAAAAATTAGAATCTGA+AGG | + | chr5.3:64462483-64462502 | None:intergenic | 15.0% |
| !! | TTATAGGGTTATTATTATTA+AGG | + | chr5.3:64461141-64461160 | None:intergenic | 15.0% |
| !!! | TAAATCATATTTTAATGTAG+AGG | + | chr5.3:64462595-64462614 | None:intergenic | 15.0% |
| !!! | TAATTTAGAGATACTTTTTT+TGG | - | chr5.3:64462315-64462334 | MS.gene29473:intron | 15.0% |
| !!! | TATTATTCTTTCAATGTTTT+GGG | - | chr5.3:64461961-64461980 | MS.gene29473:intron | 15.0% |
| !!! | TTATTATTCTTTCAATGTTT+TGG | - | chr5.3:64461960-64461979 | MS.gene29473:intron | 15.0% |
| !! | AGAATCAATATAATGTCATA+CGG | + | chr5.3:64461843-64461862 | None:intergenic | 20.0% |
| !! | ATCTAACAACATAATTAATC+AGG | + | chr5.3:64461524-64461543 | None:intergenic | 20.0% |
| !! | GTATAGTTAAACTTACTTAT+AGG | + | chr5.3:64461157-64461176 | None:intergenic | 20.0% |
| !! | TGAAATATTTGATGCTTTAA+GGG | - | chr5.3:64462250-64462269 | MS.gene29473:intron | 20.0% |
| !! | TTCTGATAAGAAACTATTTA+TGG | - | chr5.3:64461095-64461114 | MS.gene29473:intron | 20.0% |
| !! | TTGAAATATTTGATGCTTTA+AGG | - | chr5.3:64462249-64462268 | MS.gene29473:intron | 20.0% |
| !!! | AAGCTAGAATTTGTAATTTT+TGG | + | chr5.3:64460563-64460582 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTGGAGATTTTTA+AGG | - | chr5.3:64462327-64462346 | MS.gene29473:intron | 20.0% |
| !!! | CATAAATGTCATTTTACATT+AGG | - | chr5.3:64462929-64462948 | MS.gene29473:intron | 20.0% |
| !!! | CTTTAAATTAGAATCAGTTT+TGG | - | chr5.3:64460580-64460599 | MS.gene29473:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCTATAT+TGG | - | chr5.3:64460129-64460148 | MS.gene29473:intron | 20.0% |
| !!! | TCTGTATACCTTTTATTTTT+TGG | - | chr5.3:64461382-64461401 | MS.gene29473:intron | 20.0% |
| !!! | TGATTATGTAAAGTTATTTC+TGG | - | chr5.3:64460441-64460460 | MS.gene29473:CDS | 20.0% |
| !!! | TTAGAAATTTAGTGAGATTT+TGG | - | chr5.3:64461549-64461568 | MS.gene29473:intron | 20.0% |
| !!! | TTTAGATTGCACATATTTTT+AGG | - | chr5.3:64460365-64460384 | MS.gene29473:intron | 20.0% |
| ! | AAACCAATGTTGTCAAATAT+CGG | - | chr5.3:64460693-64460712 | MS.gene29473:CDS | 25.0% |
| ! | AGTATTCAACATTCTATGTT+TGG | + | chr5.3:64460874-64460893 | None:intergenic | 25.0% |
| ! | CAAACACACTTTATTACAAA+CGG | - | chr5.3:64461929-64461948 | MS.gene29473:intron | 25.0% |
| ! | CTCGTTTAATAAAGATTGAA+CGG | + | chr5.3:64462777-64462796 | None:intergenic | 25.0% |
| ! | CTGTTATAGTTGAACTTATA+AGG | + | chr5.3:64461219-64461238 | None:intergenic | 25.0% |
| ! | CTTATAAGGCTATCATATTA+AGG | + | chr5.3:64461205-64461224 | None:intergenic | 25.0% |
| ! | GGAACATTACAATAATAGAA+AGG | + | chr5.3:64462018-64462037 | None:intergenic | 25.0% |
| ! | GTAACTTCTATATGGAAAAA+AGG | + | chr5.3:64461317-64461336 | None:intergenic | 25.0% |
| ! | GTATCTGAATTAGTTCAATA+TGG | - | chr5.3:64461429-64461448 | MS.gene29473:intron | 25.0% |
| ! | TAACCAAAAAAGATATCCAA+AGG | + | chr5.3:64460921-64460940 | None:intergenic | 25.0% |
| ! | TAGAGAGCTTAAAATCAATT+TGG | + | chr5.3:64460978-64460997 | None:intergenic | 25.0% |
| ! | TTCAACTATAACAGAGTTAT+TGG | - | chr5.3:64461225-64461244 | MS.gene29473:intron | 25.0% |
| ! | TTTAGTTGGTTATCAAGAAA+AGG | + | chr5.3:64462175-64462194 | None:intergenic | 25.0% |
| !! | AAAATAAAAGGTATACAGAC+TGG | + | chr5.3:64461381-64461400 | None:intergenic | 25.0% |
| !! | AAATAAAAGGTATACAGACT+GGG | + | chr5.3:64461380-64461399 | None:intergenic | 25.0% |
| !! | AACATAAAGTGATTTGTGTT+TGG | - | chr5.3:64460478-64460497 | MS.gene29473:CDS | 25.0% |
| !! | ACAGAGTTATTGGATTATTT+TGG | - | chr5.3:64461235-64461254 | MS.gene29473:intron | 25.0% |
| !! | ATATCTGAAACTCAAAACAA+AGG | + | chr5.3:64461076-64461095 | None:intergenic | 25.0% |
| !! | GACAAATGTTTAACTTACTT+TGG | - | chr5.3:64462951-64462970 | MS.gene29473:intron | 25.0% |
| !! | TAACTACTTGCTTATGTTTT+GGG | + | chr5.3:64460304-64460323 | None:intergenic | 25.0% |
| !! | TTAACTACTTGCTTATGTTT+TGG | + | chr5.3:64460305-64460324 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAACACTGTT+TGG | + | chr5.3:64460221-64460240 | None:intergenic | 25.0% |
| !!! | ATTCCTTTGGATATCTTTTT+TGG | - | chr5.3:64460915-64460934 | MS.gene29473:intron | 25.0% |
| !!! | ATTGATTTGATTATACTGGT+TGG | - | chr5.3:64461460-64461479 | MS.gene29473:intron | 25.0% |
| !!! | CTTGATTGATTTGATTATAC+TGG | - | chr5.3:64461456-64461475 | MS.gene29473:intron | 25.0% |
| !!! | TAAGTTTTGTAACACTGTTT+GGG | + | chr5.3:64460220-64460239 | None:intergenic | 25.0% |
| !!! | TTTGGATGTATGTTTTTACA+GGG | - | chr5.3:64462969-64462988 | MS.gene29473:intron | 25.0% |
| AAACTATTTATGGACTCTCA+CGG | - | chr5.3:64461105-64461124 | MS.gene29473:intron | 30.0% | |
| AAATTATTCTATCCCTTCAG+TGG | - | chr5.3:64461584-64461603 | MS.gene29473:intron | 30.0% | |
| AATGAGAAGTTGTTCTTAGT+AGG | + | chr5.3:64462434-64462453 | None:intergenic | 30.0% | |
| ACAAAACTTATTCCAGTAAC+AGG | - | chr5.3:64460230-64460249 | MS.gene29473:intron | 30.0% | |
| ACATTAGTGTTGTCAAATAG+CGG | - | chr5.3:64461660-64461679 | MS.gene29473:intron | 30.0% | |
| ACCAAATTGTTGTCAAATAG+TGG | - | chr5.3:64461740-64461759 | MS.gene29473:intron | 30.0% | |
| AGAAAAAAGATGTAGCAAAC+AGG | - | chr5.3:64462546-64462565 | MS.gene29473:intron | 30.0% | |
| ATAGAATGTTGAATACTGCT+TGG | - | chr5.3:64460877-64460896 | MS.gene29473:intron | 30.0% | |
| CATTCATCCTTCACAAAAAT+TGG | + | chr5.3:64460762-64460781 | None:intergenic | 30.0% | |
| CGTTCAATCTTTATTAAACG+AGG | - | chr5.3:64462775-64462794 | MS.gene29473:intron | 30.0% | |
| GGCTATCATATTAAGGATTT+CGG | + | chr5.3:64461198-64461217 | None:intergenic | 30.0% | |
| GGTATACAATTATACGTAGA+GGG | + | chr5.3:64461339-64461358 | None:intergenic | 30.0% | |
| TAGATTCTAGACGTATAGAA+TGG | + | chr5.3:64460648-64460667 | None:intergenic | 30.0% | |
| TCAAATAAGTGATTCCAAAC+AGG | - | chr5.3:64460327-64460346 | MS.gene29473:intron | 30.0% | |
| TCAAGGTAAGATTAGAACAA+GGG | + | chr5.3:64461612-64461631 | None:intergenic | 30.0% | |
| TGTTAGTTAAGCACAGTTTA+GGG | + | chr5.3:64462572-64462591 | None:intergenic | 30.0% | |
| TTAAGTTAGTGAGTTAGGAA+GGG | - | chr5.3:64460938-64460957 | MS.gene29473:intron | 30.0% | |
| TTAATAAAGATTGAACGGTC+TGG | + | chr5.3:64462772-64462791 | None:intergenic | 30.0% | |
| TTTGGTTAAGTTAGTGAGTT+AGG | - | chr5.3:64460933-64460952 | MS.gene29473:intron | 30.0% | |
| ! | AAAGGAACGTTTAAAACTAG+AGG | + | chr5.3:64461058-64461077 | None:intergenic | 30.0% |
| ! | AATAAAAGGTATACAGACTG+GGG | + | chr5.3:64461379-64461398 | None:intergenic | 30.0% |
| ! | ATTCTATGTTTGGTTCAATG+CGG | + | chr5.3:64460864-64460883 | None:intergenic | 30.0% |
| ! | GATATTTGACAACATTGGTT+TGG | + | chr5.3:64460694-64460713 | None:intergenic | 30.0% |
| ! | GGGGTTTTCTTTACAATTTT+GGG | + | chr5.3:64461360-64461379 | None:intergenic | 30.0% |
| ! | TGAGTTGAATAGTACATTCA+AGG | - | chr5.3:64460518-64460537 | MS.gene29473:intron | 30.0% |
| ! | TGGGGTTTTCTTTACAATTT+TGG | + | chr5.3:64461361-64461380 | None:intergenic | 30.0% |
| ! | TTATTAAACGAGGCACATTT+TGG | - | chr5.3:64462785-64462804 | MS.gene29473:intron | 30.0% |
| !! | AGAATGGATTTTGACATGTT+TGG | + | chr5.3:64460632-64460651 | None:intergenic | 30.0% |
| !! | CTTTGGATGTATGTTTTTAC+AGG | - | chr5.3:64462968-64462987 | MS.gene29473:intron | 30.0% |
| !! | TATGCTGTTGTTGTTGTTTA+AGG | - | chr5.3:64459854-64459873 | MS.gene29473:intron | 30.0% |
| !! | TATTCTTTCAATGTTTTGGG+CGG | - | chr5.3:64461964-64461983 | MS.gene29473:intron | 30.0% |
| !! | TATTTTTGCTCTTCCAAAAG+TGG | - | chr5.3:64460666-64460685 | MS.gene29473:CDS | 30.0% |
| !! | TTGGATGTATGTTTTTACAG+GGG | - | chr5.3:64462970-64462989 | MS.gene29473:intron | 30.0% |
| !!! | CACATATTTTTAGGATGGAT+TGG | - | chr5.3:64460374-64460393 | MS.gene29473:CDS | 30.0% |
| !!! | GATTGCACATATTTTTAGGA+TGG | - | chr5.3:64460369-64460388 | MS.gene29473:CDS | 30.0% |
| AAATGTGTTATGGCTTCTTC+TGG | - | chr5.3:64459906-64459925 | MS.gene29473:CDS | 35.0% | |
| ACTATAAGACTGTAGCATAG+TGG | - | chr5.3:64461773-64461792 | MS.gene29473:intron | 35.0% | |
| ACTTCAACCTGAATTAGGAA+AGG | - | chr5.3:64462066-64462085 | MS.gene29473:intron | 35.0% | |
| AGACCAATTAGCATGTTCTT+TGG | + | chr5.3:64459537-64459556 | None:intergenic | 35.0% | |
| AGTATTACATAAGGCCTGTT+TGG | + | chr5.3:64460344-64460363 | None:intergenic | 35.0% | |
| CACTATTTGAGCTTAACTAC+TGG | + | chr5.3:64460280-64460299 | None:intergenic | 35.0% | |
| CAGAGCTAAGAAATGTGTTA+TGG | - | chr5.3:64459896-64459915 | MS.gene29473:CDS | 35.0% | |
| CATAGAAACACTGCAAAAGA+AGG | + | chr5.3:64461265-64461284 | None:intergenic | 35.0% | |
| CGAGTCAGCAAATACAAAAA+TGG | + | chr5.3:64462039-64462058 | None:intergenic | 35.0% | |
| CTTCAACCTGAATTAGGAAA+GGG | - | chr5.3:64462067-64462086 | MS.gene29473:intron | 35.0% | |
| CTTCTACTTCAACCTGAATT+AGG | - | chr5.3:64462061-64462080 | MS.gene29473:intron | 35.0% | |
| GAGCTAAAAATCCAACATAC+CGG | + | chr5.3:64460789-64460808 | None:intergenic | 35.0% | |
| GCCACTATTTGACAACAATT+TGG | + | chr5.3:64461744-64461763 | None:intergenic | 35.0% | |
| GGGTATACAATTATACGTAG+AGG | + | chr5.3:64461340-64461359 | None:intergenic | 35.0% | |
| GTACTTCGACTTTGCAAAAT+AGG | + | chr5.3:64462826-64462845 | None:intergenic | 35.0% | |
| GTCAAGGTAAGATTAGAACA+AGG | + | chr5.3:64461613-64461632 | None:intergenic | 35.0% | |
| GTGTGAATGCAGAGTTATTT+CGG | - | chr5.3:64462882-64462901 | MS.gene29473:CDS | 35.0% | |
| GTGTTAGTTAAGCACAGTTT+AGG | + | chr5.3:64462573-64462592 | None:intergenic | 35.0% | |
| GTTAAGTTAGTGAGTTAGGA+AGG | - | chr5.3:64460937-64460956 | MS.gene29473:intron | 35.0% | |
| TCCTTCACAAAAATTGGTCA+TGG | + | chr5.3:64460756-64460775 | None:intergenic | 35.0% | |
| TCGTAGATTGCAGAAAATAG+CGG | + | chr5.3:64461811-64461830 | None:intergenic | 35.0% | |
| TGAAACAGAAGCAGTTGATT+TGG | - | chr5.3:64462641-64462660 | MS.gene29473:CDS | 35.0% | |
| TGACAAAAAATTGAAGCCTC+TGG | - | chr5.3:64461629-64461648 | MS.gene29473:intron | 35.0% | |
| TGACCAAAGAACATGCTAAT+TGG | - | chr5.3:64459531-64459550 | MS.gene29473:CDS | 35.0% | |
| TGGAAAAAAGGTGAAGAGTT+TGG | + | chr5.3:64461305-64461324 | None:intergenic | 35.0% | |
| TGGTATTCATCGTGAATTCA+TGG | - | chr5.3:64463025-64463044 | MS.gene29473:CDS | 35.0% | |
| TTCAACCTGAATTAGGAAAG+GGG | - | chr5.3:64462068-64462087 | MS.gene29473:intron | 35.0% | |
| ! | AAGAAAAGGCATAATGAGTG+TGG | + | chr5.3:64462161-64462180 | None:intergenic | 35.0% |
| !! | ACAGTGTCACTTATGATACT+AGG | + | chr5.3:64459805-64459824 | None:intergenic | 35.0% |
| !! | TATGTTTTTACAGGGGGATA+AGG | - | chr5.3:64462977-64462996 | MS.gene29473:intron | 35.0% |
| !! | TGGATGTATGTTTTTACAGG+GGG | - | chr5.3:64462971-64462990 | MS.gene29473:intron | 35.0% |
| !!! | GAGGCTTCAATTTTTTGTCA+AGG | + | chr5.3:64461629-64461648 | None:intergenic | 35.0% |
| AAAGTAACTGAGCCATTGCA+GGG | + | chr5.3:64461909-64461928 | None:intergenic | 40.0% | |
| AAGTACGAGTCCCTCTTATA+AGG | - | chr5.3:64462840-64462859 | MS.gene29473:CDS | 40.0% | |
| AGATCTTGTGTTGCAATTGC+TGG | - | chr5.3:64459672-64459691 | MS.gene29473:intron | 40.0% | |
| AGGAGTCATCAACATTCCTT+TGG | - | chr5.3:64460902-64460921 | MS.gene29473:intron | 40.0% | |
| ATATGACAACAATGGAGGGT+AGG | - | chr5.3:64459559-64459578 | MS.gene29473:CDS | 40.0% | |
| ATCATGCATTCACGCTATTG+CGG | - | chr5.3:64462744-64462763 | MS.gene29473:intron | 40.0% | |
| ATCCGATTACTGTGTTATCG+CGG | - | chr5.3:64459695-64459714 | MS.gene29473:intron | 40.0% | |
| ATCGTGAATTCATGGACCTT+AGG | - | chr5.3:64463033-64463052 | MS.gene29473:CDS | 40.0% | |
| ATGTTGAATACTGCTTGGCA+AGG | - | chr5.3:64460882-64460901 | MS.gene29473:intron | 40.0% | |
| ATGTTGTCAAATATCGGCCA+TGG | - | chr5.3:64460699-64460718 | MS.gene29473:CDS | 40.0% | |
| ATTGTCATCCTTAATGCCAG+TGG | - | chr5.3:64463005-64463024 | MS.gene29473:intron | 40.0% | |
| ATTTCAGCCGCCTTATAAGA+GGG | + | chr5.3:64462853-64462872 | None:intergenic | 40.0% | |
| CGTAGAGGGTAACTTCTATA+TGG | + | chr5.3:64461325-64461344 | None:intergenic | 40.0% | |
| CTCCATATGACAACAATGGA+GGG | - | chr5.3:64459555-64459574 | MS.gene29473:CDS | 40.0% | |
| GAATTCACGATGAATACCAC+TGG | + | chr5.3:64463024-64463043 | None:intergenic | 40.0% | |
| GATGAATACCACTGGCATTA+AGG | + | chr5.3:64463016-64463035 | None:intergenic | 40.0% | |
| GGTAATCAACATTGTATGCG+TGG | + | chr5.3:64460843-64460862 | None:intergenic | 40.0% | |
| GTCTTCACATATGATGCTGT+TGG | - | chr5.3:64462094-64462113 | MS.gene29473:intron | 40.0% | |
| TACCCTCCATTGTTGTCATA+TGG | + | chr5.3:64459560-64459579 | None:intergenic | 40.0% | |
| TATGACAACAATGGAGGGTA+GGG | - | chr5.3:64459560-64459579 | MS.gene29473:CDS | 40.0% | |
| TATTACTTAGGGCCTGTTAC+TGG | + | chr5.3:64460245-64460264 | None:intergenic | 40.0% | |
| TCTCCATATGACAACAATGG+AGG | - | chr5.3:64459554-64459573 | MS.gene29473:CDS | 40.0% | |
| TGGCCGATATTTGACAACAT+TGG | + | chr5.3:64460699-64460718 | None:intergenic | 40.0% | |
| TGGTCTCCATATGACAACAA+TGG | - | chr5.3:64459551-64459570 | MS.gene29473:CDS | 40.0% | |
| TGTAAAAGGGCCCAAAGTTT+CGG | + | chr5.3:64462911-64462930 | None:intergenic | 40.0% | |
| ! | ACTAATGTCATTTCAGCCAG+AGG | + | chr5.3:64461648-64461667 | None:intergenic | 40.0% |
| ! | AGCGTACAAGTGTGAGATTT+TGG | + | chr5.3:64459769-64459788 | None:intergenic | 40.0% |
| ! | GCCATGACCAATTTTTGTGA+AGG | - | chr5.3:64460752-64460771 | MS.gene29473:intron | 40.0% |
| !! | ATGCTGTTGGTTCCTATGAA+AGG | - | chr5.3:64462107-64462126 | MS.gene29473:intron | 40.0% |
| !! | TGCTGTTGGTTCCTATGAAA+GGG | - | chr5.3:64462108-64462127 | MS.gene29473:intron | 40.0% |
| !! | TGGTTTTCAAGCTGATGTCA+AGG | - | chr5.3:64459926-64459945 | MS.gene29473:CDS | 40.0% |
| !!! | CATTGGTTTGGTTCCACTTT+TGG | + | chr5.3:64460682-64460701 | None:intergenic | 40.0% |
| !!! | TTGGTGTGAGTTTGGTTTTG+CGG | - | chr5.3:64460393-64460412 | MS.gene29473:CDS | 40.0% |
| !!! | TTTTGGAGTAATCACGAGTG+AGG | + | chr5.3:64459752-64459771 | None:intergenic | 40.0% |
| ACACACCCCTTTCCTAATTC+AGG | + | chr5.3:64462076-64462095 | None:intergenic | 45.0% | |
| ACGAGTGAGGATGTTGTAAC+CGG | + | chr5.3:64459739-64459758 | None:intergenic | 45.0% | |
| ACTGCTTCTGTTTCAGACAG+TGG | + | chr5.3:64462636-64462655 | None:intergenic | 45.0% | |
| AGAACAAGGGAACCACTGAA+GGG | + | chr5.3:64461599-64461618 | None:intergenic | 45.0% | |
| ATATCGGCCATGGAGGATAT+CGG | - | chr5.3:64460709-64460728 | MS.gene29473:intron | 45.0% | |
| ATGAATGTCAGCCGGTATGT+TGG | - | chr5.3:64460775-64460794 | MS.gene29473:intron | 45.0% | |
| ATGTTGTCAATGGCAGACCA+TGG | + | chr5.3:64460816-64460835 | None:intergenic | 45.0% | |
| ATTTCGGCTGCCGAAACTTT+GGG | - | chr5.3:64462898-64462917 | MS.gene29473:CDS | 45.0% | |
| GAAAGTAACTGAGCCATTGC+AGG | + | chr5.3:64461910-64461929 | None:intergenic | 45.0% | |
| GATTTCAGCCGCCTTATAAG+AGG | + | chr5.3:64462854-64462873 | None:intergenic | 45.0% | |
| GCGTGGTTCAATGTTGTCAA+TGG | + | chr5.3:64460826-64460845 | None:intergenic | 45.0% | |
| GCTATATCCCACCCTTTCAT+AGG | + | chr5.3:64462122-64462141 | None:intergenic | 45.0% | |
| GGATATAGCTCTCAAGGTTC+TGG | - | chr5.3:64462133-64462152 | MS.gene29473:intron | 45.0% | |
| GTTAGGAAGGGAACATTGCT+TGG | - | chr5.3:64460950-64460969 | MS.gene29473:intron | 45.0% | |
| TACGAGTCCCTCTTATAAGG+CGG | - | chr5.3:64462843-64462862 | MS.gene29473:CDS | 45.0% | |
| TAGAACAAGGGAACCACTGA+AGG | + | chr5.3:64461600-64461619 | None:intergenic | 45.0% | |
| TAGCGTGAATGCATGATGAC+AGG | + | chr5.3:64462741-64462760 | None:intergenic | 45.0% | |
| TATTTCGGCTGCCGAAACTT+TGG | - | chr5.3:64462897-64462916 | MS.gene29473:CDS | 45.0% | |
| TGATGTCAAGGCTTTGCAGA+AGG | - | chr5.3:64459938-64459957 | MS.gene29473:CDS | 45.0% | |
| TGTGAAGGATGAATGTCAGC+CGG | - | chr5.3:64460767-64460786 | MS.gene29473:intron | 45.0% | |
| TGTTGTCAATGGCAGACCAT+GGG | + | chr5.3:64460815-64460834 | None:intergenic | 45.0% | |
| TTGTCAAATATCGGCCATGG+AGG | - | chr5.3:64460702-64460721 | MS.gene29473:CDS | 45.0% | |
| TTTACGAACTTCACCTGTGC+AGG | + | chr5.3:64462220-64462239 | None:intergenic | 45.0% | |
| ! | GTTGGTTCCTATGAAAGGGT+GGG | - | chr5.3:64462112-64462131 | MS.gene29473:intron | 45.0% |
| !! | AGGATGGATTGGTGTGAGTT+TGG | - | chr5.3:64460385-64460404 | MS.gene29473:CDS | 45.0% |
| !! | TGCAGAAGGTTTTGTCTGCT+AGG | - | chr5.3:64459952-64459971 | MS.gene29473:CDS | 45.0% |
| !! | TGTTGGTTCCTATGAAAGGG+TGG | - | chr5.3:64462111-64462130 | MS.gene29473:intron | 45.0% |
| !!! | TTTTTCAATTATATATTTTT+TGG | - | chr5.3:64459619-64459638 | MS.gene29473:intron | 5.0% |
| ACTTCACCTGTGCAGGTAAG+AGG | + | chr5.3:64462213-64462232 | None:intergenic | 50.0% | |
| AGGGTGGGATATAGCTCTCA+AGG | - | chr5.3:64462127-64462146 | MS.gene29473:intron | 50.0% | |
| AGTGAGGATGTTGTAACCGG+TGG | + | chr5.3:64459736-64459755 | None:intergenic | 50.0% | |
| ATAGTGCACCTTCACTGTCG+AGG | + | chr5.3:64461990-64462009 | None:intergenic | 50.0% | |
| CGATTACTGTGTTATCGCGG+CGG | - | chr5.3:64459698-64459717 | MS.gene29473:intron | 50.0% | |
| CGCCGCGATAACACAGTAAT+CGG | + | chr5.3:64459700-64459719 | None:intergenic | 50.0% | |
| GTTGTCAATGGCAGACCATG+GGG | + | chr5.3:64460814-64460833 | None:intergenic | 50.0% | |
| TTGTCAATGGCAGACCATGG+GGG | + | chr5.3:64460813-64460832 | None:intergenic | 50.0% | |
| !! | GGTTTTGTCTGCTAGGCATC+TGG | - | chr5.3:64459959-64459978 | MS.gene29473:intron | 50.0% |
| !! | GTGGACTGGGAGACTTTAGT+TGG | + | chr5.3:64462189-64462208 | None:intergenic | 50.0% |
| !!! | GGATATCGGTGGTGGGTTTT+TGG | - | chr5.3:64460723-64460742 | MS.gene29473:intron | 50.0% |
| !!! | GGATTTTTAGCTCTCCCCCA+TGG | - | chr5.3:64460796-64460815 | MS.gene29473:intron | 50.0% |
| ACCTGTGCAGGTAAGAGGAG+TGG | + | chr5.3:64462208-64462227 | None:intergenic | 55.0% | |
| CCATGGAGGATATCGGTGGT+GGG | - | chr5.3:64460716-64460735 | MS.gene29473:intron | 55.0% | |
| GCAAATGAGCTGCCCTGCAA+TGG | - | chr5.3:64461894-64461913 | MS.gene29473:intron | 55.0% | |
| TCCACTCCTCTTACCTGCAC+AGG | - | chr5.3:64462204-64462223 | MS.gene29473:intron | 55.0% | |
| TGCAGGTAAGAGGAGTGGAC+TGG | + | chr5.3:64462203-64462222 | None:intergenic | 55.0% | |
| ! | GCAGGTAAGAGGAGTGGACT+GGG | + | chr5.3:64462202-64462221 | None:intergenic | 55.0% |
| CCCACCACCGATATCCTCCA+TGG | + | chr5.3:64460719-64460738 | None:intergenic | 60.0% | |
| GCCATGGAGGATATCGGTGG+TGG | - | chr5.3:64460715-64460734 | MS.gene29473:intron | 60.0% | |
| GCGGATACGAGGATGTCCAC+CGG | - | chr5.3:64459717-64459736 | MS.gene29473:intron | 60.0% | |
| GTGTTATCGCGGCGGATACG+AGG | - | chr5.3:64459706-64459725 | MS.gene29473:intron | 60.0% | |
| TCGGCCATGGAGGATATCGG+TGG | - | chr5.3:64460712-64460731 | MS.gene29473:intron | 60.0% | |
| TTGGGCGGCCTCGACAGTGA+AGG | - | chr5.3:64461979-64461998 | MS.gene29473:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64459530 | 64463064 | 64459530 | ID=MS.gene29473 |
| chr5.3 | mRNA | 64459530 | 64463064 | 64459530 | ID=MS.gene29473.t1;Parent=MS.gene29473 |
| chr5.3 | exon | 64463018 | 64463064 | 64463018 | ID=MS.gene29473.t1.exon1;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64463018 | 64463064 | 64463018 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64462813 | 64462920 | 64462813 | ID=MS.gene29473.t1.exon2;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64462813 | 64462920 | 64462813 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64462614 | 64462695 | 64462614 | ID=MS.gene29473.t1.exon3;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64462614 | 64462695 | 64462614 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64460594 | 64460723 | 64460594 | ID=MS.gene29473.t1.exon4;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64460594 | 64460723 | 64460594 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64460369 | 64460511 | 64460369 | ID=MS.gene29473.t1.exon5;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64460369 | 64460511 | 64460369 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64459887 | 64459973 | 64459887 | ID=MS.gene29473.t1.exon6;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64459887 | 64459973 | 64459887 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| chr5.3 | exon | 64459530 | 64459604 | 64459530 | ID=MS.gene29473.t1.exon7;Parent=MS.gene29473.t1 |
| chr5.3 | CDS | 64459530 | 64459604 | 64459530 | ID=cds.MS.gene29473.t1;Parent=MS.gene29473.t1 |
| Gene Sequence |
| Protein sequence |
