Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43832.t1 | XP_012574544.1 | 100 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 9.00E-123 | 449.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43832.t1 | O82531 | 91.0 | 223 | 20 | 0 | 1 | 223 | 1 | 223 | 5.9e-115 | 414.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43832.t1 | A0A1S3EGP6 | 100.0 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 6.5e-123 | 449.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43832.t1 | MTR_5g079740 | 99.552 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 6.89e-170 | 466 |
| MS.gene43832.t1 | MTR_2g098010 | 99.103 | 223 | 2 | 0 | 1 | 223 | 1 | 223 | 4.60e-169 | 464 |
| MS.gene43832.t1 | MTR_5g079740 | 99.398 | 166 | 1 | 0 | 58 | 223 | 1 | 166 | 1.88e-122 | 344 |
| MS.gene43832.t1 | MTR_7g088490 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 5.83e-18 | 79.3 |
| MS.gene43832.t1 | MTR_4g087680 | 32.283 | 127 | 86 | 0 | 11 | 137 | 4 | 130 | 9.94e-17 | 75.9 |
| MS.gene43832.t1 | MTR_3g109210 | 27.273 | 209 | 126 | 4 | 15 | 217 | 13 | 201 | 4.03e-16 | 74.7 |
| MS.gene43832.t1 | MTR_4g023520 | 94.118 | 34 | 2 | 0 | 58 | 91 | 1 | 34 | 5.91e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43832.t1 | AT3G60820 | 86.996 | 223 | 29 | 0 | 1 | 223 | 1 | 223 | 7.59e-150 | 416 |
| MS.gene43832.t1 | AT3G60820 | 86.996 | 223 | 29 | 0 | 1 | 223 | 1 | 223 | 7.59e-150 | 416 |
| MS.gene43832.t1 | AT3G60820 | 86.099 | 223 | 31 | 0 | 1 | 223 | 1 | 223 | 7.52e-148 | 410 |
| MS.gene43832.t1 | AT1G21720 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 2.30e-18 | 80.5 |
| MS.gene43832.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.89e-17 | 77.8 |
| MS.gene43832.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.89e-17 | 77.8 |
| MS.gene43832.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 2.09e-13 | 67.4 |
| MS.gene43832.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 2.09e-13 | 67.4 |
| MS.gene43832.t1 | AT4G31300 | 24.878 | 205 | 137 | 3 | 15 | 217 | 12 | 201 | 2.38e-12 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTATTCTTTCAATGTTT+TGG | 0.153956 | 5.2:+59896616 | MS.gene43832:CDS |
| AGCGCACAAGTGTGAGATTT+TGG | 0.197547 | 5.2:-59894462 | None:intergenic |
| GATGAATACCACTGGCATTT+AGG | 0.287368 | 5.2:-59897703 | None:intergenic |
| AGATCTTGTGTTGCAATTGC+TGG | 0.324649 | 5.2:+59894368 | MS.gene43832:intron |
| CAAATCAACTGCTTCTGTTT+CGG | 0.327996 | 5.2:-59897325 | None:intergenic |
| AAATGTGTTATGGCTTCTTC+TGG | 0.334407 | 5.2:+59894583 | MS.gene43832:CDS |
| GGATATAGCTCTCAAGGTTC+TGG | 0.342345 | 5.2:+59896789 | MS.gene43832:CDS |
| TGACCAAACAACATGCTAAT+TGG | 0.342861 | 5.2:+59894225 | MS.gene43832:CDS |
| AAAACATTGAAAGAATAATA+AGG | 0.377276 | 5.2:-59896614 | None:intergenic |
| CGAAACAGAAGCAGTTGATT+TGG | 0.391493 | 5.2:+59897326 | MS.gene43832:CDS |
| GAAAGTAACTGAGCCATTGC+AGG | 0.408497 | 5.2:-59896563 | None:intergenic |
| CGCCGCGATAACACAGTAAT+CGG | 0.412401 | 5.2:-59894393 | None:intergenic |
| TACCCTCCATTGTTGTCATA+TGG | 0.417558 | 5.2:-59894251 | None:intergenic |
| GCTATATCCCACCCTTTCAT+AGG | 0.421527 | 5.2:-59896775 | None:intergenic |
| TTCAGTTGGTTATCAAGAAA+AGG | 0.424397 | 5.2:-59896828 | None:intergenic |
| AGACCAATTAGCATGTTGTT+TGG | 0.440025 | 5.2:-59894228 | None:intergenic |
| CAAACACACTTTATTACAAA+CGG | 0.446704 | 5.2:+59896585 | MS.gene43832:CDS |
| TGGTATTCATCGTGAATTCA+TGG | 0.458322 | 5.2:+59897715 | MS.gene43832:CDS |
| ATGTCACCTGTGCAGGTAAG+AGG | 0.462194 | 5.2:-59896866 | None:intergenic |
| ATTACGAATGTCACCTGTGC+AGG | 0.472838 | 5.2:-59896873 | None:intergenic |
| AAAAGCATCAGTCTTTCCTT+AGG | 0.494518 | 5.2:-59897739 | None:intergenic |
| TGCAGGTAAGAGGAGTGGGC+TGG | 0.498116 | 5.2:-59896856 | None:intergenic |
| GCAGGTAAGAGGAGTGGGCT+GGG | 0.505375 | 5.2:-59896855 | None:intergenic |
| ACGAGTGAGGATGTTGTAAC+CGG | 0.515362 | 5.2:-59894432 | None:intergenic |
| CAGGGCTGAGAAATGTGTTA+TGG | 0.517173 | 5.2:+59894573 | MS.gene43832:intron |
| GCAAATGAGCTGCCCTGCAA+TGG | 0.526195 | 5.2:+59896550 | MS.gene43832:CDS |
| ACTGCTTCTGTTTCGGACAG+TGG | 0.533798 | 5.2:-59897318 | None:intergenic |
| ATCGTGAATTCATGGACCTA+AGG | 0.538648 | 5.2:+59897723 | MS.gene43832:CDS |
| ATGCTGTTGGTTCCTATGAA+AGG | 0.538907 | 5.2:+59896763 | MS.gene43832:CDS |
| CCTGTGCAGGTAAGAGGAGT+GGG | 0.547557 | 5.2:-59896860 | None:intergenic |
| CCCACTCCTCTTACCTGCAC+AGG | 0.549497 | 5.2:+59896860 | MS.gene43832:CDS |
| TGATGTCAAGGCTTTGCAGA+AGG | 0.566876 | 5.2:+59894615 | MS.gene43832:CDS |
| ACCTGTGCAGGTAAGAGGAG+TGG | 0.568740 | 5.2:-59896861 | None:intergenic |
| AGGGTGGGATATAGCTCTCA+AGG | 0.576238 | 5.2:+59896783 | MS.gene43832:CDS |
| AAGAAAAGGCATAATTAGTG+TGG | 0.577076 | 5.2:-59896814 | None:intergenic |
| ATTAGCATGTTGTTTGGTCA+TGG | 0.577410 | 5.2:-59894222 | None:intergenic |
| AAAGTAACTGAGCCATTGCA+GGG | 0.583094 | 5.2:-59896562 | None:intergenic |
| CTCCATATGACAACAATGGA+GGG | 0.588306 | 5.2:+59894249 | MS.gene43832:CDS |
| GTGGGCTGGGAGACTTCAGT+TGG | 0.595224 | 5.2:-59896842 | None:intergenic |
| TGCTGTTGGTTCCTATGAAA+GGG | 0.597669 | 5.2:+59896764 | MS.gene43832:CDS |
| GAATTCACGATGAATACCAC+TGG | 0.608804 | 5.2:-59897711 | None:intergenic |
| TTGGGCGGCCTCGACAGTGA+AGG | 0.609126 | 5.2:+59896635 | MS.gene43832:CDS |
| GTGTTATCGCGGCGGATACG+AGG | 0.627619 | 5.2:+59894402 | MS.gene43832:CDS |
| TCTCCATATGACAACAATGG+AGG | 0.635572 | 5.2:+59894248 | MS.gene43832:CDS |
| AGTGAGGATGTTGTAACCGG+TGG | 0.639435 | 5.2:-59894429 | None:intergenic |
| TGGTCTCCATATGACAACAA+TGG | 0.646174 | 5.2:+59894245 | MS.gene43832:CDS |
| TTCAACCTGAATTAGGAAAG+GGG | 0.647601 | 5.2:+59896724 | MS.gene43832:intron |
| TGTTGGTTCCTATGAAAGGG+TGG | 0.648410 | 5.2:+59896767 | MS.gene43832:CDS |
| ATAGTGTACCTTCACTGTCG+AGG | 0.654158 | 5.2:-59896643 | None:intergenic |
| GTTGGTTCCTATGAAAGGGT+GGG | 0.677680 | 5.2:+59896768 | MS.gene43832:CDS |
| ATTGTCATCCTAAATGCCAG+TGG | 0.678670 | 5.2:+59897695 | MS.gene43832:CDS |
| GCGGATACGAGGATGTCCAC+CGG | 0.684403 | 5.2:+59894413 | MS.gene43832:CDS |
| ATCCGATTACTGTGTTATCG+CGG | 0.711087 | 5.2:+59894391 | MS.gene43832:CDS |
| CGATTACTGTGTTATCGCGG+CGG | 0.718453 | 5.2:+59894394 | MS.gene43832:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGATATTTATGTAAAA+GGG | - | chr5.2:59897614-59897633 | None:intergenic | 10.0% |
| !! | AAATAGTATTATTATTACTT+AGG | - | chr5.2:59894977-59894996 | None:intergenic | 10.0% |
| !! | AATAGTATTATTATTACTTA+GGG | - | chr5.2:59894976-59894995 | None:intergenic | 10.0% |
| !! | ATTAAAATATGATTTATTGT+AGG | + | chr5.2:59897284-59897303 | MS.gene43832:intron | 10.0% |
| !! | TAAAATGATATTTATGTAAA+AGG | - | chr5.2:59897615-59897634 | None:intergenic | 10.0% |
| !! | TATTTCCAAAAAAAAAATAA+AGG | - | chr5.2:59896034-59896053 | None:intergenic | 10.0% |
| !! | AAAACATTGAAAGAATAATA+AGG | - | chr5.2:59896617-59896636 | None:intergenic | 15.0% |
| !! | TTAAACAAAATAATCACTTT+GGG | - | chr5.2:59897185-59897204 | None:intergenic | 15.0% |
| !! | TTTAAACAAAATAATCACTT+TGG | - | chr5.2:59897186-59897205 | None:intergenic | 15.0% |
| !!! | ATAATTTAGAGATACTTTTT+TGG | + | chr5.2:59896972-59896991 | MS.gene43832:intron | 15.0% |
| !!! | CATAAATATCATTTTACATT+AGG | + | chr5.2:59897619-59897638 | MS.gene43832:intron | 15.0% |
| !!! | TAAATCATATTTTAATGTAG+AGG | - | chr5.2:59897280-59897299 | None:intergenic | 15.0% |
| !!! | TATGAAAATAAGTTGAAAAA+AGG | + | chr5.2:59894853-59894872 | MS.gene43832:intron | 15.0% |
| !!! | TATTATTCTTTCAATGTTTT+GGG | + | chr5.2:59896617-59896636 | MS.gene43832:CDS | 15.0% |
| !!! | TTATTATTCTTTCAATGTTT+TGG | + | chr5.2:59896616-59896635 | MS.gene43832:CDS | 15.0% |
| !! | AGAATCAATATAATGTCATA+CGG | - | chr5.2:59896499-59896518 | None:intergenic | 20.0% |
| !! | ATCTAACAACATAATTAATC+AGG | - | chr5.2:59896188-59896207 | None:intergenic | 20.0% |
| !! | CTATAAGTTGTTTATGTATA+AGG | + | chr5.2:59894816-59894835 | MS.gene43832:intron | 20.0% |
| !! | GTAACTACTATATAGAAAAA+TGG | - | chr5.2:59895966-59895985 | None:intergenic | 20.0% |
| !! | TATGTATGTAAACAAACTTA+CGG | - | chr5.2:59897394-59897413 | None:intergenic | 20.0% |
| !! | TCTGTTATAGTTAACTTATA+GGG | - | chr5.2:59895869-59895888 | None:intergenic | 20.0% |
| !! | TGAAATATTTGATGCTTTAA+GGG | + | chr5.2:59896906-59896925 | MS.gene43832:intron | 20.0% |
| !! | TGTTCTATCTTGATTAAATA+TGG | + | chr5.2:59897460-59897479 | MS.gene43832:intron | 20.0% |
| !! | TGTTTATGTATAAGGTATAT+TGG | + | chr5.2:59894824-59894843 | MS.gene43832:intron | 20.0% |
| !! | TTCTGATAAGAAACTATTTA+TGG | + | chr5.2:59895809-59895828 | MS.gene43832:intron | 20.0% |
| !! | TTGAAATATTTGATGCTTTA+AGG | + | chr5.2:59896905-59896924 | MS.gene43832:intron | 20.0% |
| !! | TTTGGATCTATATTATTACA+GGG | + | chr5.2:59897659-59897678 | MS.gene43832:intron | 20.0% |
| !!! | AATCTAAAAGGTATTACTTA+GGG | - | chr5.2:59895079-59895098 | None:intergenic | 20.0% |
| !!! | ACAGAGTTATTAGATTATTT+TGG | + | chr5.2:59895884-59895903 | MS.gene43832:intron | 20.0% |
| !!! | AGTTTGTTTACATACATAAA+TGG | + | chr5.2:59897396-59897415 | MS.gene43832:intron | 20.0% |
| !!! | ATTTATGTTGTTGTTGTTTA+AGG | + | chr5.2:59894527-59894546 | MS.gene43832:intron | 20.0% |
| !!! | TTAGAAATTTAGTGAGATTT+TGG | + | chr5.2:59896213-59896232 | MS.gene43832:intron | 20.0% |
| !!! | TTTAAGTTAGAATCAGTTTT+GGG | + | chr5.2:59895311-59895330 | MS.gene43832:intron | 20.0% |
| ! | AATGTATGGTGATTTATGTT+TGG | + | chr5.2:59895205-59895224 | MS.gene43832:intron | 25.0% |
| ! | ACTAAATTGTTGTCAAATAG+TGG | + | chr5.2:59896396-59896415 | MS.gene43832:intron | 25.0% |
| ! | CAAAATTGTAAAGAAAACCT+CGG | + | chr5.2:59896008-59896027 | MS.gene43832:intron | 25.0% |
| ! | CAAACACACTTTATTACAAA+CGG | + | chr5.2:59896585-59896604 | MS.gene43832:CDS | 25.0% |
| ! | CTCTGTTATAGTTAACTTAT+AGG | - | chr5.2:59895870-59895889 | None:intergenic | 25.0% |
| ! | CTTATAGGGTTATCATATTA+AGG | - | chr5.2:59895855-59895874 | None:intergenic | 25.0% |
| ! | GAAAATATGTGCAATCTAAA+AGG | - | chr5.2:59895091-59895110 | None:intergenic | 25.0% |
| ! | GGAACATTACAATAATAGAA+GGG | - | chr5.2:59896674-59896693 | None:intergenic | 25.0% |
| ! | GTTTGGATCTATATTATTAC+AGG | + | chr5.2:59897658-59897677 | MS.gene43832:intron | 25.0% |
| ! | TAGAGAGCTTAAAATCAATT+TGG | - | chr5.2:59895692-59895711 | None:intergenic | 25.0% |
| ! | TAGATTCTAAACGTATAGAA+TGG | - | chr5.2:59895378-59895397 | None:intergenic | 25.0% |
| ! | TATGTAAGCTTAAACATAAG+CGG | - | chr5.2:59894745-59894764 | None:intergenic | 25.0% |
| ! | TCAAATAAGCAATTTCAAAC+AGG | + | chr5.2:59894950-59894969 | MS.gene43832:intron | 25.0% |
| ! | TCAAGGTAAAATTAGAACAA+GGG | - | chr5.2:59896276-59896295 | None:intergenic | 25.0% |
| ! | TGAGTCAGAAAATACAAAAA+TGG | - | chr5.2:59896695-59896714 | None:intergenic | 25.0% |
| ! | TGGAACATTACAATAATAGA+AGG | - | chr5.2:59896675-59896694 | None:intergenic | 25.0% |
| ! | TTAACCAAAAAAGATATCCA+AGG | - | chr5.2:59895636-59895655 | None:intergenic | 25.0% |
| ! | TTGGATCTATATTATTACAG+GGG | + | chr5.2:59897660-59897679 | MS.gene43832:intron | 25.0% |
| !! | ATATCTGAAACTCAAAACAA+AGG | - | chr5.2:59895790-59895809 | None:intergenic | 25.0% |
| !! | TTAAGTTAGAATCAGTTTTG+GGG | + | chr5.2:59895312-59895331 | MS.gene43832:intron | 25.0% |
| !! | TTTAGATTGCACATATTTTC+AGG | + | chr5.2:59895091-59895110 | MS.gene43832:intron | 25.0% |
| !!! | AAGTTTTGTGACACTATTTA+GGG | - | chr5.2:59894914-59894933 | None:intergenic | 25.0% |
| !!! | AGCTGGAATTTGTAATTTTT+TGG | - | chr5.2:59895292-59895311 | None:intergenic | 25.0% |
| !!! | ATAGGTTTTAAATACTAAGC+CGG | - | chr5.2:59897494-59897513 | None:intergenic | 25.0% |
| !!! | ATTAGGACAAACTTTTAACT+TGG | + | chr5.2:59897636-59897655 | MS.gene43832:intron | 25.0% |
| !!! | CAATCTAAAAGGTATTACTT+AGG | - | chr5.2:59895080-59895099 | None:intergenic | 25.0% |
| !!! | CTTTAAGTTAGAATCAGTTT+TGG | + | chr5.2:59895310-59895329 | MS.gene43832:intron | 25.0% |
| !!! | TAAGTTTTGTGACACTATTT+AGG | - | chr5.2:59894915-59894934 | None:intergenic | 25.0% |
| !!! | TCTCGTGAAAATCATTTTTA+TGG | - | chr5.2:59897064-59897083 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTGTTTTGTGACA+GGG | + | chr5.2:59894555-59894574 | MS.gene43832:intron | 25.0% |
| !!! | TTTTTTGTTTGTTTTGTGAC+AGG | + | chr5.2:59894554-59894573 | MS.gene43832:intron | 25.0% |
| AAACCAATGCTGTCAAATAT+CGG | + | chr5.2:59895423-59895442 | MS.gene43832:intron | 30.0% | |
| AAACTATTTATGGACTCTCA+CGG | + | chr5.2:59895819-59895838 | MS.gene43832:intron | 30.0% | |
| AAAGGAACATTTAAACCTAG+AGG | - | chr5.2:59895772-59895791 | None:intergenic | 30.0% | |
| AAATTATTCTATCCCTTCAG+TGG | + | chr5.2:59896248-59896267 | MS.gene43832:intron | 30.0% | |
| AATGAGAAGTTGTTCTTAGT+AGG | - | chr5.2:59897088-59897107 | None:intergenic | 30.0% | |
| ACATTAGTGTTGTCAAATAG+CGG | + | chr5.2:59896324-59896343 | MS.gene43832:intron | 30.0% | |
| ACTATAACACTTTAGCATAG+CGG | + | chr5.2:59896429-59896448 | MS.gene43832:intron | 30.0% | |
| ATACTTCGACTTTGCAAAAT+AGG | - | chr5.2:59897512-59897531 | None:intergenic | 30.0% | |
| ATTAAATATGGAGCACATTC+CGG | + | chr5.2:59897472-59897491 | MS.gene43832:intron | 30.0% | |
| ATTTCGACTGCTGAAAATTT+GGG | + | chr5.2:59897588-59897607 | MS.gene43832:intron | 30.0% | |
| CAAAAAAAAAATAAAGGCCG+AGG | - | chr5.2:59896028-59896047 | None:intergenic | 30.0% | |
| GAGTTTATGAAAACAGCTTA+TGG | - | chr5.2:59894891-59894910 | None:intergenic | 30.0% | |
| GGTTATCATATTAAGGTTTC+TGG | - | chr5.2:59895848-59895867 | None:intergenic | 30.0% | |
| GTCAAGGTAAAATTAGAACA+AGG | - | chr5.2:59896277-59896296 | None:intergenic | 30.0% | |
| TATTTCGACTGCTGAAAATT+TGG | + | chr5.2:59897587-59897606 | MS.gene43832:intron | 30.0% | |
| TGATTATGTGAAACTGTTTC+TGG | + | chr5.2:59895168-59895187 | MS.gene43832:intron | 30.0% | |
| TGGATCTATATTATTACAGG+GGG | + | chr5.2:59897661-59897680 | MS.gene43832:intron | 30.0% | |
| TTAAGTTAGTGAGTTAGGAA+GGG | + | chr5.2:59895652-59895671 | MS.gene43832:intron | 30.0% | |
| TTAATCAAGATAGAACAGTC+TGG | - | chr5.2:59897457-59897476 | None:intergenic | 30.0% | |
| TTCAGTTGGTTATCAAGAAA+AGG | - | chr5.2:59896831-59896850 | None:intergenic | 30.0% | |
| TTTGGTTAAGTTAGTGAGTT+AGG | + | chr5.2:59895647-59895666 | MS.gene43832:intron | 30.0% | |
| ! | AACTGATTCTAACTTAAAGC+TGG | - | chr5.2:59895309-59895328 | None:intergenic | 30.0% |
| ! | AAGAAAAGGCATAATTAGTG+TGG | - | chr5.2:59896817-59896836 | None:intergenic | 30.0% |
| ! | CGAGGTTTTCTTTACAATTT+TGG | - | chr5.2:59896010-59896029 | None:intergenic | 30.0% |
| ! | TAAACTTAGAGTATTCCTCT+AGG | + | chr5.2:59895754-59895773 | MS.gene43832:intron | 30.0% |
| ! | TGAGTTGAATAGTACATTCA+AGG | + | chr5.2:59895246-59895265 | MS.gene43832:intron | 30.0% |
| !! | ACATATTTTCAGGATGACTT+TGG | + | chr5.2:59895101-59895120 | MS.gene43832:intron | 30.0% |
| !! | AGTTTTGTGACACTATTTAG+GGG | - | chr5.2:59894913-59894932 | None:intergenic | 30.0% |
| !! | CTTGATTGATTTGATGATAC+TGG | + | chr5.2:59896120-59896139 | MS.gene43832:intron | 30.0% |
| !! | TATTCTTTCAATGTTTTGGG+CGG | + | chr5.2:59896620-59896639 | MS.gene43832:CDS | 30.0% |
| !! | TATTTTTGCTCTTCCAAAAG+TGG | + | chr5.2:59895396-59895415 | MS.gene43832:intron | 30.0% |
| !!! | CATTCCTTGGATATCTTTTT+TGG | + | chr5.2:59895629-59895648 | MS.gene43832:intron | 30.0% |
| !!! | CTCGGCCTTTATTTTTTTTT+TGG | + | chr5.2:59896026-59896045 | MS.gene43832:intron | 30.0% |
| !!! | GACAAACTTTTAACTTGGTT+TGG | + | chr5.2:59897641-59897660 | MS.gene43832:intron | 30.0% |
| AAATGTGTTATGGCTTCTTC+TGG | + | chr5.2:59894583-59894602 | MS.gene43832:CDS | 35.0% | |
| ACTTCAACCTGAATTAGGAA+AGG | + | chr5.2:59896722-59896741 | MS.gene43832:intron | 35.0% | |
| AGAAAAAAGATGTAGCGAAC+AGG | + | chr5.2:59897231-59897250 | MS.gene43832:intron | 35.0% | |
| AGACCAATTAGCATGTTGTT+TGG | - | chr5.2:59894231-59894250 | None:intergenic | 35.0% | |
| CAAATCAACTGCTTCTGTTT+CGG | - | chr5.2:59897328-59897347 | None:intergenic | 35.0% | |
| CATAGAAACACTGCAAAAGA+AGG | - | chr5.2:59895914-59895933 | None:intergenic | 35.0% | |
| CTTCAACCTGAATTAGGAAA+GGG | + | chr5.2:59896723-59896742 | MS.gene43832:intron | 35.0% | |
| CTTCTACTTCAACCTGAATT+AGG | + | chr5.2:59896717-59896736 | MS.gene43832:intron | 35.0% | |
| GTTAAGTTAGTGAGTTAGGA+AGG | + | chr5.2:59895651-59895670 | MS.gene43832:intron | 35.0% | |
| TAGAAAAATGGCGAAGAGTT+TGG | - | chr5.2:59895954-59895973 | None:intergenic | 35.0% | |
| TAGTGTCACAAAACTTATGC+TGG | + | chr5.2:59894918-59894937 | MS.gene43832:intron | 35.0% | |
| TCAAATAAGCAAGTCCAAAC+AGG | + | chr5.2:59895053-59895072 | MS.gene43832:intron | 35.0% | |
| TCGTAGATTGCAGAAAATAG+CGG | - | chr5.2:59896467-59896486 | None:intergenic | 35.0% | |
| TGACCAAACAACATGCTAAT+TGG | + | chr5.2:59894225-59894244 | MS.gene43832:CDS | 35.0% | |
| TGCCAGTAGTTACGTTAAAA+TGG | + | chr5.2:59895001-59895020 | MS.gene43832:intron | 35.0% | |
| TGGTATTCATCGTGAATTCA+TGG | + | chr5.2:59897715-59897734 | MS.gene43832:CDS | 35.0% | |
| TGTTAGTCAAGCACAGTTTA+GGG | - | chr5.2:59897257-59897276 | None:intergenic | 35.0% | |
| TTCAACCTGAATTAGGAAAG+GGG | + | chr5.2:59896724-59896743 | MS.gene43832:intron | 35.0% | |
| ! | ACTAATGTCATTTCAGCTAG+AGG | - | chr5.2:59896312-59896331 | None:intergenic | 35.0% |
| ! | CGAAAAGTGAGTTGAATGTA+TGG | + | chr5.2:59895191-59895210 | MS.gene43832:intron | 35.0% |
| ! | GTTTGGTTCAATGTTGTCAA+TGG | - | chr5.2:59895572-59895591 | None:intergenic | 35.0% |
| ! | GTTTTCACATATGATGCTGT+TGG | + | chr5.2:59896750-59896769 | MS.gene43832:CDS | 35.0% |
| !! | AAAGTGTCACTTATGATACG+AGG | - | chr5.2:59894497-59894516 | None:intergenic | 35.0% |
| !! | AGAATGGATTGTGACATGTT+TGG | - | chr5.2:59895362-59895381 | None:intergenic | 35.0% |
| !! | CACCATTTTAACGTAACTAC+TGG | - | chr5.2:59895006-59895025 | None:intergenic | 35.0% |
| !! | GATATTTGACAGCATTGGTT+TGG | - | chr5.2:59895424-59895443 | None:intergenic | 35.0% |
| !!! | GAGGCTTCAATTTTTTGTCA+AGG | - | chr5.2:59896293-59896312 | None:intergenic | 35.0% |
| AAAGTAACTGAGCCATTGCA+GGG | - | chr5.2:59896565-59896584 | None:intergenic | 40.0% | |
| AAGGAGTCATCAACATTCCT+TGG | + | chr5.2:59895616-59895635 | MS.gene43832:intron | 40.0% | |
| AGATCTTGTGTTGCAATTGC+TGG | + | chr5.2:59894368-59894387 | MS.gene43832:intron | 40.0% | |
| ATATGACAACAATGGAGGGT+AGG | + | chr5.2:59894253-59894272 | MS.gene43832:intron | 40.0% | |
| ATCCGATTACTGTGTTATCG+CGG | + | chr5.2:59894391-59894410 | MS.gene43832:CDS | 40.0% | |
| ATCGTGAATTCATGGACCTA+AGG | + | chr5.2:59897723-59897742 | MS.gene43832:CDS | 40.0% | |
| ATTGTCATCCTAAATGCCAG+TGG | + | chr5.2:59897695-59897714 | MS.gene43832:CDS | 40.0% | |
| CGAAACAGAAGCAGTTGATT+TGG | + | chr5.2:59897326-59897345 | MS.gene43832:CDS | 40.0% | |
| CTCCATATGACAACAATGGA+GGG | + | chr5.2:59894249-59894268 | MS.gene43832:CDS | 40.0% | |
| GAATTCACGATGAATACCAC+TGG | - | chr5.2:59897714-59897733 | None:intergenic | 40.0% | |
| GATGAATACCACTGGCATTT+AGG | - | chr5.2:59897706-59897725 | None:intergenic | 40.0% | |
| GGTCATCAACATCGTATGTT+TGG | - | chr5.2:59895589-59895608 | None:intergenic | 40.0% | |
| GTCATGCATTCACACTATTG+CGG | + | chr5.2:59897429-59897448 | MS.gene43832:intron | 40.0% | |
| GTGTTAGTCAAGCACAGTTT+AGG | - | chr5.2:59897258-59897277 | None:intergenic | 40.0% | |
| TACCCTCCATTGTTGTCATA+TGG | - | chr5.2:59894254-59894273 | None:intergenic | 40.0% | |
| TATGACAACAATGGAGGGTA+GGG | + | chr5.2:59894254-59894273 | MS.gene43832:intron | 40.0% | |
| TCTCCATATGACAACAATGG+AGG | + | chr5.2:59894248-59894267 | MS.gene43832:CDS | 40.0% | |
| TGGTCTCCATATGACAACAA+TGG | + | chr5.2:59894245-59894264 | MS.gene43832:CDS | 40.0% | |
| TGGTTCAATGTTGTCAATGG+CGG | - | chr5.2:59895569-59895588 | None:intergenic | 40.0% | |
| ! | ACCAATTTTGTGAAGGATGG+TGG | + | chr5.2:59895488-59895507 | MS.gene43832:intron | 40.0% |
| ! | ACGACCAATTTTGTGAAGGA+TGG | + | chr5.2:59895485-59895504 | MS.gene43832:intron | 40.0% |
| ! | TGTCACGACCAATTTTGTGA+AGG | + | chr5.2:59895481-59895500 | MS.gene43832:intron | 40.0% |
| !! | ATGCTGTTGGTTCCTATGAA+AGG | + | chr5.2:59896763-59896782 | MS.gene43832:CDS | 40.0% |
| !! | TGCTGTTGGTTCCTATGAAA+GGG | + | chr5.2:59896764-59896783 | MS.gene43832:CDS | 40.0% |
| !! | TGGTTTTCAAGCTGATGTCA+AGG | + | chr5.2:59894603-59894622 | MS.gene43832:CDS | 40.0% |
| !!! | CATTGGTTTGGTTCCACTTT+TGG | - | chr5.2:59895412-59895431 | None:intergenic | 40.0% |
| !!! | TTTTGGAGTAATCACGAGTG+AGG | - | chr5.2:59894448-59894467 | None:intergenic | 40.0% |
| ACACACCCCTTTCCTAATTC+AGG | - | chr5.2:59896732-59896751 | None:intergenic | 45.0% | |
| ACGAGTGAGGATGTTGTAAC+CGG | - | chr5.2:59894435-59894454 | None:intergenic | 45.0% | |
| ATAGTGTACCTTCACTGTCG+AGG | - | chr5.2:59896646-59896665 | None:intergenic | 45.0% | |
| ATGCTGTCAAATATCGGCCA+TGG | + | chr5.2:59895429-59895448 | MS.gene43832:intron | 45.0% | |
| ATTACGAATGTCACCTGTGC+AGG | - | chr5.2:59896876-59896895 | None:intergenic | 45.0% | |
| CAGCCGTTATGTCGGAATTT+CGG | + | chr5.2:59895529-59895548 | MS.gene43832:intron | 45.0% | |
| CAGGGCTGAGAAATGTGTTA+TGG | + | chr5.2:59894573-59894592 | MS.gene43832:intron | 45.0% | |
| CCATATGTCAGCCGTTATGT+CGG | + | chr5.2:59895521-59895540 | MS.gene43832:intron | 45.0% | |
| GAAAGTAACTGAGCCATTGC+AGG | - | chr5.2:59896566-59896585 | None:intergenic | 45.0% | |
| GAGCCGAAATTCCGACATAA+CGG | - | chr5.2:59895535-59895554 | None:intergenic | 45.0% | |
| GCCACCATCCTTCACAAAAT+TGG | - | chr5.2:59895492-59895511 | None:intergenic | 45.0% | |
| GCTATATCCCACCCTTTCAT+AGG | - | chr5.2:59896778-59896797 | None:intergenic | 45.0% | |
| GGATATAGCTCTCAAGGTTC+TGG | + | chr5.2:59896789-59896808 | MS.gene43832:CDS | 45.0% | |
| GGTATTACTTAGGGCCTGTT+TGG | - | chr5.2:59895070-59895089 | None:intergenic | 45.0% | |
| GTTAGGAAGGGAACTTTGCT+CGG | + | chr5.2:59895664-59895683 | MS.gene43832:intron | 45.0% | |
| TAGTGTGAATGCATGACGAC+AGG | - | chr5.2:59897426-59897445 | None:intergenic | 45.0% | |
| TGATGTCAAGGCTTTGCAGA+AGG | + | chr5.2:59894615-59894634 | MS.gene43832:CDS | 45.0% | |
| TGGCCGATATTTGACAGCAT+TGG | - | chr5.2:59895429-59895448 | None:intergenic | 45.0% | |
| ! | AGCGCACAAGTGTGAGATTT+TGG | - | chr5.2:59894465-59894484 | None:intergenic | 45.0% |
| ! | GTTGGTTCCTATGAAAGGGT+GGG | + | chr5.2:59896768-59896787 | MS.gene43832:CDS | 45.0% |
| !! | ATACGATGTTGATGACCGCT+TGG | + | chr5.2:59895592-59895611 | MS.gene43832:intron | 45.0% |
| !! | GGTTTTGTCTGCTAGGCATT+TGG | + | chr5.2:59894636-59894655 | MS.gene43832:CDS | 45.0% |
| !! | TGCAGAAGGTTTTGTCTGCT+AGG | + | chr5.2:59894629-59894648 | MS.gene43832:CDS | 45.0% |
| !! | TGTTGGTTCCTATGAAAGGG+TGG | + | chr5.2:59896767-59896786 | MS.gene43832:CDS | 45.0% |
| !!! | TTTTCAATTTTATTTTTTTT+GGG | + | chr5.2:59894315-59894334 | MS.gene43832:intron | 5.0% |
| !!! | TTTTTCAATTTTATTTTTTT+TGG | + | chr5.2:59894314-59894333 | MS.gene43832:intron | 5.0% |
| ACTGCTTCTGTTTCGGACAG+TGG | - | chr5.2:59897321-59897340 | None:intergenic | 50.0% | |
| AGAACAAGGGAGCCACTGAA+GGG | - | chr5.2:59896263-59896282 | None:intergenic | 50.0% | |
| AGGGTGGGATATAGCTCTCA+AGG | + | chr5.2:59896783-59896802 | MS.gene43832:CDS | 50.0% | |
| AGTGAGGATGTTGTAACCGG+TGG | - | chr5.2:59894432-59894451 | None:intergenic | 50.0% | |
| ATGTCACCTGTGCAGGTAAG+AGG | - | chr5.2:59896869-59896888 | None:intergenic | 50.0% | |
| CCGACATAACGGCTGACATA+TGG | - | chr5.2:59895524-59895543 | None:intergenic | 50.0% | |
| CGATTACTGTGTTATCGCGG+CGG | + | chr5.2:59894394-59894413 | MS.gene43832:CDS | 50.0% | |
| CGCCGCGATAACACAGTAAT+CGG | - | chr5.2:59894396-59894415 | None:intergenic | 50.0% | |
| CTGTCAAATATCGGCCATGG+AGG | + | chr5.2:59895432-59895451 | MS.gene43832:intron | 50.0% | |
| TAGAACAAGGGAGCCACTGA+AGG | - | chr5.2:59896264-59896283 | None:intergenic | 50.0% | |
| ! | GGATGACTTTGGTGCGAGTT+TGG | + | chr5.2:59895112-59895131 | MS.gene43832:intron | 50.0% |
| !! | ATGTTGATGACCGCTTGGCA+AGG | + | chr5.2:59895597-59895616 | MS.gene43832:intron | 50.0% |
| !! | ATGTTGTCAATGGCGGACCA+TGG | - | chr5.2:59895562-59895581 | None:intergenic | 50.0% |
| !! | GTTGATGACTCCTTGCCAAG+CGG | - | chr5.2:59895610-59895629 | None:intergenic | 50.0% |
| !! | TTGGTGCGAGTTTGGTTCTG+CGG | + | chr5.2:59895120-59895139 | MS.gene43832:intron | 50.0% |
| !!! | GGATATCAGTGGCGGGTTTT+TGG | + | chr5.2:59895453-59895472 | MS.gene43832:intron | 50.0% |
| ACCTGTGCAGGTAAGAGGAG+TGG | - | chr5.2:59896864-59896883 | None:intergenic | 55.0% | |
| CCATGGAGGATATCAGTGGC+GGG | + | chr5.2:59895446-59895465 | MS.gene43832:intron | 55.0% | |
| CCTGTGCAGGTAAGAGGAGT+GGG | - | chr5.2:59896863-59896882 | None:intergenic | 55.0% | |
| GCAAATGAGCTGCCCTGCAA+TGG | + | chr5.2:59896550-59896569 | MS.gene43832:CDS | 55.0% | |
| GCCATGGAGGATATCAGTGG+CGG | + | chr5.2:59895445-59895464 | MS.gene43832:intron | 55.0% | |
| TCGGCCATGGAGGATATCAG+TGG | + | chr5.2:59895442-59895461 | MS.gene43832:intron | 55.0% | |
| ! | TGTGAAGGATGGTGGCACCA+CGG | + | chr5.2:59895496-59895515 | MS.gene43832:intron | 55.0% |
| !! | TTGTCAATGGCGGACCATGG+CGG | - | chr5.2:59895559-59895578 | None:intergenic | 55.0% |
| CCCACTCCTCTTACCTGCAC+AGG | + | chr5.2:59896860-59896879 | MS.gene43832:CDS | 60.0% | |
| CCCGCCACTGATATCCTCCA+TGG | - | chr5.2:59895449-59895468 | None:intergenic | 60.0% | |
| GCGGATACGAGGATGTCCAC+CGG | + | chr5.2:59894413-59894432 | MS.gene43832:CDS | 60.0% | |
| GGAATTTCGGCTCTCCGCCA+TGG | + | chr5.2:59895542-59895561 | MS.gene43832:intron | 60.0% | |
| GTGTTATCGCGGCGGATACG+AGG | + | chr5.2:59894402-59894421 | MS.gene43832:CDS | 60.0% | |
| TGCAGGTAAGAGGAGTGGGC+TGG | - | chr5.2:59896859-59896878 | None:intergenic | 60.0% | |
| ! | GCAGGTAAGAGGAGTGGGCT+GGG | - | chr5.2:59896858-59896877 | None:intergenic | 60.0% |
| !! | GTGGGCTGGGAGACTTCAGT+TGG | - | chr5.2:59896845-59896864 | None:intergenic | 60.0% |
| ACGGCTGACATATGGCGCCG+TGG | - | chr5.2:59895516-59895535 | None:intergenic | 65.0% | |
| TTGGGCGGCCTCGACAGTGA+AGG | + | chr5.2:59896635-59896654 | MS.gene43832:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 59894224 | 59897754 | 59894224 | ID=MS.gene43832 |
| chr5.2 | mRNA | 59894224 | 59897754 | 59894224 | ID=MS.gene43832.t1;Parent=MS.gene43832 |
| chr5.2 | exon | 59894224 | 59894270 | 59894224 | ID=MS.gene43832.t1.exon1;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59894224 | 59894270 | 59894224 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59894370 | 59894477 | 59894370 | ID=MS.gene43832.t1.exon2;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59894370 | 59894477 | 59894370 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59894576 | 59894657 | 59894576 | ID=MS.gene43832.t1.exon3;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59894576 | 59894657 | 59894576 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59896527 | 59896656 | 59896527 | ID=MS.gene43832.t1.exon4;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59896527 | 59896656 | 59896527 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59896739 | 59896881 | 59896739 | ID=MS.gene43832.t1.exon5;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59896739 | 59896881 | 59896739 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59897306 | 59897392 | 59897306 | ID=MS.gene43832.t1.exon6;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59897306 | 59897392 | 59897306 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| chr5.2 | exon | 59897680 | 59897754 | 59897680 | ID=MS.gene43832.t1.exon7;Parent=MS.gene43832.t1 |
| chr5.2 | CDS | 59897680 | 59897754 | 59897680 | ID=cds.MS.gene43832.t1;Parent=MS.gene43832.t1 |
| Gene Sequence |
| Protein sequence |
