Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32570.t1 | XP_012574544.1 | 100 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 9.00E-123 | 449.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32570.t1 | O82531 | 91.0 | 223 | 20 | 0 | 1 | 223 | 1 | 223 | 5.9e-115 | 414.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32570.t1 | A0A1S3EGP6 | 100.0 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 6.5e-123 | 449.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32570.t1 | MTR_5g079740 | 99.552 | 223 | 1 | 0 | 1 | 223 | 1 | 223 | 6.89e-170 | 466 |
| MS.gene32570.t1 | MTR_2g098010 | 99.103 | 223 | 2 | 0 | 1 | 223 | 1 | 223 | 4.60e-169 | 464 |
| MS.gene32570.t1 | MTR_5g079740 | 99.398 | 166 | 1 | 0 | 58 | 223 | 1 | 166 | 1.88e-122 | 344 |
| MS.gene32570.t1 | MTR_7g088490 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 5.83e-18 | 79.3 |
| MS.gene32570.t1 | MTR_4g087680 | 32.283 | 127 | 86 | 0 | 11 | 137 | 4 | 130 | 9.94e-17 | 75.9 |
| MS.gene32570.t1 | MTR_3g109210 | 27.273 | 209 | 126 | 4 | 15 | 217 | 13 | 201 | 4.03e-16 | 74.7 |
| MS.gene32570.t1 | MTR_4g023520 | 94.118 | 34 | 2 | 0 | 58 | 91 | 1 | 34 | 5.91e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32570.t1 | AT3G60820 | 86.996 | 223 | 29 | 0 | 1 | 223 | 1 | 223 | 7.59e-150 | 416 |
| MS.gene32570.t1 | AT3G60820 | 86.996 | 223 | 29 | 0 | 1 | 223 | 1 | 223 | 7.59e-150 | 416 |
| MS.gene32570.t1 | AT3G60820 | 86.099 | 223 | 31 | 0 | 1 | 223 | 1 | 223 | 7.52e-148 | 410 |
| MS.gene32570.t1 | AT1G21720 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 2.30e-18 | 80.5 |
| MS.gene32570.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.89e-17 | 77.8 |
| MS.gene32570.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.89e-17 | 77.8 |
| MS.gene32570.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 2.09e-13 | 67.4 |
| MS.gene32570.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 2.09e-13 | 67.4 |
| MS.gene32570.t1 | AT4G31300 | 24.878 | 205 | 137 | 3 | 15 | 217 | 12 | 201 | 2.38e-12 | 64.7 |
Find 49 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTATTCTTTCAATGTTT+TGG | 0.153956 | 5.1:-61975856 | MS.gene32570:CDS |
| AGATCTTGTGTTGCAATTGC+TGG | 0.324649 | 5.1:-61978230 | MS.gene32570:CDS |
| GATGAATACCACTGGCATTA+AGG | 0.331789 | 5.1:+61974794 | None:intergenic |
| AAATGTGTTATGGCTTCTTC+TGG | 0.334407 | 5.1:-61978020 | MS.gene32570:CDS |
| GGATATAGCTCTCAAGGTTC+TGG | 0.342345 | 5.1:-61975683 | MS.gene32570:CDS |
| TGACCAAACAACATGCTAAT+TGG | 0.342861 | 5.1:-61978371 | MS.gene32570:CDS |
| AAAACATTGAAAGAATAATA+AGG | 0.377276 | 5.1:+61975858 | None:intergenic |
| TGAAACAGAAGCAGTTGATT+TGG | 0.385508 | 5.1:-61975166 | MS.gene32570:CDS |
| GAAAGTAACTGAGCCATTGC+AGG | 0.408497 | 5.1:+61975909 | None:intergenic |
| CGCGGCGATAACACAGTAAT+CGG | 0.412401 | 5.1:+61978205 | None:intergenic |
| TACCCTCCATTGTTGTCATA+TGG | 0.414177 | 5.1:+61978345 | None:intergenic |
| GCTATATCCCACCCTTTCAT+AGG | 0.421527 | 5.1:+61975697 | None:intergenic |
| ACTTCACCTGTGCAGGTAAG+AGG | 0.429182 | 5.1:+61975606 | None:intergenic |
| TTTAGTTGATTATCAAGAAA+AGG | 0.433800 | 5.1:+61975644 | None:intergenic |
| AGACCAATTAGCATGTTGTT+TGG | 0.440025 | 5.1:+61978368 | None:intergenic |
| TGGTATTCATCGTGAATTCA+TGG | 0.458322 | 5.1:-61974782 | MS.gene32570:CDS |
| TTTACGAACTTCACCTGTGC+AGG | 0.482932 | 5.1:+61975599 | None:intergenic |
| ATCGTGAATTCATGGACCTT+AGG | 0.499460 | 5.1:-61974774 | MS.gene32570:CDS |
| ACGAGTGAGGATGTTGTAAC+CGG | 0.515362 | 5.1:+61978166 | None:intergenic |
| CAGAGCTGAGAAATGTGTTA+TGG | 0.517173 | 5.1:-61978030 | MS.gene32570:CDS |
| GCAGGTAAGAGGAGTGGACT+GGG | 0.519527 | 5.1:+61975617 | None:intergenic |
| GCAAATGAGCTGCCCTGCAA+TGG | 0.526195 | 5.1:-61975922 | MS.gene32570:CDS |
| TGCAGGTAAGAGGAGTGGAC+TGG | 0.534103 | 5.1:+61975616 | None:intergenic |
| ATGCTGTTGGTTCCTATGAA+AGG | 0.538907 | 5.1:-61975709 | MS.gene32570:CDS |
| TCCACTCCTCTTACCTGCAC+AGG | 0.541323 | 5.1:-61975612 | MS.gene32570:intron |
| TGATGTCAAGGCTTTGCAGA+AGG | 0.566876 | 5.1:-61977988 | MS.gene32570:CDS |
| AGGGTGGGATATAGCTCTCA+AGG | 0.576238 | 5.1:-61975689 | MS.gene32570:CDS |
| ATTAGCATGTTGTTTGGTCA+TGG | 0.577410 | 5.1:+61978374 | None:intergenic |
| AAAAGCATCAGTCTTTCCTA+AGG | 0.578578 | 5.1:+61974758 | None:intergenic |
| AAAGTAACTGAGCCATTGCA+GGG | 0.583094 | 5.1:+61975910 | None:intergenic |
| CTCCATATGACAACAATGGA+GGG | 0.588306 | 5.1:-61978347 | MS.gene32570:intron |
| ACCTGTGCAGGTAAGAGGAG+TGG | 0.590257 | 5.1:+61975611 | None:intergenic |
| ACTGCTTCTGTTTCAGACAG+TGG | 0.593751 | 5.1:+61975174 | None:intergenic |
| TGCTGTTGGTTCCTATGAAA+GGG | 0.597669 | 5.1:-61975708 | MS.gene32570:CDS |
| AAGAAAAGGCATAATGAGTG+TGG | 0.597780 | 5.1:+61975658 | None:intergenic |
| GAATTCACGATGAATACCAC+TGG | 0.608804 | 5.1:+61974786 | None:intergenic |
| TTGGGCGGCCTCGACAGTGA+AGG | 0.609126 | 5.1:-61975837 | MS.gene32570:intron |
| GTGTTATCGCCGCGGATACG+AGG | 0.627619 | 5.1:-61978196 | MS.gene32570:CDS |
| ATTGTCATCCTTAATGCCAG+TGG | 0.628525 | 5.1:-61974802 | MS.gene32570:CDS |
| TCTCCATATGACAACAATGG+AGG | 0.635572 | 5.1:-61978348 | MS.gene32570:CDS |
| AGTGAGGATGTTGTAACCGG+TGG | 0.639435 | 5.1:+61978169 | None:intergenic |
| TGGTCTCCATATGACAACAA+TGG | 0.646174 | 5.1:-61978351 | MS.gene32570:CDS |
| TTCAACCTGAATTAGGAAAG+GGG | 0.647601 | 5.1:-61975748 | MS.gene32570:intron |
| TGTTGGTTCCTATGAAAGGG+TGG | 0.648410 | 5.1:-61975705 | MS.gene32570:CDS |
| ATAATGTACCTTCACTGTCG+AGG | 0.651862 | 5.1:+61975829 | None:intergenic |
| GGTGGACATCCTCGTATCCG+CGG | 0.661219 | 5.1:+61978187 | None:intergenic |
| GTTGGTTCCTATGAAAGGGT+GGG | 0.677680 | 5.1:-61975704 | MS.gene32570:CDS |
| GCGGATACGAGGATGTCCAC+CGG | 0.691666 | 5.1:-61978185 | MS.gene32570:CDS |
| CGATTACTGTGTTATCGCCG+CGG | 0.718453 | 5.1:-61978204 | MS.gene32570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATAATATTACTTA+GGG | + | chr5.1:61975493-61975512 | None:intergenic | 10.0% |
| !! | TGAATTTATAAATTTCTTTA+TGG | - | chr5.1:61976746-61976765 | MS.gene32570:intron | 10.0% |
| !!! | AATAAAATAATAATCACTTT+TGG | + | chr5.1:61977853-61977872 | None:intergenic | 10.0% |
| !! | AAAACATTGAAAGAATAATA+AGG | + | chr5.1:61977282-61977301 | None:intergenic | 15.0% |
| !! | AAAATGACATTTATGTAAAA+GGG | + | chr5.1:61978254-61978273 | None:intergenic | 15.0% |
| !! | AATCTAAATAGTATTACATA+AGG | + | chr5.1:61975590-61975609 | None:intergenic | 15.0% |
| !! | ATTAAAATATGATTTATTGC+AGG | - | chr5.1:61977929-61977948 | MS.gene32570:intron | 15.0% |
| !! | CAATCTAAATAATATTACTT+AGG | + | chr5.1:61975494-61975513 | None:intergenic | 15.0% |
| !! | TAAAATGACATTTATGTAAA+AGG | + | chr5.1:61978255-61978274 | None:intergenic | 15.0% |
| !! | TGATTATGTAAAATTATTTC+TGG | - | chr5.1:61975678-61975697 | MS.gene32570:CDS | 15.0% |
| !! | TTAAAAAAATTAGAATCTGA+AGG | + | chr5.1:61977813-61977832 | None:intergenic | 15.0% |
| !!! | ATAATTTAGAGATACTTTTT+TGG | - | chr5.1:61977635-61977654 | MS.gene32570:intron | 15.0% |
| !!! | TAAATCATATTTTAATGTAG+AGG | + | chr5.1:61977925-61977944 | None:intergenic | 15.0% |
| !!! | TATTATTCTTTCAATGTTTT+GGG | - | chr5.1:61977282-61977301 | MS.gene32570:intron | 15.0% |
| !!! | TTATTATTCTTTCAATGTTT+TGG | - | chr5.1:61977281-61977300 | MS.gene32570:intron | 15.0% |
| !! | GATATACAATTATATGTTGA+GGG | + | chr5.1:61976607-61976626 | None:intergenic | 20.0% |
| !! | GTAACTTCTATATAGAAAAA+TGG | + | chr5.1:61976585-61976604 | None:intergenic | 20.0% |
| !! | TAAAAAATTCATACAGACTA+AGG | + | chr5.1:61976647-61976666 | None:intergenic | 20.0% |
| !! | TATAGTCAAACTTACTTATA+GGG | + | chr5.1:61976424-61976443 | None:intergenic | 20.0% |
| !! | TGAAATATTTGATGCTTTAA+GGG | - | chr5.1:61977571-61977590 | MS.gene32570:intron | 20.0% |
| !! | TTGAAATATTTGATGCTTTA+AGG | - | chr5.1:61977570-61977589 | MS.gene32570:intron | 20.0% |
| !! | TTTAGTTGATTATCAAGAAA+AGG | + | chr5.1:61977496-61977515 | None:intergenic | 20.0% |
| !!! | AAGCTAGAATTTGTAATTTT+AGG | + | chr5.1:61975800-61975819 | None:intergenic | 20.0% |
| !!! | CATAAATGTCATTTTACATT+AGG | - | chr5.1:61978259-61978278 | MS.gene32570:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCTATAT+TGG | - | chr5.1:61975341-61975360 | MS.gene32570:intron | 20.0% |
| !!! | TAAGGTTTTCTTTACAATTT+TGG | + | chr5.1:61976629-61976648 | None:intergenic | 20.0% |
| !!! | TACTTTTTTGGAGATTTTTA+AGG | - | chr5.1:61977647-61977666 | MS.gene32570:intron | 20.0% |
| !!! | TTTAGATTGCACATATTTTT+AGG | - | chr5.1:61975602-61975621 | MS.gene32570:intron | 20.0% |
| !!! | TTTTTTGATGTTGTTGTTTA+AGG | - | chr5.1:61975065-61975084 | MS.gene32570:intron | 20.0% |
| ! | AATAAAATAGTACTCCTCTA+GGG | - | chr5.1:61976252-61976271 | MS.gene32570:intron | 25.0% |
| ! | CTCGTTTAATAAAGATTGAA+CGG | + | chr5.1:61978107-61978126 | None:intergenic | 25.0% |
| ! | CTCTAACTACATAATTAATC+AGG | + | chr5.1:61976849-61976868 | None:intergenic | 25.0% |
| ! | GGAACATTACAATAATAGAA+GGG | + | chr5.1:61977339-61977358 | None:intergenic | 25.0% |
| ! | GGATATACAATTATATGTTG+AGG | + | chr5.1:61976608-61976627 | None:intergenic | 25.0% |
| ! | GTATAGTCAAACTTACTTAT+AGG | + | chr5.1:61976425-61976444 | None:intergenic | 25.0% |
| ! | TAACCAAAAAAAGATATCCA+AGG | + | chr5.1:61976131-61976150 | None:intergenic | 25.0% |
| ! | TATTCTTAACTATACAAAGC+AGG | - | chr5.1:61976331-61976350 | MS.gene32570:intron | 25.0% |
| ! | TCAAGGTAAAATTAGAACAT+GGG | + | chr5.1:61976939-61976958 | None:intergenic | 25.0% |
| ! | TGAGTCAGAAAATACAAAAA+TGG | + | chr5.1:61977360-61977379 | None:intergenic | 25.0% |
| ! | TGGAACATTACAATAATAGA+AGG | + | chr5.1:61977340-61977359 | None:intergenic | 25.0% |
| !! | AACATAAAGTGATTTGTGTT+TGG | - | chr5.1:61975715-61975734 | MS.gene32570:CDS | 25.0% |
| !! | ATATCTGAAACTCAAAACAA+AGG | + | chr5.1:61976287-61976306 | None:intergenic | 25.0% |
| !! | GACAAATGTTTAACTTACTT+TGG | - | chr5.1:61978281-61978300 | MS.gene32570:intron | 25.0% |
| !! | TAACTACTTGCTTATGTTTT+GGG | + | chr5.1:61975541-61975560 | None:intergenic | 25.0% |
| !! | TTAACTACTTGCTTATGTTT+TGG | + | chr5.1:61975542-61975561 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAACACTGTT+TGG | + | chr5.1:61975433-61975452 | None:intergenic | 25.0% |
| !!! | ATTCCTTGGATATCTTTTTT+TGG | - | chr5.1:61976125-61976144 | MS.gene32570:intron | 25.0% |
| !!! | CTTTAAGTTAGAATCAGTTT+TGG | - | chr5.1:61975817-61975836 | MS.gene32570:intron | 25.0% |
| !!! | TAAGTTTTGTAACACTGTTT+GGG | + | chr5.1:61975432-61975451 | None:intergenic | 25.0% |
| !!! | TTTGGATGTATGTTTTTACA+GGG | - | chr5.1:61978299-61978318 | MS.gene32570:intron | 25.0% |
| AAATTATGCTATACCTTCTG+CGG | - | chr5.1:61976911-61976930 | MS.gene32570:intron | 30.0% | |
| AACCAAACATACAATGTTGA+TGG | - | chr5.1:61976079-61976098 | MS.gene32570:intron | 30.0% | |
| AACTAATTCAGAAACACGTT+AGG | + | chr5.1:61976697-61976716 | None:intergenic | 30.0% | |
| AATGAGAAGTTGTTCTTAGT+AGG | + | chr5.1:61977763-61977782 | None:intergenic | 30.0% | |
| ACATCAGTAATGTTACAAAC+AGG | + | chr5.1:61976211-61976230 | None:intergenic | 30.0% | |
| ACATTAGTGTTGTCAAATAG+CGG | - | chr5.1:61976987-61977006 | MS.gene32570:intron | 30.0% | |
| CATCAGTAATGTTACAAACA+GGG | + | chr5.1:61976210-61976229 | None:intergenic | 30.0% | |
| CCAAAATAATCGAATAACTC+TGG | + | chr5.1:61976506-61976525 | None:intergenic | 30.0% | |
| CGTTCAATCTTTATTAAACG+AGG | - | chr5.1:61978105-61978124 | MS.gene32570:intron | 30.0% | |
| CTCAAATAAGTGATTCCAAA+CGG | - | chr5.1:61975563-61975582 | MS.gene32570:intron | 30.0% | |
| CTGGTATAGTTAGACTTATA+GGG | + | chr5.1:61976487-61976506 | None:intergenic | 30.0% | |
| CTTATAGGGCTATCATATTA+AGG | + | chr5.1:61976473-61976492 | None:intergenic | 30.0% | |
| CTTATAGGGCTATTACATTA+AGG | + | chr5.1:61976410-61976429 | None:intergenic | 30.0% | |
| GAATAAAATAGTACTCCTCT+AGG | - | chr5.1:61976251-61976270 | MS.gene32570:intron | 30.0% | |
| GTCAAGGTAAAATTAGAACA+TGG | + | chr5.1:61976940-61976959 | None:intergenic | 30.0% | |
| GTTAGTTAGAGATTTAGTGA+GGG | - | chr5.1:61976871-61976890 | MS.gene32570:intron | 30.0% | |
| TAGATTCTAGACGTATAGAA+TGG | + | chr5.1:61975885-61975904 | None:intergenic | 30.0% | |
| TCAAATAAGTGATTCCAAAC+GGG | - | chr5.1:61975564-61975583 | MS.gene32570:intron | 30.0% | |
| TCCAAATTGTTGTCAAATAG+TGG | - | chr5.1:61977061-61977080 | MS.gene32570:intron | 30.0% | |
| TCTGGTATAGTTAGACTTAT+AGG | + | chr5.1:61976488-61976507 | None:intergenic | 30.0% | |
| TGTTAGTTAAGCACAGTTTA+GGG | + | chr5.1:61977902-61977921 | None:intergenic | 30.0% | |
| TGTTAGTTAGAGATTTAGTG+AGG | - | chr5.1:61976870-61976889 | MS.gene32570:intron | 30.0% | |
| TTAATAAAGATTGAACGGTC+TGG | + | chr5.1:61978102-61978121 | None:intergenic | 30.0% | |
| ! | CCAGAGTTATTCGATTATTT+TGG | - | chr5.1:61976503-61976522 | MS.gene32570:intron | 30.0% |
| ! | GGCTATCATATTAAGGATTT+TGG | + | chr5.1:61976466-61976485 | None:intergenic | 30.0% |
| ! | TGAGTTGAATAGTACATTCA+AGG | - | chr5.1:61975755-61975774 | MS.gene32570:intron | 30.0% |
| ! | TTATTAAACGAGGCACATTT+TGG | - | chr5.1:61978115-61978134 | MS.gene32570:intron | 30.0% |
| ! | TTGCATTGGTGGTTTATTTA+TGG | - | chr5.1:61976364-61976383 | MS.gene32570:intron | 30.0% |
| !! | AGAATGGATTTTGACATGTT+TGG | + | chr5.1:61975869-61975888 | None:intergenic | 30.0% |
| !! | CTTTGGATGTATGTTTTTAC+AGG | - | chr5.1:61978298-61978317 | MS.gene32570:intron | 30.0% |
| !! | TATTCTTTCAATGTTTTGGG+CGG | - | chr5.1:61977285-61977304 | MS.gene32570:intron | 30.0% |
| !! | TATTTTTGCTCTTCCAATAG+TGG | - | chr5.1:61975903-61975922 | MS.gene32570:CDS | 30.0% |
| !! | TTGGATGTATGTTTTTACAG+GGG | - | chr5.1:61978300-61978319 | MS.gene32570:intron | 30.0% |
| !!! | CACATATTTTTAGGATGGAT+TGG | - | chr5.1:61975611-61975630 | MS.gene32570:intron | 30.0% |
| !!! | GATTGCACATATTTTTAGGA+TGG | - | chr5.1:61975606-61975625 | MS.gene32570:intron | 30.0% |
| AAAGGAACATTTAACCCTAG+AGG | + | chr5.1:61976269-61976288 | None:intergenic | 35.0% | |
| AAATGTGTTATGGCTTCTTC+TGG | - | chr5.1:61975117-61975136 | MS.gene32570:intron | 35.0% | |
| ACTTCAACCTGAATTAGGAA+AGG | - | chr5.1:61977387-61977406 | MS.gene32570:intron | 35.0% | |
| AGACCAATTAGCATGTTGTT+TGG | + | chr5.1:61974772-61974791 | None:intergenic | 35.0% | |
| CACTATTTGAGCTTAACTAC+TGG | + | chr5.1:61975517-61975536 | None:intergenic | 35.0% | |
| CATAGAAACACTGCGAAAAA+GGG | + | chr5.1:61976533-61976552 | None:intergenic | 35.0% | |
| CTTCAACCTGAATTAGGAAA+GGG | - | chr5.1:61977388-61977407 | MS.gene32570:intron | 35.0% | |
| CTTCTACTTCAACCTGAATT+AGG | - | chr5.1:61977382-61977401 | MS.gene32570:intron | 35.0% | |
| GCCACTATTTGACAACAATT+TGG | + | chr5.1:61977065-61977084 | None:intergenic | 35.0% | |
| GGTTTATTTATGGACTCTCA+TGG | - | chr5.1:61976374-61976393 | MS.gene32570:intron | 35.0% | |
| GTACTTCGACTTTGCAAAAT+AGG | + | chr5.1:61978156-61978175 | None:intergenic | 35.0% | |
| GTGTGAATGCAGAGTTATTT+CGG | - | chr5.1:61978212-61978231 | MS.gene32570:CDS | 35.0% | |
| GTGTTAGTTAAGCACAGTTT+AGG | + | chr5.1:61977903-61977922 | None:intergenic | 35.0% | |
| GTGTTGAATATTTGCATTGG+TGG | - | chr5.1:61976353-61976372 | MS.gene32570:intron | 35.0% | |
| TAGAAAAATGGCGAAGAGTT+TGG | + | chr5.1:61976573-61976592 | None:intergenic | 35.0% | |
| TCACATAAGCGATTTCAAAC+AGG | - | chr5.1:61975467-61975486 | MS.gene32570:intron | 35.0% | |
| TCATAGAAACACTGCGAAAA+AGG | + | chr5.1:61976534-61976553 | None:intergenic | 35.0% | |
| TCGTGAATTGCAGAAAATAG+CGG | + | chr5.1:61977132-61977151 | None:intergenic | 35.0% | |
| TGAAACAGAAGCAGTTGATT+TGG | - | chr5.1:61977971-61977990 | MS.gene32570:CDS | 35.0% | |
| TGACAAAAAATTGAAGCCTC+TGG | - | chr5.1:61976956-61976975 | MS.gene32570:intron | 35.0% | |
| TGACCAAACAACATGCTAAT+TGG | - | chr5.1:61974766-61974785 | MS.gene32570:CDS | 35.0% | |
| TGGTATTCATCGTGAATTCA+TGG | - | chr5.1:61978355-61978374 | MS.gene32570:CDS | 35.0% | |
| TTCAACCTGAATTAGGAAAG+GGG | - | chr5.1:61977389-61977408 | MS.gene32570:intron | 35.0% | |
| TTTGGTTAAGTTCGTGAGTT+AGG | - | chr5.1:61976143-61976162 | MS.gene32570:intron | 35.0% | |
| ! | AAGAAAAGGCATAATGAGTG+TGG | + | chr5.1:61977482-61977501 | None:intergenic | 35.0% |
| ! | ACTAATGTCATTTCAACCAG+AGG | + | chr5.1:61976975-61976994 | None:intergenic | 35.0% |
| ! | GAGCCAAAAATCTGAAATAC+CGG | + | chr5.1:61976030-61976049 | None:intergenic | 35.0% |
| ! | GTTTGGTTCAATGTTGTCAA+TGG | + | chr5.1:61976067-61976086 | None:intergenic | 35.0% |
| ! | GTTTTCACATATGATGCTGT+TGG | - | chr5.1:61977415-61977434 | MS.gene32570:intron | 35.0% |
| !! | ACAGTGTCACTTATGATACT+CGG | + | chr5.1:61975040-61975059 | None:intergenic | 35.0% |
| !! | CAGGTGTTGAATATTTGCAT+TGG | - | chr5.1:61976350-61976369 | MS.gene32570:intron | 35.0% |
| !! | TATGTTTTTACAGGGGGATA+AGG | - | chr5.1:61978307-61978326 | MS.gene32570:intron | 35.0% |
| !! | TGGATGTATGTTTTTACAGG+GGG | - | chr5.1:61978301-61978320 | MS.gene32570:intron | 35.0% |
| !!! | GAGGCTTCAATTTTTTGTCA+AGG | + | chr5.1:61976956-61976975 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTAATCACGAGTG+AGG | + | chr5.1:61974987-61975006 | None:intergenic | 35.0% |
| AAAGTAACTGAGCCATTGCA+GGG | + | chr5.1:61977230-61977249 | None:intergenic | 40.0% | |
| AACCAAACCAATGTTCATGG+AGG | - | chr5.1:61975926-61975945 | MS.gene32570:CDS | 40.0% | |
| AAGGAGTCATCAACATTCCT+TGG | - | chr5.1:61976111-61976130 | MS.gene32570:intron | 40.0% | |
| AAGTACGAGTCCCTCTTATA+AGG | - | chr5.1:61978170-61978189 | MS.gene32570:CDS | 40.0% | |
| AGATCTTGTGTTGCAATTGC+TGG | - | chr5.1:61974907-61974926 | MS.gene32570:intron | 40.0% | |
| AGTATTACATAAGGCCCGTT+TGG | + | chr5.1:61975581-61975600 | None:intergenic | 40.0% | |
| ATAATGTACCTTCACTGTCG+AGG | + | chr5.1:61977311-61977330 | None:intergenic | 40.0% | |
| ATATGACAACAATGGAGGGT+AGG | - | chr5.1:61974794-61974813 | MS.gene32570:CDS | 40.0% | |
| ATCATGCATTCACGCTATTG+CGG | - | chr5.1:61978074-61978093 | MS.gene32570:intron | 40.0% | |
| ATCGTGAATTCATGGACCTT+AGG | - | chr5.1:61978363-61978382 | MS.gene32570:CDS | 40.0% | |
| ATGTTCATGGAGGATATAGG+TGG | - | chr5.1:61975936-61975955 | MS.gene32570:CDS | 40.0% | |
| ATTGTCATCCTTAATGCCAG+TGG | - | chr5.1:61978335-61978354 | MS.gene32570:intron | 40.0% | |
| ATTTCAGCCGCCTTATAAGA+GGG | + | chr5.1:61978183-61978202 | None:intergenic | 40.0% | |
| CAAATATCTGTTCGACAGTG+CGG | + | chr5.1:61977019-61977038 | None:intergenic | 40.0% | |
| CAGAGCTGAGAAATGTGTTA+TGG | - | chr5.1:61975107-61975126 | MS.gene32570:intron | 40.0% | |
| CATCTCAAACCAATCAACCA+CGG | + | chr5.1:61976776-61976795 | None:intergenic | 40.0% | |
| CCAATGTTCATGGAGGATAT+AGG | - | chr5.1:61975933-61975952 | MS.gene32570:CDS | 40.0% | |
| CCTATATCCTCCATGAACAT+TGG | + | chr5.1:61975936-61975955 | None:intergenic | 40.0% | |
| CTCCATATGACAACAATGGA+GGG | - | chr5.1:61974790-61974809 | MS.gene32570:CDS | 40.0% | |
| GAATTCACGATGAATACCAC+TGG | + | chr5.1:61978354-61978373 | None:intergenic | 40.0% | |
| GATGAATACCACTGGCATTA+AGG | + | chr5.1:61978346-61978365 | None:intergenic | 40.0% | |
| GCTATAACACTGTAGCATAG+CGG | - | chr5.1:61977094-61977113 | MS.gene32570:intron | 40.0% | |
| GCTTATGTGAGCTTAACTAC+TGG | + | chr5.1:61975457-61975476 | None:intergenic | 40.0% | |
| GGCCATCAACATTGTATGTT+TGG | + | chr5.1:61976084-61976103 | None:intergenic | 40.0% | |
| GTTAAGTTCGTGAGTTAGGA+AGG | - | chr5.1:61976147-61976166 | MS.gene32570:intron | 40.0% | |
| GTTAGGAAGGAAACTTTGCT+AGG | - | chr5.1:61976160-61976179 | MS.gene32570:intron | 40.0% | |
| TACCCTCCATTGTTGTCATA+TGG | + | chr5.1:61974795-61974814 | None:intergenic | 40.0% | |
| TCTCCATATGACAACAATGG+AGG | - | chr5.1:61974789-61974808 | MS.gene32570:CDS | 40.0% | |
| TGGAACCAAACCAATGTTCA+TGG | - | chr5.1:61975923-61975942 | MS.gene32570:CDS | 40.0% | |
| TGGTCTCCATATGACAACAA+TGG | - | chr5.1:61974786-61974805 | MS.gene32570:CDS | 40.0% | |
| TGGTTCAATGTTGTCAATGG+CGG | + | chr5.1:61976064-61976083 | None:intergenic | 40.0% | |
| TGTAAAAGGGCCCAAAGTTT+CGG | + | chr5.1:61978241-61978260 | None:intergenic | 40.0% | |
| TTAGAGATTTAGTGAGGGTG+TGG | - | chr5.1:61976876-61976895 | MS.gene32570:intron | 40.0% | |
| ! | ATCCTCCATGAACATTGGTT+TGG | + | chr5.1:61975931-61975950 | None:intergenic | 40.0% |
| ! | ATGACCAATTTTGCGAAGGA+TGG | - | chr5.1:61975979-61975998 | MS.gene32570:intron | 40.0% |
| ! | CAGCCGGTATTTCAGATTTT+TGG | - | chr5.1:61976024-61976043 | MS.gene32570:intron | 40.0% |
| !! | AATTTCTTTATGGAGTGCCG+TGG | - | chr5.1:61976756-61976775 | MS.gene32570:intron | 40.0% |
| !! | ATGCTGTTGGTTCCTATGAA+AGG | - | chr5.1:61977428-61977447 | MS.gene32570:intron | 40.0% |
| !! | CATTGGTTTGGTTCCACTAT+TGG | + | chr5.1:61975919-61975938 | None:intergenic | 40.0% |
| !! | TGCTGTTGGTTCCTATGAAA+GGG | - | chr5.1:61977429-61977448 | MS.gene32570:intron | 40.0% |
| !! | TGGTTTTCAAGCTGATGTCA+AGG | - | chr5.1:61975137-61975156 | MS.gene32570:CDS | 40.0% |
| !!! | TTGGTGTGAGTTTGGTTTTG+CGG | - | chr5.1:61975630-61975649 | MS.gene32570:CDS | 40.0% |
| ACACACCCCTTTCCTAATTC+AGG | + | chr5.1:61977397-61977416 | None:intergenic | 45.0% | |
| ACGAGTGAGGATGTTGTAAC+CGG | + | chr5.1:61974974-61974993 | None:intergenic | 45.0% | |
| ACTGCTTCTGTTTCAGACAG+TGG | + | chr5.1:61977966-61977985 | None:intergenic | 45.0% | |
| ATTTCGGCTGCCGAAACTTT+GGG | - | chr5.1:61978228-61978247 | MS.gene32570:CDS | 45.0% | |
| GAAAGTAACTGAGCCATTGC+AGG | + | chr5.1:61977231-61977250 | None:intergenic | 45.0% | |
| GAAGAGTTTGGCAATGTGTG+TGG | + | chr5.1:61976561-61976580 | None:intergenic | 45.0% | |
| GATTTCAGCCGCCTTATAAG+AGG | + | chr5.1:61978184-61978203 | None:intergenic | 45.0% | |
| GCTATATCCCACCCTTTCAT+AGG | + | chr5.1:61977443-61977462 | None:intergenic | 45.0% | |
| GGATATAGCTCTCAAGGTTC+TGG | - | chr5.1:61977454-61977473 | MS.gene32570:intron | 45.0% | |
| TACGAGTCCCTCTTATAAGG+CGG | - | chr5.1:61978173-61978192 | MS.gene32570:CDS | 45.0% | |
| TAGCGTGAATGCATGATGAC+AGG | + | chr5.1:61978071-61978090 | None:intergenic | 45.0% | |
| TATTTCGGCTGCCGAAACTT+TGG | - | chr5.1:61978227-61978246 | MS.gene32570:CDS | 45.0% | |
| TGATGTCAAGGCTTTGCAGA+AGG | - | chr5.1:61975149-61975168 | MS.gene32570:CDS | 45.0% | |
| TTCATGGAGGATATAGGTGG+CGG | - | chr5.1:61975939-61975958 | MS.gene32570:CDS | 45.0% | |
| TTTACGAACTTCACCTGTGC+AGG | + | chr5.1:61977541-61977560 | None:intergenic | 45.0% | |
| ! | GTTGGTTCCTATGAAAGGGT+GGG | - | chr5.1:61977433-61977452 | MS.gene32570:intron | 45.0% |
| ! | TGCGATGACCAATTTTGCGA+AGG | - | chr5.1:61975975-61975994 | MS.gene32570:intron | 45.0% |
| !! | AGGATGGATTGGTGTGAGTT+TGG | - | chr5.1:61975622-61975641 | MS.gene32570:CDS | 45.0% |
| !! | GGTTTTGTCTGCTAGGCATT+TGG | - | chr5.1:61975170-61975189 | MS.gene32570:CDS | 45.0% |
| !! | TGCAGAAGGTTTTGTCTGCT+AGG | - | chr5.1:61975163-61975182 | MS.gene32570:CDS | 45.0% |
| !! | TGTTGGTTCCTATGAAAGGG+TGG | - | chr5.1:61977432-61977451 | MS.gene32570:intron | 45.0% |
| !!! | ATGAATTTTTTATTTTTTTT+TGG | - | chr5.1:61976655-61976674 | MS.gene32570:intron | 5.0% |
| !!! | TTTTTCAATTATATATTTTT+TGG | - | chr5.1:61974854-61974873 | MS.gene32570:intron | 5.0% |
| ACTTCACCTGTGCAGGTAAG+AGG | + | chr5.1:61977534-61977553 | None:intergenic | 50.0% | |
| AGGGTGGGATATAGCTCTCA+AGG | - | chr5.1:61977448-61977467 | MS.gene32570:intron | 50.0% | |
| AGTGAGGATGTTGTAACCGG+TGG | + | chr5.1:61974971-61974990 | None:intergenic | 50.0% | |
| CGATTACTGTGTTATCGCCG+CGG | - | chr5.1:61974933-61974952 | MS.gene32570:intron | 50.0% | |
| CGCGGCGATAACACAGTAAT+CGG | + | chr5.1:61974935-61974954 | None:intergenic | 50.0% | |
| TCATGGAGGATATAGGTGGC+GGG | - | chr5.1:61975940-61975959 | MS.gene32570:CDS | 50.0% | |
| !! | ATACAATGTTGATGGCCGCG+TGG | - | chr5.1:61976087-61976106 | MS.gene32570:intron | 50.0% |
| !! | TATGGAGTGCCGTGGTTGAT+TGG | - | chr5.1:61976764-61976783 | MS.gene32570:intron | 50.0% |
| !! | TTGTCAATGGCGGACAGTAG+CGG | + | chr5.1:61976054-61976073 | None:intergenic | 50.0% |
| ACCTGTGCAGGTAAGAGGAG+TGG | + | chr5.1:61977529-61977548 | None:intergenic | 55.0% | |
| CCACGACGTGATATGTCAGC+CGG | - | chr5.1:61976008-61976027 | MS.gene32570:intron | 55.0% | |
| CGCGCCATCCTTCGCAAAAT+TGG | + | chr5.1:61975986-61976005 | None:intergenic | 55.0% | |
| CGGCTGACATATCACGTCGT+GGG | + | chr5.1:61976010-61976029 | None:intergenic | 55.0% | |
| GCAAATGAGCTGCCCTGCAA+TGG | - | chr5.1:61977215-61977234 | MS.gene32570:intron | 55.0% | |
| TAGAACATGGGAGCCGCAGA+AGG | + | chr5.1:61976927-61976946 | None:intergenic | 55.0% | |
| TCCACTCCTCTTACCTGCAC+AGG | - | chr5.1:61977525-61977544 | MS.gene32570:intron | 55.0% | |
| TGCAGGTAAGAGGAGTGGAC+TGG | + | chr5.1:61977524-61977543 | None:intergenic | 55.0% | |
| ! | GCAGGTAAGAGGAGTGGACT+GGG | + | chr5.1:61977523-61977542 | None:intergenic | 55.0% |
| !! | GTTGATGACTCCTTGCCACG+CGG | + | chr5.1:61976105-61976124 | None:intergenic | 55.0% |
| CCGGCTGACATATCACGTCG+TGG | + | chr5.1:61976011-61976030 | None:intergenic | 60.0% | |
| GCGGATACGAGGATGTCCAC+CGG | - | chr5.1:61974952-61974971 | MS.gene32570:intron | 60.0% | |
| GGTGGACATCCTCGTATCCG+CGG | + | chr5.1:61974953-61974972 | None:intergenic | 60.0% | |
| GTGTTATCGCCGCGGATACG+AGG | - | chr5.1:61974941-61974960 | MS.gene32570:intron | 60.0% | |
| !! | ATGTTGATGGCCGCGTGGCA+AGG | - | chr5.1:61976092-61976111 | MS.gene32570:intron | 60.0% |
| TTGGGCGGCCTCGACAGTGA+AGG | - | chr5.1:61977300-61977319 | MS.gene32570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 61974765 | 61978394 | 61974765 | ID=MS.gene32570 |
| chr5.1 | mRNA | 61974765 | 61978394 | 61974765 | ID=MS.gene32570.t1;Parent=MS.gene32570 |
| chr5.1 | exon | 61978348 | 61978394 | 61978348 | ID=MS.gene32570.t1.exon1;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61978348 | 61978394 | 61978348 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61978143 | 61978250 | 61978143 | ID=MS.gene32570.t1.exon2;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61978143 | 61978250 | 61978143 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61977968 | 61978049 | 61977968 | ID=MS.gene32570.t1.exon3;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61977968 | 61978049 | 61977968 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61975838 | 61975967 | 61975838 | ID=MS.gene32570.t1.exon4;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61975838 | 61975967 | 61975838 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61975613 | 61975755 | 61975613 | ID=MS.gene32570.t1.exon5;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61975613 | 61975755 | 61975613 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61975122 | 61975208 | 61975122 | ID=MS.gene32570.t1.exon6;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61975122 | 61975208 | 61975122 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| chr5.1 | exon | 61974765 | 61974839 | 61974765 | ID=MS.gene32570.t1.exon7;Parent=MS.gene32570.t1 |
| chr5.1 | CDS | 61974765 | 61974839 | 61974765 | ID=cds.MS.gene32570.t1;Parent=MS.gene32570.t1 |
| Gene Sequence |
| Protein sequence |
