Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029314.t1 | XP_013470289.1 | 100 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 3.40E-128 | 467.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029314.t1 | Q9M4T8 | 98.3 | 237 | 4 | 0 | 1 | 237 | 1 | 237 | 4.5e-129 | 461.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029314.t1 | I3SSX1 | 100.0 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 2.4e-128 | 467.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029314.t1 | MTR_1g112250 | 100.000 | 237 | 0 | 0 | 1 | 237 | 1 | 237 | 6.99e-179 | 490 |
| MS.gene029314.t1 | MTR_6g013300 | 62.150 | 214 | 64 | 5 | 31 | 237 | 133 | 336 | 5.84e-75 | 230 |
| MS.gene029314.t1 | MTR_5g016590 | 42.324 | 241 | 121 | 7 | 8 | 236 | 5 | 239 | 5.90e-59 | 187 |
| MS.gene029314.t1 | MTR_7g070070 | 45.161 | 217 | 107 | 5 | 8 | 218 | 5 | 215 | 3.07e-58 | 185 |
| MS.gene029314.t1 | MTR_2g016050 | 40.343 | 233 | 129 | 5 | 6 | 234 | 2 | 228 | 1.55e-50 | 165 |
| MS.gene029314.t1 | MTR_8g075320 | 41.593 | 226 | 124 | 4 | 8 | 231 | 4 | 223 | 1.73e-50 | 165 |
| MS.gene029314.t1 | MTR_0167s0060 | 35.526 | 228 | 142 | 2 | 6 | 231 | 4 | 228 | 1.86e-47 | 157 |
| MS.gene029314.t1 | MTR_1g022410 | 46.154 | 182 | 93 | 2 | 3 | 184 | 1 | 177 | 3.76e-47 | 157 |
| MS.gene029314.t1 | MTR_8g464460 | 34.199 | 231 | 142 | 5 | 8 | 231 | 9 | 236 | 1.82e-40 | 139 |
| MS.gene029314.t1 | MTR_2g060830 | 32.900 | 231 | 145 | 5 | 8 | 231 | 9 | 236 | 9.43e-39 | 135 |
| MS.gene029314.t1 | MTR_6g024135 | 34.783 | 207 | 120 | 2 | 6 | 206 | 6 | 203 | 4.23e-38 | 133 |
| MS.gene029314.t1 | MTR_4g012740 | 32.127 | 221 | 105 | 4 | 3 | 184 | 232 | 446 | 1.72e-24 | 101 |
| MS.gene029314.t1 | MTR_4g057090 | 34.239 | 184 | 97 | 7 | 11 | 184 | 91 | 260 | 2.26e-17 | 80.1 |
| MS.gene029314.t1 | MTR_3g089040 | 28.313 | 166 | 107 | 3 | 34 | 196 | 54 | 210 | 1.15e-14 | 71.6 |
| MS.gene029314.t1 | MTR_5g006840 | 30.464 | 151 | 94 | 3 | 45 | 192 | 13 | 155 | 9.80e-13 | 65.5 |
| MS.gene029314.t1 | MTR_5g012470 | 28.249 | 177 | 114 | 4 | 42 | 213 | 10 | 178 | 1.17e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029314.t1 | AT3G14290 | 97.468 | 237 | 6 | 0 | 1 | 237 | 1 | 237 | 1.10e-175 | 482 |
| MS.gene029314.t1 | AT1G53850 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.38e-175 | 481 |
| MS.gene029314.t1 | AT1G53850 | 97.046 | 237 | 7 | 0 | 1 | 237 | 1 | 237 | 3.38e-175 | 481 |
| MS.gene029314.t1 | AT3G22110 | 41.494 | 241 | 123 | 7 | 8 | 236 | 5 | 239 | 1.09e-56 | 181 |
| MS.gene029314.t1 | AT5G66140 | 43.000 | 200 | 108 | 3 | 8 | 205 | 4 | 199 | 5.82e-48 | 159 |
| MS.gene029314.t1 | AT1G16470 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.49e-47 | 157 |
| MS.gene029314.t1 | AT1G16470 | 35.088 | 228 | 143 | 2 | 6 | 231 | 4 | 228 | 1.49e-47 | 157 |
| MS.gene029314.t1 | AT3G51260 | 41.038 | 212 | 117 | 4 | 7 | 216 | 3 | 208 | 1.57e-47 | 157 |
| MS.gene029314.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene029314.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene029314.t1 | AT1G79210 | 34.188 | 234 | 149 | 2 | 6 | 237 | 4 | 234 | 1.60e-47 | 157 |
| MS.gene029314.t1 | AT3G51260 | 42.500 | 200 | 109 | 3 | 8 | 205 | 4 | 199 | 2.55e-47 | 157 |
| MS.gene029314.t1 | AT5G42790 | 39.506 | 243 | 125 | 4 | 3 | 234 | 1 | 232 | 1.92e-46 | 155 |
| MS.gene029314.t1 | AT1G47250 | 45.856 | 181 | 93 | 2 | 3 | 183 | 1 | 176 | 2.94e-46 | 155 |
| MS.gene029314.t1 | AT5G35590 | 35.498 | 231 | 139 | 5 | 8 | 231 | 9 | 236 | 2.76e-41 | 141 |
| MS.gene029314.t1 | AT2G27020 | 33.333 | 207 | 123 | 2 | 6 | 206 | 6 | 203 | 5.55e-38 | 133 |
| MS.gene029314.t1 | AT2G05840 | 34.434 | 212 | 132 | 4 | 8 | 215 | 9 | 217 | 2.04e-37 | 130 |
| MS.gene029314.t1 | AT2G05840 | 34.419 | 215 | 134 | 4 | 8 | 218 | 9 | 220 | 2.70e-37 | 131 |
| MS.gene029314.t1 | AT2G27020 | 33.333 | 207 | 123 | 2 | 6 | 206 | 108 | 305 | 8.22e-37 | 132 |
| MS.gene029314.t1 | AT4G15165 | 31.535 | 241 | 105 | 6 | 8 | 236 | 5 | 197 | 3.71e-35 | 124 |
| MS.gene029314.t1 | AT2G05840 | 35.263 | 190 | 118 | 3 | 8 | 195 | 9 | 195 | 5.92e-35 | 124 |
| MS.gene029314.t1 | AT3G26340 | 26.500 | 200 | 132 | 5 | 27 | 220 | 48 | 238 | 7.60e-15 | 72.4 |
| MS.gene029314.t1 | AT1G13060 | 25.654 | 191 | 129 | 4 | 34 | 220 | 57 | 238 | 1.05e-13 | 69.3 |
| MS.gene029314.t1 | AT4G14800 | 28.652 | 178 | 115 | 4 | 45 | 218 | 13 | 182 | 2.94e-12 | 63.9 |
| MS.gene029314.t1 | AT5G40580 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.84e-12 | 64.7 |
| MS.gene029314.t1 | AT5G40580 | 25.616 | 203 | 141 | 3 | 31 | 231 | 36 | 230 | 3.84e-12 | 64.7 |
| MS.gene029314.t1 | AT3G27430 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 7.31e-12 | 63.9 |
| MS.gene029314.t1 | AT4G14800 | 28.495 | 186 | 121 | 4 | 45 | 218 | 13 | 198 | 7.47e-12 | 63.2 |
| MS.gene029314.t1 | AT3G27430 | 26.108 | 203 | 140 | 3 | 31 | 231 | 36 | 230 | 9.13e-12 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATCCTTCTGGCACATTT+TGG | 0.189061 | 1.4:+86226708 | MS.gene029314:CDS |
| TCCCGAAGGACGTTTGTTTC+AGG | 0.228080 | 1.4:+86223867 | MS.gene029314:CDS |
| GTGACCTAGCCTTGCGCTTT+GGG | 0.251856 | 1.4:+86225221 | MS.gene029314:CDS |
| ATATGCAATTGAAGCTATTA+AGG | 0.287746 | 1.4:+86223894 | MS.gene029314:CDS |
| CTTTGGCAGTCTCGACCATT+TGG | 0.312188 | 1.4:+86225681 | MS.gene029314:intron |
| GGAGTGTCTCTCCTTATTGC+TGG | 0.335194 | 1.4:+86225702 | MS.gene029314:CDS |
| TGTGACCTAGCCTTGCGCTT+TGG | 0.345737 | 1.4:+86225220 | MS.gene029314:CDS |
| CAGAATCACAGGTTCTCTTA+TGG | 0.347192 | 1.4:+86225160 | MS.gene029314:intron |
| CAATGCAATGCAAAGGCTAT+TGG | 0.347609 | 1.4:+86226731 | MS.gene029314:CDS |
| TCTCGTCATGGCCAGCAATA+AGG | 0.348529 | 1.4:-86225713 | None:intergenic |
| TAGCAGTGTGGAGAAAATTA+TGG | 0.362258 | 1.4:+86224956 | MS.gene029314:CDS |
| ATCAATTCTGAAGCAAGTTA+TGG | 0.388035 | 1.4:+86228030 | MS.gene029314:CDS |
| AACCTGAAACAAACGTCCTT+CGG | 0.394934 | 1.4:-86223869 | None:intergenic |
| CCAACAACGTTGACATTGCC+AGG | 0.408754 | 1.4:+86228160 | MS.gene029314:CDS |
| ACCTGAAACAAACGTCCTTC+GGG | 0.423347 | 1.4:-86223868 | None:intergenic |
| CCTGGCAATGTCAACGTTGT+TGG | 0.426746 | 1.4:-86228160 | None:intergenic |
| CAGCTTGGATCAACTGCGAT+TGG | 0.442542 | 1.4:+86224003 | MS.gene029314:intron |
| CTGGCAATGTCAACGTTGTT+GGG | 0.454160 | 1.4:-86228159 | None:intergenic |
| GCGTATTACTTCGCCTCTAC+TGG | 0.457074 | 1.4:+86224065 | MS.gene029314:CDS |
| AGATATTACACTGATCCTTC+TGG | 0.466365 | 1.4:+86226698 | MS.gene029314:intron |
| AATGCAAAGGCTATTGGTTC+AGG | 0.500036 | 1.4:+86226737 | MS.gene029314:CDS |
| CTAGCCTTGCGCTTTGGGGA+AGG | 0.509941 | 1.4:+86225226 | MS.gene029314:CDS |
| ATTGCTGGCCATGACGAGAA+TGG | 0.514622 | 1.4:+86225717 | MS.gene029314:CDS |
| GGAATATATACTTACAGGCT+AGG | 0.527284 | 1.4:-86225741 | None:intergenic |
| ATCACAGCTTCCACCTCAGA+CGG | 0.535599 | 1.4:-86228210 | None:intergenic |
| TCACAGCTTCCACCTCAGAC+GGG | 0.536535 | 1.4:-86228209 | None:intergenic |
| TCTTTATACCCCGTCTGAGG+TGG | 0.544181 | 1.4:+86228200 | MS.gene029314:CDS |
| CTTGAAAACGAAAGAGGGTG+TGG | 0.545014 | 1.4:+86224026 | MS.gene029314:CDS |
| ATGATACGCTGGAGCAACCC+TGG | 0.548475 | 1.4:-86228178 | None:intergenic |
| CTTCCCCAAAGCGCAAGGCT+AGG | 0.558153 | 1.4:-86225225 | None:intergenic |
| GAAGCAAGTTATGGAAGAGA+AGG | 0.568369 | 1.4:+86228039 | MS.gene029314:CDS |
| GGCTAGGTCCATTCTCGTCA+TGG | 0.580425 | 1.4:-86225725 | None:intergenic |
| ATAAGGAGAGACACTCCAAA+TGG | 0.589626 | 1.4:-86225696 | None:intergenic |
| TGACCTAGCCTTGCGCTTTG+GGG | 0.590485 | 1.4:+86225222 | MS.gene029314:CDS |
| ATCACCTTCCCCAAAGCGCA+AGG | 0.591699 | 1.4:-86225230 | None:intergenic |
| GCTATTGGTTCAGGATCAGA+AGG | 0.597231 | 1.4:+86226746 | MS.gene029314:CDS |
| GGAAGGTGATGAAGAATCCA+TGG | 0.599188 | 1.4:+86225243 | MS.gene029314:CDS |
| GTTGTAGACTCTACAGTCAT+CGG | 0.602200 | 1.4:-86225187 | None:intergenic |
| CACATTGGCTGTGCAATGAG+TGG | 0.606594 | 1.4:+86224990 | MS.gene029314:CDS |
| GATTGGCTTGAAAACGAAAG+AGG | 0.610207 | 1.4:+86224020 | MS.gene029314:CDS |
| CATTGCCAAAATGTGCCAGA+AGG | 0.618837 | 1.4:-86226713 | None:intergenic |
| AAACCAACATGTTTCTCACA+AGG | 0.620638 | 1.4:+86223671 | None:intergenic |
| ATGGAAATTGATGATCACAT+TGG | 0.621320 | 1.4:+86224975 | MS.gene029314:CDS |
| GAATAGGTACATACCAGTAG+AGG | 0.625077 | 1.4:-86224078 | None:intergenic |
| ATTGGCTTGAAAACGAAAGA+GGG | 0.626167 | 1.4:+86224021 | MS.gene029314:CDS |
| TCATCTTTATACCCCGTCTG+AGG | 0.634475 | 1.4:+86228197 | MS.gene029314:CDS |
| CAACAACGTTGACATTGCCA+GGG | 0.635659 | 1.4:+86228161 | MS.gene029314:CDS |
| CACAGCTTCCACCTCAGACG+GGG | 0.645540 | 1.4:-86228208 | None:intergenic |
| GGGGTATAAAGATGATACGC+TGG | 0.658506 | 1.4:-86228189 | None:intergenic |
| CTTTCAGGAGCCTAGCAGTG+TGG | 0.658770 | 1.4:+86224944 | MS.gene029314:intron |
| GCATGCACGAGTTGAAACTC+AGG | 0.662565 | 1.4:+86225043 | MS.gene029314:CDS |
| ATTAGAACTGAGTATGACCG+TGG | 0.689159 | 1.4:+86223829 | MS.gene029314:intron |
| TCTGCAAGAACAATTCAACA+AGG | 0.713271 | 1.4:+86226781 | MS.gene029314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAATTACATAAA+AGG | - | chr1.4:86224104-86224123 | None:intergenic | 10.0% |
| !! | CAAAAAAAAATTACATAAAA+GGG | - | chr1.4:86224103-86224122 | None:intergenic | 10.0% |
| !!! | TTTAGAATAAATTGAATTAT+GGG | + | chr1.4:86224423-86224442 | MS.gene029314:intron | 10.0% |
| !!! | TTTATAATTTAAAATGTTGT+TGG | + | chr1.4:86227861-86227880 | MS.gene029314:intron | 10.0% |
| !!! | TTTGTTAATTTTTTTTTTGT+TGG | + | chr1.4:86223976-86223995 | MS.gene029314:intron | 10.0% |
| !! | ATATCATTAAAATTATTAGC+TGG | + | chr1.4:86226857-86226876 | MS.gene029314:intron | 15.0% |
| !! | ATTAATTACCTTAATTCTTT+GGG | + | chr1.4:86227726-86227745 | MS.gene029314:intron | 15.0% |
| !! | TATCATTAAAATTATTAGCT+GGG | + | chr1.4:86226858-86226877 | MS.gene029314:intron | 15.0% |
| !! | TATTAATTACCTTAATTCTT+TGG | + | chr1.4:86227725-86227744 | MS.gene029314:intron | 15.0% |
| !! | TTAGAATAAATTGAATTATG+GGG | + | chr1.4:86224424-86224443 | MS.gene029314:intron | 15.0% |
| !!! | ATATTGATATTGATCTATTT+TGG | + | chr1.4:86225126-86225145 | MS.gene029314:intron | 15.0% |
| !!! | CTTTCTTATTATTTCTTTAA+TGG | + | chr1.4:86226201-86226220 | MS.gene029314:intron | 15.0% |
| !!! | GTTTAGAATAAATTGAATTA+TGG | + | chr1.4:86224422-86224441 | MS.gene029314:intron | 15.0% |
| !!! | TTTTTTATTAGTGTACAAAT+GGG | + | chr1.4:86225550-86225569 | MS.gene029314:intron | 15.0% |
| !!! | TTTTTTTATTAGTGTACAAA+TGG | + | chr1.4:86225549-86225568 | MS.gene029314:intron | 15.0% |
| !! | AAAATTACATAAAAGGGAAT+AGG | - | chr1.4:86224097-86224116 | None:intergenic | 20.0% |
| !! | AAATTGTAATGTATGTTTCA+TGG | - | chr1.4:86224909-86224928 | None:intergenic | 20.0% |
| !! | AACAAAAATCCTAATACATT+TGG | - | chr1.4:86223776-86223795 | None:intergenic | 20.0% |
| !! | AACAAAAATGAGAAAATTAC+AGG | - | chr1.4:86226053-86226072 | None:intergenic | 20.0% |
| !! | AACCCTAATAATAATAATAG+AGG | - | chr1.4:86223928-86223947 | None:intergenic | 20.0% |
| !! | AAGAGTTGAATATGATTTAT+AGG | - | chr1.4:86227758-86227777 | None:intergenic | 20.0% |
| !! | AATAAAAAAGAAAGAAGTGA+TGG | - | chr1.4:86226112-86226131 | None:intergenic | 20.0% |
| !! | AATAAATATGACTATAAGCA+CGG | - | chr1.4:86224867-86224886 | None:intergenic | 20.0% |
| !! | ACAAAAATCCTAATACATTT+GGG | - | chr1.4:86223775-86223794 | None:intergenic | 20.0% |
| !! | ACCCTAATAATAATAATAGA+GGG | - | chr1.4:86223927-86223946 | None:intergenic | 20.0% |
| !! | ATAAAAAAACACCTTACAAA+AGG | - | chr1.4:86225538-86225557 | None:intergenic | 20.0% |
| !! | ATAAAAAAGAAAGAAGTGAT+GGG | - | chr1.4:86226111-86226130 | None:intergenic | 20.0% |
| !! | ATATTAAACATTCCTATGAA+AGG | + | chr1.4:86225499-86225518 | MS.gene029314:intron | 20.0% |
| !! | ATGTTAAAACATTTCTAAAC+CGG | + | chr1.4:86226004-86226023 | MS.gene029314:intron | 20.0% |
| !! | ATTAGTTAAATTACAGAGAA+AGG | + | chr1.4:86225905-86225924 | MS.gene029314:intron | 20.0% |
| !! | CTAAACTTAAAATCTATTGT+TGG | + | chr1.4:86225476-86225495 | MS.gene029314:intron | 20.0% |
| !! | TGTTAAATAGATACACAAAA+TGG | + | chr1.4:86227555-86227574 | MS.gene029314:intron | 20.0% |
| !! | TTAAACAGAAAATAATTGCA+CGG | + | chr1.4:86226532-86226551 | MS.gene029314:intron | 20.0% |
| !! | TTAATTACCTTAATTCTTTG+GGG | + | chr1.4:86227727-86227746 | MS.gene029314:intron | 20.0% |
| !!! | AGAATATCAATATGATTTGT+AGG | - | chr1.4:86227782-86227801 | None:intergenic | 20.0% |
| !!! | ATTTATTTCCTTTTTCATTC+TGG | + | chr1.4:86226638-86226657 | MS.gene029314:intron | 20.0% |
| !!! | CAACAATAGATTTTAAGTTT+AGG | - | chr1.4:86225478-86225497 | None:intergenic | 20.0% |
| !!! | TACCATTTATTTTTTCTCTT+TGG | + | chr1.4:86225664-86225683 | MS.gene029314:intron | 20.0% |
| ! | AAATTCTTGTCAAATATGTC+CGG | - | chr1.4:86226026-86226045 | None:intergenic | 25.0% |
| ! | AATAGAATGTTGTATGTAGT+TGG | + | chr1.4:86225083-86225102 | MS.gene029314:intron | 25.0% |
| ! | AGACAAAAATATACAAGAGA+TGG | - | chr1.4:86227816-86227835 | None:intergenic | 25.0% |
| ! | AGTTAGAATATATTCTCAGT+AGG | - | chr1.4:86228108-86228127 | None:intergenic | 25.0% |
| ! | ATATGCAATTGAAGCTATTA+AGG | + | chr1.4:86223894-86223913 | MS.gene029314:CDS | 25.0% |
| ! | ATTAAAATTATTAGCTGGGA+TGG | + | chr1.4:86226862-86226881 | MS.gene029314:intron | 25.0% |
| ! | CAAAAATCCTAATACATTTG+GGG | - | chr1.4:86223774-86223793 | None:intergenic | 25.0% |
| ! | GAAATAATAAGAAAGAGTGA+AGG | - | chr1.4:86226196-86226215 | None:intergenic | 25.0% |
| ! | GCCCTCTATTATTATTATTA+GGG | + | chr1.4:86223923-86223942 | MS.gene029314:intron | 25.0% |
| ! | GTTAGAATATATTCTCAGTA+GGG | - | chr1.4:86228107-86228126 | None:intergenic | 25.0% |
| ! | TAGATGGAATATATACTTAC+AGG | - | chr1.4:86225749-86225768 | None:intergenic | 25.0% |
| ! | TGCATATTCTGAATGTTTAA+TGG | + | chr1.4:86225405-86225424 | MS.gene029314:intron | 25.0% |
| ! | TGCCAAAGAGAAAAAATAAA+TGG | - | chr1.4:86225669-86225688 | None:intergenic | 25.0% |
| ! | TGCCCTCTATTATTATTATT+AGG | + | chr1.4:86223922-86223941 | MS.gene029314:intron | 25.0% |
| ! | TTAGAATATATTCTCAGTAG+GGG | - | chr1.4:86228106-86228125 | None:intergenic | 25.0% |
| ! | TTGCTTAAAGATTATCTTTC+AGG | + | chr1.4:86227910-86227929 | MS.gene029314:intron | 25.0% |
| ! | TTGTAAAAGATACTTACTAG+TGG | + | chr1.4:86225605-86225624 | MS.gene029314:intron | 25.0% |
| !! | AAAAGAAAGTGTAACATACA+AGG | - | chr1.4:86225879-86225898 | None:intergenic | 25.0% |
| !! | ATTGATTTATTATGTTGTGC+AGG | + | chr1.4:86227973-86227992 | MS.gene029314:intron | 25.0% |
| !! | TAATTTTCCCCAAATGTATT+AGG | + | chr1.4:86223764-86223783 | MS.gene029314:intron | 25.0% |
| !! | TATGTTACACTTTCTTTTCT+GGG | + | chr1.4:86225881-86225900 | MS.gene029314:intron | 25.0% |
| !! | TCAGAATTACATCTAAAACT+GGG | - | chr1.4:86224806-86224825 | None:intergenic | 25.0% |
| !! | TGTTATTTGCAACAGTATTA+AGG | - | chr1.4:86227700-86227719 | None:intergenic | 25.0% |
| !! | TTCAGAATTACATCTAAAAC+TGG | - | chr1.4:86224807-86224826 | None:intergenic | 25.0% |
| !!! | ATCTCTTGTATATTTTTGTC+TGG | + | chr1.4:86227815-86227834 | MS.gene029314:intron | 25.0% |
| !!! | GGTTTTTAACTATCTGTATT+CGG | + | chr1.4:86223944-86223963 | MS.gene029314:intron | 25.0% |
| !!! | GTATTAGGATTTTTGTTTCT+AGG | + | chr1.4:86223779-86223798 | MS.gene029314:intron | 25.0% |
| !!! | GTTTTTAACTATCTGTATTC+GGG | + | chr1.4:86223945-86223964 | MS.gene029314:intron | 25.0% |
| !!! | TATTTTGATTTTGTAGGATC+AGG | + | chr1.4:86226561-86226580 | MS.gene029314:intron | 25.0% |
| !!! | TTCACAAATACTTTTGAGAA+AGG | - | chr1.4:86226142-86226161 | None:intergenic | 25.0% |
| !!! | TTTATTTTTCACAGAATCAC+AGG | + | chr1.4:86225149-86225168 | MS.gene029314:intron | 25.0% |
| !!! | TTTCTCATTTTTGTTTCACT+TGG | + | chr1.4:86226058-86226077 | MS.gene029314:intron | 25.0% |
| AAAAGAATTTGGGCTCTATT+TGG | + | chr1.4:86227393-86227412 | MS.gene029314:intron | 30.0% | |
| AACACAGAAAATGAGTCAAA+AGG | - | chr1.4:86225808-86225827 | None:intergenic | 30.0% | |
| AAGATTATCTTTCAGGATAG+AGG | + | chr1.4:86227917-86227936 | MS.gene029314:intron | 30.0% | |
| AATTGAATTATGGGGATATC+TGG | + | chr1.4:86224432-86224451 | MS.gene029314:intron | 30.0% | |
| AGCTAAGAAGTTATATACCA+TGG | - | chr1.4:86225263-86225282 | None:intergenic | 30.0% | |
| ATGAAAATCTGCCCTAAAAA+GGG | - | chr1.4:86224334-86224353 | None:intergenic | 30.0% | |
| ATTGAGTCTCAAATCCTAAT+TGG | - | chr1.4:86226457-86226476 | None:intergenic | 30.0% | |
| CTATAAGGAGACTATTAAGA+AGG | - | chr1.4:86227164-86227183 | None:intergenic | 30.0% | |
| GAAGACCTAGAAAAACTATA+AGG | - | chr1.4:86227179-86227198 | None:intergenic | 30.0% | |
| GACATGAAAACAAGTGAATT+TGG | + | chr1.4:86227949-86227968 | MS.gene029314:intron | 30.0% | |
| GTCATCTATAGTAGAAAGAT+GGG | - | chr1.4:86227331-86227350 | None:intergenic | 30.0% | |
| TAGAATATATTCTCAGTAGG+GGG | - | chr1.4:86228105-86228124 | None:intergenic | 30.0% | |
| TATATATTCCATCTAAGCCA+TGG | + | chr1.4:86225754-86225773 | MS.gene029314:intron | 30.0% | |
| TCATCTATAGTAGAAAGATG+GGG | - | chr1.4:86227330-86227349 | None:intergenic | 30.0% | |
| TCTCCATTTCTCAAAACAAA+TGG | - | chr1.4:86227524-86227543 | None:intergenic | 30.0% | |
| TGTGTTAAAATTCCACTTTC+AGG | + | chr1.4:86224929-86224948 | MS.gene029314:intron | 30.0% | |
| TTCTACCATCTTTCTACTAT+AGG | + | chr1.4:86227299-86227318 | MS.gene029314:intron | 30.0% | |
| TTCTGCGTCTAAAAGAATTT+GGG | + | chr1.4:86227383-86227402 | MS.gene029314:intron | 30.0% | |
| TTCTTCTGTACTTTCACATT+AGG | + | chr1.4:86228131-86228150 | MS.gene029314:intron | 30.0% | |
| TTCTTGTTCAAACTAGTTCA+TGG | + | chr1.4:86226369-86226388 | MS.gene029314:intron | 30.0% | |
| TTGAGTCTCAAATCCTAATT+GGG | - | chr1.4:86226456-86226475 | None:intergenic | 30.0% | |
| TTTCTGCGTCTAAAAGAATT+TGG | + | chr1.4:86227382-86227401 | MS.gene029314:intron | 30.0% | |
| ! | AAATTCTTTTAGACGCAGAA+AGG | - | chr1.4:86227383-86227402 | None:intergenic | 30.0% |
| ! | ACTGCTGTTTGATAATTTGT+TGG | - | chr1.4:86224584-86224603 | None:intergenic | 30.0% |
| ! | AGTCTCCTTATAGTTTTTCT+AGG | + | chr1.4:86227171-86227190 | MS.gene029314:intron | 30.0% |
| ! | ATGGAAATTGATGATCACAT+TGG | + | chr1.4:86224975-86224994 | MS.gene029314:CDS | 30.0% |
| ! | ATGTTACACTTTCTTTTCTG+GGG | + | chr1.4:86225882-86225901 | MS.gene029314:intron | 30.0% |
| ! | CACGCATATTTTTCTTACTT+GGG | - | chr1.4:86224371-86224390 | None:intergenic | 30.0% |
| ! | GAGAATGATGCTATAGTTTT+AGG | + | chr1.4:86226230-86226249 | MS.gene029314:intron | 30.0% |
| ! | GTAAATACATCTTTTCTGTG+CGG | + | chr1.4:86226286-86226305 | MS.gene029314:intron | 30.0% |
| ! | GTATGTTACACTTTCTTTTC+TGG | + | chr1.4:86225880-86225899 | MS.gene029314:intron | 30.0% |
| !! | ATCAATTCTGAAGCAAGTTA+TGG | + | chr1.4:86228030-86228049 | MS.gene029314:CDS | 30.0% |
| !! | GGTTTTTCAATAGAACATCA+TGG | - | chr1.4:86227110-86227129 | None:intergenic | 30.0% |
| !! | TGCATTAATTTGTCTGTGAT+GGG | - | chr1.4:86226503-86226522 | None:intergenic | 30.0% |
| !!! | CATGGGTATTTTGATTTTGT+AGG | + | chr1.4:86226555-86226574 | MS.gene029314:intron | 30.0% |
| !!! | TTTTTTGTTGGATTTCAGCT+TGG | + | chr1.4:86223988-86224007 | MS.gene029314:intron | 30.0% |
| AAAACTGGGTATAACACGTT+TGG | - | chr1.4:86224792-86224811 | None:intergenic | 35.0% | |
| AAATTAGACTCAGGTGGTTT+GGG | - | chr1.4:86227281-86227300 | None:intergenic | 35.0% | |
| AACTGGAAGTAACATGCATT+TGG | - | chr1.4:86228076-86228095 | None:intergenic | 35.0% | |
| AAGTTTGTGGACATTTCACA+TGG | - | chr1.4:86224743-86224762 | None:intergenic | 35.0% | |
| AATTACAGAGAAAGGACATG+TGG | + | chr1.4:86225913-86225932 | MS.gene029314:intron | 35.0% | |
| AGAAAATAATTGCACGGCAT+GGG | + | chr1.4:86226538-86226557 | MS.gene029314:intron | 35.0% | |
| AGATATTACACTGATCCTTC+TGG | + | chr1.4:86226698-86226717 | MS.gene029314:intron | 35.0% | |
| AGATGGTAGAAATTAGACTC+AGG | - | chr1.4:86227290-86227309 | None:intergenic | 35.0% | |
| AGGAAACATTTAGTGGTAGT+TGG | + | chr1.4:86226421-86226440 | MS.gene029314:intron | 35.0% | |
| ATAAAAGAGAGAGAGAGGAA+AGG | - | chr1.4:86223703-86223722 | None:intergenic | 35.0% | |
| CATTATTAACCTCACCATAG+CGG | - | chr1.4:86224498-86224517 | None:intergenic | 35.0% | |
| CCAATAGTCCAGAATGAAAA+AGG | - | chr1.4:86226649-86226668 | None:intergenic | 35.0% | |
| CCACTAAATGTTTCCTGTTA+TGG | - | chr1.4:86226417-86226436 | None:intergenic | 35.0% | |
| CCATAACAGGAAACATTTAG+TGG | + | chr1.4:86226414-86226433 | MS.gene029314:intron | 35.0% | |
| CGTCATCTATAGTAGAAAGA+TGG | - | chr1.4:86227332-86227351 | None:intergenic | 35.0% | |
| CTCCTTACTACAAAATCCAT+AGG | + | chr1.4:86227240-86227259 | MS.gene029314:intron | 35.0% | |
| GATGAAAATCTGCCCTAAAA+AGG | - | chr1.4:86224335-86224354 | None:intergenic | 35.0% | |
| GGAATATATACTTACAGGCT+AGG | - | chr1.4:86225744-86225763 | None:intergenic | 35.0% | |
| GGATATACATATGCAAAGAG+TGG | + | chr1.4:86225970-86225989 | MS.gene029314:intron | 35.0% | |
| GTAACAACTCTCCTCATTAT+GGG | - | chr1.4:86227619-86227638 | None:intergenic | 35.0% | |
| GTGTAACATACAAGGAACAA+CGG | - | chr1.4:86225871-86225890 | None:intergenic | 35.0% | |
| GTTTCCTGTTATGGTTCAAA+AGG | - | chr1.4:86226408-86226427 | None:intergenic | 35.0% | |
| TAAAAGAGAGAGAGAGGAAA+GGG | - | chr1.4:86223702-86223721 | None:intergenic | 35.0% | |
| TAACAACTCTCCTCATTATG+GGG | - | chr1.4:86227618-86227637 | None:intergenic | 35.0% | |
| TAATAAGCTGGAGAAAGACA+TGG | - | chr1.4:86227131-86227150 | None:intergenic | 35.0% | |
| TAGCACCTATAGTAGAAAGA+TGG | - | chr1.4:86227307-86227326 | None:intergenic | 35.0% | |
| TAGCAGTGTGGAGAAAATTA+TGG | + | chr1.4:86224956-86224975 | MS.gene029314:CDS | 35.0% | |
| TCTCCAGCTTATTAATCTCT+AGG | + | chr1.4:86227137-86227156 | MS.gene029314:intron | 35.0% | |
| TCTGCAAGAACAATTCAACA+AGG | + | chr1.4:86226781-86226800 | MS.gene029314:CDS | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr1.4:86224224-86224243 | MS.gene029314:intron | 35.0% | |
| TGAGTCTCAAATCCTAATTG+GGG | - | chr1.4:86226455-86226474 | None:intergenic | 35.0% | |
| TGCTTACAGTGCTTTCTTTA+AGG | + | chr1.4:86225311-86225330 | MS.gene029314:intron | 35.0% | |
| TGTATTTACGCACACATCAA+TGG | - | chr1.4:86226275-86226294 | None:intergenic | 35.0% | |
| TTAACTATCTGTATTCGGGT+TGG | + | chr1.4:86223949-86223968 | MS.gene029314:intron | 35.0% | |
| TTCAGAATATGCAACACACA+AGG | - | chr1.4:86225398-86225417 | None:intergenic | 35.0% | |
| ! | AAGAACAGTCGCAATTTTTC+TGG | + | chr1.4:86225949-86225968 | MS.gene029314:intron | 35.0% |
| ! | ATAATTTTCTCCACACTGCT+AGG | - | chr1.4:86224957-86224976 | None:intergenic | 35.0% |
| ! | GACCTATGGATTTTGTAGTA+AGG | - | chr1.4:86227245-86227264 | None:intergenic | 35.0% |
| ! | GCACGCATATTTTTCTTACT+TGG | - | chr1.4:86224372-86224391 | None:intergenic | 35.0% |
| ! | TAATTTGTCTGTGATGGGAA+TGG | - | chr1.4:86226498-86226517 | None:intergenic | 35.0% |
| !! | ATACTTACTAGTGGTGTTGT+TGG | + | chr1.4:86225614-86225633 | MS.gene029314:intron | 35.0% |
| !! | ATTGGCTTGAAAACGAAAGA+GGG | + | chr1.4:86224021-86224040 | MS.gene029314:CDS | 35.0% |
| !! | ATTTTGGCAATGCAATGCAA+AGG | + | chr1.4:86226724-86226743 | MS.gene029314:CDS | 35.0% |
| !! | CCTTTTTCATTCTGGACTAT+TGG | + | chr1.4:86226646-86226665 | MS.gene029314:intron | 35.0% |
| !! | CTGCATTAATTTGTCTGTGA+TGG | - | chr1.4:86226504-86226523 | None:intergenic | 35.0% |
| !! | TTTTGTTTCACTTGGTTCCT+TGG | + | chr1.4:86226066-86226085 | MS.gene029314:intron | 35.0% |
| !!! | GCTCCATTTGTTTTGAGAAA+TGG | + | chr1.4:86227518-86227537 | MS.gene029314:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr1.4:86224225-86224244 | None:intergenic | 35.0% |
| AACAACCCACTGTAAGAACA+TGG | - | chr1.4:86226810-86226829 | None:intergenic | 40.0% | |
| AACACCTTACAAAAGGACAG+TGG | - | chr1.4:86225531-86225550 | None:intergenic | 40.0% | |
| AACCTGAAACAAACGTCCTT+CGG | - | chr1.4:86223872-86223891 | None:intergenic | 40.0% | |
| ACACTGCATTGTTCAACTCT+CGG | + | chr1.4:86226320-86226339 | MS.gene029314:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr1.4:86224218-86224237 | MS.gene029314:intron | 40.0% | |
| ACATGACTCAGAAGTAACCA+TGG | - | chr1.4:86225774-86225793 | None:intergenic | 40.0% | |
| ACGCAGAAAGGATCTTAAGA+GGG | - | chr1.4:86227371-86227390 | None:intergenic | 40.0% | |
| ACTAGTTCATGGTAGCAACT+TGG | + | chr1.4:86226380-86226399 | MS.gene029314:intron | 40.0% | |
| AGAAGTAACCATGGCTTAGA+TGG | - | chr1.4:86225765-86225784 | None:intergenic | 40.0% | |
| AGCAAAGATCCAAGAATTCC+AGG | - | chr1.4:86227641-86227660 | None:intergenic | 40.0% | |
| AGGTATCCATGTTCTTACAG+TGG | + | chr1.4:86226801-86226820 | MS.gene029314:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | - | chr1.4:86227229-86227248 | None:intergenic | 40.0% | |
| AGTCAAATCACTAGAGGTAG+GGG | - | chr1.4:86227201-86227220 | None:intergenic | 40.0% | |
| ATAAGGAGAGACACTCCAAA+TGG | - | chr1.4:86225699-86225718 | None:intergenic | 40.0% | |
| ATTAGAACTGAGTATGACCG+TGG | + | chr1.4:86223829-86223848 | MS.gene029314:intron | 40.0% | |
| CAATGCAATGCAAAGGCTAT+TGG | + | chr1.4:86226731-86226750 | MS.gene029314:CDS | 40.0% | |
| CACACATCAATGGTAAGAGT+AGG | - | chr1.4:86226265-86226284 | None:intergenic | 40.0% | |
| CAGAAAATAATTGCACGGCA+TGG | + | chr1.4:86226537-86226556 | MS.gene029314:intron | 40.0% | |
| CAGAATCACAGGTTCTCTTA+TGG | + | chr1.4:86225160-86225179 | MS.gene029314:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr1.4:86224219-86224238 | MS.gene029314:intron | 40.0% | |
| CAGTGGCTTAATCCTTTCAT+AGG | - | chr1.4:86225514-86225533 | None:intergenic | 40.0% | |
| CGCTATGGTGAGGTTAATAA+TGG | + | chr1.4:86224496-86224515 | MS.gene029314:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1.4:86224250-86224269 | MS.gene029314:intron | 40.0% | |
| CTTATCTCACTAAGTGGAGT+CGG | + | chr1.4:86227065-86227084 | MS.gene029314:intron | 40.0% | |
| GAAATTAGACTCAGGTGGTT+TGG | - | chr1.4:86227282-86227301 | None:intergenic | 40.0% | |
| GAAGCAAGTTATGGAAGAGA+AGG | + | chr1.4:86228039-86228058 | MS.gene029314:CDS | 40.0% | |
| GAATAGGTACATACCAGTAG+AGG | - | chr1.4:86224081-86224100 | None:intergenic | 40.0% | |
| GAGTCAAATCACTAGAGGTA+GGG | - | chr1.4:86227202-86227221 | None:intergenic | 40.0% | |
| GAGTCTCAAATCCTAATTGG+GGG | - | chr1.4:86226454-86226473 | None:intergenic | 40.0% | |
| GAGTTGTTACCTGGAATTCT+TGG | + | chr1.4:86227629-86227648 | MS.gene029314:intron | 40.0% | |
| GCCCTAAAAAGGGCAAAAAA+GGG | - | chr1.4:86224324-86224343 | None:intergenic | 40.0% | |
| GGACCTAGAGATTAATAAGC+TGG | - | chr1.4:86227143-86227162 | None:intergenic | 40.0% | |
| GGTAACAACTCTCCTCATTA+TGG | - | chr1.4:86227620-86227639 | None:intergenic | 40.0% | |
| GGTATCCATGTTCTTACAGT+GGG | + | chr1.4:86226802-86226821 | MS.gene029314:intron | 40.0% | |
| GTGAAATGTCCACAAACTTG+CGG | + | chr1.4:86224744-86224763 | MS.gene029314:intron | 40.0% | |
| GTGCATGCAGATTCAAAACA+TGG | + | chr1.4:86226974-86226993 | MS.gene029314:intron | 40.0% | |
| GTTGTAGACTCTACAGTCAT+CGG | - | chr1.4:86225190-86225209 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr1.4:86224174-86224193 | MS.gene029314:intron | 40.0% | |
| TAACAGTCAGTTTAGCAGTG+CGG | + | chr1.4:86224531-86224550 | MS.gene029314:intron | 40.0% | |
| TAATGAGGAGAGTTGTTACC+TGG | + | chr1.4:86227620-86227639 | MS.gene029314:intron | 40.0% | |
| TATTAGCTGGGATGGTAAAG+TGG | + | chr1.4:86226870-86226889 | MS.gene029314:intron | 40.0% | |
| TCAGCAGTCACTAGATGATA+CGG | + | chr1.4:86226594-86226613 | MS.gene029314:intron | 40.0% | |
| TGCAAAGAGTGGTTAATGAG+TGG | + | chr1.4:86225981-86226000 | MS.gene029314:intron | 40.0% | |
| TGCCCTAAAAAGGGCAAAAA+AGG | - | chr1.4:86224325-86224344 | None:intergenic | 40.0% | |
| TGGTAGAAATTAGACTCAGG+TGG | - | chr1.4:86227287-86227306 | None:intergenic | 40.0% | |
| ! | AAGATGGCATGTTACTTCCA+AGG | - | chr1.4:86226086-86226105 | None:intergenic | 40.0% |
| ! | ATCTCCATTTTCTCCACAGT+TGG | - | chr1.4:86226937-86226956 | None:intergenic | 40.0% |
| ! | CATGCAAGTTCACAGGTTTT+GGG | - | chr1.4:86225337-86225356 | None:intergenic | 40.0% |
| ! | GCATGCACTAAATTTGAGAC+TGG | - | chr1.4:86226962-86226981 | None:intergenic | 40.0% |
| ! | TAAGCCACTGTCCTTTTGTA+AGG | + | chr1.4:86225524-86225543 | MS.gene029314:intron | 40.0% |
| ! | TCATGCAAGTTCACAGGTTT+TGG | - | chr1.4:86225338-86225357 | None:intergenic | 40.0% |
| ! | TTAGGGCAGATTTTCATCGA+GGG | + | chr1.4:86224128-86224147 | MS.gene029314:intron | 40.0% |
| !! | AATGCAAAGGCTATTGGTTC+AGG | + | chr1.4:86226737-86226756 | MS.gene029314:CDS | 40.0% |
| !! | GAGAAAAAGTGTTGACTCCA+CGG | - | chr1.4:86223849-86223868 | None:intergenic | 40.0% |
| !! | GATTGGCTTGAAAACGAAAG+AGG | + | chr1.4:86224020-86224039 | MS.gene029314:CDS | 40.0% |
| !! | TTTAGGGCAGATTTTCATCG+AGG | + | chr1.4:86224127-86224146 | MS.gene029314:intron | 40.0% |
| !!! | GCCCTTTTTTGCCCTTTTTA+GGG | + | chr1.4:86224320-86224339 | MS.gene029314:intron | 40.0% |
| !!! | TGCCCTTTTTTGCCCTTTTT+AGG | + | chr1.4:86224319-86224338 | MS.gene029314:intron | 40.0% |
| AAATGTCCACAAACTTGCGG+TGG | + | chr1.4:86224747-86224766 | MS.gene029314:intron | 45.0% | |
| AACCCCAAAAGTGGGATAGA+GGG | - | chr1.4:86224610-86224629 | None:intergenic | 45.0% | |
| AAGCGATCATGCAAGTTCAC+AGG | - | chr1.4:86225344-86225363 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | - | chr1.4:86227226-86227245 | None:intergenic | 45.0% | |
| AATGTCCACAAACTTGCGGT+GGG | + | chr1.4:86224748-86224767 | MS.gene029314:intron | 45.0% | |
| ACCTGAAACAAACGTCCTTC+GGG | - | chr1.4:86223871-86223890 | None:intergenic | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | - | chr1.4:86227225-86227244 | None:intergenic | 45.0% | |
| CAACAACGTTGACATTGCCA+GGG | + | chr1.4:86228161-86228180 | MS.gene029314:CDS | 45.0% | |
| CATTGCCAAAATGTGCCAGA+AGG | - | chr1.4:86226716-86226735 | None:intergenic | 45.0% | |
| CCACTTAGTGAGATAAGGCT+TGG | - | chr1.4:86227062-86227081 | None:intergenic | 45.0% | |
| CGACTCCACTTAGTGAGATA+AGG | - | chr1.4:86227067-86227086 | None:intergenic | 45.0% | |
| CGCAGAAAGGATCTTAAGAG+GGG | - | chr1.4:86227370-86227389 | None:intergenic | 45.0% | |
| CTCTCCAACTGTGGAGAAAA+TGG | + | chr1.4:86226930-86226949 | MS.gene029314:intron | 45.0% | |
| CTGGCAATGTCAACGTTGTT+GGG | - | chr1.4:86228162-86228181 | None:intergenic | 45.0% | |
| CTTGAAAACGAAAGAGGGTG+TGG | + | chr1.4:86224026-86224045 | MS.gene029314:CDS | 45.0% | |
| GACGCAGAAAGGATCTTAAG+AGG | - | chr1.4:86227372-86227391 | None:intergenic | 45.0% | |
| GACTACGCACATGTTTGTCT+TGG | + | chr1.4:86224657-86224676 | MS.gene029314:intron | 45.0% | |
| GCATGTAGAGAGAAGACCTA+TGG | - | chr1.4:86227259-86227278 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1.4:86224249-86224268 | MS.gene029314:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1.4:86224246-86224265 | MS.gene029314:intron | 45.0% | |
| GGAAGGTGATGAAGAATCCA+TGG | + | chr1.4:86225243-86225262 | MS.gene029314:CDS | 45.0% | |
| GGAGTCAAATCACTAGAGGT+AGG | - | chr1.4:86227203-86227222 | None:intergenic | 45.0% | |
| GGCGAAACCCCAAAGAATTA+AGG | - | chr1.4:86227737-86227756 | None:intergenic | 45.0% | |
| GGGGTATAAAGATGATACGC+TGG | - | chr1.4:86228192-86228211 | None:intergenic | 45.0% | |
| GTGCGATAAAAGAGAGAGAG+AGG | - | chr1.4:86223708-86223727 | None:intergenic | 45.0% | |
| TACGCACATGTTTGTCTTGG+TGG | + | chr1.4:86224660-86224679 | MS.gene029314:intron | 45.0% | |
| TCATCTTTATACCCCGTCTG+AGG | + | chr1.4:86228197-86228216 | MS.gene029314:CDS | 45.0% | |
| TCATGTGACTGTAAGGTCAC+AGG | + | chr1.4:86224181-86224200 | MS.gene029314:intron | 45.0% | |
| TTCTCCATTCTCTCCTCGAA+TGG | + | chr1.4:86227580-86227599 | MS.gene029314:intron | 45.0% | |
| TTGGCATCTTACCCCCAATT+AGG | + | chr1.4:86226440-86226459 | MS.gene029314:intron | 45.0% | |
| ! | ACACGTTTGGATGTGCGTTT+TGG | - | chr1.4:86224779-86224798 | None:intergenic | 45.0% |
| ! | CATTTTCTCCACAGTTGGAG+AGG | - | chr1.4:86226932-86226951 | None:intergenic | 45.0% |
| ! | CCAAGCCTTATCTCACTAAG+TGG | + | chr1.4:86227059-86227078 | MS.gene029314:intron | 45.0% |
| ! | CTGATCCTTCTGGCACATTT+TGG | + | chr1.4:86226708-86226727 | MS.gene029314:CDS | 45.0% |
| ! | GGCACCTTTTGAACCATAAC+AGG | + | chr1.4:86226401-86226420 | MS.gene029314:intron | 45.0% |
| ! | TAGGGCAGATTTTCATCGAG+GGG | + | chr1.4:86224129-86224148 | MS.gene029314:intron | 45.0% |
| ! | TCATCCCTCTATCCCACTTT+TGG | + | chr1.4:86224603-86224622 | MS.gene029314:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1.4:86224214-86224233 | None:intergenic | 45.0% |
| ! | TTTTCATCGAGGGGTAACCT+TGG | + | chr1.4:86224138-86224157 | MS.gene029314:intron | 45.0% |
| !! | AAAGAAGTGATGGGCGAAGA+TGG | - | chr1.4:86226102-86226121 | None:intergenic | 45.0% |
| !! | ATCCCTCTATCCCACTTTTG+GGG | + | chr1.4:86224605-86224624 | MS.gene029314:intron | 45.0% |
| !! | CATCCCTCTATCCCACTTTT+GGG | + | chr1.4:86224604-86224623 | MS.gene029314:intron | 45.0% |
| !! | GCTATTGGTTCAGGATCAGA+AGG | + | chr1.4:86226746-86226765 | MS.gene029314:CDS | 45.0% |
| !!! | GTCAACACTTTTTCTCCCGA+AGG | + | chr1.4:86223853-86223872 | MS.gene029314:CDS | 45.0% |
| !!! | AATTTTTTTTTGTTAATTTA+GGG | + | chr1.4:86224111-86224130 | MS.gene029314:intron | 5.0% |
| !!! | TAATTTTTTTTTGTTAATTT+AGG | + | chr1.4:86224110-86224129 | MS.gene029314:intron | 5.0% |
| AAAATAGCGCCGCTATGGTG+AGG | + | chr1.4:86224486-86224505 | MS.gene029314:intron | 50.0% | |
| AAGGGCAAAAAAGGGCAACC+CGG | - | chr1.4:86224316-86224335 | None:intergenic | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+TGG | + | chr1.4:86224193-86224212 | MS.gene029314:intron | 50.0% | |
| AGGATGCAGACCCCATAATG+AGG | + | chr1.4:86227605-86227624 | MS.gene029314:intron | 50.0% | |
| ATCACAGCTTCCACCTCAGA+CGG | - | chr1.4:86228213-86228232 | None:intergenic | 50.0% | |
| ATGTCCACAAACTTGCGGTG+GGG | + | chr1.4:86224749-86224768 | MS.gene029314:intron | 50.0% | |
| ATTGCTGGCCATGACGAGAA+TGG | + | chr1.4:86225717-86225736 | MS.gene029314:CDS | 50.0% | |
| CAACCCCAAAAGTGGGATAG+AGG | - | chr1.4:86224611-86224630 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1.4:86224158-86224177 | None:intergenic | 50.0% | |
| CAGCTTGGATCAACTGCGAT+TGG | + | chr1.4:86224003-86224022 | MS.gene029314:intron | 50.0% | |
| CATTCTCTCCTCGAATGGAG+AGG | + | chr1.4:86227585-86227604 | MS.gene029314:intron | 50.0% | |
| CCAACAACGTTGACATTGCC+AGG | + | chr1.4:86228160-86228179 | MS.gene029314:CDS | 50.0% | |
| CCTGGCAATGTCAACGTTGT+TGG | - | chr1.4:86228163-86228182 | None:intergenic | 50.0% | |
| CTCTCCATTCGAGGAGAGAA+TGG | - | chr1.4:86227587-86227606 | None:intergenic | 50.0% | |
| CTTTGGCAGTCTCGACCATT+TGG | + | chr1.4:86225681-86225700 | MS.gene029314:intron | 50.0% | |
| GAGGGGAGTCAAATCACTAG+AGG | - | chr1.4:86227207-86227226 | None:intergenic | 50.0% | |
| GCACATGTTTGTCTTGGTGG+TGG | + | chr1.4:86224663-86224682 | MS.gene029314:intron | 50.0% | |
| GCGTAGTCAATCCTGCATTG+TGG | - | chr1.4:86224645-86224664 | None:intergenic | 50.0% | |
| GCGTATTACTTCGCCTCTAC+TGG | + | chr1.4:86224065-86224084 | MS.gene029314:CDS | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | - | chr1.4:86227224-86227243 | None:intergenic | 50.0% | |
| GTCAATCCTGCATTGTGGTG+CGG | - | chr1.4:86224640-86224659 | None:intergenic | 50.0% | |
| TATAGATGACGAACCCTCGC+TGG | + | chr1.4:86227341-86227360 | MS.gene029314:intron | 50.0% | |
| TCAGTAGGGGGACAAACAAC+TGG | - | chr1.4:86228093-86228112 | None:intergenic | 50.0% | |
| TCAGTTTAGCAGTGCGGAGT+GGG | + | chr1.4:86224537-86224556 | MS.gene029314:intron | 50.0% | |
| TCCCGAAGGACGTTTGTTTC+AGG | + | chr1.4:86223867-86223886 | MS.gene029314:CDS | 50.0% | |
| TCTCGTCATGGCCAGCAATA+AGG | - | chr1.4:86225716-86225735 | None:intergenic | 50.0% | |
| TCTTTATACCCCGTCTGAGG+TGG | + | chr1.4:86228200-86228219 | MS.gene029314:CDS | 50.0% | |
| ! | CACATTGGCTGTGCAATGAG+TGG | + | chr1.4:86224990-86225009 | MS.gene029314:CDS | 50.0% |
| ! | GCATGCACGAGTTGAAACTC+AGG | + | chr1.4:86225043-86225062 | MS.gene029314:CDS | 50.0% |
| ! | GGAGTGTCTCTCCTTATTGC+TGG | + | chr1.4:86225702-86225721 | MS.gene029314:CDS | 50.0% |
| !! | CTGGACTATTGGTCTTGCTG+AGG | + | chr1.4:86226657-86226676 | MS.gene029314:intron | 50.0% |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr1.4:86224290-86224309 | None:intergenic | 55.0% | |
| AGCGCAAAATAGCGCCGCTA+TGG | + | chr1.4:86224481-86224500 | MS.gene029314:intron | 55.0% | |
| AGTTTAGCAGTGCGGAGTGG+GGG | + | chr1.4:86224539-86224558 | MS.gene029314:intron | 55.0% | |
| ATCACCTTCCCCAAAGCGCA+AGG | - | chr1.4:86225233-86225252 | None:intergenic | 55.0% | |
| ATGATACGCTGGAGCAACCC+TGG | - | chr1.4:86228181-86228200 | None:intergenic | 55.0% | |
| CACTGCTAGGCTCCTGAAAG+TGG | - | chr1.4:86224944-86224963 | None:intergenic | 55.0% | |
| CAGTTTAGCAGTGCGGAGTG+GGG | + | chr1.4:86224538-86224557 | MS.gene029314:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr1.4:86224289-86224308 | None:intergenic | 55.0% | |
| CTTTCAGGAGCCTAGCAGTG+TGG | + | chr1.4:86224944-86224963 | MS.gene029314:intron | 55.0% | |
| GAGCGGTCAACCCCAAAAGT+GGG | - | chr1.4:86224618-86224637 | None:intergenic | 55.0% | |
| GGCTAGGTCCATTCTCGTCA+TGG | - | chr1.4:86225728-86225747 | None:intergenic | 55.0% | |
| GTCAGTTTAGCAGTGCGGAG+TGG | + | chr1.4:86224536-86224555 | MS.gene029314:intron | 55.0% | |
| GTCTGCATCCTCTCCATTCG+AGG | - | chr1.4:86227596-86227615 | None:intergenic | 55.0% | |
| TCACAGCTTCCACCTCAGAC+GGG | - | chr1.4:86228212-86228231 | None:intergenic | 55.0% | |
| TGTCCACAAACTTGCGGTGG+GGG | + | chr1.4:86224750-86224769 | MS.gene029314:intron | 55.0% | |
| TTAAGAGGGGTGACCAGCGA+GGG | - | chr1.4:86227357-86227376 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1.4:86224294-86224313 | MS.gene029314:intron | 55.0% |
| !! | GTGACCTAGCCTTGCGCTTT+GGG | + | chr1.4:86225221-86225240 | MS.gene029314:CDS | 55.0% |
| !! | TGACCTAGCCTTGCGCTTTG+GGG | + | chr1.4:86225222-86225241 | MS.gene029314:CDS | 55.0% |
| !! | TGTGACCTAGCCTTGCGCTT+TGG | + | chr1.4:86225220-86225239 | MS.gene029314:CDS | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1.4:86224147-86224166 | MS.gene029314:intron | 60.0% | |
| CACAGCTTCCACCTCAGACG+GGG | - | chr1.4:86228211-86228230 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | - | chr1.4:86224264-86224283 | None:intergenic | 60.0% | |
| CATACGCAGGGTCCAGGAAG+GGG | - | chr1.4:86224277-86224296 | None:intergenic | 60.0% | |
| CTCCACAGTTGGAGAGGAGC+TGG | - | chr1.4:86226926-86226945 | None:intergenic | 60.0% | |
| CTTAAGAGGGGTGACCAGCG+AGG | - | chr1.4:86227358-86227377 | None:intergenic | 60.0% | |
| CTTCCCCAAAGCGCAAGGCT+AGG | - | chr1.4:86225228-86225247 | None:intergenic | 60.0% | |
| CTTCCTGGACCCTGCGTATG+CGG | + | chr1.4:86224277-86224296 | MS.gene029314:intron | 60.0% | |
| GCATACGCAGGGTCCAGGAA+GGG | - | chr1.4:86224278-86224297 | None:intergenic | 60.0% | |
| GGAGCGGTCAACCCCAAAAG+TGG | - | chr1.4:86224619-86224638 | None:intergenic | 60.0% | |
| GTCCAGCTCCTCTCCAACTG+TGG | + | chr1.4:86226921-86226940 | MS.gene029314:intron | 60.0% | |
| TCACCCCCACCGCAAGTTTG+TGG | - | chr1.4:86224756-86224775 | None:intergenic | 60.0% | |
| TCCTGCATTGTGGTGCGGAG+CGG | - | chr1.4:86224635-86224654 | None:intergenic | 60.0% | |
| TTCCTGGACCCTGCGTATGC+GGG | + | chr1.4:86224278-86224297 | MS.gene029314:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | + | chr1.4:86224262-86224281 | MS.gene029314:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1.4:86224295-86224314 | MS.gene029314:intron | 60.0% |
| !! | CTAGCCTTGCGCTTTGGGGA+AGG | + | chr1.4:86225226-86225245 | MS.gene029314:CDS | 60.0% |
| ACCGCTCCGCACCACAATGC+AGG | + | chr1.4:86224631-86224650 | MS.gene029314:intron | 65.0% | |
| CGCATACGCAGGGTCCAGGA+AGG | - | chr1.4:86224279-86224298 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTCC+AGG | - | chr1.4:86224283-86224302 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86223679 | 86228245 | 86223679 | ID=MS.gene029314 |
| chr1.4 | mRNA | 86223679 | 86228245 | 86223679 | ID=MS.gene029314.t1;Parent=MS.gene029314 |
| chr1.4 | exon | 86223679 | 86223692 | 86223679 | ID=MS.gene029314.t1.exon1;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86223679 | 86223692 | 86223679 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86223834 | 86223915 | 86223834 | ID=MS.gene029314.t1.exon2;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86223834 | 86223915 | 86223834 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86224006 | 86224086 | 86224006 | ID=MS.gene029314.t1.exon3;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86224006 | 86224086 | 86224006 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86224951 | 86225064 | 86224951 | ID=MS.gene029314.t1.exon4;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86224951 | 86225064 | 86224951 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86225163 | 86225264 | 86225163 | ID=MS.gene029314.t1.exon5;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86225163 | 86225264 | 86225163 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86225690 | 86225748 | 86225690 | ID=MS.gene029314.t1.exon6;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86225690 | 86225748 | 86225690 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86226700 | 86226802 | 86226700 | ID=MS.gene029314.t1.exon7;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86226700 | 86226802 | 86226700 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86227995 | 86228060 | 86227995 | ID=MS.gene029314.t1.exon8;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86227995 | 86228060 | 86227995 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| chr1.4 | exon | 86228153 | 86228245 | 86228153 | ID=MS.gene029314.t1.exon9;Parent=MS.gene029314.t1 |
| chr1.4 | CDS | 86228153 | 86228245 | 86228153 | ID=cds.MS.gene029314.t1;Parent=MS.gene029314.t1 |
| Gene Sequence |
| Protein sequence |
