Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035129.t1 | XP_003622316.1 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 3.20E-151 | 544.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035129.t1 | Q7DLS1 | 84.8 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.1e-135 | 483.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035129.t1 | G7L695 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 2.3e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035129.t1 | MTR_7g032930 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 551 |
| MS.gene035129.t1 | MTR_7g037830 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 546 |
| MS.gene035129.t1 | MTR_3g109210 | 31.282 | 195 | 131 | 2 | 24 | 217 | 1 | 193 | 1.43e-28 | 109 |
| MS.gene035129.t1 | MTR_3g089040 | 29.302 | 215 | 144 | 4 | 5 | 216 | 24 | 233 | 6.01e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035129.t1 | AT5G40580 | 84.758 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.86e-178 | 491 |
| MS.gene035129.t1 | AT5G40580 | 84.758 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.86e-178 | 491 |
| MS.gene035129.t1 | AT3G27430 | 84.328 | 268 | 41 | 1 | 4 | 270 | 5 | 272 | 1.10e-176 | 488 |
| MS.gene035129.t1 | AT5G40580 | 83.271 | 269 | 37 | 2 | 4 | 270 | 5 | 267 | 6.04e-172 | 475 |
| MS.gene035129.t1 | AT5G40580 | 83.271 | 269 | 37 | 2 | 4 | 270 | 5 | 267 | 6.04e-172 | 475 |
| MS.gene035129.t1 | AT3G27430 | 82.836 | 268 | 39 | 2 | 4 | 270 | 5 | 266 | 3.37e-170 | 471 |
| MS.gene035129.t1 | AT3G27430 | 86.066 | 244 | 34 | 0 | 4 | 247 | 5 | 248 | 6.43e-166 | 460 |
| MS.gene035129.t1 | AT4G31300 | 32.105 | 190 | 126 | 2 | 29 | 217 | 5 | 192 | 2.47e-28 | 108 |
| MS.gene035129.t1 | AT4G31300 | 32.105 | 190 | 126 | 2 | 29 | 217 | 5 | 192 | 2.47e-28 | 108 |
| MS.gene035129.t1 | AT4G31300 | 32.461 | 191 | 125 | 3 | 29 | 217 | 5 | 193 | 2.34e-27 | 106 |
| MS.gene035129.t1 | AT3G26340 | 31.527 | 203 | 135 | 3 | 14 | 213 | 32 | 233 | 9.18e-20 | 86.7 |
| MS.gene035129.t1 | AT1G13060 | 31.527 | 203 | 135 | 3 | 14 | 213 | 32 | 233 | 5.10e-19 | 84.7 |
| MS.gene035129.t1 | AT1G13060 | 28.194 | 227 | 135 | 4 | 14 | 213 | 32 | 257 | 4.24e-14 | 71.2 |
| MS.gene035129.t1 | AT1G13060 | 28.194 | 227 | 135 | 4 | 14 | 213 | 32 | 257 | 4.24e-14 | 71.2 |
| MS.gene035129.t1 | AT1G53850 | 25.381 | 197 | 137 | 4 | 35 | 223 | 31 | 225 | 2.30e-11 | 62.8 |
| MS.gene035129.t1 | AT1G53850 | 25.381 | 197 | 137 | 4 | 35 | 223 | 31 | 225 | 2.30e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGATGGTATCATTCT+TGG | 0.234558 | 7.4:+69464377 | MS.gene035129:intron |
| TTGTGAGAAAATTCATTATA+TGG | 0.247284 | 7.4:+69464445 | MS.gene035129:CDS |
| GTCTCAGCTGCATTAGTTCT+TGG | 0.249577 | 7.4:+69464851 | MS.gene035129:CDS |
| TTGACGAAAGTACGGGGATT+TGG | 0.267931 | 7.4:-69467296 | None:intergenic |
| CCATTTGCTACAATGGGATC+TGG | 0.384782 | 7.4:+69465038 | MS.gene035129:CDS |
| AACAAAGATTACTCCTTTGA+AGG | 0.392977 | 7.4:+69470552 | MS.gene035129:CDS |
| CTTGGTGGGGTTGACATCAC+TGG | 0.394539 | 7.4:+69464869 | MS.gene035129:CDS |
| CAGCTGCATTAGTTCTTGGT+GGG | 0.399091 | 7.4:+69464855 | MS.gene035129:CDS |
| ACCCTTCCATTTGCTACAAT+GGG | 0.407963 | 7.4:+69465032 | MS.gene035129:CDS |
| ATCAGCGACAATGGGTCCTT+CGG | 0.416864 | 7.4:-69464417 | None:intergenic |
| TTGGAGAATGTAAAGCCTCT+TGG | 0.424173 | 7.4:-69467320 | None:intergenic |
| TTCTGAAACTCAACTTGAAA+AGG | 0.426945 | 7.4:-69464750 | None:intergenic |
| GCTGATACAGAGGCTGTAAC+AGG | 0.429238 | 7.4:+69464503 | MS.gene035129:CDS |
| TGCTGGTATATTTAATGACT+TGG | 0.431167 | 7.4:+69467113 | MS.gene035129:CDS |
| CCAGATCCCATTGTAGCAAA+TGG | 0.434181 | 7.4:-69465038 | None:intergenic |
| CTCTTGATTCTCTACCAGTA+TGG | 0.437817 | 7.4:-69464696 | None:intergenic |
| CACCCTTCCATTTGCTACAA+TGG | 0.440530 | 7.4:+69465031 | MS.gene035129:CDS |
| TCATTCTTGGAGCAGATACC+AGG | 0.440553 | 7.4:+69464390 | MS.gene035129:CDS |
| CAACTACATCGCTACCATAC+TGG | 0.441368 | 7.4:+69464682 | MS.gene035129:CDS |
| ATATTTAATGACTTGGGAAG+TGG | 0.453974 | 7.4:+69467120 | MS.gene035129:CDS |
| AAGACAGGAACCACCATTGT+TGG | 0.458191 | 7.4:+69463743 | MS.gene035129:CDS |
| AGGGACATAAGGAATATCTA+AGG | 0.462529 | 7.4:+69467261 | MS.gene035129:intron |
| CTCTTGGATTGACGAAAGTA+CGG | 0.463690 | 7.4:-69467304 | None:intergenic |
| AAATGATATGCTCGAAAAGA+AGG | 0.466920 | 7.4:+69463697 | MS.gene035129:CDS |
| AACATATATTGTTGTGGAGC+AGG | 0.476690 | 7.4:+69464473 | MS.gene035129:CDS |
| ACTTCAACCTTCTCCTTCAA+AGG | 0.477866 | 7.4:-69470565 | None:intergenic |
| TCAGCTGCATTAGTTCTTGG+TGG | 0.479300 | 7.4:+69464854 | MS.gene035129:CDS |
| AATGGGTCCTTCGGTTGCCC+TGG | 0.483084 | 7.4:-69464408 | None:intergenic |
| GTCTGTCGATCTTCCTCCCA+AGG | 0.486942 | 7.4:+69463646 | MS.gene035129:CDS |
| GATTACTCCTTTGAAGGAGA+AGG | 0.487372 | 7.4:+69470558 | MS.gene035129:CDS |
| ATCAAAACTGAACCCACCCT+TGG | 0.488867 | 7.4:-69463663 | None:intergenic |
| TAATGCTGCACAGGGACATA+AGG | 0.493118 | 7.4:+69467250 | MS.gene035129:intron |
| TATCTGGCGCAGAGGGATGA+AGG | 0.497923 | 7.4:+69467063 | MS.gene035129:intron |
| GTTGTTGAGTCGATTTGTGC+TGG | 0.499093 | 7.4:+69467096 | MS.gene035129:CDS |
| GCCCCTACTTATTTGAAGAC+AGG | 0.500417 | 7.4:+69463728 | MS.gene035129:CDS |
| GTCGATCTTCCTCCCAAGGG+TGG | 0.500772 | 7.4:+69463650 | MS.gene035129:CDS |
| GTTCCTGTCTTCAAATAAGT+AGG | 0.504731 | 7.4:-69463731 | None:intergenic |
| TTCCTGTCTTCAAATAAGTA+GGG | 0.522396 | 7.4:-69463730 | None:intergenic |
| TCTTGGATTGACGAAAGTAC+GGG | 0.526036 | 7.4:-69467303 | None:intergenic |
| GAACTAACAGTATGCAAATG+AGG | 0.526164 | 7.4:-69464893 | None:intergenic |
| AGCTGCATTAGTTCTTGGTG+GGG | 0.528922 | 7.4:+69464856 | MS.gene035129:CDS |
| GCTCCACAACAATATATGTT+GGG | 0.530455 | 7.4:-69464470 | None:intergenic |
| AGTAATTGAAGCAGATGCTA+TGG | 0.538109 | 7.4:+69470585 | MS.gene035129:CDS |
| TCAAAACTGAACCCACCCTT+GGG | 0.540612 | 7.4:-69463662 | None:intergenic |
| TCGATCTTCCTCCCAAGGGT+GGG | 0.551349 | 7.4:+69463651 | MS.gene035129:CDS |
| AGGCACTGCTGCTGATACAG+AGG | 0.563322 | 7.4:+69464493 | MS.gene035129:CDS |
| ATCCCATTGTAGCAAATGGA+AGG | 0.564159 | 7.4:-69465034 | None:intergenic |
| TGCTCCACAACAATATATGT+TGG | 0.572528 | 7.4:-69464471 | None:intergenic |
| TCCTGTCTTCAAATAAGTAG+GGG | 0.589880 | 7.4:-69463729 | None:intergenic |
| TGTATTTGAGTCTAAATACA+AGG | 0.590364 | 7.4:+69465079 | MS.gene035129:CDS |
| GCTGGTATATTTAATGACTT+GGG | 0.598561 | 7.4:+69467114 | MS.gene035129:CDS |
| TTAAACATCTGCAGTTACCA+AGG | 0.603702 | 7.4:+69464824 | MS.gene035129:intron |
| AATGATATGCTCGAAAAGAA+GGG | 0.604225 | 7.4:+69463698 | MS.gene035129:CDS |
| TCCCATTGTAGCAAATGGAA+GGG | 0.616474 | 7.4:-69465033 | None:intergenic |
| AAGTACGGGGATTTGGCGTG+AGG | 0.621137 | 7.4:-69467289 | None:intergenic |
| CTGGAAAACTAAACCAACAA+TGG | 0.623311 | 7.4:-69463756 | None:intergenic |
| GCACCCAACATATATTGTTG+TGG | 0.626948 | 7.4:+69464467 | MS.gene035129:CDS |
| TGTAGCAAATGGAAGGGTGT+CGG | 0.633335 | 7.4:-69465027 | None:intergenic |
| CGTACTTTCGTCAATCCAAG+AGG | 0.636115 | 7.4:+69467305 | MS.gene035129:CDS |
| AAACTGAACCCACCCTTGGG+AGG | 0.638200 | 7.4:-69463659 | None:intergenic |
| GAAAACTAAACCAACAATGG+TGG | 0.640949 | 7.4:-69463753 | None:intergenic |
| CTTGGATTGACGAAAGTACG+GGG | 0.645114 | 7.4:-69467302 | None:intergenic |
| TCTGTCGATCTTCCTCCCAA+GGG | 0.651994 | 7.4:+69463647 | MS.gene035129:CDS |
| GCAGATACCAGGGCAACCGA+AGG | 0.657427 | 7.4:+69464401 | MS.gene035129:CDS |
| CATTCTTGGAGCAGATACCA+GGG | 0.666431 | 7.4:+69464391 | MS.gene035129:CDS |
| ATGCAGCTGAGACATGACCT+TGG | 0.674625 | 7.4:-69464841 | None:intergenic |
| TGATGTTTGTGTGATAACCA+AGG | 0.711392 | 7.4:+69467152 | MS.gene035129:CDS |
| AGGGTGTCGGTTGACCCATG+TGG | 0.717575 | 7.4:-69465014 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 69463638 | 69470611 | 69463638 | ID=MS.gene035129 |
| chr7.4 | mRNA | 69463638 | 69470611 | 69463638 | ID=MS.gene035129.t1;Parent=MS.gene035129 |
| chr7.4 | exon | 69463638 | 69463778 | 69463638 | ID=MS.gene035129.t1.exon1;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69463638 | 69463778 | 69463638 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69464383 | 69464524 | 69464383 | ID=MS.gene035129.t1.exon2;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69464383 | 69464524 | 69464383 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69464662 | 69464758 | 69464662 | ID=MS.gene035129.t1.exon3;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69464662 | 69464758 | 69464662 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69464838 | 69464907 | 69464838 | ID=MS.gene035129.t1.exon4;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69464838 | 69464907 | 69464838 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69465008 | 69465112 | 69465008 | ID=MS.gene035129.t1.exon5;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69465008 | 69465112 | 69465008 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69467075 | 69467173 | 69467075 | ID=MS.gene035129.t1.exon6;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69467075 | 69467173 | 69467075 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69467263 | 69467350 | 69467263 | ID=MS.gene035129.t1.exon7;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69467263 | 69467350 | 69467263 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| chr7.4 | exon | 69470542 | 69470611 | 69470542 | ID=MS.gene035129.t1.exon8;Parent=MS.gene035129.t1 |
| chr7.4 | CDS | 69470542 | 69470611 | 69470542 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
| Gene Sequence |
| Protein sequence |