Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035129.t1 | XP_003622316.1 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 3.20E-151 | 544.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035129.t1 | Q7DLS1 | 84.8 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.1e-135 | 483.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035129.t1 | G7L695 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 2.3e-151 | 544.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035129.t1 | MTR_7g032930 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 551 |
MS.gene035129.t1 | MTR_7g037830 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 546 |
MS.gene035129.t1 | MTR_3g109210 | 31.282 | 195 | 131 | 2 | 24 | 217 | 1 | 193 | 1.43e-28 | 109 |
MS.gene035129.t1 | MTR_3g089040 | 29.302 | 215 | 144 | 4 | 5 | 216 | 24 | 233 | 6.01e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035129.t1 | AT5G40580 | 84.758 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.86e-178 | 491 |
MS.gene035129.t1 | AT5G40580 | 84.758 | 269 | 39 | 1 | 4 | 270 | 5 | 273 | 2.86e-178 | 491 |
MS.gene035129.t1 | AT3G27430 | 84.328 | 268 | 41 | 1 | 4 | 270 | 5 | 272 | 1.10e-176 | 488 |
MS.gene035129.t1 | AT5G40580 | 83.271 | 269 | 37 | 2 | 4 | 270 | 5 | 267 | 6.04e-172 | 475 |
MS.gene035129.t1 | AT5G40580 | 83.271 | 269 | 37 | 2 | 4 | 270 | 5 | 267 | 6.04e-172 | 475 |
MS.gene035129.t1 | AT3G27430 | 82.836 | 268 | 39 | 2 | 4 | 270 | 5 | 266 | 3.37e-170 | 471 |
MS.gene035129.t1 | AT3G27430 | 86.066 | 244 | 34 | 0 | 4 | 247 | 5 | 248 | 6.43e-166 | 460 |
MS.gene035129.t1 | AT4G31300 | 32.105 | 190 | 126 | 2 | 29 | 217 | 5 | 192 | 2.47e-28 | 108 |
MS.gene035129.t1 | AT4G31300 | 32.105 | 190 | 126 | 2 | 29 | 217 | 5 | 192 | 2.47e-28 | 108 |
MS.gene035129.t1 | AT4G31300 | 32.461 | 191 | 125 | 3 | 29 | 217 | 5 | 193 | 2.34e-27 | 106 |
MS.gene035129.t1 | AT3G26340 | 31.527 | 203 | 135 | 3 | 14 | 213 | 32 | 233 | 9.18e-20 | 86.7 |
MS.gene035129.t1 | AT1G13060 | 31.527 | 203 | 135 | 3 | 14 | 213 | 32 | 233 | 5.10e-19 | 84.7 |
MS.gene035129.t1 | AT1G13060 | 28.194 | 227 | 135 | 4 | 14 | 213 | 32 | 257 | 4.24e-14 | 71.2 |
MS.gene035129.t1 | AT1G13060 | 28.194 | 227 | 135 | 4 | 14 | 213 | 32 | 257 | 4.24e-14 | 71.2 |
MS.gene035129.t1 | AT1G53850 | 25.381 | 197 | 137 | 4 | 35 | 223 | 31 | 225 | 2.30e-11 | 62.8 |
MS.gene035129.t1 | AT1G53850 | 25.381 | 197 | 137 | 4 | 35 | 223 | 31 | 225 | 2.30e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAGGATGGTATCATTCT+TGG | 0.234558 | 7.4:+69464377 | MS.gene035129:intron |
TTGTGAGAAAATTCATTATA+TGG | 0.247284 | 7.4:+69464445 | MS.gene035129:CDS |
GTCTCAGCTGCATTAGTTCT+TGG | 0.249577 | 7.4:+69464851 | MS.gene035129:CDS |
TTGACGAAAGTACGGGGATT+TGG | 0.267931 | 7.4:-69467296 | None:intergenic |
CCATTTGCTACAATGGGATC+TGG | 0.384782 | 7.4:+69465038 | MS.gene035129:CDS |
AACAAAGATTACTCCTTTGA+AGG | 0.392977 | 7.4:+69470552 | MS.gene035129:CDS |
CTTGGTGGGGTTGACATCAC+TGG | 0.394539 | 7.4:+69464869 | MS.gene035129:CDS |
CAGCTGCATTAGTTCTTGGT+GGG | 0.399091 | 7.4:+69464855 | MS.gene035129:CDS |
ACCCTTCCATTTGCTACAAT+GGG | 0.407963 | 7.4:+69465032 | MS.gene035129:CDS |
ATCAGCGACAATGGGTCCTT+CGG | 0.416864 | 7.4:-69464417 | None:intergenic |
TTGGAGAATGTAAAGCCTCT+TGG | 0.424173 | 7.4:-69467320 | None:intergenic |
TTCTGAAACTCAACTTGAAA+AGG | 0.426945 | 7.4:-69464750 | None:intergenic |
GCTGATACAGAGGCTGTAAC+AGG | 0.429238 | 7.4:+69464503 | MS.gene035129:CDS |
TGCTGGTATATTTAATGACT+TGG | 0.431167 | 7.4:+69467113 | MS.gene035129:CDS |
CCAGATCCCATTGTAGCAAA+TGG | 0.434181 | 7.4:-69465038 | None:intergenic |
CTCTTGATTCTCTACCAGTA+TGG | 0.437817 | 7.4:-69464696 | None:intergenic |
CACCCTTCCATTTGCTACAA+TGG | 0.440530 | 7.4:+69465031 | MS.gene035129:CDS |
TCATTCTTGGAGCAGATACC+AGG | 0.440553 | 7.4:+69464390 | MS.gene035129:CDS |
CAACTACATCGCTACCATAC+TGG | 0.441368 | 7.4:+69464682 | MS.gene035129:CDS |
ATATTTAATGACTTGGGAAG+TGG | 0.453974 | 7.4:+69467120 | MS.gene035129:CDS |
AAGACAGGAACCACCATTGT+TGG | 0.458191 | 7.4:+69463743 | MS.gene035129:CDS |
AGGGACATAAGGAATATCTA+AGG | 0.462529 | 7.4:+69467261 | MS.gene035129:intron |
CTCTTGGATTGACGAAAGTA+CGG | 0.463690 | 7.4:-69467304 | None:intergenic |
AAATGATATGCTCGAAAAGA+AGG | 0.466920 | 7.4:+69463697 | MS.gene035129:CDS |
AACATATATTGTTGTGGAGC+AGG | 0.476690 | 7.4:+69464473 | MS.gene035129:CDS |
ACTTCAACCTTCTCCTTCAA+AGG | 0.477866 | 7.4:-69470565 | None:intergenic |
TCAGCTGCATTAGTTCTTGG+TGG | 0.479300 | 7.4:+69464854 | MS.gene035129:CDS |
AATGGGTCCTTCGGTTGCCC+TGG | 0.483084 | 7.4:-69464408 | None:intergenic |
GTCTGTCGATCTTCCTCCCA+AGG | 0.486942 | 7.4:+69463646 | MS.gene035129:CDS |
GATTACTCCTTTGAAGGAGA+AGG | 0.487372 | 7.4:+69470558 | MS.gene035129:CDS |
ATCAAAACTGAACCCACCCT+TGG | 0.488867 | 7.4:-69463663 | None:intergenic |
TAATGCTGCACAGGGACATA+AGG | 0.493118 | 7.4:+69467250 | MS.gene035129:intron |
TATCTGGCGCAGAGGGATGA+AGG | 0.497923 | 7.4:+69467063 | MS.gene035129:intron |
GTTGTTGAGTCGATTTGTGC+TGG | 0.499093 | 7.4:+69467096 | MS.gene035129:CDS |
GCCCCTACTTATTTGAAGAC+AGG | 0.500417 | 7.4:+69463728 | MS.gene035129:CDS |
GTCGATCTTCCTCCCAAGGG+TGG | 0.500772 | 7.4:+69463650 | MS.gene035129:CDS |
GTTCCTGTCTTCAAATAAGT+AGG | 0.504731 | 7.4:-69463731 | None:intergenic |
TTCCTGTCTTCAAATAAGTA+GGG | 0.522396 | 7.4:-69463730 | None:intergenic |
TCTTGGATTGACGAAAGTAC+GGG | 0.526036 | 7.4:-69467303 | None:intergenic |
GAACTAACAGTATGCAAATG+AGG | 0.526164 | 7.4:-69464893 | None:intergenic |
AGCTGCATTAGTTCTTGGTG+GGG | 0.528922 | 7.4:+69464856 | MS.gene035129:CDS |
GCTCCACAACAATATATGTT+GGG | 0.530455 | 7.4:-69464470 | None:intergenic |
AGTAATTGAAGCAGATGCTA+TGG | 0.538109 | 7.4:+69470585 | MS.gene035129:CDS |
TCAAAACTGAACCCACCCTT+GGG | 0.540612 | 7.4:-69463662 | None:intergenic |
TCGATCTTCCTCCCAAGGGT+GGG | 0.551349 | 7.4:+69463651 | MS.gene035129:CDS |
AGGCACTGCTGCTGATACAG+AGG | 0.563322 | 7.4:+69464493 | MS.gene035129:CDS |
ATCCCATTGTAGCAAATGGA+AGG | 0.564159 | 7.4:-69465034 | None:intergenic |
TGCTCCACAACAATATATGT+TGG | 0.572528 | 7.4:-69464471 | None:intergenic |
TCCTGTCTTCAAATAAGTAG+GGG | 0.589880 | 7.4:-69463729 | None:intergenic |
TGTATTTGAGTCTAAATACA+AGG | 0.590364 | 7.4:+69465079 | MS.gene035129:CDS |
GCTGGTATATTTAATGACTT+GGG | 0.598561 | 7.4:+69467114 | MS.gene035129:CDS |
TTAAACATCTGCAGTTACCA+AGG | 0.603702 | 7.4:+69464824 | MS.gene035129:intron |
AATGATATGCTCGAAAAGAA+GGG | 0.604225 | 7.4:+69463698 | MS.gene035129:CDS |
TCCCATTGTAGCAAATGGAA+GGG | 0.616474 | 7.4:-69465033 | None:intergenic |
AAGTACGGGGATTTGGCGTG+AGG | 0.621137 | 7.4:-69467289 | None:intergenic |
CTGGAAAACTAAACCAACAA+TGG | 0.623311 | 7.4:-69463756 | None:intergenic |
GCACCCAACATATATTGTTG+TGG | 0.626948 | 7.4:+69464467 | MS.gene035129:CDS |
TGTAGCAAATGGAAGGGTGT+CGG | 0.633335 | 7.4:-69465027 | None:intergenic |
CGTACTTTCGTCAATCCAAG+AGG | 0.636115 | 7.4:+69467305 | MS.gene035129:CDS |
AAACTGAACCCACCCTTGGG+AGG | 0.638200 | 7.4:-69463659 | None:intergenic |
GAAAACTAAACCAACAATGG+TGG | 0.640949 | 7.4:-69463753 | None:intergenic |
CTTGGATTGACGAAAGTACG+GGG | 0.645114 | 7.4:-69467302 | None:intergenic |
TCTGTCGATCTTCCTCCCAA+GGG | 0.651994 | 7.4:+69463647 | MS.gene035129:CDS |
GCAGATACCAGGGCAACCGA+AGG | 0.657427 | 7.4:+69464401 | MS.gene035129:CDS |
CATTCTTGGAGCAGATACCA+GGG | 0.666431 | 7.4:+69464391 | MS.gene035129:CDS |
ATGCAGCTGAGACATGACCT+TGG | 0.674625 | 7.4:-69464841 | None:intergenic |
TGATGTTTGTGTGATAACCA+AGG | 0.711392 | 7.4:+69467152 | MS.gene035129:CDS |
AGGGTGTCGGTTGACCCATG+TGG | 0.717575 | 7.4:-69465014 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 69463638 | 69470611 | 69463638 | ID=MS.gene035129 |
chr7.4 | mRNA | 69463638 | 69470611 | 69463638 | ID=MS.gene035129.t1;Parent=MS.gene035129 |
chr7.4 | exon | 69463638 | 69463778 | 69463638 | ID=MS.gene035129.t1.exon1;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69463638 | 69463778 | 69463638 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69464383 | 69464524 | 69464383 | ID=MS.gene035129.t1.exon2;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69464383 | 69464524 | 69464383 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69464662 | 69464758 | 69464662 | ID=MS.gene035129.t1.exon3;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69464662 | 69464758 | 69464662 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69464838 | 69464907 | 69464838 | ID=MS.gene035129.t1.exon4;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69464838 | 69464907 | 69464838 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69465008 | 69465112 | 69465008 | ID=MS.gene035129.t1.exon5;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69465008 | 69465112 | 69465008 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69467075 | 69467173 | 69467075 | ID=MS.gene035129.t1.exon6;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69467075 | 69467173 | 69467075 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69467263 | 69467350 | 69467263 | ID=MS.gene035129.t1.exon7;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69467263 | 69467350 | 69467263 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
chr7.4 | exon | 69470542 | 69470611 | 69470542 | ID=MS.gene035129.t1.exon8;Parent=MS.gene035129.t1 |
chr7.4 | CDS | 69470542 | 69470611 | 69470542 | ID=cds.MS.gene035129.t1;Parent=MS.gene035129.t1 |
Gene Sequence |
Protein sequence |