AlfalfaGEDB | MS.gene92186

M. sativa cultivar XinJiangDaYe / MS.gene92186

KEGG: K02726
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004298 GO:0005575 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0019773 GO:0019941 GO:0032991 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0051603 GO:0070003 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901575
PFAM: PF00227.29 PF10584.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92186.t1	XP_013442471.1	100	235	0	0	1	235	1	235	7.00E-126	459.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92186.t1	O23708	94.0	235	14	0	1	235	1	235	1.7e-120	433.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92186.t1	I3SFE3	100.0	235	0	0	1	235	1	235	5.1e-126	459.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene92186	0.812064	5.12E-51	-1.69E-46
MS.gene049756	MS.gene92186	0.834352	3.15E-56	-1.69E-46
MS.gene04984	MS.gene92186	0.820197	7.79E-53	-1.69E-46
MS.gene050114	MS.gene92186	0.853858	1.81E-61	-1.69E-46
MS.gene050277	MS.gene92186	0.846874	1.65E-59	-1.69E-46
MS.gene050317	MS.gene92186	0.824842	6.48E-54	-1.69E-46
MS.gene050320	MS.gene92186	0.820546	6.48E-53	-1.69E-46
MS.gene050439	MS.gene92186	0.842734	2.16E-58	-1.69E-46
MS.gene050623	MS.gene92186	-0.813649	2.30E-51	-1.69E-46
MS.gene050719	MS.gene92186	0.83031	3.16E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005257	MS.gene92186	PPI
MS.gene006641	MS.gene92186	PPI
MS.gene007628	MS.gene92186	PPI
MS.gene014485	MS.gene92186	PPI
MS.gene014672	MS.gene92186	PPI
MS.gene014704	MS.gene92186	PPI
MS.gene015192	MS.gene92186	PPI
MS.gene015193	MS.gene92186	PPI
MS.gene017616	MS.gene92186	PPI
MS.gene017622	MS.gene92186	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92186.t1	MTR_0167s0060	100.000	235	0	0	1	235	1	235	9.45e-175	479
MS.gene92186.t1	MTR_8g075320	38.767	227	134	3	4	228	2	225	1.11e-51	168
MS.gene92186.t1	MTR_2g060830	38.961	231	136	4	6	231	9	239	1.25e-51	168
MS.gene92186.t1	MTR_7g070070	36.752	234	141	4	5	231	4	237	6.13e-49	161
MS.gene92186.t1	MTR_5g016590	36.325	234	142	4	5	231	4	237	4.15e-48	159
MS.gene92186.t1	MTR_8g464460	38.961	231	136	4	6	231	9	239	5.18e-48	159
MS.gene92186.t1	MTR_1g112250	35.526	228	142	2	4	228	6	231	1.84e-47	157
MS.gene92186.t1	MTR_2g016050	37.445	227	137	3	4	228	2	225	2.35e-46	154
MS.gene92186.t1	MTR_1g022410	35.111	225	141	3	1	222	1	223	1.79e-41	143
MS.gene92186.t1	MTR_6g024135	36.612	183	116	0	6	188	8	190	4.38e-39	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92186.t1	AT1G16470	94.043	235	14	0	1	235	1	235	5.50e-164	452
MS.gene92186.t1	AT1G16470	94.043	235	14	0	1	235	1	235	5.50e-164	452
MS.gene92186.t1	AT1G79210	93.191	235	16	0	1	235	1	235	1.03e-162	449
MS.gene92186.t1	AT1G79210	93.191	235	16	0	1	235	1	235	1.03e-162	449
MS.gene92186.t1	AT1G79210	93.191	235	16	0	1	235	1	235	1.03e-162	449
MS.gene92186.t1	AT5G66140	39.035	228	133	4	4	228	2	226	3.83e-50	164
MS.gene92186.t1	AT3G51260	38.596	228	134	4	4	228	2	226	8.88e-49	160
MS.gene92186.t1	AT3G51260	39.623	212	123	3	4	213	2	210	1.60e-48	160
MS.gene92186.t1	AT1G53850	35.526	228	142	2	4	228	6	231	1.62e-47	157
MS.gene92186.t1	AT1G53850	35.526	228	142	2	4	228	6	231	1.62e-47	157

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Find 51 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATCATCAATTTCAGC+TGG	0.537679	2.4:+27344599	None:intergenic
AACATTGAAATCGGCATCAT+TGG	0.369450	2.4:-27345540	MS.gene92186:CDS
ACAAGCAGGGACACTCCAAA+TGG	0.570540	2.4:+27346653	None:intergenic
ACAAGTTGAGTGACAGGGAT+TGG	0.466755	2.4:+27347406	None:intergenic
AGATGGCAGTTTCTTCTCTG+TGG	0.628548	2.4:+27349087	None:intergenic
AGCTGAAATTGATGATTATT+TGG	0.158426	2.4:-27344597	MS.gene92186:CDS
ATCAAACCCAGCAACAAGCA+GGG	0.606489	2.4:+27346640	None:intergenic
ATCTGAACAAGCTTACCAGA+AGG	0.620962	2.4:+27349882	None:intergenic
ATGCAGGAATTTACTCAGTC+TGG	0.352073	2.4:-27347364	MS.gene92186:CDS
CAAACTTCTCTCGGTATCAA+AGG	0.527227	2.4:-27349828	MS.gene92186:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAAACTTGAGCTTAC+TGG	+	chr2.4:27349832-27349851	None:intergenic	30.0%
AAATACACGTTCTTTCAGAA+AGG	+	chr2.4:27347594-27347613	None:intergenic	30.0%
AAGATAACAGAAAAGACAAC+TGG	+	chr2.4:27347013-27347032	None:intergenic	30.0%
AAGGATGCTGAGTAATTTAA+AGG	+	chr2.4:27345583-27345602	None:intergenic	30.0%
AATAAGAACCCTAAAACATG+AGG	+	chr2.4:27344750-27344769	None:intergenic	30.0%
AATATCAAATTCCGAAGTAC+AGG	+	chr2.4:27346744-27346763	None:intergenic	30.0%
AATGAAAATGCACCTAAGAT+TGG	-	chr2.4:27348589-27348608	MS.gene92186:intron	30.0%
AATGGAGGCTAATTAAAATC+AGG	-	chr2.4:27349633-27349652	MS.gene92186:intron	30.0%
AATGGGTACTTCATATTGAT+TGG	+	chr2.4:27347423-27347442	None:intergenic	30.0%
AATTGGATACAATCTTGAAG+TGG	+	chr2.4:27345534-27345553	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	27344583	27349946	27344583	ID=MS.gene92186
chr2.4	mRNA	27344583	27349946	27344583	ID=MS.gene92186.t1;Parent=MS.gene92186
chr2.4	exon	27349829	27349946	27349829	ID=MS.gene92186.t1.exon1;Parent=MS.gene92186.t1
chr2.4	CDS	27349829	27349946	27349829	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27349066	27349130	27349066	ID=MS.gene92186.t1.exon2;Parent=MS.gene92186.t1
chr2.4	CDS	27349066	27349130	27349066	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27348607	27348653	27348607	ID=MS.gene92186.t1.exon3;Parent=MS.gene92186.t1
chr2.4	CDS	27348607	27348653	27348607	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27347871	27347946	27347871	ID=MS.gene92186.t1.exon4;Parent=MS.gene92186.t1
chr2.4	CDS	27347871	27347946	27347871	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27347364	27347431	27347364	ID=MS.gene92186.t1.exon5;Parent=MS.gene92186.t1
chr2.4	CDS	27347364	27347431	27347364	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27346616	27346685	27346616	ID=MS.gene92186.t1.exon6;Parent=MS.gene92186.t1
chr2.4	CDS	27346616	27346685	27346616	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27346386	27346471	27346386	ID=MS.gene92186.t1.exon7;Parent=MS.gene92186.t1
chr2.4	CDS	27346386	27346471	27346386	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27346126	27346188	27346126	ID=MS.gene92186.t1.exon8;Parent=MS.gene92186.t1
chr2.4	CDS	27346126	27346188	27346126	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27345522	27345587	27345522	ID=MS.gene92186.t1.exon9;Parent=MS.gene92186.t1
chr2.4	CDS	27345522	27345587	27345522	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1
chr2.4	exon	27344583	27344631	27344583	ID=MS.gene92186.t1.exon10;Parent=MS.gene92186.t1
chr2.4	CDS	27344583	27344631	27344583	ID=cds.MS.gene92186.t1;Parent=MS.gene92186.t1

Gene Sequence

>MS.gene92186

ATGGGAGATAGTCAATACTCGTTTTCTCTTACAACTTTTAGTCCTTCTGGTAAGCTTGTTCAGATTGAACATGCTTTAACTGCTGTTGGTTCTGGACAAACTTCTCTCGGTATCAAAGGTATTTCTTTCATTCATTCGATTCGATCTGCTTCCAACCCTTTTTTCCTCATGTTTTAGGGTTCTTATTTTCAATTGCTTTTATTTCAATGTATTAGTTTAAGGTACATAAAATATGGGATAAAACAGCAAATATGTACTTGAGTCATTTAGATGTTGAAACAAATCCACAAATCAAATCGGTGGACTTGATTTCGGTACTGTTTGTTCTTGTATTCTTTTTCCGAGTTCACTTTATCTCGGTACTAGCTTTTTCCTTATTAGAAGCATGGGCAGGGTTTTAACTTCTGTCCCTCCCAGTGGTAGATTGAACTTGTATGATTGTCGTCTGATGGATAGGCAGAATGAATGTTGATTTCTTATTTATTGTGTAACTGTTCTTTATGAAGCCTTGTGAGTTTATTTGGGCATGGTGTGCAGGATAAGTTATGTTGGGAGGCTAGAGTTGAAATTTATTTAGTTTGCGATTACATTTATTTTATGCTTCAGTACTATCATAATGGTATAACTTGTTCATATTGCACATAGGAGGTCCATTTATTTGCAAATATCCTCTATTATTTCTGCAATTTGTACTATCTTTTCTAACTTTGATTTTGTGTGGATGATTTCTTTTTTGTAATATTAGCTGCAACATGTGTTTGTTTGTAACTATATATATATTTGGTTTTTTTGTAACTATATTTTTGGTTCTTGCAGCTGCAAATGGAGTTGTCATTGCCACAGAGAAGAAACTGCCATCTATATTGGTTGATGAAGCATCAGTAAGTTGTTTTTTCTTTGGATCAATTTTTGTACATTATTATTAGTGAAATATAAATCTGAAATTGCCCACTTCAAGATTGTATCCAATTTGGCTGTGCTATCGTTTTCTGCATCCCCTTTAAATTACTCAGCATCCTTATCTAATTTTTGTTTATTCTGGTTTATCTAATAATCCTTCTCGGCTTAGTATTTGAGAAGTATTTGCAAAGTAGAAAATGTTCTTATATCGTGATAGTTGAGGATACTTGAAAGTATGGCCAATTGGCCATTGATAGAACAAAATTTTATCTAGTTTCCGCAAGTTGTTTGTGGACTTTCTTTTATAAACGAGCTATGTAATATTTAGTTCACTTGATTAATTCAAGATTTCATACATTCTGGAGTTTTTACTCTTTGTTCATATGACTGCAGGTCCAAAAAATTCAGTTATTAACACCAAATATAGGTGTTGTATACAGGTTTGTTTCTTCTTACATGTTTCAATCACTTTAAGTTCAAACATGTTTGTATGGCATTATTATTTCTTTGTACAGTGATATTTGCTTCATATTATGGCAGTTGATGGTTGAGTTTTGAATATGTTCTTAAACACGAGGTGCTATTGAAGTTTCTGTTAGGAACCCAGACAAAATGAAATGAAAGAAAACTAGAAAGAATGAAAATCATAGAAGTGTATTATTGAAAACTAAACACATAGCTGAATTATATCCAAGGGTTTTCCCTTCACAAAAGGTCCCTCCTTTCGTTTACAAACCCTCTGAAGTACTTGATGAATCATCCAAACTGATTCCCCCTATTTATCTAACCCATCACCTTCTAATCCCTTCCAACTGCCTATCCCTGAGTAACTCCTTGAAACAGTTTTCACAGAATAAACAACTGATGAATCTTGAAAGCTATTTTCAATGTTTTTCTATATTTTCATTTTAACTCCTTGTAAGAGATAAACTATTGAAAGAACATGTTTTCTGATGTTTATTGTGTGTGAAGCTTCATTTAATGTCTATTAGCCTACTTTTTTCCATTGCTGTTGAGCTTTTGGTATATGACAGTGGTTATTTTTGCTTAGATTATTTTCAAATATTGTATTTATTGATATCAATTTTGTTTTTGTTCAGTGGCATGGGTCCTGATTTCCGAGTTTTGGTTCGAAAAAGCAGGAAACAGGCTGAGCAGTATCACCGATTGTATAAGGTACACCATACTATGTATTGCAATATTCTTTCTTCCTGTTCTGCCTATATTTGGTCTATATGATTCAGTTACAATGTTGTAACCTGTACTTCGGAATTTGATATTGGAATGGATTTTATCGTTTAAATTTTACTTGGTAACATCTACATATGTAGTCTGCCTATTCCTTTATTTCCTATTGCTTGTAATGAGTTAGGACACTGTTGCTTGTTATACATCAATTACATGTTCCTTAAATAATTTCTTTTTCCTTTTCTGGATAGTGCCGTTTACTTTTTATTTGTGTTTGTTGAAAAATACACAGTTTATGCTACTGATAATGTTGATCTTTATGAATATGCATTTTCTAGTCCAGTTGTCTTTTCTGTTATCTTTTGGTTTTCTATTATGGATCTTTTGTTAAAAATAGACTGTCTGATACTGTAAGTGAAAATTGCAGGAACCAATCCCTGTCACTCAACTTGTGAGGGAAGTTGCTGCTGTCATGCAGGAATTTACTCAGTCTGGGTAATTATTAATTCTTCAGTGTCTTTGCTTTCAGAAATTTTCACATCTGAACTTTACCATATCTACTCCCAGCATATAAGTTTATGTTATGTACATATGTCATCCCTCCCATCACAAAAAATAAAATAAAAAACTAAGATAGAGAGAGAAATAACGTGTAATCCAGGTAAAGTTGGTGTTTTATCCTCATCAACTTTGAGTTTTTGGTAAATTTCACAACTTATAAGAAAATAAAATTGTCAAAAGCATTTACTCCAATCAATATGAAGTACCCATTTTGATGCTTTTCAAAGTTGATGGATATTAATTGTTATAATCAAATTAAATGTCGAGAAATCGTTTCACAAACCTCGATTATCATCATATGTTAAGGGAAGTTTGAAATGAGTTTAAAAGGTGTCTGACTCTGAAACTTTGTACATTTTCCTTTCTGAAAGAACGTGTATTTGGGGATCTATTAACAGCAGCATTAGTTAATTTTTATGCAACTGTTGGGAACTCACTGTTTAGATAAACATTTTGTTCCTATTGGAATTCCATAATGAACCCCTAAATATAAAATGCAACGAACTTAGTTGGATCCTCCGACTCTTTTTTATACACACAATTGTCTTTTTCTTTCCATTTCTCCCCTTTATTATCATTTGAATATTAATTTTTCTTTTTTTGCCCTGATAGTGGTGTTAGGCCATTTGGAGTGTCCCTGCTTGTTGCTGGGTTTGATGATAATGGACCACAACTATATCAGGTATGGCATATGGTGTACTTTGTAATTTGTATTGTGTTTGATTAGTTTGCACTGGAATTTTTTTCTTCTTGCTCTAGAATTGTTTAAAGTTACTGTACTTTTAAGGGAAAGAGAAGGGAAAATTGAAGGTTGTTTTTGCTGTAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCTAAGACATTTCTTGAGAAGAGGTATGCTTTCACATTAATGATGGCAATGTTTTAGGCAAATATGCGGAGTCTATCAATGTATAATGTCTATGTCTGCTGTGTCCATTATTAGAGATTAATGTAATGATATGTTTCTGTTTGATGTTAGTATCGTTCAGTACAGATAAACCTCGACATCTCTATCAATTCATGTTTTTTCCTTGATTGTCCAATTGTAGATACACTGATGATATGGAGCTTGATGATGCAGTCCACACAGCCATATTGACACTGAAGGAAGGGTAGGAAAATGCCGTGTAACGTTTATGCATTAAAAAACCTTAATGAAAATATCATATTTAATTCTTAGAGTTGATTAGGTCGCAAAAAACCAGTTTTTGTGTGTTTATTTCTCCGTTTAAGCAAAATGTTTCTTCCTGTCAGTTAGTGTATGATAAATTCCATGTTTCAGAATTATAAAATGGAGAATGAAAATGCACCTAAGATTGGCTTCTTGGTTCAACTGAAAAATATTGAGGCTATTCTTATCTAGTGTATCAAAGAAATTTCTTATTAGTGATCTTGGCATATACCAAAGGCCCATCCCTGTAAAATCATCATGAGCTGCCTTTATGTTAGCAAGGCTCCAAGCTTGTTGGATTAGGAACTTGAAAATGACAGCGAGTGATTACTGTTCTTGTTTCCCTTCATTGCCATTTTTTATGTTGTTTGTTTCCTCTTTCTTTTTAATTCTTTTCTGCTATACCAAAAGAAAAAAAAAAAAAAATATCCGGCCTTTGTTAGTCTTTGAAACTAATCCCTTTTGTTGGCATTTCCCAGGTTTGAGGGACAGATCTCAGCAAAAAACATTGAAATCGGCATCATTGGTGCAGACAAAAAGTTCAGGTGCATATCTTTGTTCCCTAAAATATACTTTGGCTGACTTTTCTGTCATGTTTTTCCCCCTTTTCAGTATTTGTTTATTTGAACTTTGTATCATCTGGTTTCTTTTACCGATCAAATTGAGCTAAAAATTATGCTATGGGTTATCCAATCTGAATAATTAAAAGGTATAAATTTGAGGCATATGGGTTAGGACTGCGAAATGGAATTTAGTCACTGAAATGAATATTATGGTGTGTTTGTTATACATTTGCACCATGGTCAAAAAGCTTAGATCAAGTCCTTTGGGTGTTGTTTGGTTTTGTTATTAGTTTAGTTTTGAAATGTTTAAAAACCAACACCATGTCCAATTTTGTGGTTTTCACTTTCAATAATTGCTGTGAAGTTATAAATTCTTGGACCCCGTTGCCCGACAGTCTCTATTATGTTGTCACCTAGTACTCCTCCACTCGCACTAAACACCCTCCACTTTAAGTTTGTAACCATGTTGCATGCTCCATTCCCGTCTACGTGTGGTATCCTCCATTGTTGTCAAATACCCCTCCATCTTGTATCTTGTCATCATGTTTTGAAATCAATGACATGTATATATTATTTTTTTCCTTTAAATTATGCAACATATATTTTTAATGGAGGCTAATTAAAATCAGGAAAGATATTCACATATTTACATTGTTCGACAAACTGGATCCCAAAAATATTAAGACTCTGATATGAGTTTTTTGTTTTACCAATGCAAATGGATAACTTCCCAATGCATTTTGTGAGTAGCAAGTTTTTTTTCTTATTTTTTGCTGGTGGGGTGGCATTGGGGCATAAAACGACCAGTAAGCTCAAGTTTTTGTTTTGAATACCTGATTTGGTAACTTAATAGTTTGTTAATTATATTGCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAATAA

Protein sequence

>MS.gene92186.t1

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEASVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISAKNIEIGIIGADKKFRVLTPAEIDDYLGEVE