Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55530.t1 | XP_013451443.1 | 100 | 249 | 0 | 0 | 54 | 302 | 1 | 249 | 2.70E-138 | 501.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55530.t1 | O24362 | 88.8 | 249 | 28 | 0 | 54 | 302 | 1 | 249 | 6.3e-128 | 458.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55530.t1 | A0A072U8Q5 | 100.0 | 249 | 0 | 0 | 54 | 302 | 1 | 249 | 1.9e-138 | 501.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049368 | MS.gene55530 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene049685 | MS.gene55530 | 0.837054 | 6.52E-57 | -1.69E-46 |
| MS.gene049887 | MS.gene55530 | 0.833619 | 4.80E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene55530 | 0.821936 | 3.10E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene55530 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene55530 | 0.82504 | 5.82E-54 | -1.69E-46 |
| MS.gene050359 | MS.gene55530 | 0.829218 | 5.82E-55 | -1.69E-46 |
| MS.gene050384 | MS.gene55530 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene55530 | 0.830479 | 2.87E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene55530 | 0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene55530 | 0.831882 | 1.30E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene55530 | 0.849898 | 2.41E-60 | -1.69E-46 |
| MS.gene050752 | MS.gene55530 | 0.832371 | 9.82E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene55530 | 0.87408 | 8.93E-68 | -1.69E-46 |
| MS.gene050941 | MS.gene55530 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene55530 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene55530 | 0.833613 | 4.82E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene55530 | 0.838442 | 2.87E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene55530 | 0.853491 | 2.31E-61 | -1.69E-46 |
| MS.gene051234 | MS.gene55530 | 0.846607 | 1.95E-59 | -1.69E-46 |
| MS.gene051343 | MS.gene55530 | 0.844195 | 8.78E-59 | -1.69E-46 |
| MS.gene051381 | MS.gene55530 | 0.81153 | 6.69E-51 | -1.69E-46 |
| MS.gene051642 | MS.gene55530 | 0.817953 | 2.52E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene55530 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene55530 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene55530 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene55530 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene55530 | 0.824888 | 6.32E-54 | -1.69E-46 |
| MS.gene052242 | MS.gene55530 | -0.802873 | 4.56E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene55530 | 0.82605 | 3.36E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene55530 | 0.851333 | 9.50E-61 | -1.69E-46 |
| MS.gene052342 | MS.gene55530 | 0.846151 | 2.60E-59 | -1.69E-46 |
| MS.gene052397 | MS.gene55530 | 0.836132 | 1.12E-56 | -1.69E-46 |
| MS.gene052434 | MS.gene55530 | 0.813911 | 2.01E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene55530 | 0.812784 | 3.56E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene55530 | 0.838846 | 2.26E-57 | -1.69E-46 |
| MS.gene053058 | MS.gene55530 | 0.850884 | 1.27E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene55530 | 0.80032 | 1.52E-48 | -1.69E-46 |
| MS.gene053143 | MS.gene55530 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene55530 | 0.806876 | 6.65E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene55530 | 0.811923 | 5.49E-51 | -1.69E-46 |
| MS.gene053677 | MS.gene55530 | 0.80154 | 8.58E-49 | -1.69E-46 |
| MS.gene054250 | MS.gene55530 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene55530 | 0.828927 | 6.85E-55 | -1.69E-46 |
| MS.gene05462 | MS.gene55530 | 0.82226 | 2.61E-53 | -1.69E-46 |
| MS.gene055311 | MS.gene55530 | 0.84675 | 1.78E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene55530 | 0.822874 | 1.88E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene55530 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene55530 | 0.811425 | 7.04E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene55530 | 0.811854 | 5.68E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene55530 | 0.8252 | 5.34E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene55530 | 0.849973 | 2.29E-60 | -1.69E-46 |
| MS.gene056390 | MS.gene55530 | 0.825576 | 4.35E-54 | -1.69E-46 |
| MS.gene056432 | MS.gene55530 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene55530 | 0.805415 | 1.35E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene55530 | 0.833613 | 4.82E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene55530 | 0.837644 | 4.60E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene55530 | 0.809583 | 1.76E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene55530 | 0.807066 | 6.06E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene55530 | -0.817101 | 3.93E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene55530 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene55530 | 0.801574 | 8.45E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene55530 | 0.806137 | 9.52E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene55530 | 0.806862 | 6.69E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene55530 | 0.838417 | 2.91E-57 | -1.69E-46 |
| MS.gene058292 | MS.gene55530 | 0.807933 | 3.97E-50 | -1.69E-46 |
| MS.gene058330 | MS.gene55530 | 0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene55530 | 0.824852 | 6.45E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene55530 | 0.838519 | 2.74E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene55530 | 0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene55530 | 0.845566 | 3.75E-59 | -1.69E-46 |
| MS.gene058976 | MS.gene55530 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene55530 | 0.813664 | 2.28E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene55530 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene55530 | 0.814815 | 1.27E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene55530 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene55530 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene55530 | 0.812186 | 4.81E-51 | -1.69E-46 |
| MS.gene060463 | MS.gene55530 | 0.829515 | 4.93E-55 | -1.69E-46 |
| MS.gene060465 | MS.gene55530 | 0.835942 | 1.25E-56 | -1.69E-46 |
| MS.gene060563 | MS.gene55530 | 0.830456 | 2.91E-55 | -1.69E-46 |
| MS.gene060702 | MS.gene55530 | 0.832939 | 7.10E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene55530 | 0.802887 | 4.53E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene55530 | 0.847591 | 1.05E-59 | -1.69E-46 |
| MS.gene061055 | MS.gene55530 | 0.838836 | 2.27E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene55530 | 0.812628 | 3.85E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55530.t1 | MTR_6g024135 | 100.000 | 249 | 0 | 0 | 54 | 302 | 1 | 249 | 0.0 | 518 |
| MS.gene55530.t1 | MTR_0167s0060 | 36.612 | 183 | 116 | 0 | 61 | 243 | 6 | 188 | 5.27e-38 | 134 |
| MS.gene55530.t1 | MTR_1g022410 | 42.105 | 171 | 97 | 1 | 61 | 231 | 6 | 174 | 6.90e-38 | 135 |
| MS.gene55530.t1 | MTR_1g112250 | 34.783 | 207 | 120 | 2 | 59 | 256 | 6 | 206 | 2.92e-37 | 133 |
| MS.gene55530.t1 | MTR_7g070070 | 35.071 | 211 | 135 | 2 | 61 | 269 | 5 | 215 | 4.34e-37 | 132 |
| MS.gene55530.t1 | MTR_5g016590 | 35.071 | 211 | 135 | 2 | 61 | 269 | 5 | 215 | 8.03e-37 | 132 |
| MS.gene55530.t1 | MTR_8g464460 | 36.932 | 176 | 109 | 2 | 58 | 231 | 6 | 181 | 1.07e-31 | 118 |
| MS.gene55530.t1 | MTR_2g060830 | 35.227 | 176 | 112 | 2 | 58 | 231 | 6 | 181 | 1.56e-31 | 118 |
| MS.gene55530.t1 | MTR_8g075320 | 35.260 | 173 | 110 | 1 | 61 | 231 | 4 | 176 | 1.00e-28 | 110 |
| MS.gene55530.t1 | MTR_2g016050 | 35.260 | 173 | 110 | 1 | 61 | 231 | 4 | 176 | 2.58e-27 | 107 |
| MS.gene55530.t1 | MTR_4g012740 | 28.571 | 210 | 108 | 4 | 61 | 231 | 237 | 443 | 8.03e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55530.t1 | AT2G27020 | 81.455 | 275 | 50 | 1 | 28 | 302 | 78 | 351 | 1.66e-169 | 474 |
| MS.gene55530.t1 | AT2G27020 | 86.747 | 249 | 33 | 0 | 54 | 302 | 1 | 249 | 2.35e-168 | 467 |
| MS.gene55530.t1 | AT1G47250 | 42.105 | 171 | 97 | 1 | 61 | 231 | 6 | 174 | 2.30e-38 | 137 |
| MS.gene55530.t1 | AT5G42790 | 42.105 | 171 | 97 | 1 | 61 | 231 | 6 | 174 | 5.17e-38 | 136 |
| MS.gene55530.t1 | AT1G16470 | 34.146 | 205 | 134 | 1 | 61 | 264 | 6 | 210 | 8.10e-38 | 134 |
| MS.gene55530.t1 | AT1G16470 | 34.146 | 205 | 134 | 1 | 61 | 264 | 6 | 210 | 8.10e-38 | 134 |
| MS.gene55530.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 61 | 264 | 6 | 210 | 8.91e-38 | 134 |
| MS.gene55530.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 61 | 264 | 6 | 210 | 8.91e-38 | 134 |
| MS.gene55530.t1 | AT1G79210 | 34.146 | 205 | 134 | 1 | 61 | 264 | 6 | 210 | 8.91e-38 | 134 |
| MS.gene55530.t1 | AT3G14290 | 34.783 | 207 | 120 | 2 | 59 | 256 | 6 | 206 | 1.91e-37 | 133 |
| MS.gene55530.t1 | AT1G53850 | 34.300 | 207 | 121 | 2 | 59 | 256 | 6 | 206 | 5.09e-37 | 132 |
| MS.gene55530.t1 | AT1G53850 | 34.300 | 207 | 121 | 2 | 59 | 256 | 6 | 206 | 5.09e-37 | 132 |
| MS.gene55530.t1 | AT3G22110 | 34.783 | 230 | 143 | 5 | 61 | 284 | 5 | 233 | 1.57e-36 | 131 |
| MS.gene55530.t1 | AT5G35590 | 35.227 | 176 | 112 | 2 | 58 | 231 | 6 | 181 | 7.91e-32 | 119 |
| MS.gene55530.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 58 | 231 | 6 | 181 | 7.10e-31 | 115 |
| MS.gene55530.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 58 | 231 | 6 | 181 | 7.73e-31 | 115 |
| MS.gene55530.t1 | AT2G05840 | 35.795 | 176 | 111 | 2 | 58 | 231 | 6 | 181 | 9.52e-31 | 116 |
| MS.gene55530.t1 | AT5G66140 | 34.104 | 173 | 112 | 1 | 61 | 231 | 4 | 176 | 1.09e-27 | 108 |
| MS.gene55530.t1 | AT3G51260 | 34.104 | 173 | 112 | 1 | 61 | 231 | 4 | 176 | 1.42e-27 | 107 |
| MS.gene55530.t1 | AT3G51260 | 34.104 | 173 | 112 | 1 | 61 | 231 | 4 | 176 | 2.07e-27 | 107 |
| MS.gene55530.t1 | AT4G15165 | 30.144 | 209 | 102 | 5 | 61 | 267 | 5 | 171 | 4.02e-20 | 87.0 |
Find 68 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTGCAGGACTGTTAT+TGG | 0.185948 | 6.2:-17413924 | MS.gene55530:intron |
| CCTTCGAAAATGATGCTTTC+GGG | 0.215701 | 6.2:-17413759 | MS.gene55530:CDS |
| TAATGGTGCTGCAGACCTTT+TGG | 0.315162 | 6.2:-17411909 | MS.gene55530:intron |
| ATGCAAGGATGGAATTGTTT+TGG | 0.316941 | 6.2:-17413895 | MS.gene55530:intron |
| CCCTTCGAAAATGATGCTTT+CGG | 0.324696 | 6.2:-17413760 | MS.gene55530:CDS |
| TTGTACATGGTCGAGCCTTC+TGG | 0.359436 | 6.2:-17411843 | MS.gene55530:CDS |
| TTTGTTGCAGGACTGTTATT+GGG | 0.360861 | 6.2:-17413923 | MS.gene55530:intron |
| GCCAAAGCTGTCGACAATAG+TGG | 0.361107 | 6.2:-17414930 | MS.gene55530:CDS |
| ATCTGGAAAACGCGACCATC+AGG | 0.383550 | 6.2:+17414963 | None:intergenic |
| AACGGCGTGAATTCTTCTAT+TGG | 0.385310 | 6.2:+17413734 | None:intergenic |
| TGCACCTCTGCACATTATAC+TGG | 0.388962 | 6.2:-17412017 | MS.gene55530:CDS |
| CTTTGGCAGCGTATTCGATC+TGG | 0.397223 | 6.2:+17414946 | None:intergenic |
| TTGTGCAAATGCAGTATATA+TGG | 0.408846 | 6.2:-17410484 | MS.gene55530:intron |
| GCAAGTTCCTTGACAGGAAT+AGG | 0.410348 | 6.2:+17412060 | None:intergenic |
| CCCACTATTGTCGACAGCTT+TGG | 0.424001 | 6.2:+17414929 | None:intergenic |
| CTACTTCAATTACTCCTTGT+CGG | 0.425657 | 6.2:+17410597 | None:intergenic |
| AGCTAATTTAGCTGCTGTCT+TGG | 0.430728 | 6.2:+17410053 | None:intergenic |
| TTTGGATGTGGTGTCATACT+AGG | 0.432245 | 6.2:-17411891 | MS.gene55530:CDS |
| GCTTCTTCTAGAAGCTCCTC+TGG | 0.439481 | 6.2:+17410075 | None:intergenic |
| CAAGAGTTTAAGATGCAAGT+TGG | 0.439656 | 6.2:+17415145 | None:intergenic |
| AAGTTGGGTCGGATCGGGTT+TGG | 0.450031 | 6.2:+17415161 | None:intergenic |
| TTCAATTACTCCTTGTCGGC+AGG | 0.452082 | 6.2:+17410601 | None:intergenic |
| TTTCAATTCTAGGCTGTAGC+AGG | 0.453786 | 6.2:-17412992 | MS.gene55530:intron |
| GATGCAAGTTGGGTCGGATC+GGG | 0.458839 | 6.2:+17415156 | None:intergenic |
| CACGCCGTTCATCGCCACTC+TGG | 0.470804 | 6.2:-17413720 | MS.gene55530:CDS |
| ATTTCGAACTCGAAATGAGC+TGG | 0.484940 | 6.2:-17410435 | MS.gene55530:CDS |
| ATCATGAGTAGCATTGGAAC+AGG | 0.485653 | 6.2:-17415014 | MS.gene55530:CDS |
| AAGAGTTTAAGATGCAAGTT+GGG | 0.486942 | 6.2:+17415146 | None:intergenic |
| ATCAAACCGTCAACATGAAA+AGG | 0.490739 | 6.2:-17410401 | MS.gene55530:intron |
| TCAGCAATCATGAGTAGCAT+TGG | 0.498196 | 6.2:-17415020 | MS.gene55530:CDS |
| CTGAAGCAACTAACTACGAC+AGG | 0.504390 | 6.2:-17412928 | MS.gene55530:intron |
| TGCAATCGGGAAGGGCAGAC+AGG | 0.508389 | 6.2:-17411667 | MS.gene55530:CDS |
| AGATGCAAGTTGGGTCGGAT+CGG | 0.524058 | 6.2:+17415155 | None:intergenic |
| CGATCAGCAAGTTCCTTGAC+AGG | 0.525955 | 6.2:+17412054 | None:intergenic |
| GTCACTACTTTCTCTCCTGA+TGG | 0.533196 | 6.2:-17414978 | MS.gene55530:CDS |
| GCACATTATACTGGTGGCTC+AGG | 0.538022 | 6.2:-17412008 | MS.gene55530:intron |
| ATGGAAGGCAAATTGTCGCT+AGG | 0.543790 | 6.2:-17412958 | MS.gene55530:CDS |
| CAGGATTAGCTGCAGATGGA+AGG | 0.556190 | 6.2:-17412973 | MS.gene55530:CDS |
| GTTTAAGATGCAAGTTGGGT+CGG | 0.562977 | 6.2:+17415150 | None:intergenic |
| AGTATGACACCACATCCAAA+AGG | 0.565132 | 6.2:+17411894 | None:intergenic |
| CCAAAGCTGTCGACAATAGT+GGG | 0.566060 | 6.2:-17414929 | MS.gene55530:intron |
| TTTGGTGCTGCAATCGGGAA+GGG | 0.566694 | 6.2:-17411675 | MS.gene55530:CDS |
| TAAATTAGCTCTCGAAGAGA+TGG | 0.574396 | 6.2:-17410040 | MS.gene55530:CDS |
| CGGTGATCCTATTCCTGTCA+AGG | 0.577799 | 6.2:-17412067 | MS.gene55530:CDS |
| TGGAAGGCAAATTGTCGCTA+GGG | 0.578142 | 6.2:-17412957 | MS.gene55530:CDS |
| TGGAGTTCATGACGAGGCAA+AGG | 0.579021 | 6.2:-17410464 | MS.gene55530:CDS |
| CGTTCATCGCCACTCTGGAA+TGG | 0.579273 | 6.2:-17413715 | MS.gene55530:intron |
| CATTCCAGAGTGGCGATGAA+CGG | 0.580559 | 6.2:+17413716 | None:intergenic |
| GTAGCAGGATTAGCTGCAGA+TGG | 0.580997 | 6.2:-17412977 | MS.gene55530:CDS |
| GATTGAAAAGTTGAAGCTTG+CGG | 0.589401 | 6.2:-17410630 | MS.gene55530:CDS |
| ACCTCTGCACATTATACTGG+TGG | 0.589474 | 6.2:-17412014 | MS.gene55530:CDS |
| GATCGGGTTTGGATCTAACA+TGG | 0.592492 | 6.2:+17415172 | None:intergenic |
| ATTGGGATCAGATGCAAGGA+TGG | 0.596379 | 6.2:-17413906 | MS.gene55530:CDS |
| GCGGATATGACCTGCCGACA+AGG | 0.597273 | 6.2:-17410611 | MS.gene55530:CDS |
| ATCGGGTTTGGATCTAACAT+GGG | 0.606897 | 6.2:+17415173 | None:intergenic |
| TTTCGAACTCGAAATGAGCT+GGG | 0.612900 | 6.2:-17410434 | MS.gene55530:CDS |
| ATCAGGAGAGAAAGTAGTGA+CGG | 0.617907 | 6.2:+17414980 | None:intergenic |
| GGCTCGACCATGTACAATTG+TGG | 0.619168 | 6.2:+17411849 | None:intergenic |
| TAATCGTGTGCAGGTTCCAG+AGG | 0.624038 | 6.2:-17410091 | MS.gene55530:intron |
| AGATGGACCACAATTGTACA+TGG | 0.629708 | 6.2:-17411856 | MS.gene55530:CDS |
| CTAGGTGGTTACGACAGAGA+TGG | 0.638286 | 6.2:-17411873 | MS.gene55530:CDS |
| TGTTATTGGGATCAGATGCA+AGG | 0.646757 | 6.2:-17413910 | MS.gene55530:CDS |
| CAAGGAACTTGCTGATCGTG+TGG | 0.647625 | 6.2:-17412049 | MS.gene55530:CDS |
| GGATGTGGTGTCATACTAGG+TGG | 0.653371 | 6.2:-17411888 | MS.gene55530:CDS |
| GCCACCAGTATAATGTGCAG+AGG | 0.679994 | 6.2:+17412013 | None:intergenic |
| CTTACATAGGAGACACCAGA+AGG | 0.684192 | 6.2:+17411828 | None:intergenic |
| AACAAAGTACCATTCCAGAG+TGG | 0.731365 | 6.2:+17413706 | None:intergenic |
| TATATATGGAGTTCATGACG+AGG | 0.744573 | 6.2:-17410470 | MS.gene55530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATTATTAATTAA+AGG | - | chr6.2:17411133-17411152 | MS.gene55530:intron | 0.0% |
| !! | AAAAAAATCAAAAATTAAAC+AGG | + | chr6.2:17411370-17411389 | None:intergenic | 10.0% |
| !! | CAATAATAAGTAATAAAAAA+GGG | + | chr6.2:17412706-17412725 | None:intergenic | 10.0% |
| !! | TACATTTAATTAACAAAAAA+AGG | + | chr6.2:17414451-17414470 | None:intergenic | 10.0% |
| !! | TTGATAAATATAAAAAATAC+TGG | - | chr6.2:17414143-17414162 | MS.gene55530:intron | 10.0% |
| !!! | TTCTTTTAATTACTTATATA+TGG | - | chr6.2:17414866-17414885 | MS.gene55530:intron | 10.0% |
| !! | AGAAAATGAATATTATTTAC+AGG | + | chr6.2:17413674-17413693 | None:intergenic | 15.0% |
| !! | ATAAAATAATGTACATGTTT+AGG | + | chr6.2:17412348-17412367 | None:intergenic | 15.0% |
| !! | GCAATAATAAGTAATAAAAA+AGG | + | chr6.2:17412707-17412726 | None:intergenic | 15.0% |
| !! | TAATAAGTATCTTACATATA+AGG | + | chr6.2:17413829-17413848 | None:intergenic | 15.0% |
| !! | TGATTCTCAAAATTTATAAA+CGG | + | chr6.2:17413754-17413773 | None:intergenic | 15.0% |
| !!! | AGTTCATATTTTTATGTTTA+TGG | - | chr6.2:17414988-17415007 | MS.gene55530:CDS | 15.0% |
| !!! | ATTTTAAGAATTGGAATTAA+GGG | - | chr6.2:17411164-17411183 | MS.gene55530:intron | 15.0% |
| !!! | GCAATTGAATTTTTATTTTT+AGG | - | chr6.2:17410414-17410433 | MS.gene55530:CDS | 15.0% |
| !!! | GTAGTTTTTATTTTAAGAAT+TGG | - | chr6.2:17411199-17411218 | MS.gene55530:intron | 15.0% |
| !!! | GTTTTAGTTATTTTAAGAAT+TGG | - | chr6.2:17411155-17411174 | MS.gene55530:intron | 15.0% |
| !!! | TATTAATAACCGATTTATAA+TGG | - | chr6.2:17413273-17413292 | MS.gene55530:intron | 15.0% |
| !!! | TATTTTAAGAATTGGAATTA+AGG | - | chr6.2:17411163-17411182 | MS.gene55530:intron | 15.0% |
| !!! | TGAAATGTAGTTTTATTTTA+AGG | - | chr6.2:17411051-17411070 | MS.gene55530:intron | 15.0% |
| !!! | TTAAGTTATTTTCAACTATA+TGG | + | chr6.2:17412447-17412466 | None:intergenic | 15.0% |
| !!! | TTTATTTTAAGGTTTTTGTT+TGG | - | chr6.2:17411062-17411081 | MS.gene55530:intron | 15.0% |
| !! | ATGTAAGATACTTATTAGAA+TGG | - | chr6.2:17413832-17413851 | MS.gene55530:intron | 20.0% |
| !! | GAAATAATGTAAACTTACAT+AGG | + | chr6.2:17413387-17413406 | None:intergenic | 20.0% |
| !! | GAAGAAAAAGAAAAAGAAAA+AGG | + | chr6.2:17410108-17410127 | None:intergenic | 20.0% |
| !! | GTTATTATATTATTGTTCAG+TGG | - | chr6.2:17414412-17414431 | MS.gene55530:intron | 20.0% |
| !! | TAAAATACAAATAAACACAC+TGG | + | chr6.2:17411801-17411820 | None:intergenic | 20.0% |
| !! | TAACATAGACAGTAATTAAA+AGG | + | chr6.2:17413611-17413630 | None:intergenic | 20.0% |
| !! | TGTAAAACAAAATTCTGATA+TGG | + | chr6.2:17414520-17414539 | None:intergenic | 20.0% |
| !! | TTAACTGCGTTATATTATAT+TGG | + | chr6.2:17411988-17412007 | None:intergenic | 20.0% |
| !! | TTTAATTACTGTCTATGTTA+GGG | - | chr6.2:17413611-17413630 | MS.gene55530:intron | 20.0% |
| !!! | AAACTTTAAACGCAATATTT+TGG | - | chr6.2:17414023-17414042 | MS.gene55530:intron | 20.0% |
| !!! | AATTTGATAACTTGAAATAG+AGG | - | chr6.2:17412829-17412848 | MS.gene55530:intron | 20.0% |
| !!! | ACTTTTTTAGATACTAGTTT+TGG | - | chr6.2:17410990-17411009 | MS.gene55530:intron | 20.0% |
| !!! | AGATTGTTATTCTGATAATT+TGG | - | chr6.2:17411338-17411357 | MS.gene55530:intron | 20.0% |
| !!! | AGTTTTTTATTTTAGGTTTG+AGG | - | chr6.2:17410933-17410952 | MS.gene55530:intron | 20.0% |
| !!! | ATAATCTTTAGAGTTAAAAG+GGG | + | chr6.2:17412675-17412694 | None:intergenic | 20.0% |
| !!! | ATTGTTATTCTGATAATTTG+GGG | - | chr6.2:17411340-17411359 | MS.gene55530:intron | 20.0% |
| !!! | ATTTTAAGAATTGGAATTGA+GGG | - | chr6.2:17411208-17411227 | MS.gene55530:intron | 20.0% |
| !!! | ATTTTTTGTGATGTTAATCA+TGG | - | chr6.2:17410352-17410371 | MS.gene55530:intron | 20.0% |
| !!! | CTTTTTTAGATACTAGTTTT+GGG | - | chr6.2:17410991-17411010 | MS.gene55530:intron | 20.0% |
| !!! | GATAATCTTTAGAGTTAAAA+GGG | + | chr6.2:17412676-17412695 | None:intergenic | 20.0% |
| !!! | GATTGTTATTCTGATAATTT+GGG | - | chr6.2:17411339-17411358 | MS.gene55530:intron | 20.0% |
| !!! | GGTTTTGTTATTTTAAGATT+TGG | - | chr6.2:17410902-17410921 | MS.gene55530:intron | 20.0% |
| !!! | GTTTTTGGATTTTGAATTAT+GGG | - | chr6.2:17410384-17410403 | MS.gene55530:intron | 20.0% |
| !!! | TATTTTAAGAATTGGAATTG+AGG | - | chr6.2:17411207-17411226 | MS.gene55530:intron | 20.0% |
| !!! | TGATAATCTTTAGAGTTAAA+AGG | + | chr6.2:17412677-17412696 | None:intergenic | 20.0% |
| !!! | TGTTAATTTTTGTGCAAATT+TGG | - | chr6.2:17411389-17411408 | MS.gene55530:intron | 20.0% |
| !!! | TGTTTATTTGTATTTTACCT+TGG | - | chr6.2:17411804-17411823 | MS.gene55530:intron | 20.0% |
| !!! | TGTTTTTGGATTTTGAATTA+TGG | - | chr6.2:17410383-17410402 | MS.gene55530:intron | 20.0% |
| !!! | TTTTAATTACTGTCTATGTT+AGG | - | chr6.2:17413610-17413629 | MS.gene55530:intron | 20.0% |
| !!! | TTTTTTGTGATGTTAATCAT+GGG | - | chr6.2:17410353-17410372 | MS.gene55530:intron | 20.0% |
| ! | AAACTAAGATAACATGTTAG+AGG | - | chr6.2:17412799-17412818 | MS.gene55530:intron | 25.0% |
| ! | AACCTAAAATAAAAAACTGC+AGG | + | chr6.2:17410931-17410950 | None:intergenic | 25.0% |
| ! | AATCTATAAGAGAAACTGTT+AGG | - | chr6.2:17410718-17410737 | MS.gene55530:intron | 25.0% |
| ! | AATTAAATGTAACTCTTCTG+TGG | - | chr6.2:17414460-17414479 | MS.gene55530:intron | 25.0% |
| ! | AGATTTGGAAATTAATGTGT+TGG | - | chr6.2:17410743-17410762 | MS.gene55530:intron | 25.0% |
| ! | AGGAATTAGACCTATTATAT+CGG | - | chr6.2:17412556-17412575 | MS.gene55530:intron | 25.0% |
| ! | ATAATGATCTCATTATTCTG+AGG | - | chr6.2:17413048-17413067 | MS.gene55530:intron | 25.0% |
| ! | ATATTATTTACAGGAAGCAA+AGG | + | chr6.2:17413665-17413684 | None:intergenic | 25.0% |
| ! | ATCAAATTCAATCACAAAGA+TGG | + | chr6.2:17412392-17412411 | None:intergenic | 25.0% |
| ! | ATGTTCTGTAATATGCATTA+TGG | - | chr6.2:17410880-17410899 | MS.gene55530:intron | 25.0% |
| ! | ATTAATTGCTAATGTTGAAG+TGG | - | chr6.2:17411626-17411645 | MS.gene55530:intron | 25.0% |
| ! | ATTCTTAAACTACAGTACAT+TGG | + | chr6.2:17412045-17412064 | None:intergenic | 25.0% |
| ! | TAATAAGTAACAACAAACAC+TGG | + | chr6.2:17414654-17414673 | None:intergenic | 25.0% |
| ! | TACATGTTTAGGTCAAATAA+AGG | + | chr6.2:17412337-17412356 | None:intergenic | 25.0% |
| ! | TAGTTTGGACAAATAACATT+TGG | + | chr6.2:17412785-17412804 | None:intergenic | 25.0% |
| ! | TCAGTACAAATAAATTCACA+TGG | + | chr6.2:17413472-17413491 | None:intergenic | 25.0% |
| ! | TCTAACATGTTATCTTAGTT+TGG | + | chr6.2:17412800-17412819 | None:intergenic | 25.0% |
| ! | TGAATCAATACCGATATAAT+AGG | + | chr6.2:17412569-17412588 | None:intergenic | 25.0% |
| ! | TGTTCTGTAATATGCATTAT+GGG | - | chr6.2:17410881-17410900 | MS.gene55530:intron | 25.0% |
| ! | TTAACTTCGTAATCAAAACA+AGG | + | chr6.2:17412470-17412489 | None:intergenic | 25.0% |
| ! | TTATATTATTGTTCAGTGGA+TGG | - | chr6.2:17414416-17414435 | MS.gene55530:intron | 25.0% |
| ! | TTCTATCATTCACCAAATTT+CGG | + | chr6.2:17410770-17410789 | None:intergenic | 25.0% |
| !! | AGGACATGTCAAATTATTTT+AGG | - | chr6.2:17412639-17412658 | MS.gene55530:intron | 25.0% |
| !! | GTTTCTCTTATAGATTTTCT+AGG | + | chr6.2:17410714-17410733 | None:intergenic | 25.0% |
| !! | TCAGTAGTTATTTGATAACA+TGG | + | chr6.2:17413710-17413729 | None:intergenic | 25.0% |
| !! | TTGCATAGAATTGTAGTTTT+TGG | - | chr6.2:17415048-17415067 | MS.gene55530:CDS | 25.0% |
| !! | TTGTTATTCTGATAATTTGG+GGG | - | chr6.2:17411341-17411360 | MS.gene55530:intron | 25.0% |
| !!! | AACCTGCAGTTTTTTATTTT+AGG | - | chr6.2:17410926-17410945 | MS.gene55530:intron | 25.0% |
| !!! | ACGTATCTTTTTTCAATTCT+AGG | - | chr6.2:17412197-17412216 | MS.gene55530:intron | 25.0% |
| !!! | ATTTGAGTTACTTTTATGCA+AGG | - | chr6.2:17414835-17414854 | MS.gene55530:intron | 25.0% |
| !!! | CATTTTTTTCAGAGGTATTT+TGG | - | chr6.2:17413506-17413525 | MS.gene55530:intron | 25.0% |
| !!! | CGATTGATTTTGAGTTTTTT+TGG | + | chr6.2:17410141-17410160 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTCTTTTAGGAAT+TGG | - | chr6.2:17410506-17410525 | MS.gene55530:intron | 25.0% |
| !!! | TAATGGGTTTTGTTTCTTTT+AGG | - | chr6.2:17410500-17410519 | MS.gene55530:intron | 25.0% |
| !!! | TGCAAATTTGGTTGATTTTA+GGG | - | chr6.2:17411401-17411420 | MS.gene55530:intron | 25.0% |
| !!! | TTCATCTGTTTGATTTGTAT+TGG | - | chr6.2:17414920-17414939 | MS.gene55530:intron | 25.0% |
| !!! | TTGTACTGATTTGTTTGTAT+TGG | - | chr6.2:17413483-17413502 | MS.gene55530:intron | 25.0% |
| AAGTAATAGTTGCAAGCAAA+TGG | + | chr6.2:17412303-17412322 | None:intergenic | 30.0% | |
| ACAGCTATGAACAATAATTG+TGG | - | chr6.2:17413582-17413601 | MS.gene55530:intron | 30.0% | |
| AGAAACTGTTAGGAAAGATT+TGG | - | chr6.2:17410728-17410747 | MS.gene55530:intron | 30.0% | |
| AGAGATTAAGAAAAAACTGC+AGG | - | chr6.2:17414207-17414226 | MS.gene55530:intron | 30.0% | |
| ATAACTTGAAATAGAGGTGA+AGG | - | chr6.2:17412835-17412854 | MS.gene55530:intron | 30.0% | |
| ATAATAAGGTTGTTCAAGAG+TGG | + | chr6.2:17412601-17412620 | None:intergenic | 30.0% | |
| ATCAAATAACTACTGAGTTC+CGG | - | chr6.2:17413714-17413733 | MS.gene55530:intron | 30.0% | |
| ATGCTGCTATAATAGTTAGA+TGG | - | chr6.2:17412410-17412429 | MS.gene55530:intron | 30.0% | |
| ATGTTTAGGTCAAATAAAGG+AGG | + | chr6.2:17412334-17412353 | None:intergenic | 30.0% | |
| CACAAAAAATCGACAAAAGA+TGG | + | chr6.2:17410342-17410361 | None:intergenic | 30.0% | |
| GACGTATATATTGTGTAGTA+AGG | - | chr6.2:17410641-17410660 | MS.gene55530:intron | 30.0% | |
| GGTCGTTCTATATAATATGT+AGG | + | chr6.2:17411877-17411896 | None:intergenic | 30.0% | |
| GTATTCCTCAAGGAAAAAAA+CGG | - | chr6.2:17412525-17412544 | MS.gene55530:intron | 30.0% | |
| TCAAACAGATGAAACAAATG+TGG | + | chr6.2:17414913-17414932 | None:intergenic | 30.0% | |
| TCTTGTTACTGTCTTTCATT+TGG | - | chr6.2:17411536-17411555 | MS.gene55530:intron | 30.0% | |
| TGGTGAATGATAGAACATTA+TGG | - | chr6.2:17410775-17410794 | MS.gene55530:intron | 30.0% | |
| TTGTGCAAATGCAGTATATA+TGG | - | chr6.2:17414715-17414734 | MS.gene55530:intron | 30.0% | |
| ! | AAGAGTTTAAGATGCAAGTT+GGG | + | chr6.2:17410056-17410075 | None:intergenic | 30.0% |
| ! | AGCTAGTGATTTTTGATAGA+TGG | - | chr6.2:17410579-17410598 | MS.gene55530:intron | 30.0% |
| ! | CAACTTTTCTCATCAAGTTT+TGG | - | chr6.2:17410308-17410327 | MS.gene55530:intron | 30.0% |
| ! | TAGATTTGAAACTTTGTTGC+AGG | - | chr6.2:17411264-17411283 | MS.gene55530:intron | 30.0% |
| ! | TAGTGATTTTTGATAGATGG+TGG | - | chr6.2:17410582-17410601 | MS.gene55530:intron | 30.0% |
| ! | TTTTTCCTTGAGGAATACAT+CGG | + | chr6.2:17412523-17412542 | None:intergenic | 30.0% |
| !! | ATTTTACCTTGGTAGTTCTA+TGG | - | chr6.2:17411815-17411834 | MS.gene55530:intron | 30.0% |
| !! | CTTTTAGGAATTGGAATCAA+GGG | - | chr6.2:17410515-17410534 | MS.gene55530:intron | 30.0% |
| !! | GTGCAAATTTGGTTGATTTT+AGG | - | chr6.2:17411400-17411419 | MS.gene55530:intron | 30.0% |
| !! | TCTTTTAGGAATTGGAATCA+AGG | - | chr6.2:17410514-17410533 | MS.gene55530:intron | 30.0% |
| !! | TTTTACCTTGGTAGTTCTAT+GGG | - | chr6.2:17411816-17411835 | MS.gene55530:intron | 30.0% |
| !! | TTTTAGGAATTGGAATCAAG+GGG | - | chr6.2:17410516-17410535 | MS.gene55530:intron | 30.0% |
| !!! | TAGATACTAGTTTTGGGTTT+TGG | - | chr6.2:17410997-17411016 | MS.gene55530:intron | 30.0% |
| !!! | TGTATTGGCATTTTTTTCAG+AGG | - | chr6.2:17413498-17413517 | MS.gene55530:intron | 30.0% |
| AAACTTGAATGCATTTCGAC+AGG | + | chr6.2:17415028-17415047 | None:intergenic | 35.0% | |
| AACTTGAATGCATTTCGACA+GGG | + | chr6.2:17415027-17415046 | None:intergenic | 35.0% | |
| AAGTCTATCACGTTTCTTTC+TGG | + | chr6.2:17411596-17411615 | None:intergenic | 35.0% | |
| ACTACTGCACAAAGAAATGA+TGG | + | chr6.2:17414097-17414116 | None:intergenic | 35.0% | |
| AGGAATACATCGGTAAATGA+TGG | + | chr6.2:17412513-17412532 | None:intergenic | 35.0% | |
| AGTAAGGAGAGTAAATCAGA+TGG | - | chr6.2:17410657-17410676 | MS.gene55530:intron | 35.0% | |
| ATCAAACCGTCAACATGAAA+AGG | - | chr6.2:17414798-17414817 | MS.gene55530:intron | 35.0% | |
| ATCTTGTGAATGTCTTTGCA+GGG | - | chr6.2:17414545-17414564 | MS.gene55530:intron | 35.0% | |
| ATTCAAAGTTGTGCACATAC+TGG | + | chr6.2:17414051-17414070 | None:intergenic | 35.0% | |
| ATTTACCGATGTATTCCTCA+AGG | - | chr6.2:17412515-17412534 | MS.gene55530:intron | 35.0% | |
| CAAACACGATTGCTATCTAA+AGG | - | chr6.2:17412727-17412746 | MS.gene55530:intron | 35.0% | |
| CATTGTCACTGAAATAATCG+CGG | - | chr6.2:17411954-17411973 | MS.gene55530:intron | 35.0% | |
| CATTTCTTTGTGCAGTAGTA+TGG | - | chr6.2:17414098-17414117 | MS.gene55530:intron | 35.0% | |
| CCCAATTTGAAAACGATTCA+CGG | - | chr6.2:17411895-17411914 | MS.gene55530:CDS | 35.0% | |
| CTAAGAGTGAAAGATTGTGA+AGG | - | chr6.2:17411665-17411684 | MS.gene55530:CDS | 35.0% | |
| CTACTTCAATTACTCCTTGT+CGG | + | chr6.2:17414605-17414624 | None:intergenic | 35.0% | |
| CTTTAGATAGCAATCGTGTT+TGG | + | chr6.2:17412729-17412748 | None:intergenic | 35.0% | |
| GAGAAGACGAATGTTTATTC+TGG | - | chr6.2:17413087-17413106 | MS.gene55530:intron | 35.0% | |
| GATTGAAAAGTTGAAGCTTG+CGG | - | chr6.2:17414569-17414588 | MS.gene55530:intron | 35.0% | |
| GGAATACATCGGTAAATGAT+GGG | + | chr6.2:17412512-17412531 | None:intergenic | 35.0% | |
| TAATGTGTTGGACCGAAATT+TGG | - | chr6.2:17410755-17410774 | MS.gene55530:intron | 35.0% | |
| TATATATGGAGTTCATGACG+AGG | - | chr6.2:17414729-17414748 | MS.gene55530:intron | 35.0% | |
| TATCTTGTGAATGTCTTTGC+AGG | - | chr6.2:17414544-17414563 | MS.gene55530:intron | 35.0% | |
| TCGCTTGAGATTTGAAAGTA+AGG | - | chr6.2:17411021-17411040 | MS.gene55530:intron | 35.0% | |
| TCTGCAGCACCATTATAAAT+CGG | + | chr6.2:17413285-17413304 | None:intergenic | 35.0% | |
| TTTGTTGCAGGACTGTTATT+GGG | - | chr6.2:17411276-17411295 | MS.gene55530:intron | 35.0% | |
| ! | AAACACTGCTTGATGATTGA+TGG | - | chr6.2:17412921-17412940 | MS.gene55530:intron | 35.0% |
| ! | ACAATTGAACCTTTTCTCAC+TGG | + | chr6.2:17414340-17414359 | None:intergenic | 35.0% |
| ! | ATGCAAGGATGGAATTGTTT+TGG | - | chr6.2:17411304-17411323 | MS.gene55530:intron | 35.0% |
| ! | ATGGTGGAAAATATGCTTAG+GGG | - | chr6.2:17410598-17410617 | MS.gene55530:CDS | 35.0% |
| ! | ATGTTTCTTTTCAGCGTGTA+CGG | - | chr6.2:17413112-17413131 | MS.gene55530:intron | 35.0% |
| ! | CAAGAGTTTAAGATGCAAGT+TGG | + | chr6.2:17410057-17410076 | None:intergenic | 35.0% |
| ! | CAATTGAACCTTTTCTCACT+GGG | + | chr6.2:17414339-17414358 | None:intergenic | 35.0% |
| ! | CACTGAATGATCTTTTCGAT+TGG | - | chr6.2:17411733-17411752 | MS.gene55530:intron | 35.0% |
| ! | CCGTGAATCGTTTTCAAATT+GGG | + | chr6.2:17411898-17411917 | None:intergenic | 35.0% |
| ! | CTTTTCCTACTATGTGGAAT+CGG | + | chr6.2:17410820-17410839 | None:intergenic | 35.0% |
| ! | GTGATGTTAATCATGGGTTT+TGG | - | chr6.2:17410359-17410378 | MS.gene55530:intron | 35.0% |
| ! | TAAATTAGCTCTCGAAGAGA+TGG | - | chr6.2:17415159-17415178 | MS.gene55530:CDS | 35.0% |
| ! | TACTTTGTTGTCTCTTGCTT+TGG | + | chr6.2:17412947-17412966 | None:intergenic | 35.0% |
| ! | TGGAATTGAGGGTTTTTGTT+TGG | - | chr6.2:17411219-17411238 | MS.gene55530:intron | 35.0% |
| ! | TGGTAATAAGTGTTGTCAGA+GGG | - | chr6.2:17414163-17414182 | MS.gene55530:intron | 35.0% |
| !! | AGATGGTGGAAAATATGCTT+AGG | - | chr6.2:17410596-17410615 | MS.gene55530:CDS | 35.0% |
| !! | CTTCAAAAGAAGAGCATCTA+AGG | + | chr6.2:17413951-17413970 | None:intergenic | 35.0% |
| !! | GAGTTGATTTGGACTATCTT+TGG | - | chr6.2:17414252-17414271 | MS.gene55530:intron | 35.0% |
| !! | GATGGTGGAAAATATGCTTA+GGG | - | chr6.2:17410597-17410616 | MS.gene55530:CDS | 35.0% |
| !! | TGCAAGTTTTGTCTCATATG+CGG | - | chr6.2:17413971-17413990 | MS.gene55530:intron | 35.0% |
| !!! | AACTACCGTTTTTTTCCTTG+AGG | + | chr6.2:17412533-17412552 | None:intergenic | 35.0% |
| !!! | TCATGGGTTTTGGTTGTTTT+TGG | - | chr6.2:17410369-17410388 | MS.gene55530:intron | 35.0% |
| AACGGCGTGAATTCTTCTAT+TGG | + | chr6.2:17411468-17411487 | None:intergenic | 40.0% | |
| AAGGAGAGTAAATCAGATGG+AGG | - | chr6.2:17410660-17410679 | MS.gene55530:intron | 40.0% | |
| ACCGTCAACATGAAAAGGTA+AGG | - | chr6.2:17414803-17414822 | MS.gene55530:intron | 40.0% | |
| AGATGGACCACAATTGTACA+TGG | - | chr6.2:17413343-17413362 | MS.gene55530:intron | 40.0% | |
| AGCTAATTTAGCTGCTGTCT+TGG | + | chr6.2:17415149-17415168 | None:intergenic | 40.0% | |
| AGTATGACACCACATCCAAA+AGG | + | chr6.2:17413308-17413327 | None:intergenic | 40.0% | |
| ATCAGGAGAGAAAGTAGTGA+CGG | + | chr6.2:17410222-17410241 | None:intergenic | 40.0% | |
| ATTTCGAACTCGAAATGAGC+TGG | - | chr6.2:17414764-17414783 | MS.gene55530:intron | 40.0% | |
| ATTTGAAAACGATTCACGGC+CGG | - | chr6.2:17411899-17411918 | MS.gene55530:intron | 40.0% | |
| CAACATGAAAAGGTAAGGCA+GGG | - | chr6.2:17414808-17414827 | MS.gene55530:intron | 40.0% | |
| CCCTTCGAAAATGATGCTTT+CGG | - | chr6.2:17411439-17411458 | MS.gene55530:intron | 40.0% | |
| CCTTCGAAAATGATGCTTTC+GGG | - | chr6.2:17411440-17411459 | MS.gene55530:intron | 40.0% | |
| CGATTCCACATAGTAGGAAA+AGG | - | chr6.2:17410818-17410837 | MS.gene55530:intron | 40.0% | |
| CTACGAAATTAATCGTGTGC+AGG | - | chr6.2:17415099-17415118 | MS.gene55530:CDS | 40.0% | |
| CTTATCCCATAGAACTACCA+AGG | + | chr6.2:17411824-17411843 | None:intergenic | 40.0% | |
| CTTTGTTGCAGGACTGTTAT+TGG | - | chr6.2:17411275-17411294 | MS.gene55530:intron | 40.0% | |
| GAAAATATGCTTAGGGGGTT+TGG | - | chr6.2:17410604-17410623 | MS.gene55530:CDS | 40.0% | |
| GGAAAAAAACGGTAGTTGCT+AGG | - | chr6.2:17412536-17412555 | MS.gene55530:intron | 40.0% | |
| GGAGGATAGTAGATAACTAG+AGG | - | chr6.2:17410678-17410697 | MS.gene55530:intron | 40.0% | |
| GGAGGGTAAGTCAATAAGTA+GGG | - | chr6.2:17414184-17414203 | MS.gene55530:intron | 40.0% | |
| GGTAGCATTAAGTAGAAGCA+GGG | - | chr6.2:17411754-17411773 | MS.gene55530:intron | 40.0% | |
| TAAGCCATGACAAGGAACTA+TGG | - | chr6.2:17414278-17414297 | MS.gene55530:intron | 40.0% | |
| TAAGTAGAAGCAGGGTTCTA+AGG | - | chr6.2:17411762-17411781 | MS.gene55530:intron | 40.0% | |
| TAGTAGATAACTAGAGGCAG+AGG | - | chr6.2:17410684-17410703 | MS.gene55530:intron | 40.0% | |
| TCAACATGAAAAGGTAAGGC+AGG | - | chr6.2:17414807-17414826 | MS.gene55530:intron | 40.0% | |
| TCAGCAATCATGAGTAGCAT+TGG | - | chr6.2:17410179-17410198 | MS.gene55530:intron | 40.0% | |
| TGAACATAGAACAAAGAGCC+CGG | + | chr6.2:17411921-17411940 | None:intergenic | 40.0% | |
| TGGTAGCATTAAGTAGAAGC+AGG | - | chr6.2:17411753-17411772 | MS.gene55530:intron | 40.0% | |
| TGGTGGAAAATATGCTTAGG+GGG | - | chr6.2:17410599-17410618 | MS.gene55530:CDS | 40.0% | |
| TGTTATTGGGATCAGATGCA+AGG | - | chr6.2:17411289-17411308 | MS.gene55530:intron | 40.0% | |
| TGTTCTATCCTAACACGTGT+AGG | - | chr6.2:17413242-17413261 | MS.gene55530:intron | 40.0% | |
| TTTCAATTCTAGGCTGTAGC+AGG | - | chr6.2:17412207-17412226 | MS.gene55530:intron | 40.0% | |
| TTTCGAACTCGAAATGAGCT+GGG | - | chr6.2:17414765-17414784 | MS.gene55530:intron | 40.0% | |
| TTTGGACATAAGCCATGACA+AGG | - | chr6.2:17414270-17414289 | MS.gene55530:intron | 40.0% | |
| ! | AACAAAGTACCATTCCAGAG+TGG | + | chr6.2:17411496-17411515 | None:intergenic | 40.0% |
| ! | AATAAGTGTTGTCAGAGGGA+GGG | - | chr6.2:17414167-17414186 | MS.gene55530:intron | 40.0% |
| ! | AGCGAGATTGAGAGTTGATT+TGG | - | chr6.2:17414241-17414260 | MS.gene55530:intron | 40.0% |
| ! | ATCATGAGTAGCATTGGAAC+AGG | - | chr6.2:17410185-17410204 | MS.gene55530:intron | 40.0% |
| ! | CTGGTAATAAGTGTTGTCAG+AGG | - | chr6.2:17414162-17414181 | MS.gene55530:intron | 40.0% |
| ! | GCCGTGAATCGTTTTCAAAT+TGG | + | chr6.2:17411899-17411918 | None:intergenic | 40.0% |
| ! | GCCTTACCTTTTCATGTTGA+CGG | + | chr6.2:17414807-17414826 | None:intergenic | 40.0% |
| ! | GTTTAAGATGCAAGTTGGGT+CGG | + | chr6.2:17410052-17410071 | None:intergenic | 40.0% |
| ! | TAATAAGTGTTGTCAGAGGG+AGG | - | chr6.2:17414166-17414185 | MS.gene55530:intron | 40.0% |
| ! | TAGGTTGAGGCATGAACAAA+GGG | + | chr6.2:17413912-17413931 | None:intergenic | 40.0% |
| ! | TGAAGTATCCTACACGTGTT+AGG | + | chr6.2:17413253-17413272 | None:intergenic | 40.0% |
| !! | TCGGTATTGATTCAACCTTC+TGG | - | chr6.2:17412575-17412594 | MS.gene55530:intron | 40.0% |
| !! | TTTGGATGTGGTGTCATACT+AGG | - | chr6.2:17413308-17413327 | MS.gene55530:intron | 40.0% |
| !! | TTTTGAGAATCAGCTGCTGA+AGG | - | chr6.2:17413762-17413781 | MS.gene55530:CDS | 40.0% |
| !!! | AGGTATTTTGGTGCTGCAAT+CGG | - | chr6.2:17413518-17413537 | MS.gene55530:intron | 40.0% |
| !!! | CCGAAAGCATCATTTTCGAA+GGG | + | chr6.2:17411442-17411461 | None:intergenic | 40.0% |
| AAGGGGGGTAGAAGAAAACA+TGG | + | chr6.2:17413894-17413913 | None:intergenic | 45.0% | |
| ACCTCTGCACATTATACTGG+TGG | - | chr6.2:17413185-17413204 | MS.gene55530:intron | 45.0% | |
| ACTACTGAGTTCCGGTTACA+TGG | - | chr6.2:17413722-17413741 | MS.gene55530:CDS | 45.0% | |
| AGGTTGAGGCATGAACAAAG+GGG | + | chr6.2:17413911-17413930 | None:intergenic | 45.0% | |
| AGGTTTCAAAGCGCACAAGT+AGG | + | chr6.2:17413931-17413950 | None:intergenic | 45.0% | |
| AGTTAAGTTCTGTGAGCACC+TGG | - | chr6.2:17412002-17412021 | MS.gene55530:intron | 45.0% | |
| ATGCATTTCGACAGGGATTG+TGG | + | chr6.2:17415020-17415039 | None:intergenic | 45.0% | |
| ATGGAAGGCAAATTGTCGCT+AGG | - | chr6.2:17412241-17412260 | MS.gene55530:intron | 45.0% | |
| ATTGGGATCAGATGCAAGGA+TGG | - | chr6.2:17411293-17411312 | MS.gene55530:intron | 45.0% | |
| CCAAAGCTGTCGACAATAGT+GGG | - | chr6.2:17410270-17410289 | MS.gene55530:intron | 45.0% | |
| CCACATAGTAGGAAAAGGCT+TGG | - | chr6.2:17410823-17410842 | MS.gene55530:intron | 45.0% | |
| CTACTGAGTTCCGGTTACAT+GGG | - | chr6.2:17413723-17413742 | MS.gene55530:CDS | 45.0% | |
| CTATGGCGTCGTTTGGTAAA+TGG | - | chr6.2:17414295-17414314 | MS.gene55530:intron | 45.0% | |
| CTGAAGCAACTAACTACGAC+AGG | - | chr6.2:17412271-17412290 | MS.gene55530:intron | 45.0% | |
| CTTACATAGGAGACACCAGA+AGG | + | chr6.2:17413374-17413393 | None:intergenic | 45.0% | |
| GCAAGTTCCTTGACAGGAAT+AGG | + | chr6.2:17413142-17413161 | None:intergenic | 45.0% | |
| GGGAGGGTAAGTCAATAAGT+AGG | - | chr6.2:17414183-17414202 | MS.gene55530:intron | 45.0% | |
| GTACGCTCCCTAAAACACAA+TGG | + | chr6.2:17414003-17414022 | None:intergenic | 45.0% | |
| GTCACTACTTTCTCTCCTGA+TGG | - | chr6.2:17410221-17410240 | MS.gene55530:intron | 45.0% | |
| GTTAAGTTCTGTGAGCACCT+GGG | - | chr6.2:17412003-17412022 | MS.gene55530:intron | 45.0% | |
| TACTGAGTTCCGGTTACATG+GGG | - | chr6.2:17413724-17413743 | MS.gene55530:CDS | 45.0% | |
| TGCACCTCTGCACATTATAC+TGG | - | chr6.2:17413182-17413201 | MS.gene55530:intron | 45.0% | |
| TGGAAGGCAAATTGTCGCTA+GGG | - | chr6.2:17412242-17412261 | MS.gene55530:intron | 45.0% | |
| TTAAGTTCTGTGAGCACCTG+GGG | - | chr6.2:17412004-17412023 | MS.gene55530:intron | 45.0% | |
| TTCAATTACTCCTTGTCGGC+AGG | + | chr6.2:17414601-17414620 | None:intergenic | 45.0% | |
| TTTGAAAACGATTCACGGCC+GGG | - | chr6.2:17411900-17411919 | MS.gene55530:intron | 45.0% | |
| ! | AACATGGACTGTACCAGAGA+AGG | + | chr6.2:17413878-17413897 | None:intergenic | 45.0% |
| ! | ACATGGACTGTACCAGAGAA+GGG | + | chr6.2:17413877-17413896 | None:intergenic | 45.0% |
| ! | CCAAGCCTTTTCCTACTATG+TGG | + | chr6.2:17410826-17410845 | None:intergenic | 45.0% |
| ! | GCTGCTGCCATTGTGTTTTA+GGG | - | chr6.2:17413993-17414012 | MS.gene55530:intron | 45.0% |
| ! | GTAGGAAAAGGCTTGGTTGT+TGG | - | chr6.2:17410830-17410849 | MS.gene55530:intron | 45.0% |
| ! | GTAGGTTGAGGCATGAACAA+AGG | + | chr6.2:17413913-17413932 | None:intergenic | 45.0% |
| ! | TGAACCTTTTCTCACTGGGT+AGG | + | chr6.2:17414335-17414354 | None:intergenic | 45.0% |
| ! | TGTAGCCGATTCCACATAGT+AGG | - | chr6.2:17410812-17410831 | MS.gene55530:intron | 45.0% |
| !!! | CCCGAAAGCATCATTTTCGA+AGG | + | chr6.2:17411443-17411462 | None:intergenic | 45.0% |
| !!! | GGTATTTTGGTGCTGCAATC+GGG | - | chr6.2:17413519-17413538 | MS.gene55530:intron | 45.0% |
| !!! | TAATGGTGCTGCAGACCTTT+TGG | - | chr6.2:17413290-17413309 | MS.gene55530:intron | 45.0% |
| !! | ATTTAAAAAATATGAAATAA+AGG | - | chr6.2:17412619-17412638 | MS.gene55530:intron | 5.0% |
| !!! | ATTTTTTTAGATATTAATAA+TGG | - | chr6.2:17410483-17410502 | MS.gene55530:intron | 5.0% |
| !!! | TTCATATTTTTTAAATAATA+AGG | + | chr6.2:17412615-17412634 | None:intergenic | 5.0% |
| !!! | TTTTTTTAGATATTAATAAT+GGG | - | chr6.2:17410484-17410503 | MS.gene55530:intron | 5.0% |
| AACGGAGATCCCCATGTAAC+CGG | + | chr6.2:17413736-17413755 | None:intergenic | 50.0% | |
| ACAGGCTGCGAAAACGTAAG+TGG | - | chr6.2:17413550-17413569 | MS.gene55530:intron | 50.0% | |
| AGGGGGTTTGGACATGTAGA+GGG | - | chr6.2:17410616-17410635 | MS.gene55530:CDS | 50.0% | |
| ATCTGGAAAACGCGACCATC+AGG | + | chr6.2:17410239-17410258 | None:intergenic | 50.0% | |
| CAAAGCGCACAAGTAGGTTG+AGG | + | chr6.2:17413925-17413944 | None:intergenic | 50.0% | |
| CAAGGAACTATGGCGTCGTT+TGG | - | chr6.2:17414288-17414307 | MS.gene55530:intron | 50.0% | |
| CATTCCAGAGTGGCGATGAA+CGG | + | chr6.2:17411486-17411505 | None:intergenic | 50.0% | |
| CCCACTATTGTCGACAGCTT+TGG | + | chr6.2:17410273-17410292 | None:intergenic | 50.0% | |
| CGATCAGCAAGTTCCTTGAC+AGG | + | chr6.2:17413148-17413167 | None:intergenic | 50.0% | |
| CGGTGATCCTATTCCTGTCA+AGG | - | chr6.2:17413132-17413151 | MS.gene55530:intron | 50.0% | |
| CTAGGTGGTTACGACAGAGA+TGG | - | chr6.2:17413326-17413345 | MS.gene55530:intron | 50.0% | |
| CTTTGGCAGCGTATTCGATC+TGG | + | chr6.2:17410256-17410275 | None:intergenic | 50.0% | |
| GACGCCATAGTTCCTTGTCA+TGG | + | chr6.2:17414285-17414304 | None:intergenic | 50.0% | |
| GCACATTATACTGGTGGCTC+AGG | - | chr6.2:17413191-17413210 | MS.gene55530:intron | 50.0% | |
| GCCAAAGCTGTCGACAATAG+TGG | - | chr6.2:17410269-17410288 | MS.gene55530:intron | 50.0% | |
| GCCACCAGTATAATGTGCAG+AGG | + | chr6.2:17413189-17413208 | None:intergenic | 50.0% | |
| GGCTCGACCATGTACAATTG+TGG | + | chr6.2:17413353-17413372 | None:intergenic | 50.0% | |
| GGTTGAGGCATGAACAAAGG+GGG | + | chr6.2:17413910-17413929 | None:intergenic | 50.0% | |
| GTCTTGCGAAGCGTACACAT+AGG | - | chr6.2:17411695-17411714 | MS.gene55530:intron | 50.0% | |
| GTTGAGGCATGAACAAAGGG+GGG | + | chr6.2:17413909-17413928 | None:intergenic | 50.0% | |
| GTTGTTCAAGAGTGGCCAGA+AGG | + | chr6.2:17412593-17412612 | None:intergenic | 50.0% | |
| TAATCGTGTGCAGGTTCCAG+AGG | - | chr6.2:17415108-17415127 | MS.gene55530:CDS | 50.0% | |
| TAGGGGGTTTGGACATGTAG+AGG | - | chr6.2:17410615-17410634 | MS.gene55530:CDS | 50.0% | |
| TATGTTCCTCAGCCCTTCTC+TGG | - | chr6.2:17413862-17413881 | MS.gene55530:intron | 50.0% | |
| TGGAGTTCATGACGAGGCAA+AGG | - | chr6.2:17414735-17414754 | MS.gene55530:intron | 50.0% | |
| TTGTACATGGTCGAGCCTTC+TGG | - | chr6.2:17413356-17413375 | MS.gene55530:intron | 50.0% | |
| ! | AGATGCAAGTTGGGTCGGAT+CGG | + | chr6.2:17410047-17410066 | None:intergenic | 50.0% |
| ! | GCTTCTTCTAGAAGCTCCTC+TGG | + | chr6.2:17415127-17415146 | None:intergenic | 50.0% |
| ! | GGCTGCTGCCATTGTGTTTT+AGG | - | chr6.2:17413992-17414011 | MS.gene55530:intron | 50.0% |
| ! | TGCTGCAGACCTTTTGGATG+TGG | - | chr6.2:17413296-17413315 | MS.gene55530:intron | 50.0% |
| !! | AGCTGTCGACAATAGTGGGT+AGG | - | chr6.2:17410274-17410293 | MS.gene55530:intron | 50.0% |
| !! | CAAGGAACTTGCTGATCGTG+TGG | - | chr6.2:17413150-17413169 | MS.gene55530:intron | 50.0% |
| !! | CAGGATTAGCTGCAGATGGA+AGG | - | chr6.2:17412226-17412245 | MS.gene55530:intron | 50.0% |
| !! | GCTGTCGACAATAGTGGGTA+GGG | - | chr6.2:17410275-17410294 | MS.gene55530:intron | 50.0% |
| !! | GGATGTGGTGTCATACTAGG+TGG | - | chr6.2:17413311-17413330 | MS.gene55530:intron | 50.0% |
| !! | GTAGCAGGATTAGCTGCAGA+TGG | - | chr6.2:17412222-17412241 | MS.gene55530:intron | 50.0% |
| !! | TTTGGTGCTGCAATCGGGAA+GGG | - | chr6.2:17413524-17413543 | MS.gene55530:intron | 50.0% |
| !!! | TTTTGGTGCTGCAATCGGGA+AGG | - | chr6.2:17413523-17413542 | MS.gene55530:intron | 50.0% |
| AAGTTGGGTCGGATCGGGTT+TGG | + | chr6.2:17410041-17410060 | None:intergenic | 55.0% | |
| ACTGTACCAGAGAAGGGCTG+AGG | + | chr6.2:17413871-17413890 | None:intergenic | 55.0% | |
| ! | CGTTCATCGCCACTCTGGAA+TGG | - | chr6.2:17411484-17411503 | MS.gene55530:intron | 55.0% |
| ! | GATGCAAGTTGGGTCGGATC+GGG | + | chr6.2:17410046-17410065 | None:intergenic | 55.0% |
| GCGGATATGACCTGCCGACA+AGG | - | chr6.2:17414588-17414607 | MS.gene55530:intron | 60.0% | |
| GCTGCTTAGTGCATTGCCCC+AGG | + | chr6.2:17412023-17412042 | None:intergenic | 60.0% | |
| TGCAATCGGGAAGGGCAGAC+AGG | - | chr6.2:17413532-17413551 | MS.gene55530:intron | 60.0% | |
| CACGCCGTTCATCGCCACTC+TGG | - | chr6.2:17411479-17411498 | MS.gene55530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 17410029 | 17415192 | 17410029 | ID=MS.gene55530 |
| chr6.2 | mRNA | 17410029 | 17415192 | 17410029 | ID=MS.gene55530.t1;Parent=MS.gene55530 |
| chr6.2 | exon | 17414930 | 17415192 | 17414930 | ID=MS.gene55530.t1.exon1;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17414930 | 17415192 | 17414930 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17413896 | 17413935 | 17413896 | ID=MS.gene55530.t1.exon2;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17413896 | 17413935 | 17413896 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17413716 | 17413799 | 17413716 | ID=MS.gene55530.t1.exon3;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17413716 | 17413799 | 17413716 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17412929 | 17413002 | 17412929 | ID=MS.gene55530.t1.exon4;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17412929 | 17413002 | 17412929 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17412009 | 17412095 | 17412009 | ID=MS.gene55530.t1.exon5;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17412009 | 17412095 | 17412009 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17411833 | 17411917 | 17411833 | ID=MS.gene55530.t1.exon6;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17411833 | 17411917 | 17411833 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17411657 | 17411703 | 17411657 | ID=MS.gene55530.t1.exon7;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17411657 | 17411703 | 17411657 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17410590 | 17410655 | 17410590 | ID=MS.gene55530.t1.exon8;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17410590 | 17410655 | 17410590 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17410402 | 17410492 | 17410402 | ID=MS.gene55530.t1.exon9;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17410402 | 17410492 | 17410402 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| chr6.2 | exon | 17410029 | 17410100 | 17410029 | ID=MS.gene55530.t1.exon10;Parent=MS.gene55530.t1 |
| chr6.2 | CDS | 17410029 | 17410100 | 17410029 | ID=cds.MS.gene55530.t1;Parent=MS.gene55530.t1 |
| Gene Sequence |
| Protein sequence |
