Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31094.t1 | XP_003597434.2 | 100 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 5.30E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31094.t1 | O82531 | 91.0 | 223 | 20 | 0 | 1 | 223 | 1 | 223 | 4.5e-115 | 415.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31094.t1 | G7IUC0 | 100.0 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 3.8e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049669 | MS.gene31094 | -0.807889 | 4.05E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene31094 | -0.810399 | 1.17E-50 | -1.69E-46 |
| MS.gene051935 | MS.gene31094 | -0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene052056 | MS.gene31094 | 0.886269 | 3.96E-72 | -1.69E-46 |
| MS.gene052333 | MS.gene31094 | -0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene052358 | MS.gene31094 | 0.82805 | 1.11E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene31094 | -0.800988 | 1.11E-48 | -1.69E-46 |
| MS.gene052673 | MS.gene31094 | 0.808925 | 2.44E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene31094 | -0.80442 | 2.18E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene31094 | -0.805967 | 1.03E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene31094 | 0.821459 | 3.99E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene31094 | -0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene31094 | -0.803592 | 3.24E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene31094 | -0.819289 | 1.26E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene31094 | -0.803579 | 3.26E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene31094 | -0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene057200 | MS.gene31094 | -0.802423 | 5.65E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene31094 | -0.80066 | 1.30E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene31094 | -0.808418 | 3.13E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene31094 | -0.817203 | 3.72E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene31094 | -0.810607 | 1.06E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene31094 | 0.824959 | 6.08E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene31094 | -0.807944 | 3.95E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene31094 | 0.842611 | 2.33E-58 | -1.69E-46 |
| MS.gene060683 | MS.gene31094 | -0.840816 | 6.92E-58 | -1.69E-46 |
| MS.gene060685 | MS.gene31094 | -0.844068 | 9.50E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene31094 | -0.803761 | 2.99E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene31094 | 0.837441 | 5.19E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31094.t1 | MTR_2g098010 | 100.000 | 223 | 0 | 0 | 1 | 223 | 1 | 223 | 1.19e-170 | 468 |
| MS.gene31094.t1 | MTR_5g079740 | 98.655 | 223 | 3 | 0 | 1 | 223 | 1 | 223 | 1.96e-168 | 462 |
| MS.gene31094.t1 | MTR_5g079740 | 98.193 | 166 | 3 | 0 | 58 | 223 | 1 | 166 | 5.57e-121 | 340 |
| MS.gene31094.t1 | MTR_7g088490 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 5.54e-18 | 79.3 |
| MS.gene31094.t1 | MTR_4g087680 | 32.283 | 127 | 86 | 0 | 11 | 137 | 4 | 130 | 9.44e-17 | 75.9 |
| MS.gene31094.t1 | MTR_3g109210 | 27.273 | 209 | 126 | 4 | 15 | 217 | 13 | 201 | 1.43e-15 | 73.2 |
| MS.gene31094.t1 | MTR_4g023520 | 94.118 | 34 | 2 | 0 | 58 | 91 | 1 | 34 | 5.91e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31094.t1 | AT3G60820 | 87.444 | 223 | 28 | 0 | 1 | 223 | 1 | 223 | 2.77e-150 | 417 |
| MS.gene31094.t1 | AT3G60820 | 87.444 | 223 | 28 | 0 | 1 | 223 | 1 | 223 | 2.77e-150 | 417 |
| MS.gene31094.t1 | AT3G60820 | 86.547 | 223 | 30 | 0 | 1 | 223 | 1 | 223 | 2.62e-148 | 412 |
| MS.gene31094.t1 | AT1G21720 | 32.558 | 129 | 87 | 0 | 9 | 137 | 2 | 130 | 2.33e-18 | 80.5 |
| MS.gene31094.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.70e-17 | 78.2 |
| MS.gene31094.t1 | AT1G77440 | 31.783 | 129 | 88 | 0 | 9 | 137 | 2 | 130 | 1.70e-17 | 78.2 |
| MS.gene31094.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 6.04e-13 | 66.2 |
| MS.gene31094.t1 | AT4G31300 | 26.794 | 209 | 127 | 4 | 15 | 217 | 12 | 200 | 6.04e-13 | 66.2 |
| MS.gene31094.t1 | AT4G31300 | 24.878 | 205 | 137 | 3 | 15 | 217 | 12 | 201 | 5.88e-12 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTACAAGTGAGAGATTT+TGG | 0.149319 | 2.4:-5973110 | None:intergenic |
| GGATATAGCTCTCAGGGTTC+TGG | 0.295385 | 2.4:+5975816 | MS.gene31094:CDS |
| TGACTAAACAACACGCTAAT+TGG | 0.296923 | 2.4:+5972874 | MS.gene31094:CDS |
| AAATGTGTGATGGCTTCTTC+TGG | 0.302083 | 2.4:+5974114 | MS.gene31094:CDS |
| TACTATTCTTTCAATGTGTT+GGG | 0.329503 | 2.4:+5975643 | MS.gene31094:CDS |
| GATGAATACCACCAGCATTT+AGG | 0.333947 | 2.4:-5976392 | None:intergenic |
| TTACTATTCTTTCAATGTGT+TGG | 0.338506 | 2.4:+5975642 | MS.gene31094:CDS |
| TACCCTCCATTGTTGTCATA+TGG | 0.350595 | 2.4:-5972900 | None:intergenic |
| AGATCTTGTGTCGCAATTGC+TGG | 0.365009 | 2.4:+5973016 | MS.gene31094:intron |
| GGCAGGTAAGAGGAGTGGGC+TGG | 0.368090 | 2.4:-5975883 | None:intergenic |
| CAGGTAAGAGGAGTGGGCTG+GGG | 0.380698 | 2.4:-5975881 | None:intergenic |
| GCAGGTAAGAGGAGTGGGCT+GGG | 0.386622 | 2.4:-5975882 | None:intergenic |
| AGGTAAGAGGAGTGGGCTGG+GGG | 0.399364 | 2.4:-5975880 | None:intergenic |
| GAAAGCAATTGAGCCATTGC+AGG | 0.407579 | 2.4:-5975589 | None:intergenic |
| ACTTCACCTGGGCAGGTAAG+AGG | 0.436789 | 2.4:-5975893 | None:intergenic |
| GCTATATCCCACCCTCTCAT+AGG | 0.437293 | 2.4:-5975802 | None:intergenic |
| CCCACTCCTCTTACCTGCCC+AGG | 0.466732 | 2.4:+5975887 | MS.gene31094:CDS |
| TTGTGTCGCAATTGCTGGAT+CGG | 0.468844 | 2.4:+5973021 | MS.gene31094:CDS |
| TTCAAGAACTTCACCTGGGC+AGG | 0.478299 | 2.4:-5975900 | None:intergenic |
| AAAAGCATCAGTCTTTCCTT+AGG | 0.478944 | 2.4:-5976428 | None:intergenic |
| TTCAGTTGGTTATCAAGAAA+CGG | 0.480345 | 2.4:-5975855 | None:intergenic |
| TGAAGCAGAAGCAGTTGATC+TGG | 0.483304 | 2.4:+5976023 | MS.gene31094:CDS |
| TGGTATTCATCGTGAGTTCA+TGG | 0.483816 | 2.4:+5976404 | MS.gene31094:CDS |
| GTCTTCACTTATGATGCTGT+TGG | 0.484095 | 2.4:+5975777 | MS.gene31094:CDS |
| GAGGGTGGGATATAGCTCTC+AGG | 0.498734 | 2.4:+5975809 | MS.gene31094:CDS |
| ACGAGTGAGGATGTTGTAAC+CGG | 0.515362 | 2.4:-5973080 | None:intergenic |
| GCAGATGAGCTGCCCTGCAA+TGG | 0.526195 | 2.4:+5975576 | MS.gene31094:CDS |
| AACACATTGAAAGAATAGTA+AGG | 0.535290 | 2.4:-5975640 | None:intergenic |
| CCTGGGCAGGTAAGAGGAGT+GGG | 0.542041 | 2.4:-5975887 | None:intergenic |
| TGCTTCAGACAGTGGAGTAA+CGG | 0.553618 | 2.4:-5976007 | None:intergenic |
| ATCGTGAGTTCATGGACCTA+AGG | 0.553653 | 2.4:+5976412 | MS.gene31094:CDS |
| ATGCTGTTGGTTCCTATGAG+AGG | 0.566800 | 2.4:+5975790 | MS.gene31094:CDS |
| TGATGTGAAGGCTTTGCAGA+AGG | 0.566876 | 2.4:+5974146 | MS.gene31094:CDS |
| ACCTGGGCAGGTAAGAGGAG+TGG | 0.577674 | 2.4:-5975888 | None:intergenic |
| ATTAGCGTGTTGTTTAGTCA+TGG | 0.578211 | 2.4:-5972871 | None:intergenic |
| CTCCATATGACAACAATGGA+GGG | 0.584655 | 2.4:+5972898 | MS.gene31094:CDS |
| GTGTGATCGCAGCTGATACA+AGG | 0.586277 | 2.4:+5973050 | MS.gene31094:CDS |
| TATTCTTTCAATGTGTTGGG+CGG | 0.587319 | 2.4:+5975646 | MS.gene31094:CDS |
| GAAATTGTCATCCTAAATGC+TGG | 0.591622 | 2.4:+5976381 | MS.gene31094:CDS |
| ACTGCTTCTGCTTCAGACAG+TGG | 0.591728 | 2.4:-5976015 | None:intergenic |
| AGGGTGGGATATAGCTCTCA+GGG | 0.602013 | 2.4:+5975810 | MS.gene31094:CDS |
| AAAGCAATTGAGCCATTGCA+GGG | 0.602125 | 2.4:-5975588 | None:intergenic |
| TGTTGGTTCCTATGAGAGGG+TGG | 0.605372 | 2.4:+5975794 | MS.gene31094:CDS |
| AAGAAACGGCATAATGAGAG+TGG | 0.608965 | 2.4:-5975841 | None:intergenic |
| ATAGCTCACCTTCACTGTCA+AGG | 0.612785 | 2.4:-5975669 | None:intergenic |
| TGCTGTTGGTTCCTATGAGA+GGG | 0.619026 | 2.4:+5975791 | MS.gene31094:CDS |
| TCTCCATATGACAACAATGG+AGG | 0.635572 | 2.4:+5972897 | MS.gene31094:CDS |
| AGTGAGGATGTTGTAACCGG+TGG | 0.639435 | 2.4:-5973077 | None:intergenic |
| GTTGGTTCCTATGAGAGGGT+GGG | 0.639673 | 2.4:+5975795 | MS.gene31094:CDS |
| TGGTCTCCATATGACAACAA+TGG | 0.646174 | 2.4:+5972894 | MS.gene31094:CDS |
| GCTGATACAAGGATGTCCAC+CGG | 0.646826 | 2.4:+5973061 | MS.gene31094:CDS |
| TTGGGCGGCCTTGACAGTGA+AGG | 0.657648 | 2.4:+5975661 | MS.gene31094:CDS |
| CAGAGCTGAGAAATGTGTGA+TGG | 0.663843 | 2.4:+5974104 | MS.gene31094:intron |
| ATTGTCATCCTAAATGCTGG+TGG | 0.706189 | 2.4:+5976384 | MS.gene31094:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr2.4:5973427-5973446 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAAA+GGG | - | chr2.4:5973427-5973446 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr2.4:5973155-5973174 | MS.gene31094:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr2.4:5973174-5973155 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr2.4:5973156-5973175 | MS.gene31094:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2.4:5973175-5973156 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+GGG | - | chr2.4:5973425-5973444 | None:intergenic | 10.0% |
| !! | AATTGAAAAATATTAAAACA+AGG | - | chr2.4:5972964-5972983 | None:intergenic | 10.0% |
| !! | ATTGAAAAATATTAAAACAA+GGG | - | chr2.4:5972963-5972982 | None:intergenic | 10.0% |
| !! | AGAATTAATTAATCGATAAA+AGG | - | chr2.4:5973580-5973599 | None:intergenic | 15.0% |
| !! | ATTAAAATATGATTTATTGC+AGG | + | chr2.4:5975981-5976000 | MS.gene31094:intron | 15.0% |
| !! | TATGCAAAACAAATAAAATT+AGG | - | chr2.4:5975191-5975210 | None:intergenic | 15.0% |
| !! | TTATTTATTTATCTGTTACA+AGG | - | chr2.4:5974212-5974231 | None:intergenic | 15.0% |
| !! | TTGAAAAATATTAAAACAAG+GGG | - | chr2.4:5972962-5972981 | None:intergenic | 15.0% |
| !!! | ATATATATATTAAGTTGTGT+TGG | - | chr2.4:5973145-5973164 | None:intergenic | 15.0% |
| !!! | TAAATCATATTTTAATGTAG+AGG | - | chr2.4:5975977-5975996 | None:intergenic | 15.0% |
| !!! | TAACTTTTATATAGAAAAGA+TGG | - | chr2.4:5975134-5975153 | None:intergenic | 15.0% |
| !!! | TTAGATGTTAATTTGAAATT+TGG | + | chr2.4:5975408-5975427 | MS.gene31094:intron | 15.0% |
| !!! | TTATCATTTCTTTACAATTT+TGG | - | chr2.4:5975277-5975296 | None:intergenic | 15.0% |
| !! | AAAAATAGTCCAATAAGTAT+AGG | - | chr2.4:5975054-5975073 | None:intergenic | 20.0% |
| !! | AAAATAAATATAGAGGTGAA+TGG | - | chr2.4:5974994-5975013 | None:intergenic | 20.0% |
| !! | AAACGTAAAACCTAATTATT+TGG | - | chr2.4:5973396-5973415 | None:intergenic | 20.0% |
| !! | AAGGAAATAATTAAATCTGA+TGG | + | chr2.4:5973781-5973800 | MS.gene31094:intron | 20.0% |
| !! | AATCTAATCTGGTAATTAAT+TGG | + | chr2.4:5973671-5973690 | MS.gene31094:intron | 20.0% |
| !! | ACAATAATAGAAAACCAATT+GGG | - | chr2.4:5973955-5973974 | None:intergenic | 20.0% |
| !! | ATAAACACAACTAAAAAAAG+AGG | - | chr2.4:5974026-5974045 | None:intergenic | 20.0% |
| !! | ATAGAGTATGTGTATAAATT+AGG | + | chr2.4:5974761-5974780 | MS.gene31094:intron | 20.0% |
| !! | ATTATTGTAAAACTTCTAGT+GGG | + | chr2.4:5973967-5973986 | MS.gene31094:intron | 20.0% |
| !! | CAAAATGACAATTATGTAAA+AGG | - | chr2.4:5976304-5976323 | None:intergenic | 20.0% |
| !! | GAACATCAAAATAAATATAG+AGG | - | chr2.4:5975001-5975020 | None:intergenic | 20.0% |
| !! | TACAATAATAGAAAACCAAT+TGG | - | chr2.4:5973956-5973975 | None:intergenic | 20.0% |
| !! | TAGTTAGTTACATAGTTATT+TGG | + | chr2.4:5974731-5974750 | MS.gene31094:intron | 20.0% |
| !! | TATAGAAACATTAGAAAAGA+GGG | - | chr2.4:5975082-5975101 | None:intergenic | 20.0% |
| !! | TATTATTGTAAAACTTCTAG+TGG | + | chr2.4:5973966-5973985 | MS.gene31094:intron | 20.0% |
| !! | TGAAAAATATTAAAACAAGG+GGG | - | chr2.4:5972961-5972980 | None:intergenic | 20.0% |
| !! | TTAAGAAAATAAGAAAGACT+AGG | - | chr2.4:5974887-5974906 | None:intergenic | 20.0% |
| !! | TTATAGAAACATTAGAAAAG+AGG | - | chr2.4:5975083-5975102 | None:intergenic | 20.0% |
| !! | TTTAGATTGTAAACATATTC+AGG | + | chr2.4:5974237-5974256 | MS.gene31094:intron | 20.0% |
| !! | TTTGGATATACAATTATACT+TGG | - | chr2.4:5975259-5975278 | None:intergenic | 20.0% |
| !!! | ACAATTTTATGCATGATAAT+TGG | - | chr2.4:5973549-5973568 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTATGTATGAAAA+CGG | + | chr2.4:5976093-5976112 | MS.gene31094:intron | 20.0% |
| !!! | GATTTTGTATATCAATTACA+CGG | + | chr2.4:5973750-5973769 | MS.gene31094:intron | 20.0% |
| ! | AAAAAATTGAGCTACAATCT+TGG | - | chr2.4:5973723-5973742 | None:intergenic | 25.0% |
| ! | AAAAATATTAAAACAAGGGG+GGG | - | chr2.4:5972959-5972978 | None:intergenic | 25.0% |
| ! | AACACATTGAAAGAATAGTA+AGG | - | chr2.4:5975643-5975662 | None:intergenic | 25.0% |
| ! | AATATCGTAAAGTTTGTGAA+TGG | + | chr2.4:5974813-5974832 | MS.gene31094:intron | 25.0% |
| ! | AATTGGAACGATTATCAATT+TGG | - | chr2.4:5973532-5973551 | None:intergenic | 25.0% |
| ! | AGTATAAACTTCTATAAAGG+TGG | - | chr2.4:5975168-5975187 | None:intergenic | 25.0% |
| ! | AGTTATGTTAACAAATAGAG+AGG | - | chr2.4:5974433-5974452 | None:intergenic | 25.0% |
| ! | ATAAATTAGGAGAACACAAA+GGG | + | chr2.4:5974774-5974793 | MS.gene31094:intron | 25.0% |
| ! | ATAGAAACATTAGAAAAGAG+GGG | - | chr2.4:5975081-5975100 | None:intergenic | 25.0% |
| ! | ATCTAACAACGTAATTGATA+AGG | - | chr2.4:5975394-5975413 | None:intergenic | 25.0% |
| ! | ATTGTAAAGAAATGATAAGC+AGG | + | chr2.4:5975279-5975298 | MS.gene31094:intron | 25.0% |
| ! | GAAAAATATTAAAACAAGGG+GGG | - | chr2.4:5972960-5972979 | None:intergenic | 25.0% |
| ! | GTATAAACTTCTATAAAGGT+GGG | - | chr2.4:5975167-5975186 | None:intergenic | 25.0% |
| ! | TAAACACTAAAGTCAAAATG+TGG | - | chr2.4:5976176-5976195 | None:intergenic | 25.0% |
| ! | TAACAAATAGAGAGGTTAAA+AGG | - | chr2.4:5974425-5974444 | None:intergenic | 25.0% |
| ! | TACTATTCTTTCAATGTGTT+GGG | + | chr2.4:5975643-5975662 | MS.gene31094:CDS | 25.0% |
| ! | TATAAATTAGGAGAACACAA+AGG | + | chr2.4:5974773-5974792 | MS.gene31094:intron | 25.0% |
| ! | TCGTTTCTCATATAAGATAT+TGG | + | chr2.4:5973820-5973839 | MS.gene31094:intron | 25.0% |
| ! | TCGTTTCTCATATAAGATAT+TGG | - | chr2.4:5973839-5973820 | None:intergenic | 25.0% |
| ! | TTACTATTCTTTCAATGTGT+TGG | + | chr2.4:5975642-5975661 | MS.gene31094:CDS | 25.0% |
| ! | TTATTGTAAAACTTCTAGTG+GGG | + | chr2.4:5973968-5973987 | MS.gene31094:intron | 25.0% |
| !! | AGGAGTATAAACTTCTATAA+AGG | - | chr2.4:5975171-5975190 | None:intergenic | 25.0% |
| !! | CAATTACACAGTATGTTTTA+AGG | - | chr2.4:5973305-5973324 | None:intergenic | 25.0% |
| !! | GAAGCTTTAATTATTTGTCA+CGG | - | chr2.4:5975500-5975519 | None:intergenic | 25.0% |
| !! | TTTGAAATTTGGTGAAATTG+TGG | + | chr2.4:5975419-5975438 | MS.gene31094:intron | 25.0% |
| !!! | CATAATTGTCATTTTGCATT+AGG | + | chr2.4:5976308-5976327 | MS.gene31094:intron | 25.0% |
| !!! | GTGTTTTTCTTGAAGTATTT+TGG | + | chr2.4:5975926-5975945 | MS.gene31094:intron | 25.0% |
| !!! | GTTAAATGTTGCTTTGATTT+GGG | + | chr2.4:5974496-5974515 | MS.gene31094:intron | 25.0% |
| AAAATATTAAAACAAGGGGG+GGG | - | chr2.4:5972958-5972977 | None:intergenic | 30.0% | |
| AACAAATTGAGCTACAATCT+TGG | + | chr2.4:5973344-5973363 | MS.gene31094:intron | 30.0% | |
| AACCTAATTATTTGGAGAAG+AGG | - | chr2.4:5973388-5973407 | None:intergenic | 30.0% | |
| ACAAACAGAACAAAAACACA+AGG | - | chr2.4:5974310-5974329 | None:intergenic | 30.0% | |
| ACTTCAACCTAAAATAGGAA+AGG | + | chr2.4:5975749-5975768 | MS.gene31094:intron | 30.0% | |
| AGAGCAAGCAAATACAAAAA+TGG | - | chr2.4:5975722-5975741 | None:intergenic | 30.0% | |
| ATATATTGCTGAAACCCAAT+TGG | + | chr2.4:5973938-5973957 | MS.gene31094:intron | 30.0% | |
| ATTCTATATACCGAGAAAAG+AGG | - | chr2.4:5974625-5974644 | None:intergenic | 30.0% | |
| CACGGTAATATTCAAAACAA+TGG | - | chr2.4:5975482-5975501 | None:intergenic | 30.0% | |
| CTTCAACCTAAAATAGGAAA+GGG | + | chr2.4:5975750-5975769 | MS.gene31094:intron | 30.0% | |
| CTTCAACTTCAACCTAAAAT+AGG | + | chr2.4:5975744-5975763 | MS.gene31094:intron | 30.0% | |
| GAAACGAGAACTATCTATAT+CGG | + | chr2.4:5973242-5973261 | MS.gene31094:intron | 30.0% | |
| GAGCAAGCAAATACAAAAAT+GGG | - | chr2.4:5975721-5975740 | None:intergenic | 30.0% | |
| GTAAACATATTCAGGAAACA+GGG | + | chr2.4:5974245-5974264 | MS.gene31094:intron | 30.0% | |
| GTAACACATTATGTCATGAT+GGG | - | chr2.4:5974670-5974689 | None:intergenic | 30.0% | |
| GTCCAATAAGTATAGGTAAA+AGG | - | chr2.4:5975047-5975066 | None:intergenic | 30.0% | |
| TACATGACATGCATTATGTT+AGG | - | chr2.4:5974947-5974966 | None:intergenic | 30.0% | |
| TATTCAAAACAATGGAAGCA+TGG | - | chr2.4:5975474-5975493 | None:intergenic | 30.0% | |
| TGTAAACATATTCAGGAAAC+AGG | + | chr2.4:5974244-5974263 | MS.gene31094:intron | 30.0% | |
| TTCAGTTGGTTATCAAGAAA+CGG | - | chr2.4:5975858-5975877 | None:intergenic | 30.0% | |
| TTCCTCTTCTCCAAATAATT+AGG | + | chr2.4:5973383-5973402 | MS.gene31094:intron | 30.0% | |
| ! | AAAGGTTTGAGATTTGGAAA+TGG | + | chr2.4:5973623-5973642 | MS.gene31094:intron | 30.0% |
| ! | AAGTCTAAACTAGGTTTTTG+GGG | + | chr2.4:5974062-5974081 | MS.gene31094:intron | 30.0% |
| ! | AGAAAGCGTAAAATCTAATC+TGG | + | chr2.4:5973660-5973679 | MS.gene31094:intron | 30.0% |
| ! | ATATATATAGGGAGCATATC+CGG | + | chr2.4:5973197-5973216 | MS.gene31094:intron | 30.0% |
| ! | ATGTCATGTATTGAGTTGTA+AGG | + | chr2.4:5974957-5974976 | MS.gene31094:intron | 30.0% |
| ! | CAAGATTGAGAAATTTCTAG+CGG | - | chr2.4:5973499-5973518 | None:intergenic | 30.0% |
| ! | CAAGTCTAAACTAGGTTTTT+GGG | + | chr2.4:5974061-5974080 | MS.gene31094:intron | 30.0% |
| ! | CAATTACACGGTATGTTTTA+AGG | + | chr2.4:5973762-5973781 | MS.gene31094:intron | 30.0% |
| ! | CTCCTTTTACCTATACTTAT+TGG | + | chr2.4:5975042-5975061 | MS.gene31094:intron | 30.0% |
| ! | TCACTATGTTGATTACTTGT+TGG | + | chr2.4:5974335-5974354 | MS.gene31094:intron | 30.0% |
| ! | TTGATTACTTGTTGGAAAGT+TGG | + | chr2.4:5974343-5974362 | MS.gene31094:intron | 30.0% |
| !! | ACAAGCTTTAAACTTGCTTT+GGG | + | chr2.4:5976331-5976350 | MS.gene31094:intron | 30.0% |
| !! | GGTTAAATGTTGCTTTGATT+TGG | + | chr2.4:5974495-5974514 | MS.gene31094:intron | 30.0% |
| !! | TATAAGATATTGGTTCTCAC+CGG | - | chr2.4:5973219-5973238 | None:intergenic | 30.0% |
| !! | TTCTGCACTAGTATTTTTGT+TGG | + | chr2.4:5975018-5975037 | MS.gene31094:intron | 30.0% |
| !! | TTTGGGTGTATGTTTTTACA+GGG | + | chr2.4:5976348-5976367 | MS.gene31094:intron | 30.0% |
| !!! | GTATTTTGACTTTGCAAAAC+AGG | - | chr2.4:5976202-5976221 | None:intergenic | 30.0% |
| AAAGATGCCAAGTCTAAACT+AGG | + | chr2.4:5974053-5974072 | MS.gene31094:intron | 35.0% | |
| AAAGCAACATTTAACCCTAG+AGG | - | chr2.4:5974491-5974510 | None:intergenic | 35.0% | |
| AAATGATAAGCAGGATTGAG+GGG | + | chr2.4:5975288-5975307 | MS.gene31094:intron | 35.0% | |
| AAGATCGTGGACATGTTTAA+AGG | - | chr2.4:5975109-5975128 | None:intergenic | 35.0% | |
| AGAAATGATAAGCAGGATTG+AGG | + | chr2.4:5975286-5975305 | MS.gene31094:intron | 35.0% | |
| ATTGAGGGGAAAGTAAAAAC+TGG | + | chr2.4:5975302-5975321 | MS.gene31094:intron | 35.0% | |
| ATTTCGACTGCAGAAAATTG+TGG | + | chr2.4:5976277-5976296 | MS.gene31094:intron | 35.0% | |
| CACATTCATACTTGCAGAAT+TGG | + | chr2.4:5976130-5976149 | MS.gene31094:intron | 35.0% | |
| CCAAAAACCTAGTTTAGACT+TGG | - | chr2.4:5974063-5974082 | None:intergenic | 35.0% | |
| CGTAACACATTATGTCATGA+TGG | - | chr2.4:5974671-5974690 | None:intergenic | 35.0% | |
| CTTTCTTGAAAGAGAGCAAA+AGG | - | chr2.4:5973466-5973485 | None:intergenic | 35.0% | |
| GAAATGATAAGCAGGATTGA+GGG | + | chr2.4:5975287-5975306 | MS.gene31094:intron | 35.0% | |
| GAAATTGTCATCCTAAATGC+TGG | + | chr2.4:5976381-5976400 | MS.gene31094:CDS | 35.0% | |
| GGTTTATTTATAGACTGCCA+TGG | + | chr2.4:5974589-5974608 | MS.gene31094:intron | 35.0% | |
| TATTCTTTCAATGTGTTGGG+CGG | + | chr2.4:5975646-5975665 | MS.gene31094:CDS | 35.0% | |
| TGACTAAACAACACGCTAAT+TGG | + | chr2.4:5972874-5972893 | MS.gene31094:CDS | 35.0% | |
| TTCTATTCCATTCAGCTCTT+GGG | + | chr2.4:5974919-5974938 | MS.gene31094:intron | 35.0% | |
| TTTCTATTCCATTCAGCTCT+TGG | + | chr2.4:5974918-5974937 | MS.gene31094:intron | 35.0% | |
| ! | ACACATCCCTTTCCTATTTT+AGG | - | chr2.4:5975759-5975778 | None:intergenic | 35.0% |
| ! | AGCTTACAAGTGAGAGATTT+TGG | - | chr2.4:5973113-5973132 | None:intergenic | 35.0% |
| ! | ATACCGAGAAAAGAGGTTTT+CGG | - | chr2.4:5974618-5974637 | None:intergenic | 35.0% |
| ! | CCAAGTCTAAACTAGGTTTT+TGG | + | chr2.4:5974060-5974079 | MS.gene31094:intron | 35.0% |
| ! | GAACGATTATCAATTTGGTG+AGG | - | chr2.4:5973527-5973546 | None:intergenic | 35.0% |
| ! | TAACCGAAAACCTCTTTTCT+CGG | + | chr2.4:5974612-5974631 | MS.gene31094:intron | 35.0% |
| ! | TGAGGAAAAGGTTTGAGATT+TGG | + | chr2.4:5973617-5973636 | MS.gene31094:intron | 35.0% |
| !! | AAACTGAGAGTATTCCTCTA+GGG | + | chr2.4:5974474-5974493 | MS.gene31094:intron | 35.0% |
| !! | CTTTGGGTGTATGTTTTTAC+AGG | + | chr2.4:5976347-5976366 | MS.gene31094:intron | 35.0% |
| !! | GACAAGCTTTAAACTTGCTT+TGG | + | chr2.4:5976330-5976349 | MS.gene31094:intron | 35.0% |
| !! | TAAACTGAGAGTATTCCTCT+AGG | + | chr2.4:5974473-5974492 | MS.gene31094:intron | 35.0% |
| !! | TACTTGCTGATTTGAGGAAA+AGG | + | chr2.4:5973605-5973624 | MS.gene31094:intron | 35.0% |
| !! | TAGTGTTACTTGCTGATTTG+AGG | + | chr2.4:5973599-5973618 | MS.gene31094:intron | 35.0% |
| !! | TATGTTTTTACAGGGGGATA+AGG | + | chr2.4:5976356-5976375 | MS.gene31094:intron | 35.0% |
| !! | TTGGGTGTATGTTTTTACAG+GGG | + | chr2.4:5976349-5976368 | MS.gene31094:intron | 35.0% |
| AAAGCAATTGAGCCATTGCA+GGG | - | chr2.4:5975591-5975610 | None:intergenic | 40.0% | |
| AAATGTGTGATGGCTTCTTC+TGG | + | chr2.4:5974114-5974133 | MS.gene31094:CDS | 40.0% | |
| AACATATTCAGGAAACAGGG+TGG | + | chr2.4:5974248-5974267 | MS.gene31094:intron | 40.0% | |
| AAGAAACGGCATAATGAGAG+TGG | - | chr2.4:5975844-5975863 | None:intergenic | 40.0% | |
| ACCAATTCAAGAACTTCACC+TGG | - | chr2.4:5975908-5975927 | None:intergenic | 40.0% | |
| AGAAAAGATGGCAAAGATCG+TGG | - | chr2.4:5975122-5975141 | None:intergenic | 40.0% | |
| AGTAGCAACTCTAATGCGAA+GGG | + | chr2.4:5974836-5974855 | MS.gene31094:intron | 40.0% | |
| ATTGTCATCCTAAATGCTGG+TGG | + | chr2.4:5976384-5976403 | MS.gene31094:CDS | 40.0% | |
| CCAATTCAAGAACTTCACCT+GGG | - | chr2.4:5975907-5975926 | None:intergenic | 40.0% | |
| CTCCATATGACAACAATGGA+GGG | + | chr2.4:5972898-5972917 | MS.gene31094:CDS | 40.0% | |
| CTGCAAGTATGAATGTGTGA+AGG | - | chr2.4:5976127-5976146 | None:intergenic | 40.0% | |
| GATGAATACCACCAGCATTT+AGG | - | chr2.4:5976395-5976414 | None:intergenic | 40.0% | |
| GTCTTCACTTATGATGCTGT+TGG | + | chr2.4:5975777-5975796 | MS.gene31094:CDS | 40.0% | |
| TACCCTCCATTGTTGTCATA+TGG | - | chr2.4:5972903-5972922 | None:intergenic | 40.0% | |
| TCTCCATATGACAACAATGG+AGG | + | chr2.4:5972897-5972916 | MS.gene31094:CDS | 40.0% | |
| TGGTATTCATCGTGAGTTCA+TGG | + | chr2.4:5976404-5976423 | MS.gene31094:CDS | 40.0% | |
| TGGTCTCCATATGACAACAA+TGG | + | chr2.4:5972894-5972913 | MS.gene31094:CDS | 40.0% | |
| TTCAACCGCCTGATCTTAAT+AGG | - | chr2.4:5976232-5976251 | None:intergenic | 40.0% | |
| ! | AAAGAGGTTTTCGGTTACCA+TGG | - | chr2.4:5974609-5974628 | None:intergenic | 40.0% |
| ! | AAGCAGTGTTGAGCATTTGA+TGG | + | chr2.4:5974568-5974587 | MS.gene31094:intron | 40.0% |
| ! | CAAAACAATGGAAGCATGGA+AGG | - | chr2.4:5975470-5975489 | None:intergenic | 40.0% |
| !! | TGGGTGTATGTTTTTACAGG+GGG | + | chr2.4:5976350-5976369 | MS.gene31094:intron | 40.0% |
| !! | TGGTTTTCAAGCTGATGTGA+AGG | + | chr2.4:5974134-5974153 | MS.gene31094:CDS | 40.0% |
| !!! | TTTTGGAGTAATCACGAGTG+AGG | - | chr2.4:5973096-5973115 | None:intergenic | 40.0% |
| AATCTCGTGACTGTGAATGC+AGG | + | chr2.4:5976251-5976270 | MS.gene31094:intron | 45.0% | |
| ACCGCCTGATCTTAATAGGA+CGG | - | chr2.4:5976228-5976247 | None:intergenic | 45.0% | |
| ACGAGTGAGGATGTTGTAAC+CGG | - | chr2.4:5973083-5973102 | None:intergenic | 45.0% | |
| AGATCTTGTGTCGCAATTGC+TGG | + | chr2.4:5973016-5973035 | MS.gene31094:intron | 45.0% | |
| ATAGCTCACCTTCACTGTCA+AGG | - | chr2.4:5975672-5975691 | None:intergenic | 45.0% | |
| ATCGTGAGTTCATGGACCTA+AGG | + | chr2.4:5976412-5976431 | MS.gene31094:CDS | 45.0% | |
| ATCTCGTGACTGTGAATGCA+GGG | + | chr2.4:5976252-5976271 | MS.gene31094:intron | 45.0% | |
| CAAGCCGTCCTATTAAGATC+AGG | + | chr2.4:5976221-5976240 | MS.gene31094:intron | 45.0% | |
| CAGAGCTGAGAAATGTGTGA+TGG | + | chr2.4:5974104-5974123 | MS.gene31094:intron | 45.0% | |
| CCCAGGTGAAGTTCTTGAAT+TGG | + | chr2.4:5975904-5975923 | MS.gene31094:intron | 45.0% | |
| GAAAGCAATTGAGCCATTGC+AGG | - | chr2.4:5975592-5975611 | None:intergenic | 45.0% | |
| GAGTAGCAACTCTAATGCGA+AGG | + | chr2.4:5974835-5974854 | MS.gene31094:intron | 45.0% | |
| GTAGCAACTCTAATGCGAAG+GGG | + | chr2.4:5974837-5974856 | MS.gene31094:intron | 45.0% | |
| TAATGCGAAGGGGAAACTCT+TGG | + | chr2.4:5974847-5974866 | MS.gene31094:intron | 45.0% | |
| TGAAGCAGAAGCAGTTGATC+TGG | + | chr2.4:5976023-5976042 | MS.gene31094:CDS | 45.0% | |
| TGATGTGAAGGCTTTGCAGA+AGG | + | chr2.4:5974146-5974165 | MS.gene31094:CDS | 45.0% | |
| TGCTTCAGACAGTGGAGTAA+CGG | - | chr2.4:5976010-5976029 | None:intergenic | 45.0% | |
| TTAGGAACCCAAGAGCTGAA+TGG | - | chr2.4:5974929-5974948 | None:intergenic | 45.0% | |
| TTGTGTCGCAATTGCTGGAT+CGG | + | chr2.4:5973021-5973040 | MS.gene31094:CDS | 45.0% | |
| !! | ATGCTGTTGGTTCCTATGAG+AGG | + | chr2.4:5975790-5975809 | MS.gene31094:CDS | 45.0% |
| !! | GGTTTTGTCTGCTAGGCATT+TGG | + | chr2.4:5974167-5974186 | MS.gene31094:CDS | 45.0% |
| !! | TGCAGAAGGTTTTGTCTGCT+AGG | + | chr2.4:5974160-5974179 | MS.gene31094:CDS | 45.0% |
| !! | TGCTGTTGGTTCCTATGAGA+GGG | + | chr2.4:5975791-5975810 | MS.gene31094:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+GGG | - | chr2.4:5973426-5973445 | None:intergenic | 5.0% |
| ACTGCTTCTGCTTCAGACAG+TGG | - | chr2.4:5976018-5976037 | None:intergenic | 50.0% | |
| AGGGTGGGATATAGCTCTCA+GGG | + | chr2.4:5975810-5975829 | MS.gene31094:CDS | 50.0% | |
| AGTGAGGATGTTGTAACCGG+TGG | - | chr2.4:5973080-5973099 | None:intergenic | 50.0% | |
| GCCGTCCTATTAAGATCAGG+CGG | + | chr2.4:5976224-5976243 | MS.gene31094:intron | 50.0% | |
| GCTATATCCCACCCTCTCAT+AGG | - | chr2.4:5975805-5975824 | None:intergenic | 50.0% | |
| GCTGATACAAGGATGTCCAC+CGG | + | chr2.4:5973061-5973080 | MS.gene31094:CDS | 50.0% | |
| GGATATAGCTCTCAGGGTTC+TGG | + | chr2.4:5975816-5975835 | MS.gene31094:CDS | 50.0% | |
| GTGTGATCGCAGCTGATACA+AGG | + | chr2.4:5973050-5973069 | MS.gene31094:CDS | 50.0% | |
| TTCAAGAACTTCACCTGGGC+AGG | - | chr2.4:5975903-5975922 | None:intergenic | 50.0% | |
| ! | GTTGGTTCCTATGAGAGGGT+GGG | + | chr2.4:5975795-5975814 | MS.gene31094:CDS | 50.0% |
| !! | TGTTGGTTCCTATGAGAGGG+TGG | + | chr2.4:5975794-5975813 | MS.gene31094:CDS | 50.0% |
| AAAACAAGGGGGGGGAGAGA+GGG | - | chr2.4:5972950-5972969 | None:intergenic | 55.0% | |
| ACTTCACCTGGGCAGGTAAG+AGG | - | chr2.4:5975896-5975915 | None:intergenic | 55.0% | |
| GAGGGTGGGATATAGCTCTC+AGG | + | chr2.4:5975809-5975828 | MS.gene31094:CDS | 55.0% | |
| TAAAACAAGGGGGGGGAGAG+AGG | - | chr2.4:5972951-5972970 | None:intergenic | 55.0% | |
| TGCGAAGGGGAAACTCTTGG+AGG | + | chr2.4:5974850-5974869 | MS.gene31094:intron | 55.0% | |
| ACCTGGGCAGGTAAGAGGAG+TGG | - | chr2.4:5975891-5975910 | None:intergenic | 60.0% | |
| CCTGGGCAGGTAAGAGGAGT+GGG | - | chr2.4:5975890-5975909 | None:intergenic | 60.0% | |
| GCAGATGAGCTGCCCTGCAA+TGG | + | chr2.4:5975576-5975595 | MS.gene31094:CDS | 60.0% | |
| TTGGGCGGCCTTGACAGTGA+AGG | + | chr2.4:5975661-5975680 | MS.gene31094:CDS | 60.0% | |
| ! | GCAGGTAAGAGGAGTGGGCT+GGG | - | chr2.4:5975885-5975904 | None:intergenic | 60.0% |
| !! | AGGTAAGAGGAGTGGGCTGG+GGG | - | chr2.4:5975883-5975902 | None:intergenic | 60.0% |
| !! | CAGGTAAGAGGAGTGGGCTG+GGG | - | chr2.4:5975884-5975903 | None:intergenic | 60.0% |
| CCCACTCCTCTTACCTGCCC+AGG | + | chr2.4:5975887-5975906 | MS.gene31094:CDS | 65.0% | |
| GGCAGGTAAGAGGAGTGGGC+TGG | - | chr2.4:5975886-5975905 | None:intergenic | 65.0% | |
| !! | GTGGGCTGGGGGACTTCAGT+TGG | - | chr2.4:5975872-5975891 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5972873 | 5976443 | 5972873 | ID=MS.gene31094 |
| chr2.4 | mRNA | 5972873 | 5976443 | 5972873 | ID=MS.gene31094.t1;Parent=MS.gene31094 |
| chr2.4 | exon | 5972873 | 5972919 | 5972873 | ID=MS.gene31094.t1.exon1;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5972873 | 5972919 | 5972873 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5973018 | 5973125 | 5973018 | ID=MS.gene31094.t1.exon2;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5973018 | 5973125 | 5973018 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5974107 | 5974188 | 5974107 | ID=MS.gene31094.t1.exon3;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5974107 | 5974188 | 5974107 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5975553 | 5975682 | 5975553 | ID=MS.gene31094.t1.exon4;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5975553 | 5975682 | 5975553 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5975766 | 5975908 | 5975766 | ID=MS.gene31094.t1.exon5;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5975766 | 5975908 | 5975766 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5976003 | 5976089 | 5976003 | ID=MS.gene31094.t1.exon6;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5976003 | 5976089 | 5976003 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| chr2.4 | exon | 5976369 | 5976443 | 5976369 | ID=MS.gene31094.t1.exon7;Parent=MS.gene31094.t1 |
| chr2.4 | CDS | 5976369 | 5976443 | 5976369 | ID=cds.MS.gene31094.t1;Parent=MS.gene31094.t1 |
| Gene Sequence |
| Protein sequence |
