AlfalfaGEDB | MS.gene90604

M. sativa cultivar XinJiangDaYe / MS.gene90604

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90604.t1	XP_003614255.2	93.5	542	31	3	1	541	1	539	6.70E-180	640.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90604.t1	G7JY54	93.5	542	31	3	1	541	1	539	4.8e-180	640.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene90604	0.805017	1.64E-49	-1.69E-46
MS.gene04918	MS.gene90604	0.825277	5.12E-54	-1.69E-46
MS.gene04919	MS.gene90604	0.802549	5.32E-49	-1.69E-46
MS.gene04920	MS.gene90604	0.821831	3.28E-53	-1.69E-46
MS.gene049254	MS.gene90604	0.822477	2.32E-53	-1.69E-46
MS.gene049283	MS.gene90604	0.873646	1.25E-67	-1.69E-46
MS.gene049368	MS.gene90604	0.808661	2.78E-50	-1.69E-46
MS.gene049419	MS.gene90604	-0.837817	4.16E-57	-1.69E-46
MS.gene049499	MS.gene90604	0.886827	2.44E-72	-1.69E-46
MS.gene049801	MS.gene90604	0.802358	5.83E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90604.t1	MTR_5g047140	95.018	542	23	3	1	541	1	539	0.0	970
MS.gene90604.t1	MTR_5g047140	94.714	454	21	2	1	454	1	451	0.0	801

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90604.t1	AT1G69060	58.333	120	50	0	422	541	463	582	2.04e-34	137

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Find 104 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGAACAGTGGGAAG+AGG	0.555343	5.1:-35056879	MS.gene90604:CDS
AAAAGCCATGGAAGAGGAAA+TGG	0.433668	5.1:-35056147	MS.gene90604:CDS
AAAATAGGTCTGAAAAGCAT+GGG	0.595327	5.1:-35056769	MS.gene90604:CDS
AAAATGGTCCTGTTTCGAAG+AGG	0.678343	5.1:-35057039	MS.gene90604:CDS
AAAGAAGAAGCTCAATCATT+TGG	0.361204	5.1:-35053968	MS.gene90604:CDS
AAATTTATGAGCTCCAACCA+AGG	0.645106	5.1:-35056428	MS.gene90604:CDS
AACTGTAATTTCTGTAACGA+TGG	0.503873	5.1:-35056623	MS.gene90604:CDS
AAGCTTCTGCTTCTAACGTG+CGG	0.646962	5.1:-35057003	MS.gene90604:CDS
AAGTCTTAGACCATCGCCAA+AGG	0.637737	5.1:-35053887	MS.gene90604:CDS
AATATCATCCTCACCAGTGA+AGG	0.573976	5.1:+35056700	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAAGCTCAATCATT+TGG	-	chr5.1:35057371-35057390	MS.gene90604:CDS	30.0%
AAAGGCTTCAAATTGAGTAA+TGG	-	chr5.1:35056274-35056293	MS.gene90604:CDS	30.0%
AAATTCAGGTGATTCACATA+TGG	-	chr5.1:35055236-35055255	MS.gene90604:intron	30.0%
AACTGTAATTTCTGTAACGA+TGG	-	chr5.1:35054716-35054735	MS.gene90604:intron	30.0%
AACTTAGTGGAACTCAATTT+GGG	+	chr5.1:35055792-35055811	None:intergenic	30.0%
AAGGCTTCAAATTGAGTAAT+GGG	-	chr5.1:35056275-35056294	MS.gene90604:CDS	30.0%
AATAACAAGAATGACATTGG+TGG	+	chr5.1:35056679-35056698	None:intergenic	30.0%
AATACAGAACTTACGCATAA+AGG	+	chr5.1:35056324-35056343	None:intergenic	30.0%
AATTCCATATACGATCAGAA+TGG	-	chr5.1:35056133-35056152	MS.gene90604:CDS	30.0%
AATTTCTGTAACGATGGTAT+TGG	-	chr5.1:35054722-35054741	MS.gene90604:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	35053885	35057476	35053885	ID=MS.gene90604
chr5.1	mRNA	35053885	35057476	35053885	ID=MS.gene90604.t1;Parent=MS.gene90604
chr5.1	exon	35056118	35057476	35056118	ID=MS.gene90604.t1.exon1;Parent=MS.gene90604.t1
chr5.1	CDS	35056118	35057476	35056118	ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1
chr5.1	exon	35054311	35054424	35054311	ID=MS.gene90604.t1.exon2;Parent=MS.gene90604.t1
chr5.1	CDS	35054311	35054424	35054311	ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1
chr5.1	exon	35053885	35054034	35053885	ID=MS.gene90604.t1.exon3;Parent=MS.gene90604.t1
chr5.1	CDS	35053885	35054034	35053885	ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1

Gene Sequence

>MS.gene90604

ATGCTTGGAAAAGGTGTTTCGAGAGAACATTTTCAGCCTCGAACATGTTCTTCGGGGAAGAATGCATCCAAAACTGGTCAGGCGAAAGGGGATTTAGAGAATATTGTTTTCATTGACTTAGATAATGATCAATATGATGATGTAGAAATCATAGGATCCAGTGGGCCAAGTAAAGATAGAACATCGACGCCTCAGAGTGTTATCAGCATTGATGACGACGACGACGACGACGACGATGACGATGATGATGATGATGACGACGATGATGGAAGTGATGATGTGGATCAGTCTGGAATTGATGTTGATGGTGTTGGAGAGTTGGATAGCGATGCCTCTTCAAACAAAAGGTTTTCTATGCCCTCAAGTTCCGCGTGGAAATCTGTATACGTAGATGTTGATGACTGTGATGTCTATGAAAATGGTCCTGTTTCGAAGAGGCAAAAAAGTAATAAAGCTTCTGCTTCTAACGTGCGGAAGAAAGTATTCTCTCCAAACGCTAAAGAAAGAAATCGTTATGGTTTATATGGGTCTGAAAGTGACTCATCTGATAGCGATTGTTCTGATTGTGAGGTCATAAAACGTGAACAGTGGGAAGAGGATACCGCAATGAAAAAGGGCCGTGTGTTTAATGAGCATGTCAGTTCTTCTGGTTTACATACAAATAATTACAATAACATAGAAGCGGAAAATAGGTCTGAAAAGCATGGGAAAGGTCCTTTATATGGTCCTAGTTGTAGTAAGGAGAATCAATCTTCCTTCACTGGTGAGGATGATATTCGGAATGGAGAAAGGACAACTAAGAAAAAGGTTAATCCCTGCCCCAAGTCAAAAAACTGTAATTTCTGTAACGATGGTATTGGTTCTTCAAAGTCCAGGAATGAACTGGGTGATGACGAGTCTACATTTAAGGATGATATTCAGCATGGAGAAAAAGTTTCTGCCTGCCCCAACTCTGAAAACTCTAATTTCTGTAACGGTGTTGCTGGTTCTTCAAGTTTGAAGCAAGGACTAGGTGATAAAGAGTCTAAATTTATGAGCTCCAACCAAGGTGCACATGACATGCAAGTTGACGATGATGAATCTCCATTGAATGCACATGACGGACAAGTTGACAATGATGAATCTCCATTGAGGAGTAAAGATGACAATATTTCTGAAGAGAATTCTAATGGTGCCTCTTTTGATGAAAGGCATATCAATGGTCATGATGAGCTTGCTTTACATACTCAAGATGCTGATCTTACCGCTTCAAATGAGAAAAATATAATTAATCAAAAAGAAAAGCATAAGCAAACTGATTTATACAAAAAAGCCATGGAAGAGGAAATGGCATCCAGACAGAGACAATTGCAAATTCAGGTGATTCACATATGGCATGCTGTAAATGTTTTCTTTACCTTTCTGTTATGCCTTTACATGTTTTGGCTCTTTAAACAGGAGTGTAGTTCTCTTACATGTTGAAGGGCTGCCTGCCTTGTAAATGCATGTGTATTTATTGTTTAGACTTATCTAGTTTACAACTGAAGCATTTATAGTTTTAGGACTTCGATGATATAATGTGAAACTATAGGAGTTTCAAATCAAGGCGGGTAAGCATTATGTCTATCTACTCCTGAGATCTACTATTGTTATTCATCTCCATGATTATTAAATGGATATGTGTGTGGGTGTAAGAGAATAAATATATTACCATGAAAAGAAAAATATGCTAAGAACAATATTTGTGAATGTGTTTCTTTTTTGCTAAGAAAATATATACTAAATGAGAGAACAAAACAGGAAAAAAAATCAAGAAAAAAGAGAACTTAAATGAAGTAGTGCTGCGAATACCCTCGTATCTATTGGAGAAACCTCATTGAAAATCTTATGAGCCTTTAGCAGATAGATGAAAAATTCCTATTGTTCCCAAATTGAGTTCCACTAAGTTAGATGCGTCAAAGTGTGACTTAAGTCAATGTGTTAGTAGACCTCCTATTACTAATGTATGTAAGTGCCTTGTAATTTAGGCCTAAATTTTATAAGTGTGATGTATAGAATAAGAACAAGAAAGCACCTCATTCGGTTTGTTGAGTGGTTTGGTTTGGGAGAGTAGGCTCTCCATATCCTAGAGGTTTGTTAGTTTCCTGCAGTTACCATCTGCAGTTTGTGTCAGTTTACATTCCCCTATTTTCTGTAACTACCTCTGTTGGAAAGTTTCCACAGAGAAGATCAATAATATCAGTGCATCTTCAGTTTGTATATTTCATCTAATTCCATATACGATCAGAATGGTTTAGGCCAATGTTATACATCTGGATATTAATGGACGAAGGTGCTGGAGATGTTTTGGACATCAGAAGCTAATAATGCACTGAGTTTATGTTCTCATGAAGGTGATGGATTTTTTTTAAAAGGCTTCAAATTGAGTAATGGGGGATAGCGATTTAGAACAGGAAACCTTTATGCGTAAGTTCTGTATTGTACCTACAAGTCAGTATGGCCCAAACTGTGGAAATAGTTGGTTTCACCAACATAGGATGGCCAGTCTGAGGAAAATTCTACAACCTTGTTGAGCACCTCTGAAAGAAAATGAAGCTAAGCCATTGATTGAAAATTGATAGAGTGAACCATGACGGAAGGAGATAGTGACAGAATGAAGCTATAGCCATTGATTGAAAATTGATGGTTGAGGTTTGAAACAATTATCACCCACTGCAATGGGCTTCAGCCTAGTAATTTTAATAAATGATAAAATGGACATGTCTTTTGCAGATTAGTTACGTTCAGTGCGAATCAATGTCATTCTGTTAAGCCACCAATGTCATTCTTGTTATTGCTTCTTTTTTTAATATATATATTTTTTCTTTGTAATTGTTATGGCTAACCAATATGTTATGGTTTCTTGTATATTATCATTATCAACATTCTTTTATGCCTATAGACTTCAATTTATTCCATGCAAGTGCTTACTGCTAACTAGATATGCCGCTCTTTCACTAAGCTTTGTTTATATATGTTGCCCTTTCGCTTGAGCAAATTTTTGTTCCGTAAACTGAGAATATGCATACTACAGGCAGAGGAAGCACAAAAAATGCGCAAAAGAAAAAAGGCTGAGAATAGCCGATTGCTGGACATTGAAAGAAGGTCAAAAGAACGCCTTGAAGAAGTGAGAGAGACACTAAAGAAGGTTGCAATTATCTCTTCTAAATTGGTGTTTCTCATGCTAATTATACATCATGTTTTCATTATTATTATTTGTTACTTTGATTTTTTATTCTCCTTTATTTAAATTTGGTGGACTTGGATTTTCTTAAGTATATCCCCTCACTTCAGAGGAGCTAGATCAATGTTTCACCATTTGAATGTCTTCTTTCATGATTTAGTGTGAACCTAGTTTAGTCATAGAACTTTGTTGTAGCTGATTGTTTTTTGTGTTAATCTTGTACTTTCATGCCAAATTCAGGACAAAGAATTAATGAACACGAAAGATGAACTGCGGGTCGAAATAAAGAAGAAGCTCAATCATTTGGAGAATCAATGCATAGATATGACCTCGCTGCTTCGTGGCTTAGGAGTAAATGTGGGGGCAAGTCTTAGACCATCGCCAAAGGAG

Protein sequence

>MS.gene90604.t1

MLGKGVSREHFQPRTCSSGKNASKTGQAKGDLENIVFIDLDNDQYDDVEIIGSSGPSKDRTSTPQSVISIDDDDDDDDDDDDDDDDDDDGSDDVDQSGIDVDGVGELDSDASSNKRFSMPSSSAWKSVYVDVDDCDVYENGPVSKRQKSNKASASNVRKKVFSPNAKERNRYGLYGSESDSSDSDCSDCEVIKREQWEEDTAMKKGRVFNEHVSSSGLHTNNYNNIEAENRSEKHGKGPLYGPSCSKENQSSFTGEDDIRNGERTTKKKVNPCPKSKNCNFCNDGIGSSKSRNELGDDESTFKDDIQHGEKVSACPNSENSNFCNGVAGSSSLKQGLGDKESKFMSSNQGAHDMQVDDDESPLNAHDGQVDNDESPLRSKDDNISEENSNGASFDERHINGHDELALHTQDADLTASNEKNIINQKEKHKQTDLYKKAMEEEMASRQRQLQIQAEEAQKMRKRKKAENSRLLDIERRSKERLEEVRETLKKDKELMNTKDELRVEIKKKLNHLENQCIDMTSLLRGLGVNVGASLRPSPKE