Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90604.t1 | XP_003614255.2 | 93.5 | 542 | 31 | 3 | 1 | 541 | 1 | 539 | 6.70E-180 | 640.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90604.t1 | G7JY54 | 93.5 | 542 | 31 | 3 | 1 | 541 | 1 | 539 | 4.8e-180 | 640.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90604 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene90604 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene90604 | 0.802549 | 5.32E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene90604 | 0.821831 | 3.28E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene90604 | 0.822477 | 2.32E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene90604 | 0.873646 | 1.25E-67 | -1.69E-46 |
| MS.gene049368 | MS.gene90604 | 0.808661 | 2.78E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene90604 | -0.837817 | 4.16E-57 | -1.69E-46 |
| MS.gene049499 | MS.gene90604 | 0.886827 | 2.44E-72 | -1.69E-46 |
| MS.gene049801 | MS.gene90604 | 0.802358 | 5.83E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene90604 | 0.882394 | 1.08E-70 | -1.69E-46 |
| MS.gene050105 | MS.gene90604 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene050213 | MS.gene90604 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene90604 | 0.860976 | 1.42E-63 | -1.69E-46 |
| MS.gene050654 | MS.gene90604 | 0.866077 | 3.71E-65 | -1.69E-46 |
| MS.gene050737 | MS.gene90604 | 0.830577 | 2.72E-55 | -1.69E-46 |
| MS.gene050759 | MS.gene90604 | 0.805533 | 1.27E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene90604 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene90604 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene90604 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene051209 | MS.gene90604 | 0.816474 | 5.43E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene90604 | 0.813382 | 2.63E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene90604 | 0.822194 | 2.70E-53 | -1.69E-46 |
| MS.gene051597 | MS.gene90604 | 0.818849 | 1.58E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene90604 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene90604 | 0.824742 | 6.84E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene90604 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene90604 | 0.845142 | 4.88E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene90604 | 0.806279 | 8.89E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene90604 | 0.804803 | 1.81E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene90604 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene052534 | MS.gene90604 | 0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene90604 | 0.814178 | 1.76E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene90604 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene90604 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene90604 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene90604 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene90604 | 0.807223 | 5.61E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene90604 | 0.84836 | 6.44E-60 | -1.69E-46 |
| MS.gene053963 | MS.gene90604 | 0.854125 | 1.52E-61 | -1.69E-46 |
| MS.gene05439 | MS.gene90604 | 0.806309 | 8.76E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene90604 | 0.869986 | 2.05E-66 | -1.69E-46 |
| MS.gene054576 | MS.gene90604 | 0.801506 | 8.72E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene90604 | 0.819534 | 1.10E-52 | -1.69E-46 |
| MS.gene054641 | MS.gene90604 | 0.804821 | 1.80E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene90604 | 0.814547 | 1.46E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene90604 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene90604 | 0.860287 | 2.29E-63 | -1.69E-46 |
| MS.gene054893 | MS.gene90604 | 0.857736 | 1.33E-62 | -1.69E-46 |
| MS.gene054957 | MS.gene90604 | 0.837007 | 6.70E-57 | -1.69E-46 |
| MS.gene055327 | MS.gene90604 | 0.807645 | 4.57E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene90604 | 0.816266 | 6.04E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene90604 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene90604 | 0.804697 | 1.91E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene90604 | 0.828855 | 7.13E-55 | -1.69E-46 |
| MS.gene056045 | MS.gene90604 | 0.838865 | 2.23E-57 | -1.69E-46 |
| MS.gene05615 | MS.gene90604 | 0.804433 | 2.17E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene90604 | 0.818828 | 1.60E-52 | -1.69E-46 |
| MS.gene056519 | MS.gene90604 | 0.800596 | 1.34E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene90604 | 0.837285 | 5.69E-57 | -1.69E-46 |
| MS.gene056776 | MS.gene90604 | 0.831896 | 1.29E-55 | -1.69E-46 |
| MS.gene056779 | MS.gene90604 | 0.807543 | 4.80E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene90604 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene90604 | 0.833091 | 6.51E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene90604 | 0.800769 | 1.23E-48 | -1.69E-46 |
| MS.gene056973 | MS.gene90604 | 0.850547 | 1.58E-60 | -1.69E-46 |
| MS.gene056986 | MS.gene90604 | 0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene90604 | 0.833225 | 6.03E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene90604 | 0.838169 | 3.37E-57 | -1.69E-46 |
| MS.gene057174 | MS.gene90604 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene90604 | 0.844107 | 9.28E-59 | -1.69E-46 |
| MS.gene057371 | MS.gene90604 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene90604 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene90604 | -0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene057893 | MS.gene90604 | -0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene057919 | MS.gene90604 | 0.828418 | 9.09E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene90604 | 0.807426 | 5.09E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene90604 | 0.83655 | 8.76E-57 | -1.69E-46 |
| MS.gene058159 | MS.gene90604 | 0.850858 | 1.29E-60 | -1.69E-46 |
| MS.gene058223 | MS.gene90604 | -0.806962 | 6.38E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene90604 | 0.815558 | 8.69E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene90604 | 0.812897 | 3.36E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene90604 | 0.850362 | 1.78E-60 | -1.69E-46 |
| MS.gene058427 | MS.gene90604 | 0.824662 | 7.15E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene90604 | 0.856103 | 4.03E-62 | -1.69E-46 |
| MS.gene058520 | MS.gene90604 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene90604 | 0.815951 | 7.11E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene90604 | 0.837445 | 5.18E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene90604 | 0.814041 | 1.89E-51 | -1.69E-46 |
| MS.gene05878 | MS.gene90604 | 0.802528 | 5.37E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene90604 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene059144 | MS.gene90604 | 0.811075 | 8.39E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene90604 | 0.817333 | 3.48E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene90604 | 0.828362 | 9.38E-55 | -1.69E-46 |
| MS.gene059439 | MS.gene90604 | 0.803198 | 3.91E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene90604 | 0.845285 | 4.47E-59 | -1.69E-46 |
| MS.gene059686 | MS.gene90604 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene90604 | -0.828756 | 7.53E-55 | -1.69E-46 |
| MS.gene059901 | MS.gene90604 | -0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene060011 | MS.gene90604 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene90604 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene060244 | MS.gene90604 | 0.817918 | 2.57E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene90604 | 0.832503 | 9.11E-56 | -1.69E-46 |
| MS.gene060365 | MS.gene90604 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene90604 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene060413 | MS.gene90604 | 0.819074 | 1.41E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene90604 | 0.842351 | 2.73E-58 | -1.69E-46 |
| MS.gene060520 | MS.gene90604 | 0.839728 | 1.33E-57 | -1.69E-46 |
| MS.gene060522 | MS.gene90604 | 0.812679 | 3.75E-51 | -1.69E-46 |
| MS.gene060527 | MS.gene90604 | 0.814178 | 1.76E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene90604 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene90604 | 0.827663 | 1.38E-54 | -1.69E-46 |
| MS.gene060785 | MS.gene90604 | 0.821303 | 4.34E-53 | -1.69E-46 |
| MS.gene060840 | MS.gene90604 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene90604 | 0.833404 | 5.44E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene90604 | 0.841763 | 3.90E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene90604 | 0.840154 | 1.03E-57 | -1.69E-46 |
| MS.gene060932 | MS.gene90604 | 0.837898 | 3.96E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene90604 | 0.897628 | 1.17E-76 | -1.69E-46 |
| MS.gene060935 | MS.gene90604 | 0.877992 | 4.03E-69 | -1.69E-46 |
| MS.gene060937 | MS.gene90604 | 0.89545 | 9.48E-76 | -1.69E-46 |
| MS.gene061100 | MS.gene90604 | 0.807428 | 5.08E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene90604 | 0.821057 | 4.94E-53 | -1.69E-46 |
| MS.gene06121 | MS.gene90604 | 0.803955 | 2.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90604.t1 | MTR_5g047140 | 95.018 | 542 | 23 | 3 | 1 | 541 | 1 | 539 | 0.0 | 970 |
| MS.gene90604.t1 | MTR_5g047140 | 94.714 | 454 | 21 | 2 | 1 | 454 | 1 | 451 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90604.t1 | AT1G69060 | 58.333 | 120 | 50 | 0 | 422 | 541 | 463 | 582 | 2.04e-34 | 137 |
Find 104 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTCGCCTGACCAGTTT+TGG | 0.189270 | 5.1:+35057387 | None:intergenic |
| AGAAATCGTTATGGTTTATA+TGG | 0.200313 | 5.1:-35056950 | MS.gene90604:CDS |
| AATGAGCATGTCAGTTCTTC+TGG | 0.236888 | 5.1:-35056827 | MS.gene90604:CDS |
| AGAGGATACCGCAATGAAAA+AGG | 0.281900 | 5.1:-35056861 | MS.gene90604:CDS |
| TGATGACGAGTCTACATTTA+AGG | 0.306104 | 5.1:-35056567 | MS.gene90604:CDS |
| CGATTTCTTTCTTTAGCGTT+TGG | 0.328724 | 5.1:+35056965 | None:intergenic |
| CAGCCTCGAACATGTTCTTC+GGG | 0.335354 | 5.1:-35057421 | MS.gene90604:CDS |
| GGCTGAGAATAGCCGATTGC+TGG | 0.345114 | 5.1:-35054367 | MS.gene90604:CDS |
| ATAACATAGAAGCGGAAAAT+AGG | 0.354976 | 5.1:-35056784 | MS.gene90604:CDS |
| GACTGTGATGTCTATGAAAA+TGG | 0.355128 | 5.1:-35057055 | MS.gene90604:CDS |
| AGAAAGGACAACTAAGAAAA+AGG | 0.357996 | 5.1:-35056669 | MS.gene90604:CDS |
| AAAGAAGAAGCTCAATCATT+TGG | 0.361204 | 5.1:-35053968 | MS.gene90604:CDS |
| GTCATCACCCAGTTCATTCC+TGG | 0.362711 | 5.1:+35056583 | None:intergenic |
| GTGTCTCTCTCACTTCTTCA+AGG | 0.364573 | 5.1:+35054319 | None:intergenic |
| AATTTCTGTAACGGTGTTGC+TGG | 0.370750 | 5.1:-35056491 | MS.gene90604:CDS |
| TAAACACAACTTGCCTCCTT+TGG | 0.390211 | 5.1:+35053871 | None:intergenic |
| ACAGAGACAATTGCAAATTC+AGG | 0.403793 | 5.1:-35056117 | MS.gene90604:intron |
| TTCAAAGTCCAGGAATGAAC+TGG | 0.404582 | 5.1:-35056591 | MS.gene90604:CDS |
| ACCTCGCTGCTTCGTGGCTT+AGG | 0.405340 | 5.1:-35053925 | MS.gene90604:CDS |
| TCAGCCTCGAACATGTTCTT+CGG | 0.405508 | 5.1:-35057422 | MS.gene90604:CDS |
| AATTTCTGTAACGATGGTAT+TGG | 0.406873 | 5.1:-35056617 | MS.gene90604:CDS |
| GGGAAGAATGCATCCAAAAC+TGG | 0.409192 | 5.1:-35057400 | MS.gene90604:CDS |
| GGATGCCATTTCCTCTTCCA+TGG | 0.411553 | 5.1:+35056142 | None:intergenic |
| GTCGATGTTCTATCTTTACT+TGG | 0.415664 | 5.1:+35057289 | None:intergenic |
| AATTTGCAATTGTCTCTGTC+TGG | 0.419574 | 5.1:+35056121 | None:intergenic |
| ATTTCTGAAGAGAATTCTAA+TGG | 0.431168 | 5.1:-35056305 | MS.gene90604:CDS |
| TTCTTTCAATGTCCAGCAAT+CGG | 0.431241 | 5.1:+35054355 | None:intergenic |
| AAAAGCCATGGAAGAGGAAA+TGG | 0.433668 | 5.1:-35056147 | MS.gene90604:CDS |
| CATGGGAAAGGTCCTTTATA+TGG | 0.433963 | 5.1:-35056752 | MS.gene90604:CDS |
| TTGTCATCTTTACTCCTCAA+TGG | 0.439565 | 5.1:+35056329 | None:intergenic |
| CCAAAACTGGTCAGGCGAAA+GGG | 0.450590 | 5.1:-35057387 | MS.gene90604:CDS |
| GAAATCGTTATGGTTTATAT+GGG | 0.451015 | 5.1:-35056949 | MS.gene90604:CDS |
| CATGTCATGTGCACCTTGGT+TGG | 0.453848 | 5.1:+35056415 | None:intergenic |
| GATATGCCTTTCATCAAAAG+AGG | 0.454831 | 5.1:+35056280 | None:intergenic |
| TATGATGATGTAGAAATCAT+AGG | 0.455972 | 5.1:-35057322 | MS.gene90604:CDS |
| ATATGGTCCTAGTTGTAGTA+AGG | 0.458017 | 5.1:-35056735 | MS.gene90604:CDS |
| CTACAACTAGGACCATATAA+AGG | 0.459702 | 5.1:+35056740 | None:intergenic |
| TGTTGATGGTGTTGGAGAGT+TGG | 0.461044 | 5.1:-35057155 | MS.gene90604:CDS |
| GCGATGCCTCTTCAAACAAA+AGG | 0.465308 | 5.1:-35057129 | MS.gene90604:CDS |
| GCTAAAGAAAGAAATCGTTA+TGG | 0.468168 | 5.1:-35056959 | MS.gene90604:CDS |
| TCTATCTTTACTTGGCCCAC+TGG | 0.468887 | 5.1:+35057297 | None:intergenic |
| GGAATTGATGTTGATGGTGT+TGG | 0.481618 | 5.1:-35057163 | MS.gene90604:CDS |
| GATATGACCTCGCTGCTTCG+TGG | 0.484325 | 5.1:-35053931 | MS.gene90604:CDS |
| GATTTCCACGCGGAACTTGA+GGG | 0.489022 | 5.1:+35057097 | None:intergenic |
| TCAAGTTTGAAGCAAGGACT+AGG | 0.490468 | 5.1:-35056464 | MS.gene90604:CDS |
| GAATGCATCCAAAACTGGTC+AGG | 0.491520 | 5.1:-35057395 | MS.gene90604:CDS |
| TCACTGGTGAGGATGATATT+CGG | 0.494559 | 5.1:-35056697 | MS.gene90604:CDS |
| AGATTTCCACGCGGAACTTG+AGG | 0.495937 | 5.1:+35057096 | None:intergenic |
| TTTGATGAAAGGCATATCAA+TGG | 0.497644 | 5.1:-35056275 | MS.gene90604:CDS |
| TGTCCGTCATGTGCATTCAA+TGG | 0.499716 | 5.1:+35056371 | None:intergenic |
| AACTGTAATTTCTGTAACGA+TGG | 0.503873 | 5.1:-35056623 | MS.gene90604:CDS |
| GAGAATCAATCTTCCTTCAC+TGG | 0.508407 | 5.1:-35056713 | MS.gene90604:CDS |
| CAGGTATAGATGCTTGGAAA+AGG | 0.509013 | 5.1:-35057463 | None:intergenic |
| CAGTCTGGAATTGATGTTGA+TGG | 0.512375 | 5.1:-35057169 | MS.gene90604:CDS |
| TTCCCCGAAGAACATGTTCG+AGG | 0.519864 | 5.1:+35057418 | None:intergenic |
| CGTGGCTTAGGAGTAAATGT+GGG | 0.525737 | 5.1:-35053913 | MS.gene90604:CDS |
| TCCAAAACTGGTCAGGCGAA+AGG | 0.525772 | 5.1:-35057388 | MS.gene90604:CDS |
| ATGATATTCGGAATGGAGAA+AGG | 0.529183 | 5.1:-35056685 | MS.gene90604:CDS |
| GTGATGCAGGTATAGATGCT+TGG | 0.534613 | 5.1:-35057469 | None:intergenic |
| AGTGATGATGTGGATCAGTC+TGG | 0.534934 | 5.1:-35057184 | MS.gene90604:CDS |
| GATGATGATGACGACGATGA+TGG | 0.539323 | 5.1:-35057208 | MS.gene90604:CDS |
| CAACTTGCCTCCTTTGGCGA+TGG | 0.541317 | 5.1:+35053877 | None:intergenic |
| GTATTGGTTCTTCAAAGTCC+AGG | 0.548601 | 5.1:-35056601 | MS.gene90604:CDS |
| GAAAATAGGTCTGAAAAGCA+TGG | 0.554736 | 5.1:-35056770 | MS.gene90604:CDS |
| AAAACGTGAACAGTGGGAAG+AGG | 0.555343 | 5.1:-35056879 | MS.gene90604:CDS |
| TCGTGGCTTAGGAGTAAATG+TGG | 0.557564 | 5.1:-35053914 | MS.gene90604:CDS |
| TTTAAGGATGATATTCAGCA+TGG | 0.562013 | 5.1:-35056551 | MS.gene90604:CDS |
| CAAAACTGGTCAGGCGAAAG+GGG | 0.562765 | 5.1:-35057386 | MS.gene90604:CDS |
| AGTGAGAGAGACACTAAAGA+AGG | 0.569017 | 5.1:-35054310 | MS.gene90604:intron |
| AATATCATCCTCACCAGTGA+AGG | 0.573976 | 5.1:+35056700 | None:intergenic |
| GGTTCTTCAAGTTTGAAGCA+AGG | 0.574153 | 5.1:-35056470 | MS.gene90604:CDS |
| GAAAACTCTAATTTCTGTAA+CGG | 0.577066 | 5.1:-35056500 | MS.gene90604:CDS |
| CTTGCATGTCATGTGCACCT+TGG | 0.589414 | 5.1:+35056411 | None:intergenic |
| GAACACGAAAGATGAACTGC+GGG | 0.589520 | 5.1:-35053998 | MS.gene90604:CDS |
| GGTGAGGATGATATTCGGAA+TGG | 0.591451 | 5.1:-35056692 | MS.gene90604:CDS |
| TGATTCTCCTTACTACAACT+AGG | 0.592848 | 5.1:+35056728 | None:intergenic |
| AAAATAGGTCTGAAAAGCAT+GGG | 0.595327 | 5.1:-35056769 | MS.gene90604:CDS |
| TCAATCTTCCTTCACTGGTG+AGG | 0.595363 | 5.1:-35056708 | MS.gene90604:CDS |
| AGGTCTGAAAAGCATGGGAA+AGG | 0.602874 | 5.1:-35056764 | MS.gene90604:CDS |
| GATTGCTGGACATTGAAAGA+AGG | 0.617880 | 5.1:-35054353 | MS.gene90604:CDS |
| TCTTAGACCATCGCCAAAGG+AGG | 0.621225 | 5.1:-35053884 | None:intergenic |
| CGATGATGGAAGTGATGATG+TGG | 0.622416 | 5.1:-35057194 | MS.gene90604:CDS |
| GTGGCTTAGGAGTAAATGTG+GGG | 0.622737 | 5.1:-35053912 | MS.gene90604:CDS |
| GGTCATAAAACGTGAACAGT+GGG | 0.631375 | 5.1:-35056885 | MS.gene90604:CDS |
| AAGTCTTAGACCATCGCCAA+AGG | 0.637737 | 5.1:-35053887 | MS.gene90604:CDS |
| TAATTACAATAACATAGAAG+CGG | 0.637745 | 5.1:-35056792 | MS.gene90604:CDS |
| TCAAAGTCCAGGAATGAACT+GGG | 0.638802 | 5.1:-35056590 | MS.gene90604:CDS |
| AGGTCATAAAACGTGAACAG+TGG | 0.641789 | 5.1:-35056886 | MS.gene90604:CDS |
| TCTCCATTGAATGCACATGA+CGG | 0.644527 | 5.1:-35056374 | MS.gene90604:CDS |
| AAATTTATGAGCTCCAACCA+AGG | 0.645106 | 5.1:-35056428 | MS.gene90604:CDS |
| AAGCTTCTGCTTCTAACGTG+CGG | 0.646962 | 5.1:-35057003 | MS.gene90604:CDS |
| TGACATGCTCATTAAACACA+CGG | 0.647259 | 5.1:+35056837 | None:intergenic |
| ACAATGATGAATCTCCATTG+AGG | 0.653343 | 5.1:-35056343 | MS.gene90604:CDS |
| GTAGAAATCATAGGATCCAG+TGG | 0.663165 | 5.1:-35057313 | MS.gene90604:CDS |
| TAGAAATCATAGGATCCAGT+GGG | 0.671951 | 5.1:-35057312 | MS.gene90604:CDS |
| AGCCTCGAACATGTTCTTCG+GGG | 0.672871 | 5.1:-35057420 | MS.gene90604:CDS |
| AAAATGGTCCTGTTTCGAAG+AGG | 0.678343 | 5.1:-35057039 | MS.gene90604:CDS |
| TAGCGATTGTTCTGATTGTG+AGG | 0.680578 | 5.1:-35056906 | MS.gene90604:CDS |
| TGAACACGAAAGATGAACTG+CGG | 0.691989 | 5.1:-35053999 | MS.gene90604:CDS |
| TCCTAAGCCACGAAGCAGCG+AGG | 0.703909 | 5.1:+35053924 | None:intergenic |
| TCAATGCTGATAACACTCTG+AGG | 0.705556 | 5.1:+35057265 | None:intergenic |
| CTATGCCCTCAAGTTCCGCG+TGG | 0.708335 | 5.1:-35057102 | MS.gene90604:CDS |
| TGGCTTAGGAGTAAATGTGG+GGG | 0.719417 | 5.1:-35053911 | MS.gene90604:CDS |
| TACGTATACAGATTTCCACG+CGG | 0.870448 | 5.1:+35057087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCATTTATTAAAATTACT+AGG | + | chr5.1:35056595-35056614 | None:intergenic | 10.0% |
| !!! | TATTCTCCTTTATTTAAATT+TGG | - | chr5.1:35057136-35057155 | MS.gene90604:CDS | 15.0% |
| !!! | TTTTTTCTTTGTAATTGTTA+TGG | - | chr5.1:35056721-35056740 | MS.gene90604:CDS | 15.0% |
| !! | ACATATCCATTTAATAATCA+TGG | + | chr5.1:35055526-35055545 | None:intergenic | 20.0% |
| !! | ACATCACACTTATAAAATTT+AGG | + | chr5.1:35055895-35055914 | None:intergenic | 20.0% |
| !! | ATGATATAATGTGAAACTAT+AGG | - | chr5.1:35055433-35055452 | MS.gene90604:intron | 20.0% |
| !! | TAATTACAATAACATAGAAG+CGG | - | chr5.1:35054547-35054566 | MS.gene90604:intron | 20.0% |
| !!! | AAATTACAGTTTTTTGACTT+GGG | + | chr5.1:35054707-35054726 | None:intergenic | 20.0% |
| !!! | TATATTTTTCTCATTTGAAG+CGG | + | chr5.1:35055131-35055150 | None:intergenic | 20.0% |
| !!! | TTAGCATATTTTTCTTTTCA+TGG | + | chr5.1:35055577-35055596 | None:intergenic | 20.0% |
| ! | AAAAATGCGCAAAAGAAAAA+AGG | - | chr5.1:35056951-35056970 | MS.gene90604:CDS | 25.0% |
| ! | AAATTTAGGCCTAAATTACA+AGG | + | chr5.1:35055881-35055900 | None:intergenic | 25.0% |
| ! | AATATCCAGATGTATAACAT+TGG | + | chr5.1:35056165-35056184 | None:intergenic | 25.0% |
| ! | AGAAATCGTTATGGTTTATA+TGG | - | chr5.1:35054389-35054408 | MS.gene90604:CDS | 25.0% |
| ! | AGTCCACCAAATTTAAATAA+AGG | + | chr5.1:35057145-35057164 | None:intergenic | 25.0% |
| ! | CACTTACATACATTAGTAAT+AGG | + | chr5.1:35055858-35055877 | None:intergenic | 25.0% |
| ! | GAAAACTCTAATTTCTGTAA+CGG | - | chr5.1:35054839-35054858 | MS.gene90604:intron | 25.0% |
| ! | GAAATCGTTATGGTTTATAT+GGG | - | chr5.1:35054390-35054409 | MS.gene90604:CDS | 25.0% |
| ! | GTTATACATCTGGATATTAA+TGG | - | chr5.1:35056167-35056186 | MS.gene90604:CDS | 25.0% |
| ! | TAAATACACATGCATTTACA+AGG | + | chr5.1:35055360-35055379 | None:intergenic | 25.0% |
| ! | TACAAGAAACCATAACATAT+TGG | + | chr5.1:35056751-35056770 | None:intergenic | 25.0% |
| ! | TATTAAATGGATATGTGTGT+GGG | - | chr5.1:35055530-35055549 | MS.gene90604:intron | 25.0% |
| ! | TCATCTCCATGATTATTAAA+TGG | - | chr5.1:35055517-35055536 | MS.gene90604:intron | 25.0% |
| ! | TGATTTATACAAAAAAGCCA+TGG | - | chr5.1:35055180-35055199 | MS.gene90604:intron | 25.0% |
| ! | TGCAATTATCTCTTCTAAAT+TGG | - | chr5.1:35057053-35057072 | MS.gene90604:CDS | 25.0% |
| ! | TGGAATAAATTGAAGTCTAT+AGG | + | chr5.1:35056801-35056820 | None:intergenic | 25.0% |
| ! | TTAATTCTTTGTCCTGAATT+TGG | + | chr5.1:35057320-35057339 | None:intergenic | 25.0% |
| ! | TTACATACATTAGTAATAGG+AGG | + | chr5.1:35055855-35055874 | None:intergenic | 25.0% |
| ! | TTATTAAATGGATATGTGTG+TGG | - | chr5.1:35055529-35055548 | MS.gene90604:intron | 25.0% |
| !! | AAATTAGAGTTTTCAGAGTT+GGG | + | chr5.1:35054833-35054852 | None:intergenic | 25.0% |
| !! | AACCATCAATTTTCAATCAA+TGG | + | chr5.1:35056532-35056551 | None:intergenic | 25.0% |
| !! | ATTTCTGAAGAGAATTCTAA+TGG | - | chr5.1:35055034-35055053 | MS.gene90604:intron | 25.0% |
| !! | ATTTTTCATCTATCTGCTAA+AGG | + | chr5.1:35055759-35055778 | None:intergenic | 25.0% |
| !! | CTCTATCAATTTTCAATCAA+TGG | + | chr5.1:35056467-35056486 | None:intergenic | 25.0% |
| !! | TATGATGATGTAGAAATCAT+AGG | - | chr5.1:35054017-35054036 | MS.gene90604:intron | 25.0% |
| !! | TCTCCTTTATTTAAATTTGG+TGG | - | chr5.1:35057139-35057158 | MS.gene90604:CDS | 25.0% |
| !!! | AATTACAGTTTTTTGACTTG+GGG | + | chr5.1:35054706-35054725 | None:intergenic | 25.0% |
| !!! | ACTGAAGCATTTATAGTTTT+AGG | - | chr5.1:35055404-35055423 | MS.gene90604:intron | 25.0% |
| !!! | GAAATTACAGTTTTTTGACT+TGG | + | chr5.1:35054708-35054727 | None:intergenic | 25.0% |
| !!! | GGTGATGGATTTTTTTTAAA+AGG | - | chr5.1:35056256-35056275 | MS.gene90604:CDS | 25.0% |
| !!! | TTATTTAAATTTGGTGGACT+TGG | - | chr5.1:35057145-35057164 | MS.gene90604:CDS | 25.0% |
| AAAGAAGAAGCTCAATCATT+TGG | - | chr5.1:35057371-35057390 | MS.gene90604:CDS | 30.0% | |
| AAAGGCTTCAAATTGAGTAA+TGG | - | chr5.1:35056274-35056293 | MS.gene90604:CDS | 30.0% | |
| AAATTCAGGTGATTCACATA+TGG | - | chr5.1:35055236-35055255 | MS.gene90604:intron | 30.0% | |
| AACTGTAATTTCTGTAACGA+TGG | - | chr5.1:35054716-35054735 | MS.gene90604:intron | 30.0% | |
| AACTTAGTGGAACTCAATTT+GGG | + | chr5.1:35055792-35055811 | None:intergenic | 30.0% | |
| AAGGCTTCAAATTGAGTAAT+GGG | - | chr5.1:35056275-35056294 | MS.gene90604:CDS | 30.0% | |
| AATAACAAGAATGACATTGG+TGG | + | chr5.1:35056679-35056698 | None:intergenic | 30.0% | |
| AATACAGAACTTACGCATAA+AGG | + | chr5.1:35056324-35056343 | None:intergenic | 30.0% | |
| AATTCCATATACGATCAGAA+TGG | - | chr5.1:35056133-35056152 | MS.gene90604:CDS | 30.0% | |
| AATTTCTGTAACGATGGTAT+TGG | - | chr5.1:35054722-35054741 | MS.gene90604:intron | 30.0% | |
| ACTAAATGAGAGAACAAAAC+AGG | - | chr5.1:35055642-35055661 | MS.gene90604:intron | 30.0% | |
| ACTATAGGAGTTTCAAATCA+AGG | - | chr5.1:35055448-35055467 | MS.gene90604:intron | 30.0% | |
| AGAAAGGACAACTAAGAAAA+AGG | - | chr5.1:35054670-35054689 | MS.gene90604:intron | 30.0% | |
| AGAGGTAGTTACAGAAAATA+GGG | + | chr5.1:35056049-35056068 | None:intergenic | 30.0% | |
| AGCAATAACAAGAATGACAT+TGG | + | chr5.1:35056682-35056701 | None:intergenic | 30.0% | |
| ATAACATAGAAGCGGAAAAT+AGG | - | chr5.1:35054555-35054574 | MS.gene90604:intron | 30.0% | |
| ATATACGATCAGAATGGTTT+AGG | - | chr5.1:35056139-35056158 | MS.gene90604:CDS | 30.0% | |
| ATGTAAGTGCCTTGTAATTT+AGG | - | chr5.1:35055869-35055888 | MS.gene90604:intron | 30.0% | |
| CAAAGTTCTATGACTAAACT+AGG | + | chr5.1:35057256-35057275 | None:intergenic | 30.0% | |
| CATGAAAGAAGACATTCAAA+TGG | + | chr5.1:35057221-35057240 | None:intergenic | 30.0% | |
| GAATAACAATAGTAGATCTC+AGG | + | chr5.1:35055499-35055518 | None:intergenic | 30.0% | |
| GATATTATTGATCTTCTCTG+TGG | + | chr5.1:35056084-35056103 | None:intergenic | 30.0% | |
| GCTAAAGAAAGAAATCGTTA+TGG | - | chr5.1:35054380-35054399 | MS.gene90604:CDS | 30.0% | |
| GTATGCATATTCTCAGTTTA+CGG | + | chr5.1:35056912-35056931 | None:intergenic | 30.0% | |
| TAAACCATTCTGATCGTATA+TGG | + | chr5.1:35056140-35056159 | None:intergenic | 30.0% | |
| TAAAGAGCCAAAACATGTAA+AGG | + | chr5.1:35055297-35055316 | None:intergenic | 30.0% | |
| TAACTTAGTGGAACTCAATT+TGG | + | chr5.1:35055793-35055812 | None:intergenic | 30.0% | |
| TAGTTCTCTTACATGTTGAA+GGG | - | chr5.1:35055327-35055346 | MS.gene90604:intron | 30.0% | |
| TATGGCTAACCAATATGTTA+TGG | - | chr5.1:35056739-35056758 | MS.gene90604:CDS | 30.0% | |
| TTTAAGGATGATATTCAGCA+TGG | - | chr5.1:35054788-35054807 | MS.gene90604:intron | 30.0% | |
| ! | AAAAATTTGCTCAAGCGAAA+GGG | + | chr5.1:35056886-35056905 | None:intergenic | 30.0% |
| ! | AAAATAGGTCTGAAAAGCAT+GGG | - | chr5.1:35054570-35054589 | MS.gene90604:intron | 30.0% |
| ! | AATTAGAGTTTTCAGAGTTG+GGG | + | chr5.1:35054832-35054851 | None:intergenic | 30.0% |
| ! | AGCCATTGATTGAAAATTGA+TGG | - | chr5.1:35056462-35056481 | MS.gene90604:CDS | 30.0% |
| ! | GAAATTAGAGTTTTCAGAGT+TGG | + | chr5.1:35054834-35054853 | None:intergenic | 30.0% |
| ! | TGATTGAAAATTGATGGTTG+AGG | - | chr5.1:35056533-35056552 | MS.gene90604:CDS | 30.0% |
| ! | TGTTATGCCTTTACATGTTT+TGG | - | chr5.1:35055287-35055306 | MS.gene90604:intron | 30.0% |
| ! | TTAGCTTCATTTTCTTTCAG+AGG | + | chr5.1:35056443-35056462 | None:intergenic | 30.0% |
| ! | TTTGATGAAAGGCATATCAA+TGG | - | chr5.1:35055064-35055083 | MS.gene90604:intron | 30.0% |
| !! | AGAAAACCTTTTGTTTGAAG+AGG | + | chr5.1:35054219-35054238 | None:intergenic | 30.0% |
| AAATTTATGAGCTCCAACCA+AGG | - | chr5.1:35054911-35054930 | MS.gene90604:intron | 35.0% | |
| AACAAAGCTTAGTGAAAGAG+CGG | + | chr5.1:35056852-35056871 | None:intergenic | 35.0% | |
| AACCAACTATTTCCACAGTT+TGG | + | chr5.1:35056368-35056387 | None:intergenic | 35.0% | |
| AATTTGCAATTGTCTCTGTC+TGG | + | chr5.1:35055221-35055240 | None:intergenic | 35.0% | |
| ACAATGATGAATCTCCATTG+AGG | - | chr5.1:35054996-35055015 | MS.gene90604:intron | 35.0% | |
| ACAGAGACAATTGCAAATTC+AGG | - | chr5.1:35055222-35055241 | MS.gene90604:intron | 35.0% | |
| ACCAACTATTTCCACAGTTT+GGG | + | chr5.1:35056367-35056386 | None:intergenic | 35.0% | |
| ACTGAGAATATGCATACTAC+AGG | - | chr5.1:35056915-35056934 | MS.gene90604:CDS | 35.0% | |
| AGGCTTCAAATTGAGTAATG+GGG | - | chr5.1:35056276-35056295 | MS.gene90604:CDS | 35.0% | |
| ATACAAAAAAGCCATGGAAG+AGG | - | chr5.1:35055186-35055205 | MS.gene90604:intron | 35.0% | |
| ATAGGAGTTTCAAATCAAGG+CGG | - | chr5.1:35055451-35055470 | MS.gene90604:intron | 35.0% | |
| ATATGGTCCTAGTTGTAGTA+AGG | - | chr5.1:35054604-35054623 | MS.gene90604:intron | 35.0% | |
| ATGATATTCGGAATGGAGAA+AGG | - | chr5.1:35054654-35054673 | MS.gene90604:intron | 35.0% | |
| ATTGATAGAGTGAACCATGA+CGG | - | chr5.1:35056477-35056496 | MS.gene90604:CDS | 35.0% | |
| ATTGTACCTACAAGTCAGTA+TGG | - | chr5.1:35056341-35056360 | MS.gene90604:CDS | 35.0% | |
| CAGAGGTAGTTACAGAAAAT+AGG | + | chr5.1:35056050-35056069 | None:intergenic | 35.0% | |
| CGATTTCTTTCTTTAGCGTT+TGG | + | chr5.1:35054377-35054396 | None:intergenic | 35.0% | |
| CTACAACTAGGACCATATAA+AGG | + | chr5.1:35054602-35054621 | None:intergenic | 35.0% | |
| CTGAGTTTATGTTCTCATGA+AGG | - | chr5.1:35056235-35056254 | MS.gene90604:CDS | 35.0% | |
| GAAAATAGGTCTGAAAAGCA+TGG | - | chr5.1:35054569-35054588 | MS.gene90604:intron | 35.0% | |
| GAACTCAATTTGGGAACAAT+AGG | + | chr5.1:35055783-35055802 | None:intergenic | 35.0% | |
| GACTGTGATGTCTATGAAAA+TGG | - | chr5.1:35054284-35054303 | MS.gene90604:intron | 35.0% | |
| GAGGTAGTTACAGAAAATAG+GGG | + | chr5.1:35056048-35056067 | None:intergenic | 35.0% | |
| GATATGCCTTTCATCAAAAG+AGG | + | chr5.1:35055062-35055081 | None:intergenic | 35.0% | |
| GTAGTTCTCTTACATGTTGA+AGG | - | chr5.1:35055326-35055345 | MS.gene90604:intron | 35.0% | |
| GTCGATGTTCTATCTTTACT+TGG | + | chr5.1:35054053-35054072 | None:intergenic | 35.0% | |
| TAGAAATCATAGGATCCAGT+GGG | - | chr5.1:35054027-35054046 | MS.gene90604:intron | 35.0% | |
| TGACATGCTCATTAAACACA+CGG | + | chr5.1:35054505-35054524 | None:intergenic | 35.0% | |
| TGATTCTCCTTACTACAACT+AGG | + | chr5.1:35054614-35054633 | None:intergenic | 35.0% | |
| TGTACTTTCATGCCAAATTC+AGG | - | chr5.1:35057305-35057324 | MS.gene90604:CDS | 35.0% | |
| TTAGGCCAATGTTATACATC+TGG | - | chr5.1:35056157-35056176 | MS.gene90604:CDS | 35.0% | |
| TTATGTTCTCATGAAGGTGA+TGG | - | chr5.1:35056241-35056260 | MS.gene90604:CDS | 35.0% | |
| TTCTTTCAATGTCCAGCAAT+CGG | + | chr5.1:35056987-35057006 | None:intergenic | 35.0% | |
| TTGTCATCTTTACTCCTCAA+TGG | + | chr5.1:35055013-35055032 | None:intergenic | 35.0% | |
| ! | ATAGTTGGTTTCACCAACAT+AGG | - | chr5.1:35056378-35056397 | MS.gene90604:CDS | 35.0% |
| ! | ATCTGGATATTAATGGACGA+AGG | - | chr5.1:35056174-35056193 | MS.gene90604:CDS | 35.0% |
| ! | CAAAAATTTGCTCAAGCGAA+AGG | + | chr5.1:35056887-35056906 | None:intergenic | 35.0% |
| ! | CATGTAAAGGCATAACAGAA+AGG | + | chr5.1:35055284-35055303 | None:intergenic | 35.0% |
| ! | GGCTCATAAGATTTTCAATG+AGG | + | chr5.1:35055738-35055757 | None:intergenic | 35.0% |
| ! | TGATGACGAGTCTACATTTA+AGG | - | chr5.1:35054772-35054791 | MS.gene90604:intron | 35.0% |
| ! | TTGTAGAATTTTCCTCAGAC+TGG | + | chr5.1:35056408-35056427 | None:intergenic | 35.0% |
| ! | TTTTCTGTAACTACCTCTGT+TGG | - | chr5.1:35056051-35056070 | MS.gene90604:intron | 35.0% |
| !! | ACTAACAAACCTCTAGGATA+TGG | + | chr5.1:35055985-35056004 | None:intergenic | 35.0% |
| !! | TTTGTTGAGTGGTTTGGTTT+GGG | - | chr5.1:35055947-35055966 | MS.gene90604:intron | 35.0% |
| !!! | CATGTTTTGGCTCTTTAAAC+AGG | - | chr5.1:35055300-35055319 | MS.gene90604:intron | 35.0% |
| AAAAGCCATGGAAGAGGAAA+TGG | - | chr5.1:35055192-35055211 | MS.gene90604:intron | 40.0% | |
| AAAATGGTCCTGTTTCGAAG+AGG | - | chr5.1:35054300-35054319 | MS.gene90604:intron | 40.0% | |
| AAACTGACACAAACTGCAGA+TGG | + | chr5.1:35056020-35056039 | None:intergenic | 40.0% | |
| AATATCATCCTCACCAGTGA+AGG | + | chr5.1:35054642-35054661 | None:intergenic | 40.0% | |
| AATATGCATACTACAGGCAG+AGG | - | chr5.1:35056921-35056940 | MS.gene90604:CDS | 40.0% | |
| AATGAGCATGTCAGTTCTTC+TGG | - | chr5.1:35054512-35054531 | MS.gene90604:intron | 40.0% | |
| ACAATTATCACCCACTGCAA+TGG | - | chr5.1:35056562-35056581 | MS.gene90604:CDS | 40.0% | |
| AGAGGATACCGCAATGAAAA+AGG | - | chr5.1:35054478-35054497 | MS.gene90604:intron | 40.0% | |
| AGGTCATAAAACGTGAACAG+TGG | - | chr5.1:35054453-35054472 | MS.gene90604:intron | 40.0% | |
| AGGTTTCTCCAATAGATACG+AGG | + | chr5.1:35055718-35055737 | None:intergenic | 40.0% | |
| AGTGAGAGAGACACTAAAGA+AGG | - | chr5.1:35057029-35057048 | MS.gene90604:CDS | 40.0% | |
| CAATTATCACCCACTGCAAT+GGG | - | chr5.1:35056563-35056582 | MS.gene90604:CDS | 40.0% | |
| CAGGAAACTAACAAACCTCT+AGG | + | chr5.1:35055991-35056010 | None:intergenic | 40.0% | |
| CATGGGAAAGGTCCTTTATA+TGG | - | chr5.1:35054587-35054606 | MS.gene90604:intron | 40.0% | |
| CTTTGACGCATCTAACTTAG+TGG | + | chr5.1:35055805-35055824 | None:intergenic | 40.0% | |
| GAGAATCAATCTTCCTTCAC+TGG | - | chr5.1:35054626-35054645 | MS.gene90604:intron | 40.0% | |
| GAGGATACCGCAATGAAAAA+GGG | - | chr5.1:35054479-35054498 | MS.gene90604:intron | 40.0% | |
| GATTGCTGGACATTGAAAGA+AGG | - | chr5.1:35056986-35057005 | MS.gene90604:CDS | 40.0% | |
| GGCTTCAAATTGAGTAATGG+GGG | - | chr5.1:35056277-35056296 | MS.gene90604:CDS | 40.0% | |
| GGTCATAAAACGTGAACAGT+GGG | - | chr5.1:35054454-35054473 | MS.gene90604:intron | 40.0% | |
| GGTTTCTCCAATAGATACGA+GGG | + | chr5.1:35055717-35055736 | None:intergenic | 40.0% | |
| GTAGAAATCATAGGATCCAG+TGG | - | chr5.1:35054026-35054045 | MS.gene90604:intron | 40.0% | |
| TACACATGCATTTACAAGGC+AGG | + | chr5.1:35055356-35055375 | None:intergenic | 40.0% | |
| TACGTATACAGATTTCCACG+CGG | + | chr5.1:35054255-35054274 | None:intergenic | 40.0% | |
| TAGCGATTGTTCTGATTGTG+AGG | - | chr5.1:35054433-35054452 | MS.gene90604:intron | 40.0% | |
| TAGGAGTTTCAAATCAAGGC+GGG | - | chr5.1:35055452-35055471 | MS.gene90604:intron | 40.0% | |
| TCAAAGTCCAGGAATGAACT+GGG | - | chr5.1:35054749-35054768 | MS.gene90604:intron | 40.0% | |
| TCAATGCTGATAACACTCTG+AGG | + | chr5.1:35054077-35054096 | None:intergenic | 40.0% | |
| TCACTGGTGAGGATGATATT+CGG | - | chr5.1:35054642-35054661 | MS.gene90604:intron | 40.0% | |
| TCTCCATTGAATGCACATGA+CGG | - | chr5.1:35054965-35054984 | MS.gene90604:intron | 40.0% | |
| TGAACACGAAAGATGAACTG+CGG | - | chr5.1:35057340-35057359 | MS.gene90604:CDS | 40.0% | |
| TTCAAAGTCCAGGAATGAAC+TGG | - | chr5.1:35054748-35054767 | MS.gene90604:intron | 40.0% | |
| TTGGTTTCACCAACATAGGA+TGG | - | chr5.1:35056382-35056401 | MS.gene90604:CDS | 40.0% | |
| ! | ATATTAATGGACGAAGGTGC+TGG | - | chr5.1:35056180-35056199 | MS.gene90604:CDS | 40.0% |
| ! | ATGGTGCCTCTTTTGATGAA+AGG | - | chr5.1:35055053-35055072 | MS.gene90604:intron | 40.0% |
| ! | CAGTCTGGAATTGATGTTGA+TGG | - | chr5.1:35054170-35054189 | MS.gene90604:intron | 40.0% |
| ! | GGTTCTTCAAGTTTGAAGCA+AGG | - | chr5.1:35054869-35054888 | MS.gene90604:intron | 40.0% |
| ! | TCAAGTTTGAAGCAAGGACT+AGG | - | chr5.1:35054875-35054894 | MS.gene90604:intron | 40.0% |
| !! | AATTTCTGTAACGGTGTTGC+TGG | - | chr5.1:35054848-35054867 | MS.gene90604:intron | 40.0% |
| !! | ATTCGGTTTGTTGAGTGGTT+TGG | - | chr5.1:35055941-35055960 | MS.gene90604:intron | 40.0% |
| !! | GAACAAGAAAGCACCTCATT+CGG | - | chr5.1:35055924-35055943 | MS.gene90604:intron | 40.0% |
| !! | GGAATTGATGTTGATGGTGT+TGG | - | chr5.1:35054176-35054195 | MS.gene90604:intron | 40.0% |
| !! | GTATTGGTTCTTCAAAGTCC+AGG | - | chr5.1:35054738-35054757 | MS.gene90604:intron | 40.0% |
| !! | GTTTGTTGAGTGGTTTGGTT+TGG | - | chr5.1:35055946-35055965 | MS.gene90604:intron | 40.0% |
| !!! | CTTTTTTGCCTCTTCGAAAC+AGG | + | chr5.1:35054311-35054330 | None:intergenic | 40.0% |
| AAAACGTGAACAGTGGGAAG+AGG | - | chr5.1:35054460-35054479 | MS.gene90604:intron | 45.0% | |
| AAACTGCAGATGGTAACTGC+AGG | + | chr5.1:35056010-35056029 | None:intergenic | 45.0% | |
| AAGCTTCTGCTTCTAACGTG+CGG | - | chr5.1:35054336-35054355 | MS.gene90604:CDS | 45.0% | |
| AAGTCTTAGACCATCGCCAA+AGG | - | chr5.1:35057452-35057471 | MS.gene90604:CDS | 45.0% | |
| ACCACTCAACAAACCGAATG+AGG | + | chr5.1:35055940-35055959 | None:intergenic | 45.0% | |
| AGTATATCCCCTCACTTCAG+AGG | - | chr5.1:35057177-35057196 | MS.gene90604:CDS | 45.0% | |
| CGTGGCTTAGGAGTAAATGT+GGG | - | chr5.1:35057426-35057445 | MS.gene90604:CDS | 45.0% | |
| CTGTGGAAACTTTCCAACAG+AGG | + | chr5.1:35056067-35056086 | None:intergenic | 45.0% | |
| GAACACGAAAGATGAACTGC+GGG | - | chr5.1:35057341-35057360 | MS.gene90604:CDS | 45.0% | |
| GAATGCATCCAAAACTGGTC+AGG | - | chr5.1:35053944-35053963 | MS.gene90604:CDS | 45.0% | |
| GCCCAAACTGTGGAAATAGT+TGG | - | chr5.1:35056363-35056382 | MS.gene90604:CDS | 45.0% | |
| GCGAATACCCTCGTATCTAT+TGG | - | chr5.1:35055707-35055726 | MS.gene90604:intron | 45.0% | |
| GCGATGCCTCTTCAAACAAA+AGG | - | chr5.1:35054210-35054229 | MS.gene90604:intron | 45.0% | |
| GGGAAGAATGCATCCAAAAC+TGG | - | chr5.1:35053939-35053958 | MS.gene90604:CDS | 45.0% | |
| GGTGAGGATGATATTCGGAA+TGG | - | chr5.1:35054647-35054666 | MS.gene90604:intron | 45.0% | |
| GTGGCTTAGGAGTAAATGTG+GGG | - | chr5.1:35057427-35057446 | MS.gene90604:CDS | 45.0% | |
| GTGTCTCTCTCACTTCTTCA+AGG | + | chr5.1:35057023-35057042 | None:intergenic | 45.0% | |
| GTTAGCAGTAAGCACTTGCA+TGG | + | chr5.1:35056821-35056840 | None:intergenic | 45.0% | |
| TCAATCTTCCTTCACTGGTG+AGG | - | chr5.1:35054631-35054650 | MS.gene90604:intron | 45.0% | |
| TCAGCCTCGAACATGTTCTT+CGG | - | chr5.1:35053917-35053936 | MS.gene90604:CDS | 45.0% | |
| TCGTGGCTTAGGAGTAAATG+TGG | - | chr5.1:35057425-35057444 | MS.gene90604:CDS | 45.0% | |
| TCTATCTTTACTTGGCCCAC+TGG | + | chr5.1:35054045-35054064 | None:intergenic | 45.0% | |
| TGGCTTAGGAGTAAATGTGG+GGG | - | chr5.1:35057428-35057447 | MS.gene90604:CDS | 45.0% | |
| TGTCCGTCATGTGCATTCAA+TGG | + | chr5.1:35054971-35054990 | None:intergenic | 45.0% | |
| ! | AGGTCTGAAAAGCATGGGAA+AGG | - | chr5.1:35054575-35054594 | MS.gene90604:intron | 45.0% |
| ! | AGTGATGATGTGGATCAGTC+TGG | - | chr5.1:35054155-35054174 | MS.gene90604:intron | 45.0% |
| ! | ATAGAGTGAACCATGACGGA+AGG | - | chr5.1:35056481-35056500 | MS.gene90604:CDS | 45.0% |
| ! | GATGATGATGACGACGATGA+TGG | - | chr5.1:35054131-35054150 | MS.gene90604:intron | 45.0% |
| !! | ACCTCATTCGGTTTGTTGAG+TGG | - | chr5.1:35055936-35055955 | MS.gene90604:intron | 45.0% |
| !! | ATCTAGCTCCTCTGAAGTGA+GGG | + | chr5.1:35057188-35057207 | None:intergenic | 45.0% |
| !! | CGATGATGGAAGTGATGATG+TGG | - | chr5.1:35054145-35054164 | MS.gene90604:intron | 45.0% |
| !! | TCTTTCAGAGGTGCTCAACA+AGG | + | chr5.1:35056431-35056450 | None:intergenic | 45.0% |
| !! | TGTTGATGGTGTTGGAGAGT+TGG | - | chr5.1:35054184-35054203 | MS.gene90604:intron | 45.0% |
| !! | TTTGGGCCATACTGACTTGT+AGG | + | chr5.1:35056350-35056369 | None:intergenic | 45.0% |
| !!! | ACAGTTTTTTGACTTGGGGC+AGG | + | chr5.1:35054702-35054721 | None:intergenic | 45.0% |
| !!! | CAGTTTTTTGACTTGGGGCA+GGG | + | chr5.1:35054701-35054720 | None:intergenic | 45.0% |
| !!! | AATTTTAATAAATGATAAAA+TGG | - | chr5.1:35056598-35056617 | MS.gene90604:CDS | 5.0% |
| AACATAGGATGGCCAGTCTG+AGG | - | chr5.1:35056393-35056412 | MS.gene90604:CDS | 50.0% | |
| AGATTTCCACGCGGAACTTG+AGG | + | chr5.1:35054246-35054265 | None:intergenic | 50.0% | |
| AGCCTCGAACATGTTCTTCG+GGG | - | chr5.1:35053919-35053938 | MS.gene90604:CDS | 50.0% | |
| AGTCAGTATGGCCCAAACTG+TGG | - | chr5.1:35056353-35056372 | MS.gene90604:CDS | 50.0% | |
| CAAAACTGGTCAGGCGAAAG+GGG | - | chr5.1:35053953-35053972 | MS.gene90604:CDS | 50.0% | |
| CAGCCTCGAACATGTTCTTC+GGG | - | chr5.1:35053918-35053937 | MS.gene90604:CDS | 50.0% | |
| CATGTCATGTGCACCTTGGT+TGG | + | chr5.1:35054927-35054946 | None:intergenic | 50.0% | |
| CCAAAACTGGTCAGGCGAAA+GGG | - | chr5.1:35053952-35053971 | MS.gene90604:CDS | 50.0% | |
| CTTGCATGTCATGTGCACCT+TGG | + | chr5.1:35054931-35054950 | None:intergenic | 50.0% | |
| GATTTCCACGCGGAACTTGA+GGG | + | chr5.1:35054245-35054264 | None:intergenic | 50.0% | |
| GTAGGCTCTCCATATCCTAG+AGG | - | chr5.1:35055973-35055992 | MS.gene90604:intron | 50.0% | |
| GTCACTATCTCCTTCCGTCA+TGG | + | chr5.1:35056494-35056513 | None:intergenic | 50.0% | |
| GTCATCACCCAGTTCATTCC+TGG | + | chr5.1:35054759-35054778 | None:intergenic | 50.0% | |
| TCCAAAACTGGTCAGGCGAA+AGG | - | chr5.1:35053951-35053970 | MS.gene90604:CDS | 50.0% | |
| TTCCCCGAAGAACATGTTCG+AGG | + | chr5.1:35053924-35053943 | None:intergenic | 50.0% | |
| ! | AGAGTTTTCAGAGTTGGGGC+AGG | + | chr5.1:35054828-35054847 | None:intergenic | 50.0% |
| ! | GGATGCCATTTCCTCTTCCA+TGG | + | chr5.1:35055200-35055219 | None:intergenic | 50.0% |
| ! | GGGGGATAGCGATTTAGAAC+AGG | - | chr5.1:35056295-35056314 | MS.gene90604:CDS | 50.0% |
| ! | TCAGACTGGCCATCCTATGT+TGG | + | chr5.1:35056394-35056413 | None:intergenic | 50.0% |
| !! | CACACGGCCCTTTTTCATTG+CGG | + | chr5.1:35054489-35054508 | None:intergenic | 50.0% |
| !! | GATCTAGCTCCTCTGAAGTG+AGG | + | chr5.1:35057189-35057208 | None:intergenic | 50.0% |
| !! | GTGGTTTGGTTTGGGAGAGT+AGG | - | chr5.1:35055955-35055974 | MS.gene90604:intron | 50.0% |
| !! | TCTAGCTCCTCTGAAGTGAG+GGG | + | chr5.1:35057187-35057206 | None:intergenic | 50.0% |
| !!! | CGAAGGTGCTGGAGATGTTT+TGG | - | chr5.1:35056191-35056210 | MS.gene90604:CDS | 50.0% |
| AGGCTGAAGCCCATTGCAGT+GGG | + | chr5.1:35056575-35056594 | None:intergenic | 55.0% | |
| GATATGACCTCGCTGCTTCG+TGG | - | chr5.1:35057408-35057427 | MS.gene90604:CDS | 55.0% | |
| GGCTGAGAATAGCCGATTGC+TGG | - | chr5.1:35056972-35056991 | MS.gene90604:CDS | 55.0% | |
| TAGGCTGAAGCCCATTGCAG+TGG | + | chr5.1:35056576-35056595 | None:intergenic | 55.0% | |
| ! | CCCTTTCGCCTGACCAGTTT+TGG | + | chr5.1:35053955-35053974 | None:intergenic | 55.0% |
| ACCTCGCTGCTTCGTGGCTT+AGG | - | chr5.1:35057414-35057433 | MS.gene90604:CDS | 60.0% | |
| CTATGCCCTCAAGTTCCGCG+TGG | - | chr5.1:35054237-35054256 | MS.gene90604:intron | 60.0% | |
| TCCTAAGCCACGAAGCAGCG+AGG | + | chr5.1:35057418-35057437 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 35053885 | 35057476 | 35053885 | ID=MS.gene90604 |
| chr5.1 | mRNA | 35053885 | 35057476 | 35053885 | ID=MS.gene90604.t1;Parent=MS.gene90604 |
| chr5.1 | exon | 35056118 | 35057476 | 35056118 | ID=MS.gene90604.t1.exon1;Parent=MS.gene90604.t1 |
| chr5.1 | CDS | 35056118 | 35057476 | 35056118 | ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1 |
| chr5.1 | exon | 35054311 | 35054424 | 35054311 | ID=MS.gene90604.t1.exon2;Parent=MS.gene90604.t1 |
| chr5.1 | CDS | 35054311 | 35054424 | 35054311 | ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1 |
| chr5.1 | exon | 35053885 | 35054034 | 35053885 | ID=MS.gene90604.t1.exon3;Parent=MS.gene90604.t1 |
| chr5.1 | CDS | 35053885 | 35054034 | 35053885 | ID=cds.MS.gene90604.t1;Parent=MS.gene90604.t1 |
| Gene Sequence |
| Protein sequence |
