Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32863.t1 | XP_013461801.1 | 92.9 | 397 | 28 | 0 | 1 | 397 | 1 | 397 | 2.80E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32863.t1 | Q9SY57 | 51.7 | 391 | 178 | 4 | 8 | 390 | 14 | 401 | 2.0e-105 | 384.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32863.t1 | A0A072V2F7 | 92.9 | 397 | 28 | 0 | 1 | 397 | 1 | 397 | 2.0e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene32863 | 0.82325 | 1.53E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene32863 | 0.820574 | 6.38E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene32863 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene32863 | 0.801978 | 6.97E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene32863 | -0.820631 | 6.20E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene32863 | 0.833721 | 4.53E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene32863 | 0.819118 | 1.37E-52 | -1.69E-46 |
| MS.gene050361 | MS.gene32863 | 0.808495 | 3.01E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene32863 | 0.804995 | 1.65E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene32863 | -0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene32863 | -0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene32863 | 0.863578 | 2.25E-64 | -1.69E-46 |
| MS.gene050737 | MS.gene32863 | 0.813884 | 2.04E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene32863 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene32863 | 0.844703 | 6.41E-59 | -1.69E-46 |
| MS.gene050763 | MS.gene32863 | 0.844151 | 9.03E-59 | -1.69E-46 |
| MS.gene050826 | MS.gene32863 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene050941 | MS.gene32863 | 0.852722 | 3.83E-61 | -1.69E-46 |
| MS.gene051122 | MS.gene32863 | 0.825538 | 4.44E-54 | -1.69E-46 |
| MS.gene051184 | MS.gene32863 | 0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene32863 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene32863 | 0.825969 | 3.51E-54 | -1.69E-46 |
| MS.gene051831 | MS.gene32863 | 0.812937 | 3.30E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene32863 | 0.802751 | 4.84E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene32863 | 0.814289 | 1.66E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene32863 | 0.840806 | 6.97E-58 | -1.69E-46 |
| MS.gene052675 | MS.gene32863 | 0.835317 | 1.80E-56 | -1.69E-46 |
| MS.gene052677 | MS.gene32863 | 0.841079 | 5.91E-58 | -1.69E-46 |
| MS.gene052994 | MS.gene32863 | 0.813914 | 2.01E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene32863 | 0.837796 | 4.21E-57 | -1.69E-46 |
| MS.gene054379 | MS.gene32863 | 0.830505 | 2.83E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene32863 | 0.825773 | 3.91E-54 | -1.69E-46 |
| MS.gene054823 | MS.gene32863 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene32863 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene32863 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene32863 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene055314 | MS.gene32863 | 0.803831 | 2.89E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene32863 | 0.822741 | 2.01E-53 | -1.69E-46 |
| MS.gene055505 | MS.gene32863 | 0.801496 | 8.76E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene32863 | 0.821985 | 3.02E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene32863 | 0.833205 | 6.10E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene32863 | 0.832831 | 7.55E-56 | -1.69E-46 |
| MS.gene056045 | MS.gene32863 | 0.820801 | 5.66E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene32863 | 0.823958 | 1.05E-53 | -1.69E-46 |
| MS.gene056464 | MS.gene32863 | -0.818221 | 2.20E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene32863 | 0.819794 | 9.63E-53 | -1.69E-46 |
| MS.gene056779 | MS.gene32863 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene32863 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene32863 | 0.803984 | 2.69E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene32863 | 0.82724 | 1.75E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene32863 | 0.844655 | 6.61E-59 | -1.69E-46 |
| MS.gene058081 | MS.gene32863 | 0.838384 | 2.97E-57 | -1.69E-46 |
| MS.gene058146 | MS.gene32863 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene058223 | MS.gene32863 | -0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene32863 | 0.850573 | 1.56E-60 | -1.69E-46 |
| MS.gene058638 | MS.gene32863 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene32863 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene32863 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene32863 | 0.820639 | 6.17E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene32863 | 0.825657 | 4.16E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene32863 | 0.806386 | 8.44E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene32863 | 0.809942 | 1.47E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene32863 | 0.841122 | 5.76E-58 | -1.69E-46 |
| MS.gene060259 | MS.gene32863 | 0.810901 | 9.15E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene32863 | 0.844464 | 7.44E-59 | -1.69E-46 |
| MS.gene060400 | MS.gene32863 | 0.805235 | 1.47E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene32863 | 0.838597 | 2.62E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene32863 | 0.816325 | 5.86E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene32863 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene32863 | 0.806958 | 6.39E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene32863 | 0.855509 | 6.02E-62 | -1.69E-46 |
| MS.gene060850 | MS.gene32863 | 0.864586 | 1.09E-64 | -1.69E-46 |
| MS.gene060851 | MS.gene32863 | 0.872769 | 2.47E-67 | -1.69E-46 |
| MS.gene060852 | MS.gene32863 | 0.870825 | 1.09E-66 | -1.69E-46 |
| MS.gene060869 | MS.gene32863 | 0.828912 | 6.91E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene32863 | 0.844894 | 5.70E-59 | -1.69E-46 |
| MS.gene060932 | MS.gene32863 | 0.848222 | 7.03E-60 | -1.69E-46 |
| MS.gene060998 | MS.gene32863 | 0.818624 | 1.78E-52 | -1.69E-46 |
| MS.gene06121 | MS.gene32863 | 0.848662 | 5.31E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32863.t1 | MTR_3g103320 | 96.725 | 397 | 13 | 0 | 1 | 397 | 1 | 397 | 0.0 | 785 |
| MS.gene32863.t1 | MTR_5g015150 | 43.735 | 423 | 202 | 7 | 1 | 397 | 1 | 413 | 1.62e-116 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32863.t1 | AT1G10150 | 51.531 | 392 | 179 | 4 | 7 | 390 | 13 | 401 | 6.13e-138 | 400 |
| MS.gene32863.t1 | AT1G59510 | 46.316 | 380 | 176 | 5 | 9 | 388 | 15 | 366 | 2.57e-118 | 349 |
| MS.gene32863.t1 | AT3G49790 | 41.622 | 370 | 175 | 6 | 5 | 373 | 12 | 341 | 3.12e-91 | 279 |
Find 80 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTATATTTACATATTT+TGG | 0.007902 | 3.1:+81803345 | MS.gene32863:CDS |
| GTTGATGGAGTTGGGGATTC+TGG | 0.036210 | 3.1:+81803085 | MS.gene32863:CDS |
| TTCCTCGGACATGGCAATTT+TGG | 0.098120 | 3.1:-81802474 | None:intergenic |
| CGAAAAGGTGAAGGGAATTT+TGG | 0.152646 | 3.1:+81802910 | MS.gene32863:CDS |
| TCGAAATCTGATGGTATTTC+TGG | 0.188403 | 3.1:+81802731 | MS.gene32863:CDS |
| GGATAATTGTTTGAAACTAT+TGG | 0.205140 | 3.1:-81802453 | None:intergenic |
| TTGAGTTCACCTAGGGAAAA+TGG | 0.207384 | 3.1:+81803013 | MS.gene32863:CDS |
| CTCAAATCAGATTTACCTTT+TGG | 0.212767 | 3.1:-81802995 | None:intergenic |
| TTTGAAAAGGGGTGTTAATA+AGG | 0.254480 | 3.1:+81803240 | MS.gene32863:CDS |
| GAAAAGTGTGGGAAGGTTAT+AGG | 0.268010 | 3.1:+81802776 | MS.gene32863:CDS |
| GATAATTGTTTGAAACTATT+GGG | 0.292814 | 3.1:-81802452 | None:intergenic |
| AAAAGTGTGGGAAGGTTATA+GGG | 0.303415 | 3.1:+81802777 | MS.gene32863:CDS |
| TTGATGGAGTTGGGGATTCT+GGG | 0.306483 | 3.1:+81803086 | MS.gene32863:CDS |
| TGAAACGGTTTCTGCGGAAC+TGG | 0.346962 | 3.1:-81802378 | None:intergenic |
| GGCTGGAACTGGGTTTGTTT+CGG | 0.350057 | 3.1:+81802637 | MS.gene32863:CDS |
| GGATTCTGGGTGGCTTGAAC+AGG | 0.351079 | 3.1:+81803099 | MS.gene32863:CDS |
| CTTATGTCTGAGGCTGGAAC+TGG | 0.363984 | 3.1:+81802626 | MS.gene32863:CDS |
| AAGTTGGAAAATGTTGATTC+GGG | 0.380669 | 3.1:+81802707 | MS.gene32863:CDS |
| GAAGTTGGAAAATGTTGATT+CGG | 0.393462 | 3.1:+81802706 | MS.gene32863:CDS |
| GAGAAATTTGTTTAAATCGT+TGG | 0.399408 | 3.1:-81802408 | None:intergenic |
| CATTTGTGGAGTTTATGTTA+TGG | 0.403207 | 3.1:+81803203 | MS.gene32863:CDS |
| TTTGGTTAAAACATCTCATC+AGG | 0.407964 | 3.1:+81802961 | MS.gene32863:CDS |
| AGAATCCTAAAAGCGCGATT+AGG | 0.413573 | 3.1:-81802250 | None:intergenic |
| AATTTCTGAAGATAAGCTTC+CGG | 0.414427 | 3.1:-81803046 | None:intergenic |
| AGCTTTATAAACACCGTAAC+CGG | 0.435942 | 3.1:-81802273 | None:intergenic |
| TATCTTCAGAAATTCAGAAA+TGG | 0.439497 | 3.1:+81803055 | MS.gene32863:CDS |
| CGAAACTGTGAGGTCATTTG+TGG | 0.447805 | 3.1:+81803189 | MS.gene32863:CDS |
| GAAGCTCTGTTGATGGAGTT+GGG | 0.450576 | 3.1:+81803077 | MS.gene32863:CDS |
| AATATCAGAAGGTTTGAAAA+GGG | 0.454639 | 3.1:+81803228 | MS.gene32863:CDS |
| ATGCAAGTTGTTAGATATGT+AGG | 0.456238 | 3.1:+81803289 | MS.gene32863:CDS |
| AACTGGGTTTGTTTCGGTTG+TGG | 0.457163 | 3.1:+81802643 | MS.gene32863:CDS |
| AGCACAAACCTCTGGTTAGC+TGG | 0.460341 | 3.1:-81803142 | None:intergenic |
| AACGAAAGCTTTGAGAAGCT+TGG | 0.461504 | 3.1:-81802336 | None:intergenic |
| AGGTTTGTGCTTGATGTCAC+GGG | 0.461808 | 3.1:+81803154 | MS.gene32863:CDS |
| GGAAAATGGGCGTTTGAAAC+CGG | 0.463327 | 3.1:+81803027 | MS.gene32863:CDS |
| AGAAATGGAAGCTCTGTTGA+TGG | 0.465656 | 3.1:+81803070 | MS.gene32863:CDS |
| TAATGGTGCTGTTGAGACTT+TGG | 0.466719 | 3.1:+81802943 | MS.gene32863:CDS |
| TGAGTTCACCTAGGGAAAAT+GGG | 0.476331 | 3.1:+81803014 | MS.gene32863:CDS |
| GAATATCAGAAGGTTTGAAA+AGG | 0.486731 | 3.1:+81803227 | MS.gene32863:CDS |
| GGAAGCTCTGTTGATGGAGT+TGG | 0.496439 | 3.1:+81803076 | MS.gene32863:CDS |
| GGTTTCAAAGTCTTTAACAC+AGG | 0.507988 | 3.1:+81802517 | MS.gene32863:CDS |
| ATCGTTGGAAACGATTGAAA+CGG | 0.512284 | 3.1:-81802393 | None:intergenic |
| AATTGTTATCGAAAATTCCT+CGG | 0.513477 | 3.1:-81802489 | None:intergenic |
| GAGGTTTGTGCTTGATGTCA+CGG | 0.533268 | 3.1:+81803153 | MS.gene32863:CDS |
| TATCGAAAATTCCTCGGACA+TGG | 0.538704 | 3.1:-81802483 | None:intergenic |
| GATAAGCTTATGTCTGAGGC+TGG | 0.543039 | 3.1:+81802620 | MS.gene32863:CDS |
| GAATCCAAAACACCACGAAA+AGG | 0.544499 | 3.1:+81802895 | MS.gene32863:CDS |
| AACGATTGAAACGGTTTCTG+CGG | 0.546930 | 3.1:-81802384 | None:intergenic |
| ATCTGATTTGAGTTCACCTA+GGG | 0.546953 | 3.1:+81803006 | MS.gene32863:CDS |
| CTTTGAGAAGCTTGGTGAAG+CGG | 0.547949 | 3.1:-81802328 | None:intergenic |
| GGGTGGTAGTAGGATTCTAG+TGG | 0.548130 | 3.1:+81803366 | MS.gene32863:CDS |
| TGACATCAAGCACAAACCTC+TGG | 0.548454 | 3.1:-81803150 | None:intergenic |
| AAAGTGTGGGAAGGTTATAG+GGG | 0.564724 | 3.1:+81802778 | MS.gene32863:CDS |
| ATGGAGTTGGGGATTCTGGG+TGG | 0.564951 | 3.1:+81803089 | MS.gene32863:CDS |
| GTAAATATAAAGCAAGACAC+AGG | 0.567041 | 3.1:-81803336 | None:intergenic |
| GGGTTTGTTTCGGTTGTGGT+TGG | 0.582510 | 3.1:+81802647 | MS.gene32863:CDS |
| GTTTCAAAGTCTTTAACACA+GGG | 0.590487 | 3.1:+81802518 | MS.gene32863:CDS |
| GTTGGATAAGCTTATGTCTG+AGG | 0.594329 | 3.1:+81802616 | MS.gene32863:CDS |
| TTATGTCTGAGGCTGGAACT+GGG | 0.597190 | 3.1:+81802627 | MS.gene32863:CDS |
| TGAGAAGCTTGGTGAAGCGG+TGG | 0.598441 | 3.1:-81802325 | None:intergenic |
| GTGATTTGTGATGAAAAGTG+TGG | 0.602122 | 3.1:+81802764 | MS.gene32863:CDS |
| GATTCGGGGTCGAAATCTGA+TGG | 0.609922 | 3.1:+81802722 | MS.gene32863:CDS |
| ATATCAGAAGGTTTGAAAAG+GGG | 0.613283 | 3.1:+81803229 | MS.gene32863:CDS |
| CATGACGATGTTGTAGACAA+AGG | 0.616899 | 3.1:+81803265 | MS.gene32863:CDS |
| AAAACACCACGAAAAGGTGA+AGG | 0.616934 | 3.1:+81802901 | MS.gene32863:CDS |
| ATCCAAAATTGCCATGTCCG+AGG | 0.618224 | 3.1:+81802472 | MS.gene32863:CDS |
| ATGTTATGGAGAATATCAGA+AGG | 0.618821 | 3.1:+81803217 | MS.gene32863:CDS |
| AATCTGATTTGAGTTCACCT+AGG | 0.620883 | 3.1:+81803005 | MS.gene32863:CDS |
| AAAACCCTTGGAAATTGGTG+CGG | 0.627520 | 3.1:+81802568 | MS.gene32863:CDS |
| AAGCTCTGTTGATGGAGTTG+GGG | 0.629477 | 3.1:+81803078 | MS.gene32863:CDS |
| TTTCTGTGCCAGCTAACCAG+AGG | 0.634765 | 3.1:+81803134 | MS.gene32863:CDS |
| AAACACCACGAAAAGGTGAA+GGG | 0.640062 | 3.1:+81802902 | MS.gene32863:CDS |
| TTGTGATGAAAAGTGTGGGA+AGG | 0.642371 | 3.1:+81802769 | MS.gene32863:CDS |
| TGTTTACGTGAGAAATTGAG+TGG | 0.648714 | 3.1:-81802212 | None:intergenic |
| TAAATATAAAGCAAGACACA+GGG | 0.668525 | 3.1:-81803335 | None:intergenic |
| TGATTTGTGATGAAAAGTGT+GGG | 0.672796 | 3.1:+81802765 | MS.gene32863:CDS |
| AGTTGGAAAATGTTGATTCG+GGG | 0.681446 | 3.1:+81802708 | MS.gene32863:CDS |
| ATATGTAGGAGCTAAGTCGT+CGG | 0.689384 | 3.1:+81803303 | MS.gene32863:CDS |
| GGTTTGTGCTTGATGTCACG+GGG | 0.712732 | 3.1:+81803155 | MS.gene32863:CDS |
| GAGTGACATTCGAAACTGTG+AGG | 0.724455 | 3.1:+81803179 | MS.gene32863:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTTTATATTTACATATTTT+GGG | + | chr3.1:81803346-81803365 | MS.gene32863:CDS | 15.0% |
| !!! | TGCTTTATATTTACATATTT+TGG | + | chr3.1:81803345-81803364 | MS.gene32863:CDS | 15.0% |
| !!! | AATTTTCGATAACAATTTCT+AGG | + | chr3.1:81802495-81802514 | MS.gene32863:CDS | 20.0% |
| !!! | ATTTTCGATAACAATTTCTA+GGG | + | chr3.1:81802496-81802515 | MS.gene32863:CDS | 20.0% |
| !!! | GATAATTGTTTGAAACTATT+GGG | - | chr3.1:81802455-81802474 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTTGATAAAACAA+TGG | + | chr3.1:81802835-81802854 | MS.gene32863:CDS | 20.0% |
| !!! | TTATATTTACATATTTTGGG+TGG | + | chr3.1:81803349-81803368 | MS.gene32863:CDS | 20.0% |
| ! | AATATCAGAAGGTTTGAAAA+GGG | + | chr3.1:81803228-81803247 | MS.gene32863:CDS | 25.0% |
| ! | AATTGTTATCGAAAATTCCT+CGG | - | chr3.1:81802492-81802511 | None:intergenic | 25.0% |
| ! | TAAATATAAAGCAAGACACA+GGG | - | chr3.1:81803338-81803357 | None:intergenic | 25.0% |
| ! | TATCTTCAGAAATTCAGAAA+TGG | + | chr3.1:81803055-81803074 | MS.gene32863:CDS | 25.0% |
| !! | GAGAAATTTGTTTAAATCGT+TGG | - | chr3.1:81802411-81802430 | None:intergenic | 25.0% |
| !! | GGATAATTGTTTGAAACTAT+TGG | - | chr3.1:81802456-81802475 | None:intergenic | 25.0% |
| !!! | AAAAATCGAATTTTTCGGAT+AGG | + | chr3.1:81802591-81802610 | MS.gene32863:CDS | 25.0% |
| !!! | AAAATCGAATTTTTCGGATA+GGG | + | chr3.1:81802592-81802611 | MS.gene32863:CDS | 25.0% |
| !!! | ATTTTGGTTTCTCTATGTAA+TGG | + | chr3.1:81802926-81802945 | MS.gene32863:CDS | 25.0% |
| ATATCAGAAGGTTTGAAAAG+GGG | + | chr3.1:81803229-81803248 | MS.gene32863:CDS | 30.0% | |
| ATGCAAGTTGTTAGATATGT+AGG | + | chr3.1:81803289-81803308 | MS.gene32863:CDS | 30.0% | |
| ATGTTATGGAGAATATCAGA+AGG | + | chr3.1:81803217-81803236 | MS.gene32863:CDS | 30.0% | |
| CATTTGTGGAGTTTATGTTA+TGG | + | chr3.1:81803203-81803222 | MS.gene32863:CDS | 30.0% | |
| GAATATCAGAAGGTTTGAAA+AGG | + | chr3.1:81803227-81803246 | MS.gene32863:CDS | 30.0% | |
| GTAAATATAAAGCAAGACAC+AGG | - | chr3.1:81803339-81803358 | None:intergenic | 30.0% | |
| GTTTCAAAGTCTTTAACACA+GGG | + | chr3.1:81802518-81802537 | MS.gene32863:CDS | 30.0% | |
| TCCAGCAAAAATTTCATCAT+AGG | - | chr3.1:81802870-81802889 | None:intergenic | 30.0% | |
| TTTGAAAAACCCTTGGAAAT+TGG | + | chr3.1:81802563-81802582 | MS.gene32863:CDS | 30.0% | |
| TTTGGTTAAAACATCTCATC+AGG | + | chr3.1:81802961-81802980 | MS.gene32863:CDS | 30.0% | |
| ! | AATTTCTGAAGATAAGCTTC+CGG | - | chr3.1:81803049-81803068 | None:intergenic | 30.0% |
| ! | ACCTATGATGAAATTTTTGC+TGG | + | chr3.1:81802866-81802885 | MS.gene32863:CDS | 30.0% |
| ! | CTCAAATCAGATTTACCTTT+TGG | - | chr3.1:81802998-81803017 | None:intergenic | 30.0% |
| ! | GAAGTTGGAAAATGTTGATT+CGG | + | chr3.1:81802706-81802725 | MS.gene32863:CDS | 30.0% |
| ! | TGATTTGTGATGAAAAGTGT+GGG | + | chr3.1:81802765-81802784 | MS.gene32863:CDS | 30.0% |
| ! | TGCGGAAAAATCGAATTTTT+CGG | + | chr3.1:81802586-81802605 | MS.gene32863:CDS | 30.0% |
| ! | TGGCGTTTTTGAACTAAATA+GGG | - | chr3.1:81802308-81802327 | None:intergenic | 30.0% |
| ! | TTTAACACAGGGAATTTTGA+TGG | + | chr3.1:81802529-81802548 | MS.gene32863:CDS | 30.0% |
| !! | AAGTTGGAAAATGTTGATTC+GGG | + | chr3.1:81802707-81802726 | MS.gene32863:CDS | 30.0% |
| !! | TTAACACAGGGAATTTTGAT+GGG | + | chr3.1:81802530-81802549 | MS.gene32863:CDS | 30.0% |
| !! | TTTGAAAAGGGGTGTTAATA+AGG | + | chr3.1:81803240-81803259 | MS.gene32863:CDS | 30.0% |
| !! | TTTTGCTAGGAATTTGGTTT+TGG | + | chr3.1:81802673-81802692 | MS.gene32863:CDS | 30.0% |
| !!! | TTTGCTAGGAATTTGGTTTT+GGG | + | chr3.1:81802674-81802693 | MS.gene32863:CDS | 30.0% |
| ATCGTTGGAAACGATTGAAA+CGG | - | chr3.1:81802396-81802415 | None:intergenic | 35.0% | |
| GGTTTCAAAGTCTTTAACAC+AGG | + | chr3.1:81802517-81802536 | MS.gene32863:CDS | 35.0% | |
| TCGAAATCTGATGGTATTTC+TGG | + | chr3.1:81802731-81802750 | MS.gene32863:CDS | 35.0% | |
| TGGTGAATTTGAAAAACCCT+TGG | + | chr3.1:81802556-81802575 | MS.gene32863:CDS | 35.0% | |
| TGTTTACGTGAGAAATTGAG+TGG | - | chr3.1:81802215-81802234 | None:intergenic | 35.0% | |
| ! | AAAAGTGTGGGAAGGTTATA+GGG | + | chr3.1:81802777-81802796 | MS.gene32863:CDS | 35.0% |
| ! | AATCTGATTTGAGTTCACCT+AGG | + | chr3.1:81803005-81803024 | MS.gene32863:CDS | 35.0% |
| ! | AGCTTTATAAACACCGTAAC+CGG | - | chr3.1:81802276-81802295 | None:intergenic | 35.0% |
| ! | ATCTGATTTGAGTTCACCTA+GGG | + | chr3.1:81803006-81803025 | MS.gene32863:CDS | 35.0% |
| ! | GTGATTTGTGATGAAAAGTG+TGG | + | chr3.1:81802764-81802783 | MS.gene32863:CDS | 35.0% |
| ! | GTGGCGTTTTTGAACTAAAT+AGG | - | chr3.1:81802309-81802328 | None:intergenic | 35.0% |
| ! | TGGAAGTTTTGCTAGGAATT+TGG | + | chr3.1:81802667-81802686 | MS.gene32863:CDS | 35.0% |
| !! | AGTTGGAAAATGTTGATTCG+GGG | + | chr3.1:81802708-81802727 | MS.gene32863:CDS | 35.0% |
| !! | CGATTAGGATAAGTCGTTTT+TGG | - | chr3.1:81802238-81802257 | None:intergenic | 35.0% |
| !! | TAACACAGGGAATTTTGATG+GGG | + | chr3.1:81802531-81802550 | MS.gene32863:CDS | 35.0% |
| !! | TACATATTTTGGGTGGTAGT+AGG | + | chr3.1:81803356-81803375 | MS.gene32863:CDS | 35.0% |
| !!! | CAGGTTTTGACTAATCCAAA+AGG | + | chr3.1:81802980-81802999 | MS.gene32863:CDS | 35.0% |
| AAAACACCACGAAAAGGTGA+AGG | + | chr3.1:81802901-81802920 | MS.gene32863:CDS | 40.0% | |
| AAAACCCTTGGAAATTGGTG+CGG | + | chr3.1:81802568-81802587 | MS.gene32863:CDS | 40.0% | |
| AAACACCACGAAAAGGTGAA+GGG | + | chr3.1:81802902-81802921 | MS.gene32863:CDS | 40.0% | |
| AAAGTGTGGGAAGGTTATAG+GGG | + | chr3.1:81802778-81802797 | MS.gene32863:CDS | 40.0% | |
| AACGATTGAAACGGTTTCTG+CGG | - | chr3.1:81802387-81802406 | None:intergenic | 40.0% | |
| AGAAATGGAAGCTCTGTTGA+TGG | + | chr3.1:81803070-81803089 | MS.gene32863:CDS | 40.0% | |
| ATATGTAGGAGCTAAGTCGT+CGG | + | chr3.1:81803303-81803322 | MS.gene32863:CDS | 40.0% | |
| CATGACGATGTTGTAGACAA+AGG | + | chr3.1:81803265-81803284 | MS.gene32863:CDS | 40.0% | |
| GAATCCAAAACACCACGAAA+AGG | + | chr3.1:81802895-81802914 | MS.gene32863:CDS | 40.0% | |
| GTTGGATAAGCTTATGTCTG+AGG | + | chr3.1:81802616-81802635 | MS.gene32863:CDS | 40.0% | |
| TATCGAAAATTCCTCGGACA+TGG | - | chr3.1:81802486-81802505 | None:intergenic | 40.0% | |
| TGAGTTCACCTAGGGAAAAT+GGG | + | chr3.1:81803014-81803033 | MS.gene32863:CDS | 40.0% | |
| TTGAGTTCACCTAGGGAAAA+TGG | + | chr3.1:81803013-81803032 | MS.gene32863:CDS | 40.0% | |
| ! | AAATTCCCTTCACCTTTTCG+TGG | - | chr3.1:81802910-81802929 | None:intergenic | 40.0% |
| ! | AGAATCCTAAAAGCGCGATT+AGG | - | chr3.1:81802253-81802272 | None:intergenic | 40.0% |
| ! | CGAAAAGGTGAAGGGAATTT+TGG | + | chr3.1:81802910-81802929 | MS.gene32863:CDS | 40.0% |
| ! | CTTATCCTAATCGCGCTTTT+AGG | + | chr3.1:81802245-81802264 | MS.gene32863:CDS | 40.0% |
| ! | GAAAAGTGTGGGAAGGTTAT+AGG | + | chr3.1:81802776-81802795 | MS.gene32863:CDS | 40.0% |
| ! | TTCACCTTTTCGTGGTGTTT+TGG | - | chr3.1:81802902-81802921 | None:intergenic | 40.0% |
| ! | TTGTGATGAAAAGTGTGGGA+AGG | + | chr3.1:81802769-81802788 | MS.gene32863:CDS | 40.0% |
| ! | TTGTGGTTGGAAGTTTTGCT+AGG | + | chr3.1:81802660-81802679 | MS.gene32863:CDS | 40.0% |
| ! | TTTTCCGCACCAATTTCCAA+GGG | - | chr3.1:81802575-81802594 | None:intergenic | 40.0% |
| ! | TTTTTCCGCACCAATTTCCA+AGG | - | chr3.1:81802576-81802595 | None:intergenic | 40.0% |
| !! | AACGAAAGCTTTGAGAAGCT+TGG | - | chr3.1:81802339-81802358 | None:intergenic | 40.0% |
| !! | GAATTTTTCGGATAGGGTGT+TGG | + | chr3.1:81802598-81802617 | MS.gene32863:CDS | 40.0% |
| !! | TAATGGTGCTGTTGAGACTT+TGG | + | chr3.1:81802943-81802962 | MS.gene32863:CDS | 40.0% |
| !! | TTTGGGTTTTCGTACGAAGT+TGG | + | chr3.1:81802691-81802710 | MS.gene32863:CDS | 40.0% |
| !!! | CTTTTAGGATTCTCCGGTTA+CGG | + | chr3.1:81802260-81802279 | MS.gene32863:CDS | 40.0% |
| AGGTTTGTGCTTGATGTCAC+GGG | + | chr3.1:81803154-81803173 | MS.gene32863:CDS | 45.0% | |
| ATCCAAAATTGCCATGTCCG+AGG | + | chr3.1:81802472-81802491 | MS.gene32863:CDS | 45.0% | |
| CGAAACTGTGAGGTCATTTG+TGG | + | chr3.1:81803189-81803208 | MS.gene32863:CDS | 45.0% | |
| GAGGTTTGTGCTTGATGTCA+CGG | + | chr3.1:81803153-81803172 | MS.gene32863:CDS | 45.0% | |
| GAGTGACATTCGAAACTGTG+AGG | + | chr3.1:81803179-81803198 | MS.gene32863:CDS | 45.0% | |
| TGACATCAAGCACAAACCTC+TGG | - | chr3.1:81803153-81803172 | None:intergenic | 45.0% | |
| TTGATGGAGTTGGGGATTCT+GGG | + | chr3.1:81803086-81803105 | MS.gene32863:CDS | 45.0% | |
| ! | AACTGGGTTTGTTTCGGTTG+TGG | + | chr3.1:81802643-81802662 | MS.gene32863:CDS | 45.0% |
| ! | AAGCTCTGTTGATGGAGTTG+GGG | + | chr3.1:81803078-81803097 | MS.gene32863:CDS | 45.0% |
| ! | CTTTGAGAAGCTTGGTGAAG+CGG | - | chr3.1:81802331-81802350 | None:intergenic | 45.0% |
| ! | GAAGCTCTGTTGATGGAGTT+GGG | + | chr3.1:81803077-81803096 | MS.gene32863:CDS | 45.0% |
| ! | GATAAGCTTATGTCTGAGGC+TGG | + | chr3.1:81802620-81802639 | MS.gene32863:CDS | 45.0% |
| ! | GGAAAATGGGCGTTTGAAAC+CGG | + | chr3.1:81803027-81803046 | MS.gene32863:CDS | 45.0% |
| ! | GGATTGTGTGCAGACTTTTG+TGG | + | chr3.1:81802799-81802818 | MS.gene32863:CDS | 45.0% |
| ! | TTATGTCTGAGGCTGGAACT+GGG | + | chr3.1:81802627-81802646 | MS.gene32863:CDS | 45.0% |
| ! | TTCAAACGCCCATTTTCCCT+AGG | - | chr3.1:81803025-81803044 | None:intergenic | 45.0% |
| ! | TTCCTCGGACATGGCAATTT+TGG | - | chr3.1:81802477-81802496 | None:intergenic | 45.0% |
| !! | CAGGGAATTTTGATGGGGTA+TGG | + | chr3.1:81802536-81802555 | MS.gene32863:CDS | 45.0% |
| !!! | ATCGCGCTTTTAGGATTCTC+CGG | + | chr3.1:81802254-81802273 | MS.gene32863:CDS | 45.0% |
| AGCACAAACCTCTGGTTAGC+TGG | - | chr3.1:81803145-81803164 | None:intergenic | 50.0% | |
| GATTCGGGGTCGAAATCTGA+TGG | + | chr3.1:81802722-81802741 | MS.gene32863:CDS | 50.0% | |
| GGGTGGTAGTAGGATTCTAG+TGG | + | chr3.1:81803366-81803385 | MS.gene32863:CDS | 50.0% | |
| GGTTTGTGCTTGATGTCACG+GGG | + | chr3.1:81803155-81803174 | MS.gene32863:CDS | 50.0% | |
| TGAAACGGTTTCTGCGGAAC+TGG | - | chr3.1:81802381-81802400 | None:intergenic | 50.0% | |
| TTTCTGTGCCAGCTAACCAG+AGG | + | chr3.1:81803134-81803153 | MS.gene32863:CDS | 50.0% | |
| ! | CTTATGTCTGAGGCTGGAAC+TGG | + | chr3.1:81802626-81802645 | MS.gene32863:CDS | 50.0% |
| ! | GGAAGCTCTGTTGATGGAGT+TGG | + | chr3.1:81803076-81803095 | MS.gene32863:CDS | 50.0% |
| ! | GGCTGGAACTGGGTTTGTTT+CGG | + | chr3.1:81802637-81802656 | MS.gene32863:CDS | 50.0% |
| ! | GGGTTTGTTTCGGTTGTGGT+TGG | + | chr3.1:81802647-81802666 | MS.gene32863:CDS | 50.0% |
| ! | GTTGATGGAGTTGGGGATTC+TGG | + | chr3.1:81803085-81803104 | MS.gene32863:CDS | 50.0% |
| ATGGAGTTGGGGATTCTGGG+TGG | + | chr3.1:81803089-81803108 | MS.gene32863:CDS | 55.0% | |
| GGATTCTGGGTGGCTTGAAC+AGG | + | chr3.1:81803099-81803118 | MS.gene32863:CDS | 55.0% | |
| ! | TGAGAAGCTTGGTGAAGCGG+TGG | - | chr3.1:81802328-81802347 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81802203 | 81803396 | 81802203 | ID=MS.gene32863 |
| chr3.1 | mRNA | 81802203 | 81803396 | 81802203 | ID=MS.gene32863.t1;Parent=MS.gene32863 |
| chr3.1 | exon | 81802203 | 81803396 | 81802203 | ID=MS.gene32863.t1.exon1;Parent=MS.gene32863.t1 |
| chr3.1 | CDS | 81802203 | 81803396 | 81802203 | ID=cds.MS.gene32863.t1;Parent=MS.gene32863.t1 |
| Gene Sequence |
| Protein sequence |
