AlfalfaGEDB | MS.gene95339

M. sativa cultivar XinJiangDaYe / MS.gene95339

KEGG: -
GO: -
PFAM: PF14223.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95339.t1	PNX91497.1	92.6	202	15	0	1	202	1	202	4.50E-97	364

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95339.t1	P10978	34.6	185	117	3	7	188	5	188	5.1e-25	115.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95339.t1	A0A2K3ML10	92.6	202	15	0	1	202	1	202	3.2e-97	364.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene95339	0.81073	9.97E-51	-1.69E-46
MS.gene049283	MS.gene95339	0.827243	1.74E-54	-1.69E-46
MS.gene049368	MS.gene95339	0.808743	2.67E-50	-1.69E-46
MS.gene049419	MS.gene95339	-0.803355	3.63E-49	-1.69E-46
MS.gene049801	MS.gene95339	0.833503	5.14E-56	-1.69E-46
MS.gene049983	MS.gene95339	0.827606	1.43E-54	-1.69E-46
MS.gene050084	MS.gene95339	0.835676	1.46E-56	-1.69E-46
MS.gene050085	MS.gene95339	0.844629	6.72E-59	-1.69E-46
MS.gene050213	MS.gene95339	0.809683	1.68E-50	-1.69E-46
MS.gene050359	MS.gene95339	0.832368	9.84E-56	-1.69E-46
MS.gene050361	MS.gene95339	0.850966	1.21E-60	-1.69E-46
MS.gene050646	MS.gene95339	0.842813	2.06E-58	-1.69E-46
MS.gene050654	MS.gene95339	0.85964	3.60E-63	-1.69E-46
MS.gene050737	MS.gene95339	0.811072	8.41E-51	-1.69E-46
MS.gene050826	MS.gene95339	0.802823	4.67E-49	-1.69E-46
MS.gene050941	MS.gene95339	0.844576	6.94E-59	-1.69E-46
MS.gene051122	MS.gene95339	0.804749	1.86E-49	-1.69E-46
MS.gene051184	MS.gene95339	0.802266	6.09E-49	-1.69E-46
MS.gene051209	MS.gene95339	0.817878	2.62E-52	-1.69E-46
MS.gene051275	MS.gene95339	0.85575	5.12E-62	-1.69E-46
MS.gene051343	MS.gene95339	0.824518	7.73E-54	-1.69E-46
MS.gene051831	MS.gene95339	0.817176	3.78E-52	-1.69E-46
MS.gene051856	MS.gene95339	0.827155	1.83E-54	-1.69E-46
MS.gene05216	MS.gene95339	0.807404	5.14E-50	-1.69E-46
MS.gene052242	MS.gene95339	-0.825839	3.77E-54	-1.69E-46
MS.gene052307	MS.gene95339	0.817047	4.04E-52	-1.69E-46
MS.gene052609	MS.gene95339	0.836117	1.13E-56	-1.69E-46
MS.gene052674	MS.gene95339	0.825353	4.91E-54	-1.69E-46
MS.gene052675	MS.gene95339	0.825851	3.74E-54	-1.69E-46
MS.gene052677	MS.gene95339	0.825726	4.00E-54	-1.69E-46
MS.gene052735	MS.gene95339	0.802562	5.29E-49	-1.69E-46
MS.gene052776	MS.gene95339	0.828166	1.05E-54	-1.69E-46
MS.gene052932	MS.gene95339	0.829267	5.66E-55	-1.69E-46
MS.gene052994	MS.gene95339	0.826709	2.34E-54	-1.69E-46
MS.gene053058	MS.gene95339	0.800359	1.50E-48	-1.69E-46
MS.gene05350	MS.gene95339	0.812347	4.44E-51	-1.69E-46
MS.gene053726	MS.gene95339	0.834311	3.23E-56	-1.69E-46
MS.gene054479	MS.gene95339	0.853184	2.83E-61	-1.69E-46
MS.gene054892	MS.gene95339	0.814253	1.69E-51	-1.69E-46
MS.gene054893	MS.gene95339	0.820641	6.16E-53	-1.69E-46
MS.gene055311	MS.gene95339	0.821504	3.90E-53	-1.69E-46
MS.gene055313	MS.gene95339	0.807091	5.99E-50	-1.69E-46
MS.gene055314	MS.gene95339	0.803441	3.48E-49	-1.69E-46
MS.gene055442	MS.gene95339	0.818869	1.56E-52	-1.69E-46
MS.gene055513	MS.gene95339	0.808411	3.14E-50	-1.69E-46
MS.gene055864	MS.gene95339	0.817281	3.58E-52	-1.69E-46
MS.gene055926	MS.gene95339	0.800041	1.74E-48	-1.69E-46
MS.gene056045	MS.gene95339	0.858143	1.01E-62	-1.69E-46
MS.gene05615	MS.gene95339	0.835975	1.23E-56	-1.69E-46
MS.gene056181	MS.gene95339	0.83848	2.80E-57	-1.69E-46
MS.gene056480	MS.gene95339	0.839031	2.02E-57	-1.69E-46
MS.gene056787	MS.gene95339	0.824208	9.14E-54	-1.69E-46
MS.gene056831	MS.gene95339	0.805661	1.20E-49	-1.69E-46
MS.gene056849	MS.gene95339	0.804806	1.81E-49	-1.69E-46
MS.gene057208	MS.gene95339	0.805879	1.08E-49	-1.69E-46
MS.gene057371	MS.gene95339	0.809557	1.78E-50	-1.69E-46
MS.gene057890	MS.gene95339	-0.805437	1.34E-49	-1.69E-46
MS.gene058081	MS.gene95339	0.85069	1.44E-60	-1.69E-46
MS.gene058223	MS.gene95339	-0.810384	1.18E-50	-1.69E-46
MS.gene058278	MS.gene95339	0.801171	1.02E-48	-1.69E-46
MS.gene058292	MS.gene95339	0.836732	7.87E-57	-1.69E-46
MS.gene058429	MS.gene95339	0.830979	2.16E-55	-1.69E-46
MS.gene058638	MS.gene95339	0.823268	1.52E-53	-1.69E-46
MS.gene058639	MS.gene95339	0.815976	7.01E-52	-1.69E-46
MS.gene058647	MS.gene95339	0.800425	1.45E-48	-1.69E-46
MS.gene059007	MS.gene95339	0.835701	1.44E-56	-1.69E-46
MS.gene059439	MS.gene95339	0.829568	4.79E-55	-1.69E-46
MS.gene06010	MS.gene95339	0.822532	2.25E-53	-1.69E-46
MS.gene060259	MS.gene95339	0.803699	3.08E-49	-1.69E-46
MS.gene060296	MS.gene95339	0.843913	1.05E-58	-1.69E-46
MS.gene060400	MS.gene95339	0.809105	2.23E-50	-1.69E-46
MS.gene060777	MS.gene95339	0.82194	3.09E-53	-1.69E-46
MS.gene060850	MS.gene95339	0.829019	6.50E-55	-1.69E-46
MS.gene060851	MS.gene95339	0.834237	3.37E-56	-1.69E-46
MS.gene060852	MS.gene95339	0.829785	4.24E-55	-1.69E-46
MS.gene060870	MS.gene95339	0.80131	9.56E-49	-1.69E-46
MS.gene060932	MS.gene95339	0.834689	2.59E-56	-1.69E-46
MS.gene060933	MS.gene95339	0.830471	2.88E-55	-1.69E-46
MS.gene060935	MS.gene95339	0.808429	3.11E-50	-1.69E-46
MS.gene060937	MS.gene95339	0.82364	1.24E-53	-1.69E-46
MS.gene060998	MS.gene95339	0.80527	1.45E-49	-1.69E-46
MS.gene061100	MS.gene95339	0.801666	8.08E-49	-1.69E-46
MS.gene06121	MS.gene95339	0.849939	2.34E-60	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95339.t1	MTR_2g039140	40.217	184	77	2	1	183	120	271	8.75e-35	124
MS.gene95339.t1	MTR_4g036430	89.744	39	4	0	1	39	31	69	1.55e-20	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95339.t1	AT3G29785	57.778	90	37	1	11	100	7	95	1.04e-32	114

Find 38 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGATACCAATTGAACTTAAT+TGG	0.076810	1.3:+18032414	None:intergenic
TCATCATCCTTCATCGATTC+TGG	0.247368	1.3:+18032674	None:intergenic
ATGGTGCGGACTTTGGCTTT+TGG	0.377376	1.3:-18032760	MS.gene95339:CDS
GATACCAATTGAACTTAATT+GGG	0.389115	1.3:+18032415	None:intergenic
ACAACCCAATTAAGTTCAAT+TGG	0.412295	1.3:-18032419	MS.gene95339:CDS
ACAGTAGCACTCCAACTATC+TGG	0.413891	1.3:+18032347	None:intergenic
TGTCTTCCCTACCAGATAGT+TGG	0.424640	1.3:-18032358	MS.gene95339:CDS
ATTTGACGATGTTCGTGATC+TGG	0.433721	1.3:-18032285	MS.gene95339:CDS
GAGATCCGACGGAGAGAGTT+GGG	0.442215	1.3:-18032251	MS.gene95339:CDS
AAGTTCGATGGTGCGGACTT+TGG	0.452497	1.3:-18032767	MS.gene95339:CDS
CACAGCTGTGAGTGGCTCCT+CGG	0.454182	1.3:-18032324	MS.gene95339:CDS
ACAGCTGTGAGTGGCTCCTC+GGG	0.470989	1.3:-18032323	MS.gene95339:CDS
TGAACTTTATTTGATGCTGA+AGG	0.474628	1.3:+18032521	None:intergenic
TGAGGCGGTTGTTTACGCTT+CGG	0.506448	1.3:-18032493	MS.gene95339:CDS
CTTTGTATGCAATACTGAAG+AGG	0.534584	1.3:+18032217	None:intergenic
AAAGAAACCAGAATCGATGA+AGG	0.539324	1.3:-18032681	MS.gene95339:CDS
AGAGATCCGACGGAGAGAGT+TGG	0.549236	1.3:-18032252	MS.gene95339:CDS
CAAATAAAGTTCATTTGATG+AGG	0.550433	1.3:-18032511	MS.gene95339:CDS
AACCACCGCTGGTCTTATGA+AGG	0.557775	1.3:-18032567	MS.gene95339:CDS
TAGCACTCCAACTATCTGGT+AGG	0.558134	1.3:+18032351	None:intergenic
TTTACGCTTCGGATGACAGA+AGG	0.562705	1.3:-18032482	MS.gene95339:CDS
GTGAAAATTGAAAAGTTCGA+TGG	0.563926	1.3:-18032779	MS.gene95339:CDS
GATGACAGAAGGCGCATCAG+TGG	0.593273	1.3:-18032471	MS.gene95339:CDS
GCTACTGTCACAGCTGTGAG+TGG	0.594785	1.3:-18032332	MS.gene95339:CDS
TTCTCAGTGAAGAGATCCGA+CGG	0.596721	1.3:-18032262	MS.gene95339:CDS
AGCACTCCAACTATCTGGTA+GGG	0.597976	1.3:+18032352	None:intergenic
ATAAAGTTCATTTGATGAGG+CGG	0.598437	1.3:-18032508	MS.gene95339:CDS
CTTCTCGATAGACAAGCACT+TGG	0.601850	1.3:-18032644	MS.gene95339:CDS
AATCGATGAAGGATGATGAG+TGG	0.606445	1.3:-18032670	MS.gene95339:CDS
AATTGAAAAGTTCGATGGTG+CGG	0.608192	1.3:-18032774	MS.gene95339:CDS
CAAGTGCTTGTCTATCGAGA+AGG	0.612004	1.3:+18032645	None:intergenic
TATGGCTGCAGACGAAGGAA+AGG	0.614378	1.3:-18032801	MS.gene95339:CDS
GGAGTTATGGCTGCAGACGA+AGG	0.617375	1.3:-18032806	None:intergenic
ATTCACCCAACTCTCTCCGT+CGG	0.618585	1.3:+18032246	None:intergenic
AGCCTTCATAAGACCAGCGG+TGG	0.620835	1.3:+18032565	None:intergenic
GCAAAAGAGAAAACCACCGC+TGG	0.626545	1.3:-18032578	MS.gene95339:CDS
TGGTATCGAATTTGACGATG+AGG	0.629176	1.3:-18032399	MS.gene95339:CDS
AAGAGCCTTCATAAGACCAG+CGG	0.707222	1.3:+18032562	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CAAATAAAGTTCATTTGATG+AGG	-	chr1.3:18032503-18032522	MS.gene95339:CDS	25.0%
!	GATACCAATTGAACTTAATT+GGG	+	chr1.3:18032602-18032621	None:intergenic	25.0%
	ACAACCCAATTAAGTTCAAT+TGG	-	chr1.3:18032595-18032614	MS.gene95339:CDS	30.0%
	ATAAAGTTCATTTGATGAGG+CGG	-	chr1.3:18032506-18032525	MS.gene95339:CDS	30.0%
	CGATACCAATTGAACTTAAT+TGG	+	chr1.3:18032603-18032622	None:intergenic	30.0%
	GTGAAAATTGAAAAGTTCGA+TGG	-	chr1.3:18032235-18032254	MS.gene95339:CDS	30.0%
!	TGAACTTTATTTGATGCTGA+AGG	+	chr1.3:18032496-18032515	None:intergenic	30.0%
	AAAGAAACCAGAATCGATGA+AGG	-	chr1.3:18032333-18032352	MS.gene95339:CDS	35.0%
	AATTGAAAAGTTCGATGGTG+CGG	-	chr1.3:18032240-18032259	MS.gene95339:CDS	35.0%
	CTTTGTATGCAATACTGAAG+AGG	+	chr1.3:18032800-18032819	None:intergenic	35.0%
	AATCGATGAAGGATGATGAG+TGG	-	chr1.3:18032344-18032363	MS.gene95339:CDS	40.0%
	ATTTGACGATGTTCGTGATC+TGG	-	chr1.3:18032729-18032748	MS.gene95339:CDS	40.0%
!	TGGTATCGAATTTGACGATG+AGG	-	chr1.3:18032615-18032634	MS.gene95339:CDS	40.0%
!	TTTCATCTTTTTGCTTCCCG+AGG	+	chr1.3:18032710-18032729	None:intergenic	40.0%
!!	TCATCATCCTTCATCGATTC+TGG	+	chr1.3:18032343-18032362	None:intergenic	40.0%
!!	TCTGGTTTCTTTTCTGTGAG+AGG	+	chr1.3:18032325-18032344	None:intergenic	40.0%
	AAGAGCCTTCATAAGACCAG+CGG	+	chr1.3:18032455-18032474	None:intergenic	45.0%
	ACAGTAGCACTCCAACTATC+TGG	+	chr1.3:18032670-18032689	None:intergenic	45.0%
	AGCACTCCAACTATCTGGTA+GGG	+	chr1.3:18032665-18032684	None:intergenic	45.0%
	CAAGTGCTTGTCTATCGAGA+AGG	+	chr1.3:18032372-18032391	None:intergenic	45.0%
	CTTCTCGATAGACAAGCACT+TGG	-	chr1.3:18032370-18032389	MS.gene95339:CDS	45.0%
	TAGCACTCCAACTATCTGGT+AGG	+	chr1.3:18032666-18032685	None:intergenic	45.0%
	TGTCTTCCCTACCAGATAGT+TGG	-	chr1.3:18032656-18032675	MS.gene95339:CDS	45.0%
	TTCTCAGTGAAGAGATCCGA+CGG	-	chr1.3:18032752-18032771	MS.gene95339:CDS	45.0%
	TTTACGCTTCGGATGACAGA+AGG	-	chr1.3:18032532-18032551	MS.gene95339:CDS	45.0%
	AAGTTCGATGGTGCGGACTT+TGG	-	chr1.3:18032247-18032266	MS.gene95339:CDS	50.0%
	ATTCACCCAACTCTCTCCGT+CGG	+	chr1.3:18032771-18032790	None:intergenic	50.0%
	GCAAAAGAGAAAACCACCGC+TGG	-	chr1.3:18032436-18032455	MS.gene95339:CDS	50.0%
	TGAGGCGGTTGTTTACGCTT+CGG	-	chr1.3:18032521-18032540	MS.gene95339:CDS	50.0%
!!	AACCACCGCTGGTCTTATGA+AGG	-	chr1.3:18032447-18032466	MS.gene95339:CDS	50.0%
!!!	ATGGTGCGGACTTTGGCTTT+TGG	-	chr1.3:18032254-18032273	MS.gene95339:CDS	50.0%
	AGAGATCCGACGGAGAGAGT+TGG	-	chr1.3:18032762-18032781	MS.gene95339:CDS	55.0%
	AGCCTTCATAAGACCAGCGG+TGG	+	chr1.3:18032452-18032471	None:intergenic	55.0%
	GAGATCCGACGGAGAGAGTT+GGG	-	chr1.3:18032763-18032782	MS.gene95339:CDS	55.0%
	GCTACTGTCACAGCTGTGAG+TGG	-	chr1.3:18032682-18032701	MS.gene95339:CDS	55.0%
!	GATGACAGAAGGCGCATCAG+TGG	-	chr1.3:18032543-18032562	MS.gene95339:CDS	55.0%
	ACAGCTGTGAGTGGCTCCTC+GGG	-	chr1.3:18032691-18032710	MS.gene95339:CDS	60.0%
	CACAGCTGTGAGTGGCTCCT+CGG	-	chr1.3:18032690-18032709	MS.gene95339:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	18032214	18032822	18032214	ID=MS.gene95339
chr1.3	mRNA	18032214	18032822	18032214	ID=MS.gene95339.t1;Parent=MS.gene95339
chr1.3	exon	18032214	18032822	18032214	ID=MS.gene95339.t1.exon1;Parent=MS.gene95339.t1
chr1.3	CDS	18032214	18032822	18032214	ID=cds.MS.gene95339.t1;Parent=MS.gene95339.t1

Gene Sequence

>MS.gene95339

ATGGCTGCAGACGAAGGAAAGGTGAAAATTGAAAAGTTCGATGGTGCGGACTTTGGCTTTTGGAAGATGCAGATCGAAGATTATTTGTATCAGAAAAAGCTACATCAACCTCTCACAGAAAAGAAACCAGAATCGATGAAGGATGATGAGTGGAACCTTCTCGATAGACAAGCACTTGGTGTTGTGCGATTGTCGTTATCTCGAAATGTTGCTTTTAACATAGCAAAAGAGAAAACCACCGCTGGTCTTATGAAGGCTCTTTCTAGCATGTACGAAAAGCCTTCAGCATCAAATAAAGTTCATTTGATGAGGCGGTTGTTTACGCTTCGGATGACAGAAGGCGCATCAGTGGCGCAACATATCAATGAACTTAATATTGTCACAACCCAATTAAGTTCAATTGGTATCGAATTTGACGATGAGGTACGAGCATTGATACTTTTGTCTTCCCTACCAGATAGTTGGAGTGCTACTGTCACAGCTGTGAGTGGCTCCTCGGGAAGCAAAAAGATGAAATTTGACGATGTTCGTGATCTGGTTCTCAGTGAAGAGATCCGACGGAGAGAGTTGGGTGAATCTTCATCCTCTTCAGTATTGCATACAAAGTAA

Protein sequence

>MS.gene95339.t1

MAADEGKVKIEKFDGADFGFWKMQIEDYLYQKKLHQPLTEKKPESMKDDEWNLLDRQALGVVRLSLSRNVAFNIAKEKTTAGLMKALSSMYEKPSASNKVHLMRRLFTLRMTEGASVAQHINELNIVTTQLSSIGIEFDDEVRALILLSSLPDSWSATVTAVSGSSGSKKMKFDDVRDLVLSEEIRRRELGESSSSSVLHTK