Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54377.t1 | XP_003621014.1 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.60E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54377.t1 | Q944L7 | 61.6 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.4e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54377.t1 | G7KWQ2 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.1e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene54377 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene54377 | 0.810054 | 1.40E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene54377 | 0.860688 | 1.73E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene54377 | 0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene54377 | -0.816995 | 4.15E-52 | -1.69E-46 |
| MS.gene049452 | MS.gene54377 | 0.814017 | 1.91E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene54377 | 0.855839 | 4.82E-62 | -1.69E-46 |
| MS.gene050085 | MS.gene54377 | 0.800199 | 1.61E-48 | -1.69E-46 |
| MS.gene050105 | MS.gene54377 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene050571 | MS.gene54377 | 0.816491 | 5.38E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene54377 | 0.812784 | 3.56E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene54377 | 0.877457 | 6.19E-69 | -1.69E-46 |
| MS.gene050941 | MS.gene54377 | 0.831587 | 1.53E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene54377 | 0.815225 | 1.03E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene54377 | 0.81278 | 3.57E-51 | -1.69E-46 |
| MS.gene051275 | MS.gene54377 | 0.820782 | 5.72E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene54377 | 0.833422 | 5.38E-56 | -1.69E-46 |
| MS.gene051363 | MS.gene54377 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene051490 | MS.gene54377 | 0.809991 | 1.44E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene54377 | 0.831491 | 1.62E-55 | -1.69E-46 |
| MS.gene051655 | MS.gene54377 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene051676 | MS.gene54377 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene54377 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene54377 | 0.8083 | 3.31E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene54377 | 0.849408 | 3.30E-60 | -1.69E-46 |
| MS.gene052118 | MS.gene54377 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene54377 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene54377 | 0.829406 | 5.24E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene54377 | 0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene54377 | 0.806877 | 6.65E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene54377 | 0.806638 | 7.46E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene54377 | 0.832201 | 1.08E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene54377 | 0.838519 | 2.74E-57 | -1.69E-46 |
| MS.gene05308 | MS.gene54377 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene54377 | 0.804119 | 2.52E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene54377 | 0.827211 | 1.77E-54 | -1.69E-46 |
| MS.gene05350 | MS.gene54377 | 0.809449 | 1.88E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene54377 | 0.825648 | 4.18E-54 | -1.69E-46 |
| MS.gene053726 | MS.gene54377 | 0.838657 | 2.53E-57 | -1.69E-46 |
| MS.gene053931 | MS.gene54377 | 0.833603 | 4.85E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene54377 | 0.820813 | 5.62E-53 | -1.69E-46 |
| MS.gene05439 | MS.gene54377 | 0.814849 | 1.25E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene54377 | 0.841343 | 5.03E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene54377 | 0.816035 | 6.80E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene54377 | 0.804074 | 2.57E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene54377 | 0.8753 | 3.44E-68 | -1.69E-46 |
| MS.gene054893 | MS.gene54377 | 0.879944 | 8.24E-70 | -1.69E-46 |
| MS.gene055147 | MS.gene54377 | 0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene54377 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene54377 | 0.829948 | 3.87E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene54377 | 0.850481 | 1.65E-60 | -1.69E-46 |
| MS.gene055442 | MS.gene54377 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene54377 | 0.821953 | 3.07E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene54377 | 0.805838 | 1.10E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene54377 | 0.806562 | 7.75E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene54377 | 0.807646 | 4.57E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene54377 | 0.815923 | 7.21E-52 | -1.69E-46 |
| MS.gene05615 | MS.gene54377 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene54377 | 0.817831 | 2.69E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene54377 | 0.819761 | 9.80E-53 | -1.69E-46 |
| MS.gene056509 | MS.gene54377 | 0.803331 | 3.67E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene54377 | 0.840557 | 8.09E-58 | -1.69E-46 |
| MS.gene056776 | MS.gene54377 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene54377 | 0.816348 | 5.79E-52 | -1.69E-46 |
| MS.gene056831 | MS.gene54377 | 0.816858 | 4.45E-52 | -1.69E-46 |
| MS.gene056834 | MS.gene54377 | 0.825596 | 4.30E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene54377 | 0.802191 | 6.31E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene54377 | 0.823935 | 1.06E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene54377 | 0.827372 | 1.62E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene54377 | 0.830359 | 3.07E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene54377 | 0.817753 | 2.80E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene54377 | 0.837451 | 5.16E-57 | -1.69E-46 |
| MS.gene057371 | MS.gene54377 | 0.812844 | 3.46E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene54377 | 0.814105 | 1.82E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene54377 | 0.80197 | 7.00E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene54377 | 0.833061 | 6.62E-56 | -1.69E-46 |
| MS.gene058095 | MS.gene54377 | 0.804322 | 2.28E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene54377 | -0.817745 | 2.81E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene54377 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene54377 | 0.832937 | 7.11E-56 | -1.69E-46 |
| MS.gene058592 | MS.gene54377 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene058708 | MS.gene54377 | -0.813585 | 2.38E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene54377 | 0.816649 | 4.96E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene54377 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene54377 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene54377 | 0.813867 | 2.06E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene54377 | 0.810324 | 1.22E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene54377 | -0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene059965 | MS.gene54377 | 0.810681 | 1.02E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene54377 | 0.821219 | 4.53E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene54377 | 0.805382 | 1.37E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene54377 | 0.803608 | 3.21E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene54377 | 0.828375 | 9.31E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene54377 | 0.80011 | 1.68E-48 | -1.69E-46 |
| MS.gene060310 | MS.gene54377 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene54377 | 0.811523 | 6.71E-51 | -1.69E-46 |
| MS.gene060520 | MS.gene54377 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene54377 | 0.822251 | 2.62E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene54377 | 0.81196 | 5.39E-51 | -1.69E-46 |
| MS.gene060840 | MS.gene54377 | 0.81265 | 3.81E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene54377 | 0.822559 | 2.22E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene54377 | 0.823511 | 1.33E-53 | -1.69E-46 |
| MS.gene060852 | MS.gene54377 | 0.823691 | 1.21E-53 | -1.69E-46 |
| MS.gene060932 | MS.gene54377 | 0.850054 | 2.18E-60 | -1.69E-46 |
| MS.gene060933 | MS.gene54377 | 0.820432 | 6.88E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene54377 | 0.830315 | 3.15E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene54377 | 0.838881 | 2.21E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene54377 | 0.806832 | 6.79E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene54377 | 0.823161 | 1.61E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54377.t1 | MTR_7g006040 | 98.684 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.20e-166 | 465 |
| MS.gene54377.t1 | MTR_8g064720 | 70.312 | 192 | 52 | 3 | 1 | 188 | 187 | 377 | 1.34e-86 | 262 |
| MS.gene54377.t1 | MTR_5g072900 | 38.824 | 170 | 89 | 5 | 33 | 189 | 219 | 386 | 8.90e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54377.t1 | AT1G18480 | 61.638 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.23e-91 | 275 |
| MS.gene54377.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 204 | 372 | 4.45e-21 | 90.9 |
| MS.gene54377.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 208 | 376 | 4.60e-21 | 90.9 |
| MS.gene54377.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 219 | 387 | 5.97e-21 | 90.5 |
Find 70 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGGGTTGCGGCTTTA+AGG | 0.182522 | 7.4:-93654242 | MS.gene54377:CDS |
| TTGAAAGAACATGTTGATTA+TGG | 0.215908 | 7.4:-93654132 | MS.gene54377:CDS |
| TGAGGTTAGTGATTGGTATA+AGG | 0.246230 | 7.4:-93654091 | MS.gene54377:CDS |
| AAGAGTTTCATGATGGGTTT+AGG | 0.248900 | 7.4:-93654263 | MS.gene54377:CDS |
| TGGTGTTAAGAGGATGATTA+TGG | 0.249368 | 7.4:-93653944 | MS.gene54377:CDS |
| TGGTGGTTTGCCCGAGGTTT+TGG | 0.263789 | 7.4:-93653836 | MS.gene54377:CDS |
| ACGTGGCGTTTCGTGGTGTT+AGG | 0.288942 | 7.4:-93654287 | MS.gene54377:CDS |
| TTATTCATCTGATTATATAA+AGG | 0.310568 | 7.4:+93653775 | None:intergenic |
| TAATGGTGTCTGCGAAAATA+AGG | 0.312538 | 7.4:-93653896 | MS.gene54377:CDS |
| TACACAAAATGTTACTGTTT+TGG | 0.322237 | 7.4:-93654190 | MS.gene54377:CDS |
| TTTATATAATCAGATGAATA+AGG | 0.349298 | 7.4:-93653773 | MS.gene54377:CDS |
| GACAATAAGGCGGCGAAAAC+CGG | 0.357356 | 7.4:+93654055 | None:intergenic |
| GAGGTTAGTGATTGGTATAA+GGG | 0.359259 | 7.4:-93654090 | MS.gene54377:CDS |
| GATTGGTATAAGGGTTTGTT+TGG | 0.360244 | 7.4:-93654081 | MS.gene54377:CDS |
| GGGAAGGTGGAAGAAGGGTT+TGG | 0.362537 | 7.4:-93653736 | MS.gene54377:CDS |
| CGAATGGACCGATTTCAAAA+AGG | 0.363226 | 7.4:-93654218 | MS.gene54377:CDS |
| ATTCAGAAGGAAGGGATTAA+TGG | 0.366442 | 7.4:-93653913 | MS.gene54377:CDS |
| AGAGTTTCATGATGGGTTTA+GGG | 0.373309 | 7.4:-93654262 | MS.gene54377:CDS |
| GCATTCCTTCCCCGACAATA+AGG | 0.375199 | 7.4:+93654042 | None:intergenic |
| TTCATGATGGGTTTAGGGCT+AGG | 0.377495 | 7.4:-93654257 | MS.gene54377:CDS |
| GGGGAAGGAATGCACTTGTT+TGG | 0.383176 | 7.4:-93654032 | MS.gene54377:CDS |
| TATGGGTTGGAGAAGATTAA+TGG | 0.389368 | 7.4:-93654114 | MS.gene54377:CDS |
| TGAAAGAACATGTTGATTAT+GGG | 0.411575 | 7.4:-93654131 | MS.gene54377:CDS |
| ATAAGGGTTTGTTTGGTAAC+CGG | 0.411872 | 7.4:-93654074 | MS.gene54377:CDS |
| TCATGATGGGTTTAGGGCTA+GGG | 0.424497 | 7.4:-93654256 | MS.gene54377:CDS |
| CGACGATTCCTGGTGTTAAG+AGG | 0.425093 | 7.4:-93653954 | MS.gene54377:CDS |
| ATGTAAAGGTTTGGAAGAAA+AGG | 0.436989 | 7.4:-93654334 | MS.gene54377:CDS |
| CGTGGCGTTTCGTGGTGTTA+GGG | 0.450367 | 7.4:-93654286 | MS.gene54377:CDS |
| CGCCGCCTTATTGTCGGGGA+AGG | 0.455393 | 7.4:-93654047 | MS.gene54377:CDS |
| AATGTTCACGTGGCGTTTCG+TGG | 0.456234 | 7.4:-93654294 | MS.gene54377:CDS |
| TCTGCGAAAATAAGGCGATT+AGG | 0.459167 | 7.4:-93653888 | MS.gene54377:CDS |
| GATGTTGGGAAGGTGGAAGA+AGG | 0.466879 | 7.4:-93653742 | MS.gene54377:CDS |
| AATAAGGAAAATGTGGATGT+TGG | 0.471510 | 7.4:-93653757 | MS.gene54377:CDS |
| TGGGTTTAGGGCTAGGGTTG+CGG | 0.472943 | 7.4:-93654250 | MS.gene54377:CDS |
| GGTGTTAAGAGGATGATTAT+GGG | 0.476200 | 7.4:-93653943 | MS.gene54377:CDS |
| AAATGTGGATGTTGGGAAGG+TGG | 0.504316 | 7.4:-93653749 | MS.gene54377:CDS |
| TCAGATGAATAAGGAAAATG+TGG | 0.505988 | 7.4:-93653764 | MS.gene54377:CDS |
| GTTAGGGAAGAGTTTCATGA+TGG | 0.506126 | 7.4:-93654270 | MS.gene54377:CDS |
| ATGTTGGGAAGGTGGAAGAA+GGG | 0.512967 | 7.4:-93653741 | MS.gene54377:CDS |
| AGATTGACCGTTATGGGGTG+AGG | 0.524683 | 7.4:-93653813 | MS.gene54377:CDS |
| GCCTTGACTTCCACTTGCCT+AGG | 0.528320 | 7.4:+93653685 | None:intergenic |
| GCAAGTGGAAGTCAAGGCTT+AGG | 0.533119 | 7.4:-93653680 | None:intergenic |
| ATGTCGAAAGGATGCGGTGG+TGG | 0.533822 | 7.4:-93653853 | MS.gene54377:CDS |
| CGGTCAATCTCCAAAACCTC+GGG | 0.534492 | 7.4:+93653826 | None:intergenic |
| TTAATGGTGAGGTTAGTGAT+TGG | 0.539710 | 7.4:-93654098 | MS.gene54377:CDS |
| ATAAGGAAAATGTGGATGTT+GGG | 0.548289 | 7.4:-93653756 | MS.gene54377:CDS |
| ACCTAGGCAAGTGGAAGTCA+AGG | 0.549753 | 7.4:-93653686 | MS.gene54377:CDS |
| TTAGGGAAGAGTTTCATGAT+GGG | 0.558605 | 7.4:-93654269 | MS.gene54377:CDS |
| ATGCGGTGGTGGTTTGCCCG+AGG | 0.563566 | 7.4:-93653842 | MS.gene54377:CDS |
| TTGTTGCTTAATAATCAAGA+TGG | 0.574078 | 7.4:-93653712 | MS.gene54377:CDS |
| ATCGATGTTGGTATGTCGAA+AGG | 0.575221 | 7.4:-93653865 | MS.gene54377:CDS |
| GTTGGAGAAGATTAATGGTG+AGG | 0.579243 | 7.4:-93654109 | MS.gene54377:CDS |
| GGGCATACGATTCAGAAGGA+AGG | 0.584494 | 7.4:-93653922 | MS.gene54377:CDS |
| TCAATATCCTCACCCCATAA+CGG | 0.588832 | 7.4:+93653806 | None:intergenic |
| ACGGTCAATCTCCAAAACCT+CGG | 0.600316 | 7.4:+93653825 | None:intergenic |
| GGCATACGATTCAGAAGGAA+GGG | 0.601131 | 7.4:-93653921 | MS.gene54377:CDS |
| AGAACATGTTGATTATGGGT+TGG | 0.606486 | 7.4:-93654127 | MS.gene54377:CDS |
| AAGGCGATTAGGATCGATGT+TGG | 0.608483 | 7.4:-93653877 | MS.gene54377:CDS |
| GGAAAATGTGGATGTTGGGA+AGG | 0.610345 | 7.4:-93653752 | MS.gene54377:CDS |
| ATAATCATCCTCTTAACACC+AGG | 0.619952 | 7.4:+93653946 | None:intergenic |
| GTTGCGGCTTTAAGGCCGAA+TGG | 0.620496 | 7.4:-93654234 | MS.gene54377:CDS |
| TTTGGAGATTGACCGTTATG+GGG | 0.621026 | 7.4:-93653818 | MS.gene54377:CDS |
| TATGGGGCATACGATTCAGA+AGG | 0.628721 | 7.4:-93653926 | MS.gene54377:CDS |
| ATAATCAAGATGGTAGACCT+AGG | 0.629740 | 7.4:-93653702 | MS.gene54377:CDS |
| GTGTTAAGAGGATGATTATG+GGG | 0.631883 | 7.4:-93653942 | MS.gene54377:CDS |
| AGATGGTAGACCTAGGCAAG+TGG | 0.641426 | 7.4:-93653695 | MS.gene54377:CDS |
| GTTGGTATGTCGAAAGGATG+CGG | 0.642403 | 7.4:-93653859 | MS.gene54377:CDS |
| TTCCTTCCCCGACAATAAGG+CGG | 0.649751 | 7.4:+93654045 | None:intergenic |
| TCCATTAGAAAATGTTCACG+TGG | 0.684935 | 7.4:-93654304 | MS.gene54377:CDS |
| GGTATGTCGAAAGGATGCGG+TGG | 0.743976 | 7.4:-93653856 | MS.gene54377:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATCTGATTATATAA+AGG | + | chr7.4:93654254-93654273 | None:intergenic | 15.0% |
| !! | TTTATATAATCAGATGAATA+AGG | - | chr7.4:93654253-93654272 | MS.gene54377:CDS | 15.0% |
| ! | GAAAAATCTATGTAAAGGTT+TGG | - | chr7.4:93653683-93653702 | MS.gene54377:CDS | 25.0% |
| !! | TACACAAAATGTTACTGTTT+TGG | - | chr7.4:93653836-93653855 | MS.gene54377:CDS | 25.0% |
| !! | TGAAAGAACATGTTGATTAT+GGG | - | chr7.4:93653895-93653914 | MS.gene54377:CDS | 25.0% |
| !! | TTGAAAGAACATGTTGATTA+TGG | - | chr7.4:93653894-93653913 | MS.gene54377:CDS | 25.0% |
| !! | TTGTTGCTTAATAATCAAGA+TGG | - | chr7.4:93654314-93654333 | MS.gene54377:CDS | 25.0% |
| !!! | GTAAAGAACCTTTTTGAAAT+CGG | + | chr7.4:93653819-93653838 | None:intergenic | 25.0% |
| AATAAGGAAAATGTGGATGT+TGG | - | chr7.4:93654269-93654288 | MS.gene54377:CDS | 30.0% | |
| ATAAGGAAAATGTGGATGTT+GGG | - | chr7.4:93654270-93654289 | MS.gene54377:CDS | 30.0% | |
| ATGTAAAGGTTTGGAAGAAA+AGG | - | chr7.4:93653692-93653711 | MS.gene54377:CDS | 30.0% | |
| TCAGATGAATAAGGAAAATG+TGG | - | chr7.4:93654262-93654281 | MS.gene54377:CDS | 30.0% | |
| ! | GATTCAATTTTTGTTCATGG+TGG | - | chr7.4:93653867-93653886 | MS.gene54377:CDS | 30.0% |
| ! | GGCTTAGAAAATTTTCAGAT+GGG | - | chr7.4:93654015-93654034 | MS.gene54377:CDS | 30.0% |
| ! | GGTGATTCAATTTTTGTTCA+TGG | - | chr7.4:93653864-93653883 | MS.gene54377:CDS | 30.0% |
| ! | TGGCTTAGAAAATTTTCAGA+TGG | - | chr7.4:93654014-93654033 | MS.gene54377:CDS | 30.0% |
| !!! | AATGTTACTGTTTTGGTAGT+TGG | - | chr7.4:93653843-93653862 | MS.gene54377:CDS | 30.0% |
| ATAATCAAGATGGTAGACCT+AGG | - | chr7.4:93654324-93654343 | MS.gene54377:CDS | 35.0% | |
| ATAATCATCCTCTTAACACC+AGG | + | chr7.4:93654083-93654102 | None:intergenic | 35.0% | |
| ATTCAGAAGGAAGGGATTAA+TGG | - | chr7.4:93654113-93654132 | MS.gene54377:CDS | 35.0% | |
| GAGGTTAGTGATTGGTATAA+GGG | - | chr7.4:93653936-93653955 | MS.gene54377:CDS | 35.0% | |
| GGTGTTAAGAGGATGATTAT+GGG | - | chr7.4:93654083-93654102 | MS.gene54377:CDS | 35.0% | |
| GTGTTAAGAGGATGATTATG+GGG | - | chr7.4:93654084-93654103 | MS.gene54377:CDS | 35.0% | |
| TAATGGTGTCTGCGAAAATA+AGG | - | chr7.4:93654130-93654149 | MS.gene54377:CDS | 35.0% | |
| TCCATTAGAAAATGTTCACG+TGG | - | chr7.4:93653722-93653741 | MS.gene54377:CDS | 35.0% | |
| TGAGGTTAGTGATTGGTATA+AGG | - | chr7.4:93653935-93653954 | MS.gene54377:CDS | 35.0% | |
| TTAATGGTGAGGTTAGTGAT+TGG | - | chr7.4:93653928-93653947 | MS.gene54377:CDS | 35.0% | |
| TTAGGGAAGAGTTTCATGAT+GGG | - | chr7.4:93653757-93653776 | MS.gene54377:CDS | 35.0% | |
| ! | AGAACATGTTGATTATGGGT+TGG | - | chr7.4:93653899-93653918 | MS.gene54377:CDS | 35.0% |
| ! | ATAAGGGTTTGTTTGGTAAC+CGG | - | chr7.4:93653952-93653971 | MS.gene54377:CDS | 35.0% |
| ! | GATTGGTATAAGGGTTTGTT+TGG | - | chr7.4:93653945-93653964 | MS.gene54377:CDS | 35.0% |
| ! | TGGTGTTAAGAGGATGATTA+TGG | - | chr7.4:93654082-93654101 | MS.gene54377:CDS | 35.0% |
| !! | AAGAGTTTCATGATGGGTTT+AGG | - | chr7.4:93653763-93653782 | MS.gene54377:CDS | 35.0% |
| !! | AGAGTTTCATGATGGGTTTA+GGG | - | chr7.4:93653764-93653783 | MS.gene54377:CDS | 35.0% |
| !! | TATGGGTTGGAGAAGATTAA+TGG | - | chr7.4:93653912-93653931 | MS.gene54377:CDS | 35.0% |
| !! | TTTTGGAGATTGACCGTTAT+GGG | - | chr7.4:93654207-93654226 | MS.gene54377:CDS | 35.0% |
| !!! | CTTTTTGAAATCGGTCCATT+CGG | + | chr7.4:93653810-93653829 | None:intergenic | 35.0% |
| ATCGATGTTGGTATGTCGAA+AGG | - | chr7.4:93654161-93654180 | MS.gene54377:CDS | 40.0% | |
| GTTAGGGAAGAGTTTCATGA+TGG | - | chr7.4:93653756-93653775 | MS.gene54377:CDS | 40.0% | |
| GTTGGAGAAGATTAATGGTG+AGG | - | chr7.4:93653917-93653936 | MS.gene54377:CDS | 40.0% | |
| TCAATATCCTCACCCCATAA+CGG | + | chr7.4:93654223-93654242 | None:intergenic | 40.0% | |
| TCTGCGAAAATAAGGCGATT+AGG | - | chr7.4:93654138-93654157 | MS.gene54377:CDS | 40.0% | |
| TTTGGAGATTGACCGTTATG+GGG | - | chr7.4:93654208-93654227 | MS.gene54377:CDS | 40.0% | |
| ! | CGAATGGACCGATTTCAAAA+AGG | - | chr7.4:93653808-93653827 | MS.gene54377:CDS | 40.0% |
| ! | GCCACGTGAACATTTTCTAA+TGG | + | chr7.4:93653726-93653745 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTGACCGTTA+TGG | - | chr7.4:93654206-93654225 | MS.gene54377:CDS | 40.0% |
| AAATGTGGATGTTGGGAAGG+TGG | - | chr7.4:93654277-93654296 | MS.gene54377:CDS | 45.0% | |
| AAGGCGATTAGGATCGATGT+TGG | - | chr7.4:93654149-93654168 | MS.gene54377:CDS | 45.0% | |
| ACGGTCAATCTCCAAAACCT+CGG | + | chr7.4:93654204-93654223 | None:intergenic | 45.0% | |
| ATGTTGGGAAGGTGGAAGAA+GGG | - | chr7.4:93654285-93654304 | MS.gene54377:CDS | 45.0% | |
| GGAAAATGTGGATGTTGGGA+AGG | - | chr7.4:93654274-93654293 | MS.gene54377:CDS | 45.0% | |
| GGCATACGATTCAGAAGGAA+GGG | - | chr7.4:93654105-93654124 | MS.gene54377:CDS | 45.0% | |
| GTTGGTATGTCGAAAGGATG+CGG | - | chr7.4:93654167-93654186 | MS.gene54377:CDS | 45.0% | |
| TATGGGGCATACGATTCAGA+AGG | - | chr7.4:93654100-93654119 | MS.gene54377:CDS | 45.0% | |
| ! | CATGTTTTGTCGACGATTCC+TGG | - | chr7.4:93654062-93654081 | MS.gene54377:CDS | 45.0% |
| !! | TCATGATGGGTTTAGGGCTA+GGG | - | chr7.4:93653770-93653789 | MS.gene54377:CDS | 45.0% |
| !! | TTCATGATGGGTTTAGGGCT+AGG | - | chr7.4:93653769-93653788 | MS.gene54377:CDS | 45.0% |
| AATGTTCACGTGGCGTTTCG+TGG | - | chr7.4:93653732-93653751 | MS.gene54377:CDS | 50.0% | |
| ACCTAGGCAAGTGGAAGTCA+AGG | - | chr7.4:93654340-93654359 | MS.gene54377:CDS | 50.0% | |
| AGATGGTAGACCTAGGCAAG+TGG | - | chr7.4:93654331-93654350 | MS.gene54377:CDS | 50.0% | |
| AGATTGACCGTTATGGGGTG+AGG | - | chr7.4:93654213-93654232 | MS.gene54377:CDS | 50.0% | |
| CGGTCAATCTCCAAAACCTC+GGG | + | chr7.4:93654203-93654222 | None:intergenic | 50.0% | |
| GACAATAAGGCGGCGAAAAC+CGG | + | chr7.4:93653974-93653993 | None:intergenic | 50.0% | |
| GATGTTGGGAAGGTGGAAGA+AGG | - | chr7.4:93654284-93654303 | MS.gene54377:CDS | 50.0% | |
| GCATTCCTTCCCCGACAATA+AGG | + | chr7.4:93653987-93654006 | None:intergenic | 50.0% | |
| GGGCATACGATTCAGAAGGA+AGG | - | chr7.4:93654104-93654123 | MS.gene54377:CDS | 50.0% | |
| GGGGAAGGAATGCACTTGTT+TGG | - | chr7.4:93653994-93654013 | MS.gene54377:CDS | 50.0% | |
| TTCCTTCCCCGACAATAAGG+CGG | + | chr7.4:93653984-93654003 | None:intergenic | 50.0% | |
| ! | CGACGATTCCTGGTGTTAAG+AGG | - | chr7.4:93654072-93654091 | MS.gene54377:CDS | 50.0% |
| !! | GGTTTTCGCCGCCTTATTGT+CGG | - | chr7.4:93653973-93653992 | MS.gene54377:CDS | 50.0% |
| !! | GTTTTCGCCGCCTTATTGTC+GGG | - | chr7.4:93653974-93653993 | MS.gene54377:CDS | 50.0% |
| !! | TTTTCGCCGCCTTATTGTCG+GGG | - | chr7.4:93653975-93653994 | MS.gene54377:CDS | 50.0% |
| ACGTGGCGTTTCGTGGTGTT+AGG | - | chr7.4:93653739-93653758 | MS.gene54377:CDS | 55.0% | |
| ATGTCGAAAGGATGCGGTGG+TGG | - | chr7.4:93654173-93654192 | MS.gene54377:CDS | 55.0% | |
| GCCTTGACTTCCACTTGCCT+AGG | + | chr7.4:93654344-93654363 | None:intergenic | 55.0% | |
| GGGAAGGTGGAAGAAGGGTT+TGG | - | chr7.4:93654290-93654309 | MS.gene54377:CDS | 55.0% | |
| GGTATGTCGAAAGGATGCGG+TGG | - | chr7.4:93654170-93654189 | MS.gene54377:CDS | 55.0% | |
| ! | CGTGGCGTTTCGTGGTGTTA+GGG | - | chr7.4:93653740-93653759 | MS.gene54377:CDS | 55.0% |
| ! | TGGGTTTAGGGCTAGGGTTG+CGG | - | chr7.4:93653776-93653795 | MS.gene54377:CDS | 55.0% |
| !! | GTTGCGGCTTTAAGGCCGAA+TGG | - | chr7.4:93653792-93653811 | MS.gene54377:CDS | 55.0% |
| !! | TGGTGGTTTGCCCGAGGTTT+TGG | - | chr7.4:93654190-93654209 | MS.gene54377:CDS | 55.0% |
| GGGCTAGGGTTGCGGCTTTA+AGG | - | chr7.4:93653784-93653803 | MS.gene54377:CDS | 60.0% | |
| ! | ATGCGGTGGTGGTTTGCCCG+AGG | - | chr7.4:93654184-93654203 | MS.gene54377:CDS | 65.0% |
| ! | CGCCGCCTTATTGTCGGGGA+AGG | - | chr7.4:93653979-93653998 | MS.gene54377:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93653681 | 93654367 | 93653681 | ID=MS.gene54377 |
| chr7.4 | mRNA | 93653681 | 93654367 | 93653681 | ID=MS.gene54377.t1;Parent=MS.gene54377 |
| chr7.4 | exon | 93653681 | 93654367 | 93653681 | ID=MS.gene54377.t1.exon1;Parent=MS.gene54377.t1 |
| chr7.4 | CDS | 93653681 | 93654367 | 93653681 | ID=cds.MS.gene54377.t1;Parent=MS.gene54377.t1 |
| Gene Sequence |
| Protein sequence |
