Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54380.t1 | XP_003621014.1 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.60E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54380.t1 | Q944L7 | 61.6 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.4e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54380.t1 | G7KWQ2 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.1e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene54380 | 0.809671 | 1.69E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene54380 | 0.807527 | 4.84E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene54380 | 0.858303 | 9.04E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene54380 | 0.813736 | 2.20E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene54380 | -0.806861 | 6.70E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene54380 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene54380 | 0.85081 | 1.33E-60 | -1.69E-46 |
| MS.gene050571 | MS.gene54380 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene54380 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene54380 | 0.872329 | 3.46E-67 | -1.69E-46 |
| MS.gene050941 | MS.gene54380 | 0.830305 | 3.16E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene54380 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene54380 | 0.811604 | 6.44E-51 | -1.69E-46 |
| MS.gene051275 | MS.gene54380 | 0.819019 | 1.45E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene54380 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene54380 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene54380 | 0.825728 | 4.00E-54 | -1.69E-46 |
| MS.gene051655 | MS.gene54380 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene54380 | 0.800972 | 1.12E-48 | -1.69E-46 |
| MS.gene051831 | MS.gene54380 | 0.804776 | 1.84E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene54380 | 0.846235 | 2.47E-59 | -1.69E-46 |
| MS.gene052118 | MS.gene54380 | 0.802284 | 6.03E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene54380 | 0.829815 | 4.17E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene54380 | 0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene54380 | 0.80634 | 8.63E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene54380 | 0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene54380 | 0.829385 | 5.30E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene54380 | 0.838387 | 2.96E-57 | -1.69E-46 |
| MS.gene053298 | MS.gene54380 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene05350 | MS.gene54380 | 0.807592 | 4.69E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene54380 | 0.827949 | 1.18E-54 | -1.69E-46 |
| MS.gene053726 | MS.gene54380 | 0.8329 | 7.26E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene54380 | 0.833543 | 5.02E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene54380 | 0.819321 | 1.24E-52 | -1.69E-46 |
| MS.gene05439 | MS.gene54380 | 0.812146 | 4.91E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene54380 | 0.841057 | 5.99E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene54380 | 0.813004 | 3.19E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene54380 | 0.873631 | 1.27E-67 | -1.69E-46 |
| MS.gene054893 | MS.gene54380 | 0.878518 | 2.63E-69 | -1.69E-46 |
| MS.gene055147 | MS.gene54380 | 0.827826 | 1.26E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene54380 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene54380 | 0.827887 | 1.22E-54 | -1.69E-46 |
| MS.gene055222 | MS.gene54380 | 0.848826 | 4.79E-60 | -1.69E-46 |
| MS.gene055442 | MS.gene54380 | 0.806655 | 7.40E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene54380 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene54380 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene055841 | MS.gene54380 | 0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene54380 | 0.805994 | 1.02E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene54380 | 0.811441 | 6.99E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene54380 | 0.822655 | 2.11E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene54380 | 0.817901 | 2.59E-52 | -1.69E-46 |
| MS.gene056509 | MS.gene54380 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene54380 | 0.833381 | 5.51E-56 | -1.69E-46 |
| MS.gene056787 | MS.gene54380 | 0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene056831 | MS.gene54380 | 0.813863 | 2.06E-51 | -1.69E-46 |
| MS.gene056834 | MS.gene54380 | 0.820335 | 7.24E-53 | -1.69E-46 |
| MS.gene056973 | MS.gene54380 | 0.815169 | 1.06E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene54380 | 0.825829 | 3.79E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene54380 | 0.833216 | 6.06E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene54380 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene54380 | 0.835055 | 2.10E-56 | -1.69E-46 |
| MS.gene057371 | MS.gene54380 | 0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene54380 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene54380 | 0.803508 | 3.37E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene54380 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene058095 | MS.gene54380 | 0.802491 | 5.47E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene54380 | -0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene54380 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene54380 | 0.831279 | 1.83E-55 | -1.69E-46 |
| MS.gene058592 | MS.gene54380 | 0.808756 | 2.65E-50 | -1.69E-46 |
| MS.gene058708 | MS.gene54380 | -0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene54380 | 0.813948 | 1.98E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene54380 | 0.819918 | 9.02E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene54380 | 0.810267 | 1.25E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene54380 | 0.807864 | 4.11E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene54380 | -0.817034 | 4.07E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene54380 | 0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene54380 | 0.818776 | 1.64E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene54380 | 0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene54380 | 0.828627 | 8.09E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene54380 | 0.802037 | 6.78E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene54380 | 0.813423 | 2.58E-51 | -1.69E-46 |
| MS.gene060520 | MS.gene54380 | 0.813161 | 2.94E-51 | -1.69E-46 |
| MS.gene060527 | MS.gene54380 | 0.820065 | 8.35E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene54380 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene54380 | 0.811223 | 7.79E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene54380 | 0.817765 | 2.78E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene54380 | 0.819566 | 1.09E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene54380 | 0.81947 | 1.14E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene54380 | 0.845429 | 4.09E-59 | -1.69E-46 |
| MS.gene060933 | MS.gene54380 | 0.815944 | 7.13E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene54380 | 0.826082 | 3.30E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene54380 | 0.83223 | 1.06E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene54380 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene06121 | MS.gene54380 | 0.821565 | 3.77E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54380.t1 | MTR_7g006040 | 98.684 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.20e-166 | 465 |
| MS.gene54380.t1 | MTR_8g064720 | 70.312 | 192 | 52 | 3 | 1 | 188 | 187 | 377 | 1.34e-86 | 262 |
| MS.gene54380.t1 | MTR_5g072900 | 38.824 | 170 | 89 | 5 | 33 | 189 | 219 | 386 | 8.90e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54380.t1 | AT1G18480 | 61.638 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.23e-91 | 275 |
| MS.gene54380.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 204 | 372 | 4.45e-21 | 90.9 |
| MS.gene54380.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 208 | 376 | 4.60e-21 | 90.9 |
| MS.gene54380.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 219 | 387 | 5.97e-21 | 90.5 |
Find 70 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGGGTTGCGGCTTTA+AGG | 0.182522 | 7.4:-93611283 | MS.gene54380:CDS |
| TTGAAAGAACATGTTGATTA+TGG | 0.215908 | 7.4:-93611173 | MS.gene54380:CDS |
| TGAGGTTAGTGATTGGTATA+AGG | 0.246230 | 7.4:-93611132 | MS.gene54380:CDS |
| AAGAGTTTCATGATGGGTTT+AGG | 0.248900 | 7.4:-93611304 | MS.gene54380:CDS |
| TGGTGTTAAGAGGATGATTA+TGG | 0.249368 | 7.4:-93610985 | MS.gene54380:CDS |
| TGGTGGTTTGCCCGAGGTTT+TGG | 0.263789 | 7.4:-93610877 | MS.gene54380:CDS |
| ACGTGGCGTTTCGTGGTGTT+AGG | 0.288942 | 7.4:-93611328 | MS.gene54380:CDS |
| TTATTCATCTGATTATATAA+AGG | 0.310568 | 7.4:+93610816 | None:intergenic |
| TAATGGTGTCTGCGAAAATA+AGG | 0.312538 | 7.4:-93610937 | MS.gene54380:CDS |
| TACACAAAATGTTACTGTTT+TGG | 0.322237 | 7.4:-93611231 | MS.gene54380:CDS |
| TTTATATAATCAGATGAATA+AGG | 0.349298 | 7.4:-93610814 | MS.gene54380:CDS |
| GACAATAAGGCGGCGAAAAC+CGG | 0.357356 | 7.4:+93611096 | None:intergenic |
| GAGGTTAGTGATTGGTATAA+GGG | 0.359259 | 7.4:-93611131 | MS.gene54380:CDS |
| GATTGGTATAAGGGTTTGTT+TGG | 0.360244 | 7.4:-93611122 | MS.gene54380:CDS |
| GGGAAGGTGGAAGAAGGGTT+TGG | 0.362537 | 7.4:-93610777 | MS.gene54380:CDS |
| CGAATGGACCGATTTCAAAA+AGG | 0.363226 | 7.4:-93611259 | MS.gene54380:CDS |
| ATTCAGAAGGAAGGGATTAA+TGG | 0.366442 | 7.4:-93610954 | MS.gene54380:CDS |
| AGAGTTTCATGATGGGTTTA+GGG | 0.373309 | 7.4:-93611303 | MS.gene54380:CDS |
| GCATTCCTTCCCCGACAATA+AGG | 0.375199 | 7.4:+93611083 | None:intergenic |
| TTCATGATGGGTTTAGGGCT+AGG | 0.377495 | 7.4:-93611298 | MS.gene54380:CDS |
| GGGGAAGGAATGCACTTGTT+TGG | 0.383176 | 7.4:-93611073 | MS.gene54380:CDS |
| TATGGGTTGGAGAAGATTAA+TGG | 0.389368 | 7.4:-93611155 | MS.gene54380:CDS |
| TGAAAGAACATGTTGATTAT+GGG | 0.411575 | 7.4:-93611172 | MS.gene54380:CDS |
| ATAAGGGTTTGTTTGGTAAC+CGG | 0.411872 | 7.4:-93611115 | MS.gene54380:CDS |
| TCATGATGGGTTTAGGGCTA+GGG | 0.424497 | 7.4:-93611297 | MS.gene54380:CDS |
| CGACGATTCCTGGTGTTAAG+AGG | 0.425093 | 7.4:-93610995 | MS.gene54380:CDS |
| ATGTAAAGGTTTGGAAGAAA+AGG | 0.436989 | 7.4:-93611375 | MS.gene54380:CDS |
| CGTGGCGTTTCGTGGTGTTA+GGG | 0.450367 | 7.4:-93611327 | MS.gene54380:CDS |
| CGCCGCCTTATTGTCGGGGA+AGG | 0.455393 | 7.4:-93611088 | MS.gene54380:CDS |
| AATGTTCACGTGGCGTTTCG+TGG | 0.456234 | 7.4:-93611335 | MS.gene54380:CDS |
| TCTGCGAAAATAAGGCGATT+AGG | 0.459167 | 7.4:-93610929 | MS.gene54380:CDS |
| GATGTTGGGAAGGTGGAAGA+AGG | 0.466879 | 7.4:-93610783 | MS.gene54380:CDS |
| AATAAGGAAAATGTGGATGT+TGG | 0.471510 | 7.4:-93610798 | MS.gene54380:CDS |
| TGGGTTTAGGGCTAGGGTTG+CGG | 0.472943 | 7.4:-93611291 | MS.gene54380:CDS |
| GGTGTTAAGAGGATGATTAT+GGG | 0.476200 | 7.4:-93610984 | MS.gene54380:CDS |
| AAATGTGGATGTTGGGAAGG+TGG | 0.504316 | 7.4:-93610790 | MS.gene54380:CDS |
| TCAGATGAATAAGGAAAATG+TGG | 0.505988 | 7.4:-93610805 | MS.gene54380:CDS |
| GTTAGGGAAGAGTTTCATGA+TGG | 0.506126 | 7.4:-93611311 | MS.gene54380:CDS |
| ATGTTGGGAAGGTGGAAGAA+GGG | 0.512967 | 7.4:-93610782 | MS.gene54380:CDS |
| AGATTGACCGTTATGGGGTG+AGG | 0.524683 | 7.4:-93610854 | MS.gene54380:CDS |
| GCCTTGACTTCCACTTGCCT+AGG | 0.528320 | 7.4:+93610726 | None:intergenic |
| GCAAGTGGAAGTCAAGGCTT+AGG | 0.533119 | 7.4:-93610721 | None:intergenic |
| ATGTCGAAAGGATGCGGTGG+TGG | 0.533822 | 7.4:-93610894 | MS.gene54380:CDS |
| CGGTCAATCTCCAAAACCTC+GGG | 0.534492 | 7.4:+93610867 | None:intergenic |
| TTAATGGTGAGGTTAGTGAT+TGG | 0.539710 | 7.4:-93611139 | MS.gene54380:CDS |
| ATAAGGAAAATGTGGATGTT+GGG | 0.548289 | 7.4:-93610797 | MS.gene54380:CDS |
| ACCTAGGCAAGTGGAAGTCA+AGG | 0.549753 | 7.4:-93610727 | MS.gene54380:CDS |
| TTAGGGAAGAGTTTCATGAT+GGG | 0.558605 | 7.4:-93611310 | MS.gene54380:CDS |
| ATGCGGTGGTGGTTTGCCCG+AGG | 0.563566 | 7.4:-93610883 | MS.gene54380:CDS |
| TTGTTGCTTAATAATCAAGA+TGG | 0.574078 | 7.4:-93610753 | MS.gene54380:CDS |
| ATCGATGTTGGTATGTCGAA+AGG | 0.575221 | 7.4:-93610906 | MS.gene54380:CDS |
| GTTGGAGAAGATTAATGGTG+AGG | 0.579243 | 7.4:-93611150 | MS.gene54380:CDS |
| GGGCATACGATTCAGAAGGA+AGG | 0.584494 | 7.4:-93610963 | MS.gene54380:CDS |
| TCAATATCCTCACCCCATAA+CGG | 0.588832 | 7.4:+93610847 | None:intergenic |
| ACGGTCAATCTCCAAAACCT+CGG | 0.600316 | 7.4:+93610866 | None:intergenic |
| GGCATACGATTCAGAAGGAA+GGG | 0.601131 | 7.4:-93610962 | MS.gene54380:CDS |
| AGAACATGTTGATTATGGGT+TGG | 0.606486 | 7.4:-93611168 | MS.gene54380:CDS |
| AAGGCGATTAGGATCGATGT+TGG | 0.608483 | 7.4:-93610918 | MS.gene54380:CDS |
| GGAAAATGTGGATGTTGGGA+AGG | 0.610345 | 7.4:-93610793 | MS.gene54380:CDS |
| ATAATCATCCTCTTAACACC+AGG | 0.619952 | 7.4:+93610987 | None:intergenic |
| GTTGCGGCTTTAAGGCCGAA+TGG | 0.620496 | 7.4:-93611275 | MS.gene54380:CDS |
| TTTGGAGATTGACCGTTATG+GGG | 0.621026 | 7.4:-93610859 | MS.gene54380:CDS |
| TATGGGGCATACGATTCAGA+AGG | 0.628721 | 7.4:-93610967 | MS.gene54380:CDS |
| ATAATCAAGATGGTAGACCT+AGG | 0.629740 | 7.4:-93610743 | MS.gene54380:CDS |
| GTGTTAAGAGGATGATTATG+GGG | 0.631883 | 7.4:-93610983 | MS.gene54380:CDS |
| AGATGGTAGACCTAGGCAAG+TGG | 0.641426 | 7.4:-93610736 | MS.gene54380:CDS |
| GTTGGTATGTCGAAAGGATG+CGG | 0.642403 | 7.4:-93610900 | MS.gene54380:CDS |
| TTCCTTCCCCGACAATAAGG+CGG | 0.649751 | 7.4:+93611086 | None:intergenic |
| TCCATTAGAAAATGTTCACG+TGG | 0.684935 | 7.4:-93611345 | MS.gene54380:CDS |
| GGTATGTCGAAAGGATGCGG+TGG | 0.743976 | 7.4:-93610897 | MS.gene54380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATCTGATTATATAA+AGG | + | chr7.4:93611295-93611314 | None:intergenic | 15.0% |
| !! | TTTATATAATCAGATGAATA+AGG | - | chr7.4:93611294-93611313 | MS.gene54380:CDS | 15.0% |
| ! | GAAAAATCTATGTAAAGGTT+TGG | - | chr7.4:93610724-93610743 | MS.gene54380:CDS | 25.0% |
| !! | TACACAAAATGTTACTGTTT+TGG | - | chr7.4:93610877-93610896 | MS.gene54380:CDS | 25.0% |
| !! | TGAAAGAACATGTTGATTAT+GGG | - | chr7.4:93610936-93610955 | MS.gene54380:CDS | 25.0% |
| !! | TTGAAAGAACATGTTGATTA+TGG | - | chr7.4:93610935-93610954 | MS.gene54380:CDS | 25.0% |
| !! | TTGTTGCTTAATAATCAAGA+TGG | - | chr7.4:93611355-93611374 | MS.gene54380:CDS | 25.0% |
| !!! | GTAAAGAACCTTTTTGAAAT+CGG | + | chr7.4:93610860-93610879 | None:intergenic | 25.0% |
| AATAAGGAAAATGTGGATGT+TGG | - | chr7.4:93611310-93611329 | MS.gene54380:CDS | 30.0% | |
| ATAAGGAAAATGTGGATGTT+GGG | - | chr7.4:93611311-93611330 | MS.gene54380:CDS | 30.0% | |
| ATGTAAAGGTTTGGAAGAAA+AGG | - | chr7.4:93610733-93610752 | MS.gene54380:CDS | 30.0% | |
| TCAGATGAATAAGGAAAATG+TGG | - | chr7.4:93611303-93611322 | MS.gene54380:CDS | 30.0% | |
| ! | GATTCAATTTTTGTTCATGG+TGG | - | chr7.4:93610908-93610927 | MS.gene54380:CDS | 30.0% |
| ! | GGCTTAGAAAATTTTCAGAT+GGG | - | chr7.4:93611056-93611075 | MS.gene54380:CDS | 30.0% |
| ! | GGTGATTCAATTTTTGTTCA+TGG | - | chr7.4:93610905-93610924 | MS.gene54380:CDS | 30.0% |
| ! | TGGCTTAGAAAATTTTCAGA+TGG | - | chr7.4:93611055-93611074 | MS.gene54380:CDS | 30.0% |
| !!! | AATGTTACTGTTTTGGTAGT+TGG | - | chr7.4:93610884-93610903 | MS.gene54380:CDS | 30.0% |
| ATAATCAAGATGGTAGACCT+AGG | - | chr7.4:93611365-93611384 | MS.gene54380:CDS | 35.0% | |
| ATAATCATCCTCTTAACACC+AGG | + | chr7.4:93611124-93611143 | None:intergenic | 35.0% | |
| ATTCAGAAGGAAGGGATTAA+TGG | - | chr7.4:93611154-93611173 | MS.gene54380:CDS | 35.0% | |
| GAGGTTAGTGATTGGTATAA+GGG | - | chr7.4:93610977-93610996 | MS.gene54380:CDS | 35.0% | |
| GGTGTTAAGAGGATGATTAT+GGG | - | chr7.4:93611124-93611143 | MS.gene54380:CDS | 35.0% | |
| GTGTTAAGAGGATGATTATG+GGG | - | chr7.4:93611125-93611144 | MS.gene54380:CDS | 35.0% | |
| TAATGGTGTCTGCGAAAATA+AGG | - | chr7.4:93611171-93611190 | MS.gene54380:CDS | 35.0% | |
| TCCATTAGAAAATGTTCACG+TGG | - | chr7.4:93610763-93610782 | MS.gene54380:CDS | 35.0% | |
| TGAGGTTAGTGATTGGTATA+AGG | - | chr7.4:93610976-93610995 | MS.gene54380:CDS | 35.0% | |
| TTAATGGTGAGGTTAGTGAT+TGG | - | chr7.4:93610969-93610988 | MS.gene54380:CDS | 35.0% | |
| TTAGGGAAGAGTTTCATGAT+GGG | - | chr7.4:93610798-93610817 | MS.gene54380:CDS | 35.0% | |
| ! | AGAACATGTTGATTATGGGT+TGG | - | chr7.4:93610940-93610959 | MS.gene54380:CDS | 35.0% |
| ! | ATAAGGGTTTGTTTGGTAAC+CGG | - | chr7.4:93610993-93611012 | MS.gene54380:CDS | 35.0% |
| ! | GATTGGTATAAGGGTTTGTT+TGG | - | chr7.4:93610986-93611005 | MS.gene54380:CDS | 35.0% |
| ! | TGGTGTTAAGAGGATGATTA+TGG | - | chr7.4:93611123-93611142 | MS.gene54380:CDS | 35.0% |
| !! | AAGAGTTTCATGATGGGTTT+AGG | - | chr7.4:93610804-93610823 | MS.gene54380:CDS | 35.0% |
| !! | AGAGTTTCATGATGGGTTTA+GGG | - | chr7.4:93610805-93610824 | MS.gene54380:CDS | 35.0% |
| !! | TATGGGTTGGAGAAGATTAA+TGG | - | chr7.4:93610953-93610972 | MS.gene54380:CDS | 35.0% |
| !! | TTTTGGAGATTGACCGTTAT+GGG | - | chr7.4:93611248-93611267 | MS.gene54380:CDS | 35.0% |
| !!! | CTTTTTGAAATCGGTCCATT+CGG | + | chr7.4:93610851-93610870 | None:intergenic | 35.0% |
| ATCGATGTTGGTATGTCGAA+AGG | - | chr7.4:93611202-93611221 | MS.gene54380:CDS | 40.0% | |
| GTTAGGGAAGAGTTTCATGA+TGG | - | chr7.4:93610797-93610816 | MS.gene54380:CDS | 40.0% | |
| GTTGGAGAAGATTAATGGTG+AGG | - | chr7.4:93610958-93610977 | MS.gene54380:CDS | 40.0% | |
| TCAATATCCTCACCCCATAA+CGG | + | chr7.4:93611264-93611283 | None:intergenic | 40.0% | |
| TCTGCGAAAATAAGGCGATT+AGG | - | chr7.4:93611179-93611198 | MS.gene54380:CDS | 40.0% | |
| TTTGGAGATTGACCGTTATG+GGG | - | chr7.4:93611249-93611268 | MS.gene54380:CDS | 40.0% | |
| ! | CGAATGGACCGATTTCAAAA+AGG | - | chr7.4:93610849-93610868 | MS.gene54380:CDS | 40.0% |
| ! | GCCACGTGAACATTTTCTAA+TGG | + | chr7.4:93610767-93610786 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTGACCGTTA+TGG | - | chr7.4:93611247-93611266 | MS.gene54380:CDS | 40.0% |
| AAATGTGGATGTTGGGAAGG+TGG | - | chr7.4:93611318-93611337 | MS.gene54380:CDS | 45.0% | |
| AAGGCGATTAGGATCGATGT+TGG | - | chr7.4:93611190-93611209 | MS.gene54380:CDS | 45.0% | |
| ACGGTCAATCTCCAAAACCT+CGG | + | chr7.4:93611245-93611264 | None:intergenic | 45.0% | |
| ATGTTGGGAAGGTGGAAGAA+GGG | - | chr7.4:93611326-93611345 | MS.gene54380:CDS | 45.0% | |
| GGAAAATGTGGATGTTGGGA+AGG | - | chr7.4:93611315-93611334 | MS.gene54380:CDS | 45.0% | |
| GGCATACGATTCAGAAGGAA+GGG | - | chr7.4:93611146-93611165 | MS.gene54380:CDS | 45.0% | |
| GTTGGTATGTCGAAAGGATG+CGG | - | chr7.4:93611208-93611227 | MS.gene54380:CDS | 45.0% | |
| TATGGGGCATACGATTCAGA+AGG | - | chr7.4:93611141-93611160 | MS.gene54380:CDS | 45.0% | |
| ! | CATGTTTTGTCGACGATTCC+TGG | - | chr7.4:93611103-93611122 | MS.gene54380:CDS | 45.0% |
| !! | TCATGATGGGTTTAGGGCTA+GGG | - | chr7.4:93610811-93610830 | MS.gene54380:CDS | 45.0% |
| !! | TTCATGATGGGTTTAGGGCT+AGG | - | chr7.4:93610810-93610829 | MS.gene54380:CDS | 45.0% |
| AATGTTCACGTGGCGTTTCG+TGG | - | chr7.4:93610773-93610792 | MS.gene54380:CDS | 50.0% | |
| ACCTAGGCAAGTGGAAGTCA+AGG | - | chr7.4:93611381-93611400 | MS.gene54380:CDS | 50.0% | |
| AGATGGTAGACCTAGGCAAG+TGG | - | chr7.4:93611372-93611391 | MS.gene54380:CDS | 50.0% | |
| AGATTGACCGTTATGGGGTG+AGG | - | chr7.4:93611254-93611273 | MS.gene54380:CDS | 50.0% | |
| CGGTCAATCTCCAAAACCTC+GGG | + | chr7.4:93611244-93611263 | None:intergenic | 50.0% | |
| GACAATAAGGCGGCGAAAAC+CGG | + | chr7.4:93611015-93611034 | None:intergenic | 50.0% | |
| GATGTTGGGAAGGTGGAAGA+AGG | - | chr7.4:93611325-93611344 | MS.gene54380:CDS | 50.0% | |
| GCATTCCTTCCCCGACAATA+AGG | + | chr7.4:93611028-93611047 | None:intergenic | 50.0% | |
| GGGCATACGATTCAGAAGGA+AGG | - | chr7.4:93611145-93611164 | MS.gene54380:CDS | 50.0% | |
| GGGGAAGGAATGCACTTGTT+TGG | - | chr7.4:93611035-93611054 | MS.gene54380:CDS | 50.0% | |
| TTCCTTCCCCGACAATAAGG+CGG | + | chr7.4:93611025-93611044 | None:intergenic | 50.0% | |
| ! | CGACGATTCCTGGTGTTAAG+AGG | - | chr7.4:93611113-93611132 | MS.gene54380:CDS | 50.0% |
| !! | GGTTTTCGCCGCCTTATTGT+CGG | - | chr7.4:93611014-93611033 | MS.gene54380:CDS | 50.0% |
| !! | GTTTTCGCCGCCTTATTGTC+GGG | - | chr7.4:93611015-93611034 | MS.gene54380:CDS | 50.0% |
| !! | TTTTCGCCGCCTTATTGTCG+GGG | - | chr7.4:93611016-93611035 | MS.gene54380:CDS | 50.0% |
| ACGTGGCGTTTCGTGGTGTT+AGG | - | chr7.4:93610780-93610799 | MS.gene54380:CDS | 55.0% | |
| ATGTCGAAAGGATGCGGTGG+TGG | - | chr7.4:93611214-93611233 | MS.gene54380:CDS | 55.0% | |
| GCCTTGACTTCCACTTGCCT+AGG | + | chr7.4:93611385-93611404 | None:intergenic | 55.0% | |
| GGGAAGGTGGAAGAAGGGTT+TGG | - | chr7.4:93611331-93611350 | MS.gene54380:CDS | 55.0% | |
| GGTATGTCGAAAGGATGCGG+TGG | - | chr7.4:93611211-93611230 | MS.gene54380:CDS | 55.0% | |
| ! | CGTGGCGTTTCGTGGTGTTA+GGG | - | chr7.4:93610781-93610800 | MS.gene54380:CDS | 55.0% |
| ! | TGGGTTTAGGGCTAGGGTTG+CGG | - | chr7.4:93610817-93610836 | MS.gene54380:CDS | 55.0% |
| !! | GTTGCGGCTTTAAGGCCGAA+TGG | - | chr7.4:93610833-93610852 | MS.gene54380:CDS | 55.0% |
| !! | TGGTGGTTTGCCCGAGGTTT+TGG | - | chr7.4:93611231-93611250 | MS.gene54380:CDS | 55.0% |
| GGGCTAGGGTTGCGGCTTTA+AGG | - | chr7.4:93610825-93610844 | MS.gene54380:CDS | 60.0% | |
| ! | ATGCGGTGGTGGTTTGCCCG+AGG | - | chr7.4:93611225-93611244 | MS.gene54380:CDS | 65.0% |
| ! | CGCCGCCTTATTGTCGGGGA+AGG | - | chr7.4:93611020-93611039 | MS.gene54380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93610722 | 93611408 | 93610722 | ID=MS.gene54380 |
| chr7.4 | mRNA | 93610722 | 93611408 | 93610722 | ID=MS.gene54380.t1;Parent=MS.gene54380 |
| chr7.4 | exon | 93610722 | 93611408 | 93610722 | ID=MS.gene54380.t1.exon1;Parent=MS.gene54380.t1 |
| chr7.4 | CDS | 93610722 | 93611408 | 93610722 | ID=cds.MS.gene54380.t1;Parent=MS.gene54380.t1 |
| Gene Sequence |
| Protein sequence |
