Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42295.t1 | XP_013462188.2 | 96.4 | 714 | 25 | 1 | 1 | 713 | 9 | 722 | 0.00E+00 | 1373.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42295.t1 | Q8W4S4 | 71.1 | 714 | 204 | 2 | 1 | 713 | 22 | 734 | 2.3e-301 | 1036.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42295.t1 | A0A072V4D9 | 96.4 | 713 | 25 | 1 | 1 | 712 | 9 | 721 | 0.0e+00 | 1371.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene42295 | 0.804153 | 2.48E-49 | -1.69E-46 |
MS.gene049166 | MS.gene42295 | 0.834509 | 2.88E-56 | -1.69E-46 |
MS.gene049283 | MS.gene42295 | 0.802765 | 4.80E-49 | -1.69E-46 |
MS.gene049368 | MS.gene42295 | 0.800296 | 1.54E-48 | -1.69E-46 |
MS.gene049786 | MS.gene42295 | 0.840279 | 9.57E-58 | -1.69E-46 |
MS.gene049983 | MS.gene42295 | 0.811962 | 5.38E-51 | -1.69E-46 |
MS.gene050084 | MS.gene42295 | 0.826141 | 3.19E-54 | -1.69E-46 |
MS.gene050085 | MS.gene42295 | 0.853719 | 1.98E-61 | -1.69E-46 |
MS.gene050114 | MS.gene42295 | 0.823913 | 1.07E-53 | -1.69E-46 |
MS.gene050288 | MS.gene42295 | 0.817386 | 3.39E-52 | -1.69E-46 |
MS.gene050317 | MS.gene42295 | 0.838593 | 2.62E-57 | -1.69E-46 |
MS.gene050359 | MS.gene42295 | 0.816307 | 5.92E-52 | -1.69E-46 |
MS.gene050646 | MS.gene42295 | 0.813467 | 2.52E-51 | -1.69E-46 |
MS.gene050654 | MS.gene42295 | 0.823204 | 1.57E-53 | -1.69E-46 |
MS.gene050752 | MS.gene42295 | 0.820019 | 8.56E-53 | -1.69E-46 |
MS.gene050838 | MS.gene42295 | 0.815323 | 9.80E-52 | -1.69E-46 |
MS.gene050941 | MS.gene42295 | 0.823338 | 1.46E-53 | -1.69E-46 |
MS.gene051003 | MS.gene42295 | 0.852452 | 4.57E-61 | -1.69E-46 |
MS.gene051184 | MS.gene42295 | 0.838941 | 2.13E-57 | -1.69E-46 |
MS.gene051245 | MS.gene42295 | 0.824465 | 7.95E-54 | -1.69E-46 |
MS.gene051343 | MS.gene42295 | 0.837801 | 4.20E-57 | -1.69E-46 |
MS.gene051452 | MS.gene42295 | 0.819831 | 9.45E-53 | -1.69E-46 |
MS.gene051756 | MS.gene42295 | 0.8202 | 7.78E-53 | -1.69E-46 |
MS.gene051757 | MS.gene42295 | 0.834136 | 3.57E-56 | -1.69E-46 |
MS.gene051831 | MS.gene42295 | 0.832625 | 8.50E-56 | -1.69E-46 |
MS.gene051975 | MS.gene42295 | 0.839676 | 1.37E-57 | -1.69E-46 |
MS.gene052072 | MS.gene42295 | 0.810192 | 1.30E-50 | -1.69E-46 |
MS.gene052242 | MS.gene42295 | -0.813998 | 1.93E-51 | -1.69E-46 |
MS.gene052307 | MS.gene42295 | 0.816157 | 6.39E-52 | -1.69E-46 |
MS.gene052370 | MS.gene42295 | 0.83622 | 1.06E-56 | -1.69E-46 |
MS.gene052434 | MS.gene42295 | 0.842816 | 2.05E-58 | -1.69E-46 |
MS.gene052609 | MS.gene42295 | 0.80949 | 1.84E-50 | -1.69E-46 |
MS.gene052889 | MS.gene42295 | 0.803211 | 3.88E-49 | -1.69E-46 |
MS.gene052932 | MS.gene42295 | 0.801274 | 9.73E-49 | -1.69E-46 |
MS.gene052954 | MS.gene42295 | 0.802819 | 4.68E-49 | -1.69E-46 |
MS.gene053058 | MS.gene42295 | 0.814146 | 1.79E-51 | -1.69E-46 |
MS.gene053295 | MS.gene42295 | 0.807274 | 5.48E-50 | -1.69E-46 |
MS.gene053381 | MS.gene42295 | 0.839691 | 1.36E-57 | -1.69E-46 |
MS.gene05344 | MS.gene42295 | -0.804571 | 2.03E-49 | -1.69E-46 |
MS.gene053564 | MS.gene42295 | 0.802947 | 4.41E-49 | -1.69E-46 |
MS.gene053963 | MS.gene42295 | 0.811719 | 6.08E-51 | -1.69E-46 |
MS.gene054403 | MS.gene42295 | 0.818385 | 2.02E-52 | -1.69E-46 |
MS.gene054823 | MS.gene42295 | 0.807807 | 4.22E-50 | -1.69E-46 |
MS.gene05517 | MS.gene42295 | 0.800589 | 1.34E-48 | -1.69E-46 |
MS.gene055311 | MS.gene42295 | 0.811964 | 5.38E-51 | -1.69E-46 |
MS.gene055442 | MS.gene42295 | 0.80033 | 1.52E-48 | -1.69E-46 |
MS.gene055513 | MS.gene42295 | 0.804923 | 1.71E-49 | -1.69E-46 |
MS.gene055603 | MS.gene42295 | 0.809299 | 2.03E-50 | -1.69E-46 |
MS.gene056097 | MS.gene42295 | 0.809653 | 1.70E-50 | -1.69E-46 |
MS.gene056181 | MS.gene42295 | 0.849348 | 3.43E-60 | -1.69E-46 |
MS.gene056699 | MS.gene42295 | 0.831142 | 1.97E-55 | -1.69E-46 |
MS.gene056787 | MS.gene42295 | 0.867324 | 1.49E-65 | -1.69E-46 |
MS.gene056849 | MS.gene42295 | 0.827408 | 1.59E-54 | -1.69E-46 |
MS.gene056986 | MS.gene42295 | 0.848239 | 6.96E-60 | -1.69E-46 |
MS.gene056992 | MS.gene42295 | 0.813466 | 2.52E-51 | -1.69E-46 |
MS.gene057094 | MS.gene42295 | 0.801361 | 9.34E-49 | -1.69E-46 |
MS.gene057140 | MS.gene42295 | 0.826953 | 2.04E-54 | -1.69E-46 |
MS.gene057234 | MS.gene42295 | 0.831684 | 1.45E-55 | -1.69E-46 |
MS.gene057890 | MS.gene42295 | -0.808681 | 2.75E-50 | -1.69E-46 |
MS.gene057999 | MS.gene42295 | 0.854132 | 1.51E-61 | -1.69E-46 |
MS.gene058054 | MS.gene42295 | 0.840983 | 6.26E-58 | -1.69E-46 |
MS.gene058055 | MS.gene42295 | 0.835737 | 1.41E-56 | -1.69E-46 |
MS.gene058238 | MS.gene42295 | 0.821172 | 4.65E-53 | -1.69E-46 |
MS.gene058292 | MS.gene42295 | 0.809822 | 1.56E-50 | -1.69E-46 |
MS.gene058592 | MS.gene42295 | 0.828352 | 9.43E-55 | -1.69E-46 |
MS.gene058646 | MS.gene42295 | 0.817638 | 2.97E-52 | -1.69E-46 |
MS.gene058654 | MS.gene42295 | 0.827123 | 1.86E-54 | -1.69E-46 |
MS.gene058758 | MS.gene42295 | 0.815728 | 7.97E-52 | -1.69E-46 |
MS.gene058906 | MS.gene42295 | 0.800637 | 1.31E-48 | -1.69E-46 |
MS.gene059007 | MS.gene42295 | 0.801187 | 1.01E-48 | -1.69E-46 |
MS.gene059050 | MS.gene42295 | 0.8642 | 1.44E-64 | -1.69E-46 |
MS.gene059146 | MS.gene42295 | 0.834536 | 2.83E-56 | -1.69E-46 |
MS.gene059360 | MS.gene42295 | 0.8357 | 1.44E-56 | -1.69E-46 |
MS.gene06010 | MS.gene42295 | 0.833675 | 4.65E-56 | -1.69E-46 |
MS.gene06011 | MS.gene42295 | 0.840182 | 1.01E-57 | -1.69E-46 |
MS.gene060296 | MS.gene42295 | 0.807989 | 3.86E-50 | -1.69E-46 |
MS.gene060763 | MS.gene42295 | 0.809824 | 1.56E-50 | -1.69E-46 |
MS.gene060869 | MS.gene42295 | 0.802927 | 4.45E-49 | -1.69E-46 |
MS.gene060870 | MS.gene42295 | 0.816496 | 5.37E-52 | -1.69E-46 |
MS.gene060933 | MS.gene42295 | 0.811001 | 8.71E-51 | -1.69E-46 |
MS.gene060935 | MS.gene42295 | 0.827408 | 1.59E-54 | -1.69E-46 |
MS.gene060937 | MS.gene42295 | 0.836342 | 9.90E-57 | -1.69E-46 |
MS.gene061100 | MS.gene42295 | 0.801047 | 1.08E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42295.t1 | MTR_3g112500 | 96.353 | 713 | 25 | 1 | 1 | 712 | 9 | 721 | 0.0 | 1429 |
MS.gene42295.t1 | MTR_4g071070 | 70.687 | 713 | 208 | 1 | 1 | 713 | 22 | 733 | 0.0 | 1058 |
MS.gene42295.t1 | MTR_2g093210 | 59.244 | 714 | 289 | 2 | 1 | 713 | 19 | 731 | 0.0 | 892 |
MS.gene42295.t1 | MTR_4g061090 | 59.637 | 716 | 285 | 3 | 1 | 713 | 19 | 733 | 0.0 | 886 |
MS.gene42295.t1 | MTR_2g093210 | 58.626 | 684 | 281 | 2 | 31 | 713 | 9 | 691 | 0.0 | 845 |
MS.gene42295.t1 | MTR_2g093210 | 58.485 | 660 | 272 | 2 | 1 | 659 | 19 | 677 | 0.0 | 814 |
MS.gene42295.t1 | MTR_2g093210 | 53.971 | 491 | 224 | 2 | 1 | 490 | 19 | 508 | 0.0 | 554 |
MS.gene42295.t1 | MTR_3g112490 | 83.588 | 262 | 0 | 1 | 746 | 964 | 1 | 262 | 3.54e-148 | 440 |
MS.gene42295.t1 | MTR_6g033365 | 57.447 | 188 | 77 | 3 | 772 | 957 | 1 | 187 | 1.55e-69 | 229 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42295.t1 | AT2G21410 | 70.827 | 713 | 207 | 1 | 1 | 713 | 23 | 734 | 0.0 | 1058 |
MS.gene42295.t1 | AT4G39080 | 71.148 | 714 | 204 | 2 | 1 | 713 | 22 | 734 | 0.0 | 1057 |
MS.gene42295.t1 | AT2G28520 | 59.554 | 717 | 286 | 3 | 1 | 713 | 19 | 735 | 0.0 | 880 |
MS.gene42295.t1 | AT1G75510 | 73.822 | 191 | 49 | 1 | 770 | 960 | 67 | 256 | 1.41e-93 | 297 |
MS.gene42295.t1 | AT3G52270 | 56.021 | 191 | 80 | 3 | 770 | 960 | 83 | 269 | 1.60e-71 | 238 |
MS.gene42295.t1 | AT3G52270 | 53.012 | 83 | 38 | 1 | 770 | 852 | 83 | 164 | 1.51e-25 | 105 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCTTCCTATCTTCGTTTA+TGG | 0.080046 | 3.2:-89790852 | MS.gene42295:CDS |
TCCATTCCGTTTGAACTATT+TGG | 0.108443 | 3.2:-89791883 | MS.gene42295:CDS |
GCGTAAGTTGCGTTTATTTA+AGG | 0.157306 | 3.2:-89794145 | MS.gene42295:CDS |
TTCTATTGATCTAGAAAATT+TGG | 0.182048 | 3.2:-89794070 | MS.gene42295:CDS |
GTATTCTTGAACAGCCTATT+TGG | 0.197201 | 3.2:-89791437 | MS.gene42295:CDS |
TTCAGTAAAGCAGATAAAAT+TGG | 0.203541 | 3.2:-89793543 | MS.gene42295:CDS |
AACAAAATTTGTGATGCTTT+TGG | 0.213249 | 3.2:-89793254 | MS.gene42295:CDS |
CAAAATAAATACCTTAAAAT+TGG | 0.220511 | 3.2:+89784274 | None:intergenic |
CACTCCTCATAATTGTAAAA+TGG | 0.223248 | 3.2:-89791406 | MS.gene42295:CDS |
CGCTGTAATGTTTGGTGATT+GGG | 0.234878 | 3.2:-89792165 | MS.gene42295:CDS |
GGCTGTTCAAGAATACAATT+TGG | 0.237322 | 3.2:+89791444 | None:intergenic |
TCGACAGATTTCTTGTATTC+AGG | 0.238269 | 3.2:+89783588 | None:intergenic |
TATTGACTGTCCATTATTAA+TGG | 0.242494 | 3.2:-89793669 | MS.gene42295:CDS |
CATATTTAGAATGTGATAAA+TGG | 0.248964 | 3.2:+89792762 | None:intergenic |
TCATGGCATATGCTTATTAT+TGG | 0.252181 | 3.2:-89792141 | MS.gene42295:CDS |
AATGAAGATGTCAATTCTAT+TGG | 0.256189 | 3.2:-89791641 | MS.gene42295:CDS |
TTCTTACTTGAAAGAACTTT+TGG | 0.258014 | 3.2:+89791291 | None:intergenic |
CATGAAAACATGGATGATTA+TGG | 0.267501 | 3.2:-89784519 | MS.gene42295:CDS |
TCTAAGTCCAACAGATGATT+TGG | 0.275930 | 3.2:-89791336 | MS.gene42295:CDS |
ATACATCTTTGAACTGAAAA+AGG | 0.292712 | 3.2:+89794628 | None:intergenic |
ATTTAAGGAGCAAATGAAAA+AGG | 0.304205 | 3.2:-89794130 | MS.gene42295:CDS |
AGCAATTTGTTGCAAACAAT+TGG | 0.307815 | 3.2:-89792988 | MS.gene42295:CDS |
CAGCTCTCCCCGATCTCTTC+TGG | 0.310704 | 3.2:+89783904 | None:intergenic |
TATTTGAAAGACAGCCTAAC+TGG | 0.312463 | 3.2:-89783862 | MS.gene42295:CDS |
TTATAACCGGTCTTGTTACT+AGG | 0.312976 | 3.2:-89793517 | MS.gene42295:CDS |
ATACAATTTGGGGAACAAAT+TGG | 0.314145 | 3.2:+89791456 | None:intergenic |
CTCCGTGTGCCATGCCATTT+AGG | 0.315514 | 3.2:+89791691 | None:intergenic |
AGCTTCCTATCTTCGTTTAT+GGG | 0.320291 | 3.2:-89790851 | MS.gene42295:CDS |
TCAGTAAAGCAGATAAAATT+GGG | 0.320724 | 3.2:-89793542 | MS.gene42295:CDS |
CAAGAAATTGTAGACGCATA+TGG | 0.321767 | 3.2:-89792447 | MS.gene42295:CDS |
CATTTGGCGTAGATCCTAAA+TGG | 0.329997 | 3.2:-89791705 | MS.gene42295:CDS |
CTTTAATTCTACAATTCTTT+CGG | 0.330426 | 3.2:+89793041 | None:intergenic |
ACACACCAGGATTTGCTTCC+TGG | 0.331410 | 3.2:+89792216 | None:intergenic |
TCGCTGTAATGTTTGGTGAT+TGG | 0.333056 | 3.2:-89792166 | MS.gene42295:CDS |
ATTTGAGCAGTGGAATCTTC+TGG | 0.337268 | 3.2:-89792959 | MS.gene42295:intron |
ATATGATTCCAAGATTCATT+TGG | 0.339853 | 3.2:+89791611 | None:intergenic |
TTTGTATCAGTTTGTTTGAC+TGG | 0.345873 | 3.2:+89783932 | None:intergenic |
GCTGTTCAAGAATACAATTT+GGG | 0.359364 | 3.2:+89791445 | None:intergenic |
TATACATGTTCCATTAATAA+TGG | 0.365815 | 3.2:+89793659 | None:intergenic |
CTCTTGAACAAGTTGCTTCA+AGG | 0.372812 | 3.2:+89783838 | None:intergenic |
AGGATTTGCTTCCTGGTACT+TGG | 0.373271 | 3.2:+89792223 | None:intergenic |
TATGATTCCAAGATTCATTT+GGG | 0.373807 | 3.2:+89791612 | None:intergenic |
TTCAGGGATGCTACTACAAT+AGG | 0.384365 | 3.2:-89791754 | MS.gene42295:intron |
TCAAGTAGAGGCAATAGTTC+AGG | 0.392420 | 3.2:-89792532 | MS.gene42295:CDS |
ATCTCTTACCTTGGCGATCT+AGG | 0.395353 | 3.2:-89794651 | MS.gene42295:CDS |
ATAAAATTGGGGTTTATAAC+CGG | 0.396630 | 3.2:-89793530 | MS.gene42295:CDS |
GAAACTAAGCCAACCATTCC+AGG | 0.403360 | 3.2:+89784299 | None:intergenic |
CTAAGTCCAACAGATGATTT+GGG | 0.404472 | 3.2:-89791335 | MS.gene42295:CDS |
TCTCTCGTTGACCATGTTGA+TGG | 0.411005 | 3.2:+89794096 | None:intergenic |
ATCAAATAGGTTAAAAGATG+TGG | 0.412168 | 3.2:-89794177 | MS.gene42295:intron |
GGTGAAAACCAGCTCTTTGT+TGG | 0.412927 | 3.2:-89791314 | MS.gene42295:CDS |
ATGAAGATGTCAATTCTATT+GGG | 0.414653 | 3.2:-89791640 | MS.gene42295:CDS |
TTAGGTTATATTACTATTGT+TGG | 0.418965 | 3.2:-89791188 | MS.gene42295:intron |
GGAGTGAAAGATAGCCAAAT+AGG | 0.420903 | 3.2:+89791423 | None:intergenic |
GAATTCTATTTCGTGCTACT+AGG | 0.420984 | 3.2:-89793472 | MS.gene42295:CDS |
CAGAAGAGATCGGGGAGAGC+TGG | 0.423650 | 3.2:-89783903 | MS.gene42295:CDS |
CAGCTCATAAGTTCCTTGAT+TGG | 0.425122 | 3.2:+89783614 | None:intergenic |
AAGAAATTGTAGACGCATAT+GGG | 0.426376 | 3.2:-89792446 | MS.gene42295:intron |
ATTCTATTGTATGTATAAGT+TGG | 0.428985 | 3.2:+89790899 | None:intergenic |
ACTTGGAGACATATTAGAAA+TGG | 0.433033 | 3.2:-89791983 | MS.gene42295:CDS |
ATTGATCATTCCAATTGAAT+CGG | 0.434902 | 3.2:-89794685 | MS.gene42295:CDS |
GGAGTATCCCAAATGAATCT+TGG | 0.435333 | 3.2:-89791619 | MS.gene42295:CDS |
GATCGATGAGCCGATTCAAT+TGG | 0.436497 | 3.2:+89794675 | None:intergenic |
ATGTTGTTTCTTCAAGAGAA+AGG | 0.437840 | 3.2:+89791129 | None:intergenic |
TCAATAGACCCTTCAAAAGT+TGG | 0.440735 | 3.2:+89793686 | None:intergenic |
GTGCGCGACACTTATCCATT+TGG | 0.445671 | 3.2:-89791721 | MS.gene42295:CDS |
AATTCTATTTCGTGCTACTA+GGG | 0.446400 | 3.2:-89793471 | MS.gene42295:CDS |
TCAAATAGGTTAAAAGATGT+GGG | 0.447595 | 3.2:-89794176 | MS.gene42295:intron |
AAAGAGAACCAGAAGAGATC+GGG | 0.447938 | 3.2:-89783912 | MS.gene42295:CDS |
GTTGAACTTCAAGCTCTCTC+TGG | 0.448824 | 3.2:+89793708 | None:intergenic |
CCTACTCTTTGATCTACAAT+GGG | 0.450668 | 3.2:-89790999 | MS.gene42295:CDS |
CATGTTCTAGATCCTTTGTC+AGG | 0.453259 | 3.2:-89793413 | MS.gene42295:CDS |
AACTTCAAGCTCTCTCTGGC+GGG | 0.460694 | 3.2:+89793712 | None:intergenic |
TTCTTCAAGAGAAAGGGCTT+TGG | 0.461252 | 3.2:+89791136 | None:intergenic |
GAGGGCCCATAAACGAAGAT+AGG | 0.461762 | 3.2:+89790846 | None:intergenic |
TTAAAGACAACCATTGATGT+AGG | 0.463823 | 3.2:-89793024 | MS.gene42295:CDS |
AGTTGCTTCAAGGCCCAGTT+AGG | 0.465380 | 3.2:+89783848 | None:intergenic |
TGTTGTTAATTGCAGAAACT+TGG | 0.465763 | 3.2:-89792000 | MS.gene42295:intron |
ATCTTCGTTTATGGGCCCTC+AGG | 0.469823 | 3.2:-89790843 | MS.gene42295:intron |
GGATGCTACTACAATAGGTT+TGG | 0.469912 | 3.2:-89791749 | MS.gene42295:CDS |
TTGAAAACAACATAAACATA+TGG | 0.470037 | 3.2:-89791564 | MS.gene42295:intron |
TAGATTTCTTTGTCCTCTCC+CGG | 0.471186 | 3.2:+89784487 | None:intergenic |
ATGTTTGGTGATTGGGGTCA+TGG | 0.475527 | 3.2:-89792158 | MS.gene42295:CDS |
CATTTAGGATCTACGCCAAA+TGG | 0.477514 | 3.2:+89791706 | None:intergenic |
CGCTGAAATCAAACTCCTCA+TGG | 0.478028 | 3.2:+89790935 | None:intergenic |
CACCAAACATTACAGCGAAA+AGG | 0.483279 | 3.2:+89792171 | None:intergenic |
TGTTGTTTCTTCAAGAGAAA+GGG | 0.483549 | 3.2:+89791130 | None:intergenic |
CATCGATCCATCTCTTACCT+TGG | 0.485763 | 3.2:-89794660 | MS.gene42295:CDS |
AATAAAAGAGGCGCCAATCA+AGG | 0.487240 | 3.2:-89783627 | MS.gene42295:CDS |
AAGCTCTCTCTGGCGGGTTG+CGG | 0.488042 | 3.2:+89793718 | None:intergenic |
CTATTTGGACAATCTGCCTA+TGG | 0.489161 | 3.2:-89791868 | MS.gene42295:CDS |
GAAGCATAGGTCTGTTGGAA+TGG | 0.489379 | 3.2:+89794434 | None:intergenic |
ACGCACATGAGGCCAATGCC+TGG | 0.492472 | 3.2:-89784317 | MS.gene42295:CDS |
TCCAAATAGTTCAAACGGAA+TGG | 0.495363 | 3.2:+89791882 | None:intergenic |
AATGTCTCCTTGCAGAAGGC+TGG | 0.495741 | 3.2:-89792717 | MS.gene42295:CDS |
TGAATTAATCTCAATTAGCT+CGG | 0.496624 | 3.2:+89793936 | None:intergenic |
GATTGTCCAAATAGTTCAAA+CGG | 0.500166 | 3.2:+89791877 | None:intergenic |
AGATCCTTTGTCAGGAGAGA+AGG | 0.502764 | 3.2:-89793405 | MS.gene42295:intron |
CAGTTTACAATGGAGATGTC+TGG | 0.505356 | 3.2:-89786416 | MS.gene42295:CDS |
AAGTAGCGGTGGTTCAAACT+TGG | 0.506657 | 3.2:-89788017 | MS.gene42295:CDS |
CCTGTGAAGCATAGGTCTGT+TGG | 0.509382 | 3.2:+89794429 | None:intergenic |
GAGATATATTATTATGATGA+TGG | 0.510661 | 3.2:-89791950 | MS.gene42295:CDS |
GGTGACAAGGTTGCAATGGA+AGG | 0.512352 | 3.2:-89784576 | MS.gene42295:CDS |
GAACTTCAAGCTCTCTCTGG+CGG | 0.513046 | 3.2:+89793711 | None:intergenic |
TATTGATCTAGAAAATTTGG+AGG | 0.515471 | 3.2:-89794067 | MS.gene42295:intron |
TATAACCGGTCTTGTTACTA+GGG | 0.516391 | 3.2:-89793516 | MS.gene42295:CDS |
CAAAGAGAACCAGAAGAGAT+CGG | 0.521004 | 3.2:-89783913 | MS.gene42295:CDS |
TGTAGGATCGCGACATCCAT+AGG | 0.523119 | 3.2:+89791852 | None:intergenic |
AAGTACCAGGAAGCAAATCC+TGG | 0.525177 | 3.2:-89792221 | MS.gene42295:CDS |
TCCTACTCTTTGATCTACAA+TGG | 0.526141 | 3.2:-89791000 | MS.gene42295:CDS |
ATGGAAAATTGTGCCGGGAG+AGG | 0.527049 | 3.2:-89784500 | MS.gene42295:CDS |
ATGGAAGATGAAAACAGTTA+CGG | 0.527896 | 3.2:-89788043 | MS.gene42295:CDS |
GACATCGAAGGCAGAGAGAT+CGG | 0.529923 | 3.2:-89787993 | MS.gene42295:intron |
CCAACAGACCTATGCTTCAC+AGG | 0.533446 | 3.2:-89794429 | MS.gene42295:intron |
AAGCCAACCATTCCAGGCAT+TGG | 0.534227 | 3.2:+89784305 | None:intergenic |
TTTACTCAAGTCATCTGAGA+AGG | 0.535285 | 3.2:+89793217 | None:intergenic |
TTTAGGTGACAAGGTTGCAA+TGG | 0.535468 | 3.2:-89784580 | MS.gene42295:intron |
ATAATTGTAAAATGGTGCAC+TGG | 0.535769 | 3.2:-89791398 | MS.gene42295:CDS |
CGAAATAGAATTCTTTCGAA+AGG | 0.537677 | 3.2:+89793482 | None:intergenic |
CATACAATAGAATTTGTGCT+TGG | 0.540924 | 3.2:-89790889 | MS.gene42295:CDS |
TTGTGAATACCACGTGACTC+TGG | 0.541621 | 3.2:+89790961 | None:intergenic |
AAGCATAGGTCTGTTGGAAT+GGG | 0.545226 | 3.2:+89794435 | None:intergenic |
TTGTGTGTATACAATAAAAG+AGG | 0.555378 | 3.2:-89783639 | MS.gene42295:CDS |
AGATCGATCAAGAATCAAGA+TGG | 0.555997 | 3.2:-89788062 | MS.gene42295:CDS |
ATGATGCAAACCTACATCAA+TGG | 0.557963 | 3.2:+89793014 | None:intergenic |
TGACAGAATTGCCAAGTACC+AGG | 0.558993 | 3.2:-89792234 | MS.gene42295:intron |
TTGGCCTCATGTGCGTTCCA+CGG | 0.560162 | 3.2:+89784324 | None:intergenic |
ATAATTATGTCAGTTTACAA+TGG | 0.563019 | 3.2:-89786426 | MS.gene42295:intron |
TTGGATATCAATTTGAGCAG+TGG | 0.566788 | 3.2:-89792969 | MS.gene42295:CDS |
TGGCACTCATTTCAGTACCA+TGG | 0.568747 | 3.2:-89791168 | MS.gene42295:CDS |
TATAGGTACCTGTGAAGCAT+AGG | 0.569643 | 3.2:+89794421 | None:intergenic |
AGTATTGATGCGAGCAACCG+TGG | 0.569989 | 3.2:-89792565 | MS.gene42295:CDS |
ATCAATTGAACAAGTTGCAT+AGG | 0.570855 | 3.2:+89794702 | None:intergenic |
AACATTACAGCGAAAAGGAA+AGG | 0.574650 | 3.2:+89792176 | None:intergenic |
AACAGTTACGGTGGAAGTAG+CGG | 0.579345 | 3.2:-89788031 | MS.gene42295:CDS |
TACTTGAGAGTTACAGTCCA+CGG | 0.579726 | 3.2:+89792548 | None:intergenic |
GGCTTTGGTAATAACATCCA+TGG | 0.580963 | 3.2:+89791151 | None:intergenic |
AGGCCAATGCCTGGAATGGT+TGG | 0.582117 | 3.2:-89784308 | MS.gene42295:CDS |
TCAACATGGTCAACGAGAGA+TGG | 0.582556 | 3.2:-89794093 | MS.gene42295:CDS |
AAGAGATCGGGGAGAGCTGG+AGG | 0.583017 | 3.2:-89783900 | MS.gene42295:CDS |
AAGAAATGTCTCCTTGCAGA+AGG | 0.583352 | 3.2:-89792721 | MS.gene42295:CDS |
ATTCTATTTCGTGCTACTAG+GGG | 0.585573 | 3.2:-89793470 | MS.gene42295:CDS |
ATGATTATGGAAAATTGTGC+CGG | 0.587668 | 3.2:-89784506 | MS.gene42295:CDS |
ATCCTAAATGGCATGGCACA+CGG | 0.589895 | 3.2:-89791693 | MS.gene42295:CDS |
TAGATCGCCAAGGTAAGAGA+TGG | 0.589934 | 3.2:+89794653 | None:intergenic |
AAAATGGTGCACTGGATCAC+AGG | 0.590090 | 3.2:-89791390 | MS.gene42295:CDS |
CCACGTGACTCTGGTTCAAG+AGG | 0.590260 | 3.2:+89790970 | None:intergenic |
GGCGTAGATCCTAAATGGCA+TGG | 0.594393 | 3.2:-89791700 | MS.gene42295:CDS |
AATCAAAACCACCTGCATGT+AGG | 0.594477 | 3.2:+89791835 | None:intergenic |
TTACTCAAGTCATCTGAGAA+GGG | 0.598455 | 3.2:+89793218 | None:intergenic |
CATGAGGCCAATGCCTGGAA+TGG | 0.600183 | 3.2:-89784312 | MS.gene42295:CDS |
ATTTGAAAGACAGCCTAACT+GGG | 0.604731 | 3.2:-89783861 | MS.gene42295:CDS |
CAGTAAAGCAGATAAAATTG+GGG | 0.611660 | 3.2:-89793541 | MS.gene42295:CDS |
ATGACCGTGGAACGCACATG+AGG | 0.615692 | 3.2:-89784328 | MS.gene42295:CDS |
GATGTCGCGATCCTACATGC+AGG | 0.623019 | 3.2:-89791846 | MS.gene42295:intron |
GTGACAAGGTTGCAATGGAA+GGG | 0.623466 | 3.2:-89784575 | MS.gene42295:CDS |
CGAACATAGGGAGTAGGTGA+AGG | 0.627364 | 3.2:-89788094 | MS.gene42295:intron |
AACTCTTGTAGGATAAGAAG+AGG | 0.627476 | 3.2:-89783961 | MS.gene42295:intron |
GTAACCTTCTCTCCTGACAA+AGG | 0.627927 | 3.2:+89793401 | None:intergenic |
TGATTATGGAAAATTGTGCC+GGG | 0.629025 | 3.2:-89784505 | MS.gene42295:CDS |
TTCAAACTTGGAGACATCGA+AGG | 0.637014 | 3.2:-89788005 | MS.gene42295:CDS |
CAAATATATCTCCATCAACA+TGG | 0.637172 | 3.2:-89794107 | MS.gene42295:CDS |
CAAATAGGTTAAAAGATGTG+GGG | 0.638472 | 3.2:-89794175 | MS.gene42295:intron |
AAGAGAACCAGAAGAGATCG+GGG | 0.640560 | 3.2:-89783911 | MS.gene42295:CDS |
GAAGCCACGTCATGAAAACA+TGG | 0.640897 | 3.2:-89784529 | MS.gene42295:CDS |
GCTGTAATGTTTGGTGATTG+GGG | 0.649165 | 3.2:-89792164 | MS.gene42295:CDS |
AAGATTATTGCTGATGACCG+TGG | 0.649545 | 3.2:-89784341 | MS.gene42295:CDS |
CCCATTGTAGATCAAAGAGT+AGG | 0.649812 | 3.2:+89790999 | None:intergenic |
ATCTTCTCTGAGACAAGCGA+AGG | 0.651215 | 3.2:-89786326 | MS.gene42295:intron |
GTGATGATTGTGTACACACC+AGG | 0.653396 | 3.2:+89792203 | None:intergenic |
GGACTGTAACTCTCAAGTAG+AGG | 0.654482 | 3.2:-89792544 | MS.gene42295:CDS |
CAGGACACCAGCCTTCTGCA+AGG | 0.658702 | 3.2:+89792710 | None:intergenic |
CTGTTCAAGAATACAATTTG+GGG | 0.666631 | 3.2:+89791446 | None:intergenic |
AGTTACGGTGGAAGTAGCGG+TGG | 0.667128 | 3.2:-89788028 | MS.gene42295:CDS |
CCTCTTGAACCAGAGTCACG+TGG | 0.672253 | 3.2:-89790970 | MS.gene42295:CDS |
GAAGATGAAAACAGTTACGG+TGG | 0.674861 | 3.2:-89788040 | MS.gene42295:CDS |
CACAAACGAACATAGGGAGT+AGG | 0.674992 | 3.2:-89788100 | MS.gene42295:intron |
GTCTCAGAGAAGATGCACAT+AGG | 0.676365 | 3.2:+89786335 | None:intergenic |
TGAGGAGTTTGATTTCAGCG+AGG | 0.723862 | 3.2:-89790932 | MS.gene42295:CDS |
ACAATTTCAGATGATGACAG+AGG | 0.727416 | 3.2:-89793195 | MS.gene42295:intron |
TCAAGAGACTGATCAACCTG+CGG | 0.732985 | 3.2:-89783822 | MS.gene42295:intron |
CTACTCTTTGATCTACAATG+GGG | 0.740978 | 3.2:-89790998 | MS.gene42295:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 89783569 | 89794721 | 89783569 | ID=MS.gene42295 |
chr3.2 | mRNA | 89783569 | 89794721 | 89783569 | ID=MS.gene42295.t1;Parent=MS.gene42295 |
chr3.2 | exon | 89794632 | 89794721 | 89794632 | ID=MS.gene42295.t1.exon1;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89794632 | 89794721 | 89794632 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89794430 | 89794474 | 89794430 | ID=MS.gene42295.t1.exon2;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89794430 | 89794474 | 89794430 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89794068 | 89794190 | 89794068 | ID=MS.gene42295.t1.exon3;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89794068 | 89794190 | 89794068 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89793873 | 89793980 | 89793873 | ID=MS.gene42295.t1.exon4;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89793873 | 89793980 | 89793873 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89793664 | 89793774 | 89793664 | ID=MS.gene42295.t1.exon5;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89793664 | 89793774 | 89793664 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89793406 | 89793579 | 89793406 | ID=MS.gene42295.t1.exon6;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89793406 | 89793579 | 89793406 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89793196 | 89793333 | 89793196 | ID=MS.gene42295.t1.exon7;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89793196 | 89793333 | 89793196 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89792960 | 89793067 | 89792960 | ID=MS.gene42295.t1.exon8;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89792960 | 89793067 | 89792960 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89792693 | 89792800 | 89792693 | ID=MS.gene42295.t1.exon9;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89792693 | 89792800 | 89792693 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89792447 | 89792595 | 89792447 | ID=MS.gene42295.t1.exon10;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89792447 | 89792595 | 89792447 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89792097 | 89792250 | 89792097 | ID=MS.gene42295.t1.exon11;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89792097 | 89792250 | 89792097 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89791847 | 89792007 | 89791847 | ID=MS.gene42295.t1.exon12;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89791847 | 89792007 | 89791847 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89791565 | 89791771 | 89791565 | ID=MS.gene42295.t1.exon13;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89791565 | 89791771 | 89791565 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89791298 | 89791481 | 89791298 | ID=MS.gene42295.t1.exon14;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89791298 | 89791481 | 89791298 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89791123 | 89791206 | 89791123 | ID=MS.gene42295.t1.exon15;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89791123 | 89791206 | 89791123 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89790844 | 89791037 | 89790844 | ID=MS.gene42295.t1.exon16;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89790844 | 89791037 | 89790844 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89790593 | 89790647 | 89790593 | ID=MS.gene42295.t1.exon17;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89790593 | 89790647 | 89790593 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89787994 | 89788107 | 89787994 | ID=MS.gene42295.t1.exon18;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89787994 | 89788107 | 89787994 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89786327 | 89786435 | 89786327 | ID=MS.gene42295.t1.exon19;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89786327 | 89786435 | 89786327 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89784464 | 89784597 | 89784464 | ID=MS.gene42295.t1.exon20;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89784464 | 89784597 | 89784464 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89784286 | 89784360 | 89784286 | ID=MS.gene42295.t1.exon21;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89784286 | 89784360 | 89784286 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89783823 | 89783972 | 89783823 | ID=MS.gene42295.t1.exon22;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89783823 | 89783972 | 89783823 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
chr3.2 | exon | 89783569 | 89783688 | 89783569 | ID=MS.gene42295.t1.exon23;Parent=MS.gene42295.t1 |
chr3.2 | CDS | 89783569 | 89783688 | 89783569 | ID=cds.MS.gene42295.t1;Parent=MS.gene42295.t1 |
Gene Sequence |
Protein sequence |