Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97613.t1 | XP_003621014.1 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.60E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97613.t1 | Q944L7 | 61.6 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.4e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97613.t1 | G7KWQ2 | 98.7 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.1e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene97613 | 0.853303 | 2.61E-61 | -1.69E-46 |
| MS.gene049452 | MS.gene97613 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene97613 | 0.835932 | 1.26E-56 | -1.69E-46 |
| MS.gene050105 | MS.gene97613 | 0.806272 | 8.92E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene97613 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene050571 | MS.gene97613 | 0.804213 | 2.41E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene97613 | 0.864404 | 1.25E-64 | -1.69E-46 |
| MS.gene050941 | MS.gene97613 | 0.814212 | 1.73E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene97613 | 0.809075 | 2.26E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene97613 | 0.806392 | 8.41E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene97613 | 0.83524 | 1.88E-56 | -1.69E-46 |
| MS.gene051597 | MS.gene97613 | 0.837834 | 4.11E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene97613 | 0.836095 | 1.14E-56 | -1.69E-46 |
| MS.gene052108 | MS.gene97613 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene97613 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene052500 | MS.gene97613 | 0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene97613 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene052855 | MS.gene97613 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene97613 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene97613 | 0.828966 | 6.70E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene97613 | 0.83548 | 1.64E-56 | -1.69E-46 |
| MS.gene053298 | MS.gene97613 | 0.820491 | 6.67E-53 | -1.69E-46 |
| MS.gene053564 | MS.gene97613 | 0.823125 | 1.64E-53 | -1.69E-46 |
| MS.gene053726 | MS.gene97613 | 0.823389 | 1.42E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene97613 | 0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene97613 | 0.829715 | 4.41E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene97613 | 0.828543 | 8.48E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene97613 | 0.810912 | 9.10E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene97613 | 0.82116 | 4.68E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene97613 | 0.845082 | 5.07E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene97613 | 0.850797 | 1.35E-60 | -1.69E-46 |
| MS.gene055147 | MS.gene97613 | 0.811012 | 8.66E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene97613 | 0.829053 | 6.38E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene97613 | 0.854086 | 1.56E-61 | -1.69E-46 |
| MS.gene055311 | MS.gene97613 | 0.801925 | 7.15E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene97613 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene97613 | 0.80957 | 1.77E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene97613 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene055841 | MS.gene97613 | 0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene97613 | 0.815897 | 7.30E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene97613 | 0.821304 | 4.34E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene97613 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene97613 | 0.801657 | 8.12E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene97613 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene97613 | 0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene97613 | 0.813638 | 2.31E-51 | -1.69E-46 |
| MS.gene056831 | MS.gene97613 | 0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene97613 | 0.827596 | 1.43E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene97613 | 0.820106 | 8.17E-53 | -1.69E-46 |
| MS.gene057155 | MS.gene97613 | 0.821054 | 4.95E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene97613 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene057890 | MS.gene97613 | -0.806146 | 9.48E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene97613 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene97613 | -0.810388 | 1.18E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene97613 | 0.820032 | 8.50E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene97613 | 0.802409 | 5.69E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene97613 | -0.81845 | 1.95E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene97613 | 0.815085 | 1.11E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene97613 | 0.806438 | 8.22E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene97613 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene97613 | 0.811594 | 6.48E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene97613 | 0.820003 | 8.63E-53 | -1.69E-46 |
| MS.gene060520 | MS.gene97613 | 0.800018 | 1.75E-48 | -1.69E-46 |
| MS.gene060840 | MS.gene97613 | 0.808992 | 2.36E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene97613 | 0.806525 | 7.89E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene97613 | 0.810672 | 1.03E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene97613 | 0.809181 | 2.15E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene97613 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene97613 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene97613 | 0.820473 | 6.73E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene97613 | 0.828461 | 8.88E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97613.t1 | MTR_7g006040 | 98.684 | 228 | 3 | 0 | 1 | 228 | 167 | 394 | 1.20e-166 | 465 |
| MS.gene97613.t1 | MTR_8g064720 | 70.312 | 192 | 52 | 3 | 1 | 188 | 187 | 377 | 1.34e-86 | 262 |
| MS.gene97613.t1 | MTR_5g072900 | 38.824 | 170 | 89 | 5 | 33 | 189 | 219 | 386 | 8.90e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97613.t1 | AT1G18480 | 61.638 | 232 | 79 | 5 | 1 | 228 | 166 | 391 | 1.23e-91 | 275 |
| MS.gene97613.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 204 | 372 | 4.45e-21 | 90.9 |
| MS.gene97613.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 208 | 376 | 4.60e-21 | 90.9 |
| MS.gene97613.t1 | AT1G07010 | 36.471 | 170 | 95 | 4 | 33 | 190 | 219 | 387 | 5.97e-21 | 90.5 |
Find 70 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGGGTTGCGGCTTTA+AGG | 0.182522 | 7.4:+93551264 | MS.gene97613:CDS |
| TTGAAAGAACATGTTGATTA+TGG | 0.215908 | 7.4:+93551374 | MS.gene97613:CDS |
| TGAGGTTAGTGATTGGTATA+AGG | 0.246230 | 7.4:+93551415 | MS.gene97613:CDS |
| AAGAGTTTCATGATGGGTTT+AGG | 0.248900 | 7.4:+93551243 | MS.gene97613:CDS |
| TGGTGTTAAGAGGATGATTA+TGG | 0.249368 | 7.4:+93551562 | MS.gene97613:CDS |
| TGGTGGTTTGCCCGAGGTTT+TGG | 0.263789 | 7.4:+93551670 | MS.gene97613:CDS |
| ACGTGGCGTTTCGTGGTGTT+AGG | 0.288942 | 7.4:+93551219 | MS.gene97613:CDS |
| TTATTCATCTGATTATATAA+AGG | 0.310568 | 7.4:-93551731 | None:intergenic |
| TAATGGTGTCTGCGAAAATA+AGG | 0.312538 | 7.4:+93551610 | MS.gene97613:CDS |
| TACACAAAATGTTACTGTTT+TGG | 0.322237 | 7.4:+93551316 | MS.gene97613:CDS |
| TTTATATAATCAGATGAATA+AGG | 0.349298 | 7.4:+93551733 | MS.gene97613:CDS |
| GACAATAAGGCGGCGAAAAC+CGG | 0.357356 | 7.4:-93551451 | None:intergenic |
| GAGGTTAGTGATTGGTATAA+GGG | 0.359259 | 7.4:+93551416 | MS.gene97613:CDS |
| GATTGGTATAAGGGTTTGTT+TGG | 0.360244 | 7.4:+93551425 | MS.gene97613:CDS |
| GGGAAGGTGGAAGAAGGGTT+TGG | 0.362537 | 7.4:+93551770 | MS.gene97613:CDS |
| CGAATGGACCGATTTCAAAA+AGG | 0.363226 | 7.4:+93551288 | MS.gene97613:CDS |
| ATTCAGAAGGAAGGGATTAA+TGG | 0.366442 | 7.4:+93551593 | MS.gene97613:CDS |
| AGAGTTTCATGATGGGTTTA+GGG | 0.373309 | 7.4:+93551244 | MS.gene97613:CDS |
| GCATTCCTTCCCCGACAATA+AGG | 0.375199 | 7.4:-93551464 | None:intergenic |
| TTCATGATGGGTTTAGGGCT+AGG | 0.377495 | 7.4:+93551249 | MS.gene97613:CDS |
| GGGGAAGGAATGCACTTGTT+TGG | 0.383176 | 7.4:+93551474 | MS.gene97613:CDS |
| TATGGGTTGGAGAAGATTAA+TGG | 0.389368 | 7.4:+93551392 | MS.gene97613:CDS |
| TGAAAGAACATGTTGATTAT+GGG | 0.411575 | 7.4:+93551375 | MS.gene97613:CDS |
| ATAAGGGTTTGTTTGGTAAC+CGG | 0.411872 | 7.4:+93551432 | MS.gene97613:CDS |
| TCATGATGGGTTTAGGGCTA+GGG | 0.424497 | 7.4:+93551250 | MS.gene97613:CDS |
| CGACGATTCCTGGTGTTAAG+AGG | 0.425093 | 7.4:+93551552 | MS.gene97613:CDS |
| ATGTAAAGGTTTGGAAGAAA+AGG | 0.436989 | 7.4:+93551172 | MS.gene97613:CDS |
| CGTGGCGTTTCGTGGTGTTA+GGG | 0.450367 | 7.4:+93551220 | MS.gene97613:CDS |
| CGCCGCCTTATTGTCGGGGA+AGG | 0.455393 | 7.4:+93551459 | MS.gene97613:CDS |
| AATGTTCACGTGGCGTTTCG+TGG | 0.456234 | 7.4:+93551212 | MS.gene97613:CDS |
| TCTGCGAAAATAAGGCGATT+AGG | 0.459167 | 7.4:+93551618 | MS.gene97613:CDS |
| GATGTTGGGAAGGTGGAAGA+AGG | 0.466879 | 7.4:+93551764 | MS.gene97613:CDS |
| AATAAGGAAAATGTGGATGT+TGG | 0.471510 | 7.4:+93551749 | MS.gene97613:CDS |
| TGGGTTTAGGGCTAGGGTTG+CGG | 0.472943 | 7.4:+93551256 | MS.gene97613:CDS |
| GGTGTTAAGAGGATGATTAT+GGG | 0.476200 | 7.4:+93551563 | MS.gene97613:CDS |
| AAATGTGGATGTTGGGAAGG+TGG | 0.504316 | 7.4:+93551757 | MS.gene97613:CDS |
| TCAGATGAATAAGGAAAATG+TGG | 0.505988 | 7.4:+93551742 | MS.gene97613:CDS |
| GTTAGGGAAGAGTTTCATGA+TGG | 0.506126 | 7.4:+93551236 | MS.gene97613:CDS |
| ATGTTGGGAAGGTGGAAGAA+GGG | 0.512967 | 7.4:+93551765 | MS.gene97613:CDS |
| AGATTGACCGTTATGGGGTG+AGG | 0.524683 | 7.4:+93551693 | MS.gene97613:CDS |
| GCCTTGACTTCCACTTGCCT+AGG | 0.528320 | 7.4:-93551821 | None:intergenic |
| GCAAGTGGAAGTCAAGGCTT+AGG | 0.533119 | 7.4:+93551826 | MS.gene97613:CDS |
| ATGTCGAAAGGATGCGGTGG+TGG | 0.533822 | 7.4:+93551653 | MS.gene97613:CDS |
| CGGTCAATCTCCAAAACCTC+GGG | 0.534492 | 7.4:-93551680 | None:intergenic |
| TTAATGGTGAGGTTAGTGAT+TGG | 0.539710 | 7.4:+93551408 | MS.gene97613:CDS |
| ATAAGGAAAATGTGGATGTT+GGG | 0.548289 | 7.4:+93551750 | MS.gene97613:CDS |
| ACCTAGGCAAGTGGAAGTCA+AGG | 0.549753 | 7.4:+93551820 | MS.gene97613:CDS |
| TTAGGGAAGAGTTTCATGAT+GGG | 0.558605 | 7.4:+93551237 | MS.gene97613:CDS |
| ATGCGGTGGTGGTTTGCCCG+AGG | 0.563566 | 7.4:+93551664 | MS.gene97613:CDS |
| TTGTTGCTTAATAATCAAGA+TGG | 0.574078 | 7.4:+93551794 | MS.gene97613:CDS |
| ATCGATGTTGGTATGTCGAA+AGG | 0.575221 | 7.4:+93551641 | MS.gene97613:CDS |
| GTTGGAGAAGATTAATGGTG+AGG | 0.579243 | 7.4:+93551397 | MS.gene97613:CDS |
| GGGCATACGATTCAGAAGGA+AGG | 0.584494 | 7.4:+93551584 | MS.gene97613:CDS |
| TCAATATCCTCACCCCATAA+CGG | 0.588832 | 7.4:-93551700 | None:intergenic |
| ACGGTCAATCTCCAAAACCT+CGG | 0.600316 | 7.4:-93551681 | None:intergenic |
| GGCATACGATTCAGAAGGAA+GGG | 0.601131 | 7.4:+93551585 | MS.gene97613:CDS |
| AGAACATGTTGATTATGGGT+TGG | 0.606486 | 7.4:+93551379 | MS.gene97613:CDS |
| AAGGCGATTAGGATCGATGT+TGG | 0.608483 | 7.4:+93551629 | MS.gene97613:CDS |
| GGAAAATGTGGATGTTGGGA+AGG | 0.610345 | 7.4:+93551754 | MS.gene97613:CDS |
| ATAATCATCCTCTTAACACC+AGG | 0.619952 | 7.4:-93551560 | None:intergenic |
| GTTGCGGCTTTAAGGCCGAA+TGG | 0.620496 | 7.4:+93551272 | MS.gene97613:CDS |
| TTTGGAGATTGACCGTTATG+GGG | 0.621026 | 7.4:+93551688 | MS.gene97613:CDS |
| TATGGGGCATACGATTCAGA+AGG | 0.628721 | 7.4:+93551580 | MS.gene97613:CDS |
| ATAATCAAGATGGTAGACCT+AGG | 0.629740 | 7.4:+93551804 | MS.gene97613:CDS |
| GTGTTAAGAGGATGATTATG+GGG | 0.631883 | 7.4:+93551564 | MS.gene97613:CDS |
| AGATGGTAGACCTAGGCAAG+TGG | 0.641426 | 7.4:+93551811 | MS.gene97613:CDS |
| GTTGGTATGTCGAAAGGATG+CGG | 0.642403 | 7.4:+93551647 | MS.gene97613:CDS |
| TTCCTTCCCCGACAATAAGG+CGG | 0.649751 | 7.4:-93551461 | None:intergenic |
| TCCATTAGAAAATGTTCACG+TGG | 0.684935 | 7.4:+93551202 | MS.gene97613:CDS |
| GGTATGTCGAAAGGATGCGG+TGG | 0.743976 | 7.4:+93551650 | MS.gene97613:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATCTGATTATATAA+AGG | - | chr7.4:93551734-93551753 | None:intergenic | 15.0% |
| !! | TTTATATAATCAGATGAATA+AGG | + | chr7.4:93551733-93551752 | MS.gene97613:CDS | 15.0% |
| ! | GAAAAATCTATGTAAAGGTT+TGG | + | chr7.4:93551163-93551182 | MS.gene97613:CDS | 25.0% |
| !! | TACACAAAATGTTACTGTTT+TGG | + | chr7.4:93551316-93551335 | MS.gene97613:CDS | 25.0% |
| !! | TGAAAGAACATGTTGATTAT+GGG | + | chr7.4:93551375-93551394 | MS.gene97613:CDS | 25.0% |
| !! | TTGAAAGAACATGTTGATTA+TGG | + | chr7.4:93551374-93551393 | MS.gene97613:CDS | 25.0% |
| !! | TTGTTGCTTAATAATCAAGA+TGG | + | chr7.4:93551794-93551813 | MS.gene97613:CDS | 25.0% |
| !!! | GTAAAGAACCTTTTTGAAAT+CGG | - | chr7.4:93551299-93551318 | None:intergenic | 25.0% |
| AATAAGGAAAATGTGGATGT+TGG | + | chr7.4:93551749-93551768 | MS.gene97613:CDS | 30.0% | |
| ATAAGGAAAATGTGGATGTT+GGG | + | chr7.4:93551750-93551769 | MS.gene97613:CDS | 30.0% | |
| ATGTAAAGGTTTGGAAGAAA+AGG | + | chr7.4:93551172-93551191 | MS.gene97613:CDS | 30.0% | |
| TCAGATGAATAAGGAAAATG+TGG | + | chr7.4:93551742-93551761 | MS.gene97613:CDS | 30.0% | |
| ! | GATTCAATTTTTGTTCATGG+TGG | + | chr7.4:93551347-93551366 | MS.gene97613:CDS | 30.0% |
| ! | GGCTTAGAAAATTTTCAGAT+GGG | + | chr7.4:93551495-93551514 | MS.gene97613:CDS | 30.0% |
| ! | GGTGATTCAATTTTTGTTCA+TGG | + | chr7.4:93551344-93551363 | MS.gene97613:CDS | 30.0% |
| ! | TGGCTTAGAAAATTTTCAGA+TGG | + | chr7.4:93551494-93551513 | MS.gene97613:CDS | 30.0% |
| !!! | AATGTTACTGTTTTGGTAGT+TGG | + | chr7.4:93551323-93551342 | MS.gene97613:CDS | 30.0% |
| ATAATCAAGATGGTAGACCT+AGG | + | chr7.4:93551804-93551823 | MS.gene97613:CDS | 35.0% | |
| ATAATCATCCTCTTAACACC+AGG | - | chr7.4:93551563-93551582 | None:intergenic | 35.0% | |
| ATTCAGAAGGAAGGGATTAA+TGG | + | chr7.4:93551593-93551612 | MS.gene97613:CDS | 35.0% | |
| GAGGTTAGTGATTGGTATAA+GGG | + | chr7.4:93551416-93551435 | MS.gene97613:CDS | 35.0% | |
| GGTGTTAAGAGGATGATTAT+GGG | + | chr7.4:93551563-93551582 | MS.gene97613:CDS | 35.0% | |
| GTGTTAAGAGGATGATTATG+GGG | + | chr7.4:93551564-93551583 | MS.gene97613:CDS | 35.0% | |
| TAATGGTGTCTGCGAAAATA+AGG | + | chr7.4:93551610-93551629 | MS.gene97613:CDS | 35.0% | |
| TCCATTAGAAAATGTTCACG+TGG | + | chr7.4:93551202-93551221 | MS.gene97613:CDS | 35.0% | |
| TGAGGTTAGTGATTGGTATA+AGG | + | chr7.4:93551415-93551434 | MS.gene97613:CDS | 35.0% | |
| TTAATGGTGAGGTTAGTGAT+TGG | + | chr7.4:93551408-93551427 | MS.gene97613:CDS | 35.0% | |
| TTAGGGAAGAGTTTCATGAT+GGG | + | chr7.4:93551237-93551256 | MS.gene97613:CDS | 35.0% | |
| ! | AGAACATGTTGATTATGGGT+TGG | + | chr7.4:93551379-93551398 | MS.gene97613:CDS | 35.0% |
| ! | ATAAGGGTTTGTTTGGTAAC+CGG | + | chr7.4:93551432-93551451 | MS.gene97613:CDS | 35.0% |
| ! | GATTGGTATAAGGGTTTGTT+TGG | + | chr7.4:93551425-93551444 | MS.gene97613:CDS | 35.0% |
| ! | TGGTGTTAAGAGGATGATTA+TGG | + | chr7.4:93551562-93551581 | MS.gene97613:CDS | 35.0% |
| !! | AAGAGTTTCATGATGGGTTT+AGG | + | chr7.4:93551243-93551262 | MS.gene97613:CDS | 35.0% |
| !! | AGAGTTTCATGATGGGTTTA+GGG | + | chr7.4:93551244-93551263 | MS.gene97613:CDS | 35.0% |
| !! | TATGGGTTGGAGAAGATTAA+TGG | + | chr7.4:93551392-93551411 | MS.gene97613:CDS | 35.0% |
| !! | TTTTGGAGATTGACCGTTAT+GGG | + | chr7.4:93551687-93551706 | MS.gene97613:CDS | 35.0% |
| !!! | CTTTTTGAAATCGGTCCATT+CGG | - | chr7.4:93551290-93551309 | None:intergenic | 35.0% |
| ATCGATGTTGGTATGTCGAA+AGG | + | chr7.4:93551641-93551660 | MS.gene97613:CDS | 40.0% | |
| GTTAGGGAAGAGTTTCATGA+TGG | + | chr7.4:93551236-93551255 | MS.gene97613:CDS | 40.0% | |
| GTTGGAGAAGATTAATGGTG+AGG | + | chr7.4:93551397-93551416 | MS.gene97613:CDS | 40.0% | |
| TCAATATCCTCACCCCATAA+CGG | - | chr7.4:93551703-93551722 | None:intergenic | 40.0% | |
| TCTGCGAAAATAAGGCGATT+AGG | + | chr7.4:93551618-93551637 | MS.gene97613:CDS | 40.0% | |
| TTTGGAGATTGACCGTTATG+GGG | + | chr7.4:93551688-93551707 | MS.gene97613:CDS | 40.0% | |
| ! | CGAATGGACCGATTTCAAAA+AGG | + | chr7.4:93551288-93551307 | MS.gene97613:CDS | 40.0% |
| ! | GCCACGTGAACATTTTCTAA+TGG | - | chr7.4:93551206-93551225 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTGACCGTTA+TGG | + | chr7.4:93551686-93551705 | MS.gene97613:CDS | 40.0% |
| AAATGTGGATGTTGGGAAGG+TGG | + | chr7.4:93551757-93551776 | MS.gene97613:CDS | 45.0% | |
| AAGGCGATTAGGATCGATGT+TGG | + | chr7.4:93551629-93551648 | MS.gene97613:CDS | 45.0% | |
| ACGGTCAATCTCCAAAACCT+CGG | - | chr7.4:93551684-93551703 | None:intergenic | 45.0% | |
| ATGTTGGGAAGGTGGAAGAA+GGG | + | chr7.4:93551765-93551784 | MS.gene97613:CDS | 45.0% | |
| GGAAAATGTGGATGTTGGGA+AGG | + | chr7.4:93551754-93551773 | MS.gene97613:CDS | 45.0% | |
| GGCATACGATTCAGAAGGAA+GGG | + | chr7.4:93551585-93551604 | MS.gene97613:CDS | 45.0% | |
| GTTGGTATGTCGAAAGGATG+CGG | + | chr7.4:93551647-93551666 | MS.gene97613:CDS | 45.0% | |
| TATGGGGCATACGATTCAGA+AGG | + | chr7.4:93551580-93551599 | MS.gene97613:CDS | 45.0% | |
| ! | CATGTTTTGTCGACGATTCC+TGG | + | chr7.4:93551542-93551561 | MS.gene97613:CDS | 45.0% |
| !! | TCATGATGGGTTTAGGGCTA+GGG | + | chr7.4:93551250-93551269 | MS.gene97613:CDS | 45.0% |
| !! | TTCATGATGGGTTTAGGGCT+AGG | + | chr7.4:93551249-93551268 | MS.gene97613:CDS | 45.0% |
| AATGTTCACGTGGCGTTTCG+TGG | + | chr7.4:93551212-93551231 | MS.gene97613:CDS | 50.0% | |
| ACCTAGGCAAGTGGAAGTCA+AGG | + | chr7.4:93551820-93551839 | MS.gene97613:CDS | 50.0% | |
| AGATGGTAGACCTAGGCAAG+TGG | + | chr7.4:93551811-93551830 | MS.gene97613:CDS | 50.0% | |
| AGATTGACCGTTATGGGGTG+AGG | + | chr7.4:93551693-93551712 | MS.gene97613:CDS | 50.0% | |
| CGGTCAATCTCCAAAACCTC+GGG | - | chr7.4:93551683-93551702 | None:intergenic | 50.0% | |
| GACAATAAGGCGGCGAAAAC+CGG | - | chr7.4:93551454-93551473 | None:intergenic | 50.0% | |
| GATGTTGGGAAGGTGGAAGA+AGG | + | chr7.4:93551764-93551783 | MS.gene97613:CDS | 50.0% | |
| GCATTCCTTCCCCGACAATA+AGG | - | chr7.4:93551467-93551486 | None:intergenic | 50.0% | |
| GGGCATACGATTCAGAAGGA+AGG | + | chr7.4:93551584-93551603 | MS.gene97613:CDS | 50.0% | |
| GGGGAAGGAATGCACTTGTT+TGG | + | chr7.4:93551474-93551493 | MS.gene97613:CDS | 50.0% | |
| TTCCTTCCCCGACAATAAGG+CGG | - | chr7.4:93551464-93551483 | None:intergenic | 50.0% | |
| ! | CGACGATTCCTGGTGTTAAG+AGG | + | chr7.4:93551552-93551571 | MS.gene97613:CDS | 50.0% |
| !! | GGTTTTCGCCGCCTTATTGT+CGG | + | chr7.4:93551453-93551472 | MS.gene97613:CDS | 50.0% |
| !! | GTTTTCGCCGCCTTATTGTC+GGG | + | chr7.4:93551454-93551473 | MS.gene97613:CDS | 50.0% |
| !! | TTTTCGCCGCCTTATTGTCG+GGG | + | chr7.4:93551455-93551474 | MS.gene97613:CDS | 50.0% |
| ACGTGGCGTTTCGTGGTGTT+AGG | + | chr7.4:93551219-93551238 | MS.gene97613:CDS | 55.0% | |
| ATGTCGAAAGGATGCGGTGG+TGG | + | chr7.4:93551653-93551672 | MS.gene97613:CDS | 55.0% | |
| GCCTTGACTTCCACTTGCCT+AGG | - | chr7.4:93551824-93551843 | None:intergenic | 55.0% | |
| GGGAAGGTGGAAGAAGGGTT+TGG | + | chr7.4:93551770-93551789 | MS.gene97613:CDS | 55.0% | |
| GGTATGTCGAAAGGATGCGG+TGG | + | chr7.4:93551650-93551669 | MS.gene97613:CDS | 55.0% | |
| ! | CGTGGCGTTTCGTGGTGTTA+GGG | + | chr7.4:93551220-93551239 | MS.gene97613:CDS | 55.0% |
| ! | TGGGTTTAGGGCTAGGGTTG+CGG | + | chr7.4:93551256-93551275 | MS.gene97613:CDS | 55.0% |
| !! | GTTGCGGCTTTAAGGCCGAA+TGG | + | chr7.4:93551272-93551291 | MS.gene97613:CDS | 55.0% |
| !! | TGGTGGTTTGCCCGAGGTTT+TGG | + | chr7.4:93551670-93551689 | MS.gene97613:CDS | 55.0% |
| GGGCTAGGGTTGCGGCTTTA+AGG | + | chr7.4:93551264-93551283 | MS.gene97613:CDS | 60.0% | |
| ! | ATGCGGTGGTGGTTTGCCCG+AGG | + | chr7.4:93551664-93551683 | MS.gene97613:CDS | 65.0% |
| ! | CGCCGCCTTATTGTCGGGGA+AGG | + | chr7.4:93551459-93551478 | MS.gene97613:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93551161 | 93551847 | 93551161 | ID=MS.gene97613 |
| chr7.4 | mRNA | 93551161 | 93551847 | 93551161 | ID=MS.gene97613.t1;Parent=MS.gene97613 |
| chr7.4 | exon | 93551161 | 93551847 | 93551161 | ID=MS.gene97613.t1.exon1;Parent=MS.gene97613.t1 |
| chr7.4 | CDS | 93551161 | 93551847 | 93551161 | ID=cds.MS.gene97613.t1;Parent=MS.gene97613.t1 |
| Gene Sequence |
| Protein sequence |
