Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45425.t1 | XP_013467860.1 | 94.8 | 653 | 34 | 0 | 1 | 653 | 155 | 807 | 0.00E+00 | 1224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45425.t1 | Q9SVD0 | 48.1 | 694 | 284 | 19 | 1 | 650 | 150 | 811 | 2.8e-149 | 530.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45425.t1 | A0A072VJF0 | 94.8 | 653 | 34 | 0 | 1 | 653 | 155 | 807 | 0.0e+00 | 1224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene45425 | 0.860422 | 2.09E-63 | -1.69E-46 |
| MS.gene04918 | MS.gene45425 | 0.802732 | 4.88E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene45425 | 0.822262 | 2.60E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene45425 | 0.85553 | 5.93E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene45425 | 0.809125 | 2.21E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene45425 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene049672 | MS.gene45425 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene45425 | 0.870051 | 1.95E-66 | -1.69E-46 |
| MS.gene049807 | MS.gene45425 | 0.824793 | 6.66E-54 | -1.69E-46 |
| MS.gene049821 | MS.gene45425 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene45425 | 0.81883 | 1.60E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene45425 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene45425 | 0.841603 | 4.30E-58 | -1.69E-46 |
| MS.gene05045 | MS.gene45425 | 0.807249 | 5.54E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene45425 | 0.811962 | 5.38E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene45425 | 0.808135 | 3.59E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene45425 | 0.800308 | 1.53E-48 | -1.69E-46 |
| MS.gene051018 | MS.gene45425 | 0.81586 | 7.44E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene45425 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene45425 | 0.83304 | 6.70E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene45425 | 0.85597 | 4.41E-62 | -1.69E-46 |
| MS.gene051388 | MS.gene45425 | 0.848634 | 5.41E-60 | -1.69E-46 |
| MS.gene051490 | MS.gene45425 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene45425 | 0.801586 | 8.40E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene45425 | 0.806307 | 8.77E-50 | -1.69E-46 |
| MS.gene051664 | MS.gene45425 | 0.832355 | 9.91E-56 | -1.69E-46 |
| MS.gene051700 | MS.gene45425 | 0.844302 | 8.22E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene45425 | 0.863304 | 2.74E-64 | -1.69E-46 |
| MS.gene051720 | MS.gene45425 | 0.871405 | 7.01E-67 | -1.69E-46 |
| MS.gene051744 | MS.gene45425 | 0.838122 | 3.47E-57 | -1.69E-46 |
| MS.gene051791 | MS.gene45425 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene45425 | 0.808352 | 3.23E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene45425 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene052016 | MS.gene45425 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene45425 | 0.804505 | 2.09E-49 | -1.69E-46 |
| MS.gene052168 | MS.gene45425 | 0.802897 | 4.51E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene45425 | 0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene052516 | MS.gene45425 | 0.847276 | 1.28E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene45425 | 0.827314 | 1.68E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene45425 | 0.819076 | 1.40E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene45425 | 0.834742 | 2.51E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene45425 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene45425 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene45425 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene45425 | 0.826842 | 2.17E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene45425 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene45425 | 0.836476 | 9.15E-57 | -1.69E-46 |
| MS.gene053164 | MS.gene45425 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene45425 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene45425 | 0.873332 | 1.60E-67 | -1.69E-46 |
| MS.gene053536 | MS.gene45425 | 0.809925 | 1.49E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene45425 | 0.809873 | 1.53E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene45425 | 0.817213 | 3.70E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene45425 | 0.820456 | 6.79E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene45425 | 0.810742 | 9.91E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene45425 | 0.83476 | 2.49E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene45425 | 0.819159 | 1.34E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene45425 | 0.850889 | 1.27E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene45425 | 0.850374 | 1.77E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene45425 | 0.835371 | 1.75E-56 | -1.69E-46 |
| MS.gene054775 | MS.gene45425 | 0.854529 | 1.16E-61 | -1.69E-46 |
| MS.gene054991 | MS.gene45425 | 0.849057 | 4.13E-60 | -1.69E-46 |
| MS.gene055083 | MS.gene45425 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene055144 | MS.gene45425 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene45425 | 0.875941 | 2.07E-68 | -1.69E-46 |
| MS.gene055466 | MS.gene45425 | 0.870392 | 1.51E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene45425 | 0.871661 | 5.76E-67 | -1.69E-46 |
| MS.gene055469 | MS.gene45425 | 0.843663 | 1.22E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene45425 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene45425 | 0.832708 | 8.10E-56 | -1.69E-46 |
| MS.gene055537 | MS.gene45425 | 0.8483 | 6.69E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene45425 | -0.845522 | 3.85E-59 | -1.69E-46 |
| MS.gene056043 | MS.gene45425 | -0.832551 | 8.86E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene45425 | 0.82334 | 1.46E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene45425 | 0.82726 | 1.73E-54 | -1.69E-46 |
| MS.gene056215 | MS.gene45425 | 0.832659 | 8.33E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene45425 | 0.86616 | 3.49E-65 | -1.69E-46 |
| MS.gene056507 | MS.gene45425 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene45425 | 0.822367 | 2.46E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene45425 | 0.827347 | 1.65E-54 | -1.69E-46 |
| MS.gene057082 | MS.gene45425 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene45425 | 0.818906 | 1.54E-52 | -1.69E-46 |
| MS.gene057132 | MS.gene45425 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene057287 | MS.gene45425 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene057294 | MS.gene45425 | 0.820665 | 6.08E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene45425 | 0.803113 | 4.07E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene45425 | 0.802402 | 5.71E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene45425 | 0.836914 | 7.08E-57 | -1.69E-46 |
| MS.gene058087 | MS.gene45425 | 0.828323 | 9.58E-55 | -1.69E-46 |
| MS.gene058330 | MS.gene45425 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene45425 | 0.829171 | 5.98E-55 | -1.69E-46 |
| MS.gene058360 | MS.gene45425 | 0.800707 | 1.27E-48 | -1.69E-46 |
| MS.gene058492 | MS.gene45425 | 0.823 | 1.75E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene45425 | 0.827393 | 1.60E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene45425 | 0.827395 | 1.60E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene45425 | 0.805744 | 1.15E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene45425 | 0.817408 | 3.35E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene45425 | 0.816487 | 5.39E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene45425 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene05897 | MS.gene45425 | 0.822827 | 1.92E-53 | -1.69E-46 |
| MS.gene059084 | MS.gene45425 | 0.804942 | 1.70E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene45425 | 0.802223 | 6.21E-49 | -1.69E-46 |
| MS.gene059424 | MS.gene45425 | 0.80288 | 4.55E-49 | -1.69E-46 |
| MS.gene059426 | MS.gene45425 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene45425 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene45425 | 0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene45425 | 0.866097 | 3.66E-65 | -1.69E-46 |
| MS.gene059725 | MS.gene45425 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene45425 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene059842 | MS.gene45425 | 0.823833 | 1.12E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene45425 | 0.807553 | 4.78E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene45425 | 0.82295 | 1.80E-53 | -1.69E-46 |
| MS.gene060519 | MS.gene45425 | 0.819139 | 1.36E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene45425 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene45425 | 0.845779 | 3.28E-59 | -1.69E-46 |
| MS.gene060603 | MS.gene45425 | 0.801242 | 9.88E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene45425 | 0.841581 | 4.36E-58 | -1.69E-46 |
| MS.gene061160 | MS.gene45425 | 0.802031 | 6.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45425.t1 | MTR_1g057150 | 94.793 | 653 | 34 | 0 | 1 | 653 | 155 | 807 | 0.0 | 1223 |
| MS.gene45425.t1 | MTR_1g090640 | 41.311 | 351 | 172 | 8 | 1 | 326 | 152 | 493 | 6.39e-72 | 249 |
| MS.gene45425.t1 | MTR_1g090640 | 45.353 | 269 | 116 | 9 | 394 | 649 | 597 | 847 | 1.57e-51 | 191 |
| MS.gene45425.t1 | MTR_2g038200 | 26.833 | 641 | 345 | 26 | 1 | 554 | 155 | 758 | 2.08e-36 | 147 |
| MS.gene45425.t1 | MTR_4g129230 | 24.819 | 689 | 366 | 24 | 1 | 577 | 150 | 798 | 1.45e-31 | 132 |
| MS.gene45425.t1 | MTR_1183s0010 | 36.842 | 171 | 86 | 4 | 486 | 653 | 134 | 285 | 2.82e-21 | 95.1 |
| MS.gene45425.t1 | MTR_5g071060 | 27.111 | 225 | 157 | 4 | 356 | 577 | 625 | 845 | 3.75e-14 | 76.6 |
| MS.gene45425.t1 | MTR_5g071060 | 27.111 | 225 | 157 | 4 | 356 | 577 | 592 | 812 | 3.93e-14 | 76.6 |
| MS.gene45425.t1 | MTR_3g464150 | 27.197 | 239 | 162 | 5 | 347 | 581 | 613 | 843 | 9.86e-14 | 75.5 |
| MS.gene45425.t1 | MTR_3g070850 | 29.143 | 175 | 110 | 4 | 407 | 581 | 686 | 846 | 1.74e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45425.t1 | AT3G52490 | 47.557 | 696 | 285 | 19 | 1 | 650 | 150 | 811 | 0.0 | 544 |
| MS.gene45425.t1 | AT4G29920 | 26.281 | 605 | 343 | 21 | 1 | 521 | 160 | 745 | 9.59e-35 | 142 |
| MS.gene45425.t1 | AT4G30350 | 25.740 | 676 | 337 | 18 | 1 | 611 | 160 | 735 | 1.31e-33 | 138 |
| MS.gene45425.t1 | AT5G57130 | 24.962 | 653 | 332 | 25 | 1 | 543 | 177 | 781 | 2.80e-33 | 137 |
| MS.gene45425.t1 | AT4G29920 | 26.116 | 605 | 341 | 22 | 1 | 521 | 160 | 742 | 1.06e-32 | 135 |
| MS.gene45425.t1 | AT5G57710 | 24.185 | 736 | 403 | 27 | 1 | 626 | 147 | 837 | 6.21e-31 | 130 |
| MS.gene45425.t1 | AT2G40130 | 21.470 | 517 | 313 | 16 | 89 | 580 | 244 | 692 | 4.67e-12 | 70.1 |
Find 0 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTCAATAATAATATTAT+TGG | + | 10414:11009-11028 | MS.gene45425:intergenic | 10.0% |
| !!! | ATTTGCTATATATTTATTTT+AGG | + | 10414:10566-10585 | MS.gene45425:intergenic | 10.0% |
| !!! | TATTATATATTTTGATTTGT+GGG | + | 10414:10876-10895 | MS.gene45425:intergenic | 10.0% |
| !!! | TTATTATATATTTTGATTTG+TGG | + | 10414:10877-10896 | MS.gene45425:intergenic | 10.0% |
| !!! | TTTTTTTTGACATATATAAT+TGG | - | 10414:10324-10343 | MS.gene45425:intron | 10.0% |
| !! | AAAAAAAAAAAGAACTAACT+AGG | - | 10414:10216-10235 | MS.gene45425:intron | 15.0% |
| !! | AATAATTATCTATCATGAAA+TGG | - | 10414:9919-9938 | MS.gene45425:CDS | 15.0% |
| !! | CAATACAAAAATGAAAATAA+AGG | - | 10414:10775-10794 | MS.gene45425:intron | 15.0% |
| !! | TATTGAAATGAAATTATTGT+AGG | + | 10414:11635-11654 | MS.gene45425:intergenic | 15.0% |
| !!! | ATTATATATTTTGATTTGTG+GGG | + | 10414:10875-10894 | MS.gene45425:intergenic | 15.0% |
| !! | AATATTATCATCACAATGAT+AGG | + | 10414:11167-11186 | MS.gene45425:intergenic | 20.0% |
| !! | ATATTATCATCACAATGATA+GGG | + | 10414:11166-11185 | MS.gene45425:intergenic | 20.0% |
| !! | ATTTATGAAGCTATTAGAAA+TGG | + | 10414:10486-10505 | MS.gene45425:intergenic | 20.0% |
| !! | GATAATTATTCATGAAAAGA+AGG | + | 10414:9909-9928 | MS.gene45425:intergenic | 20.0% |
| !! | TTGATTATAAGAAGAAACAA+GGG | - | 10414:9576-9595 | MS.gene45425:CDS | 20.0% |
| !! | TTTGATTATAAGAAGAAACA+AGG | - | 10414:9575-9594 | MS.gene45425:CDS | 20.0% |
| !!! | AAAAAGAGTTTTAATGGAAA+AGG | - | 10414:9518-9537 | MS.gene45425:CDS | 20.0% |
| !!! | AAAAGAGTTTTAATGGAAAA+GGG | - | 10414:9519-9538 | MS.gene45425:CDS | 20.0% |
| !!! | CAAAACATATTTTCCTTATA+TGG | + | 10414:10031-10050 | MS.gene45425:intergenic | 20.0% |
| !!! | CATATAAGGAAAATATGTTT+TGG | - | 10414:10029-10048 | MS.gene45425:CDS | 20.0% |
| !!! | GTTGATTATTTTTCACAAAT+TGG | - | 10414:11811-11830 | MS.gene45425:CDS | 20.0% |
| !!! | TTTGAATATTTCTATTGATG+AGG | - | 10414:12041-12060 | MS.gene45425:CDS | 20.0% |
| ! | AAAGATTCTCTTCAAATTTC+AGG | - | 10414:12122-12141 | MS.gene45425:CDS | 25.0% |
| ! | AAATAGCAAAAGAATTAGCT+AGG | - | 10414:11596-11615 | MS.gene45425:CDS | 25.0% |
| ! | ATGGCAAAAAGATATAATAC+CGG | - | 10414:11447-11466 | MS.gene45425:CDS | 25.0% |
| ! | ATTACTATCACCACATATAA+TGG | + | 10414:10524-10543 | MS.gene45425:intergenic | 25.0% |
| ! | GAAAAAGAAAAAAGAGGAAA+TGG | + | 10414:10597-10616 | MS.gene45425:intergenic | 25.0% |
| ! | GAAAAAGTTGAAGAGATTAA+GGG | - | 10414:9488-9507 | MS.gene45425:CDS | 25.0% |
| ! | GATAGTTTCCAACAAAAAAT+TGG | - | 10414:9235-9254 | MS.gene45425:CDS | 25.0% |
| ! | GGTAAAATTAACATGAAGTT+TGG | - | 10414:9819-9838 | MS.gene45425:CDS | 25.0% |
| ! | GGTGATAGTAATATTTGAAA+TGG | - | 10414:10532-10551 | MS.gene45425:CDS | 25.0% |
| ! | TAACCACTTAAGAAACAAAT+AGG | + | 10414:10069-10088 | MS.gene45425:intergenic | 25.0% |
| ! | TCTTAAGTGGTTATTGTAAT+GGG | - | 10414:10076-10095 | MS.gene45425:CDS | 25.0% |
| ! | TGAAGAGAAAAAGAAAAAAG+AGG | + | 10414:10603-10622 | MS.gene45425:intergenic | 25.0% |
| ! | TGTACTTATATTGGAAGATT+TGG | - | 10414:11733-11752 | MS.gene45425:CDS | 25.0% |
| ! | TTCCAACAAAAAATTGGTAT+TGG | - | 10414:9241-9260 | MS.gene45425:CDS | 25.0% |
| ! | TTCTTAAGTGGTTATTGTAA+TGG | - | 10414:10075-10094 | MS.gene45425:CDS | 25.0% |
| !! | ATTTAGTTAACGAGTCTTAT+AGG | - | 10414:10967-10986 | MS.gene45425:intron | 25.0% |
| !! | GTAATGGAAAAGTTTGATAA+AGG | - | 10414:9380-9399 | MS.gene45425:CDS | 25.0% |
| !! | TGATATTAATGTTGCTACTT+TGG | - | 10414:11990-12009 | MS.gene45425:CDS | 25.0% |
| !! | TTCACAAATTGGTTTCAAAA+GGG | - | 10414:11822-11841 | MS.gene45425:CDS | 25.0% |
| !! | TTTCACAAATTGGTTTCAAA+AGG | - | 10414:11821-11840 | MS.gene45425:CDS | 25.0% |
| !! | TTTCCTATTTGTTTCTTAAG+TGG | - | 10414:10063-10082 | MS.gene45425:CDS | 25.0% |
| !!! | ATCCAATACCAATTTTTTGT+TGG | + | 10414:9246-9265 | MS.gene45425:intergenic | 25.0% |
| !!! | CTTGCAAAAAAGAGTTTTAA+TGG | - | 10414:9512-9531 | MS.gene45425:CDS | 25.0% |
| !!! | TGATTTTGGTAATCTTTCAA+GGG | - | 10414:9454-9473 | MS.gene45425:CDS | 25.0% |
| !!! | TTAGCTTTTAACCTAGTAAA+AGG | + | 10414:9981-10000 | MS.gene45425:intergenic | 25.0% |
| !!! | TTTTTAACTCTTTCCTAGTT+AGG | + | 10414:10200-10219 | MS.gene45425:intergenic | 25.0% |
| !!! | TTTTTTCTTTTTCTCTTCAG+TGG | - | 10414:10604-10623 | MS.gene45425:CDS | 25.0% |
| AACCAAAAAAAGACCTAACT+AGG | - | 10414:10184-10203 | MS.gene45425:intron | 30.0% | |
| AATGTCAAGTAATCCTCATA+GGG | - | 10414:11762-11781 | MS.gene45425:CDS | 30.0% | |
| ATCTATCATGAAATGGACAT+TGG | - | 10414:9926-9945 | MS.gene45425:CDS | 30.0% | |
| ATGAAATGGACATTGGAAAA+GGG | - | 10414:9933-9952 | MS.gene45425:CDS | 30.0% | |
| ATGATGCTAAAGAAGAAACA+TGG | - | 10414:11536-11555 | MS.gene45425:CDS | 30.0% | |
| GAAGCAAGTTGTACTTATAT+TGG | - | 10414:11724-11743 | MS.gene45425:CDS | 30.0% | |
| GACAAGTTCTTATGTTTCTT+TGG | - | 10414:12017-12036 | MS.gene45425:CDS | 30.0% | |
| GAGATTGGAAAATTGGTTAA+TGG | - | 10414:9641-9660 | MS.gene45425:CDS | 30.0% | |
| GGAAAAAGTTGAAGAGATTA+AGG | - | 10414:9487-9506 | MS.gene45425:CDS | 30.0% | |
| GGTTACATGAGATGTAAAAA+TGG | - | 10414:9713-9732 | MS.gene45425:CDS | 30.0% | |
| TAGAGGTTATTATTGTCCTT+TGG | - | 10414:9604-9623 | MS.gene45425:CDS | 30.0% | |
| TATTTAAGCCAAGCCATATA+AGG | - | 10414:10015-10034 | MS.gene45425:CDS | 30.0% | |
| TATTTACAGAATGTCCAAGT+AGG | - | 10414:11091-11110 | MS.gene45425:intron | 30.0% | |
| TGTATCTTGGAGATCTAAAA+TGG | - | 10414:9549-9568 | MS.gene45425:CDS | 30.0% | |
| ! | AATTGGTATTGGATCCAATT+AGG | - | 10414:9252-9271 | MS.gene45425:CDS | 30.0% |
| ! | AGTTGTCTTTTCCTTTTACT+AGG | - | 10414:9967-9986 | MS.gene45425:CDS | 30.0% |
| ! | ATAGATTGGTGGATGAAATT+GGG | - | 10414:12079-12098 | MS.gene45425:CDS | 30.0% |
| ! | ATTGGTATTGGATCCAATTA+GGG | - | 10414:9253-9272 | MS.gene45425:CDS | 30.0% |
| ! | CATATTTTCCTTATATGGCT+TGG | + | 10414:10026-10045 | MS.gene45425:intergenic | 30.0% |
| ! | GGTATTATATCTTTTTGCCA+TGG | + | 10414:11448-11467 | MS.gene45425:intergenic | 30.0% |
| ! | GGTTATTGTAATGGGAAAAA+TGG | - | 10414:10084-10103 | MS.gene45425:CDS | 30.0% |
| ! | TATTGAGAAAGGAAGAGTTT+TGG | - | 10414:11846-11865 | MS.gene45425:CDS | 30.0% |
| ! | TCTCTTTCTCTTTCTGATTT+TGG | - | 10414:9440-9459 | MS.gene45425:CDS | 30.0% |
| ! | TTGGAGAATGTGGAAAATTT+TGG | - | 10414:9666-9685 | MS.gene45425:CDS | 30.0% |
| !! | AAAGGGTATGTTTTGTATCT+TGG | - | 10414:9536-9555 | MS.gene45425:CDS | 30.0% |
| !! | AATTAGCTAGGCTTGTTTTT+GGG | - | 10414:11608-11627 | MS.gene45425:CDS | 30.0% |
| !! | AGAAAGAGTATTGTTGTTGT+TGG | - | 10414:9320-9339 | MS.gene45425:CDS | 30.0% |
| !! | AGCTGTTTTACCATTATATG+TGG | - | 10414:10511-10530 | MS.gene45425:CDS | 30.0% |
| !! | CTGATTTTGGTAATCTTTCA+AGG | - | 10414:9453-9472 | MS.gene45425:CDS | 30.0% |
| !! | GATAATGGAGATTGGAAAAT+TGG | - | 10414:9634-9653 | MS.gene45425:CDS | 30.0% |
| !! | GATGTTGATGAGTCTTTTAA+AGG | - | 10414:9404-9423 | MS.gene45425:CDS | 30.0% |
| !! | TCTTGAGATGATCTTTGTTT+TGG | + | 10414:11958-11977 | MS.gene45425:intergenic | 30.0% |
| !!! | ATGTGTATTGCTACTTTTCA+AGG | - | 10414:9692-9711 | MS.gene45425:CDS | 30.0% |
| !!! | TTCCTAGTTAGGTCTTTTTT+TGG | + | 10414:10189-10208 | MS.gene45425:intergenic | 30.0% |
| AAAACCGTACTTGCAATTTC+CGG | + | 10414:11469-11488 | MS.gene45424:intergenic | 35.0% | |
| AAACCTGATGTAGATGAAGA+AGG | + | 10414:11211-11230 | MS.gene45424:intergenic | 35.0% | |
| AACAAATGGAACTCTATGTG+TGG | - | 10414:11124-11143 | MS.gene45425:intron | 35.0% | |
| AAGAAACAAGGGATGATTAG+AGG | - | 10414:9587-9606 | MS.gene45425:CDS | 35.0% | |
| AAGCTGAGAATAAAACAAGC+TGG | - | 10414:10653-10672 | MS.gene45425:intron | 35.0% | |
| AATACCGGAAATTGCAAGTA+CGG | - | 10414:11462-11481 | MS.gene45425:CDS | 35.0% | |
| AGGAATTGCTTACAATGATC+AGG | - | 10414:10795-10814 | MS.gene45425:intron | 35.0% | |
| AGGTGTAGTTAAAGGAGTAA+TGG | - | 10414:9364-9383 | MS.gene45425:CDS | 35.0% | |
| ATCCATCACTTGAGACTATT+TGG | - | 10414:9738-9757 | MS.gene45425:CDS | 35.0% | |
| CAATGTCAAGTAATCCTCAT+AGG | - | 10414:11761-11780 | MS.gene45425:CDS | 35.0% | |
| CACTAGAAGAGGTTGAATTA+GGG | + | 10414:11336-11355 | MS.gene45425:intergenic | 35.0% | |
| CATGAAATGGACATTGGAAA+AGG | - | 10414:9932-9951 | MS.gene45425:CDS | 35.0% | |
| GAAAATCCTTCTACTATGAG+TGG | - | 10414:9164-9183 | MS.gene45425:CDS | 35.0% | |
| GAAGAGAATCTTTCTGTCTA+CGG | + | 10414:12115-12134 | MS.gene45425:intergenic | 35.0% | |
| GGAAAATTGGTTAATGGTGT+TGG | - | 10414:9647-9666 | MS.gene45425:CDS | 35.0% | |
| GGGGCATGGTAAAAAATAAT+TGG | + | 10414:10856-10875 | MS.gene45425:intergenic | 35.0% | |
| GTTTGAAGGTTCATTTGACT+TGG | + | 10414:11314-11333 | MS.gene45425:intergenic | 35.0% | |
| TACTATGAGTGGAAAGTCAA+AGG | - | 10414:9175-9194 | MS.gene45425:CDS | 35.0% | |
| TATTGATGAGGATTACGATG+AGG | - | 10414:12053-12072 | MS.gene45425:CDS | 35.0% | |
| TCAACTAGAAAAACCCTATG+AGG | + | 10414:11778-11797 | MS.gene45425:intergenic | 35.0% | |
| TCACTAGAAGAGGTTGAATT+AGG | + | 10414:11337-11356 | MS.gene45425:intergenic | 35.0% | |
| TCCATTATCATGTGATCCAA+AGG | + | 10414:9623-9642 | MS.gene45425:intergenic | 35.0% | |
| TCCTTTGGATCACATGATAA+TGG | - | 10414:9619-9638 | MS.gene45425:CDS | 35.0% | |
| TCTTTCAAGGGTAGAAATTG+AGG | - | 10414:9466-9485 | MS.gene45425:CDS | 35.0% | |
| TTACGATGAGGATGATAGAT+TGG | - | 10414:12065-12084 | MS.gene45425:CDS | 35.0% | |
| TTCAAAAGGGCTATTGAGAA+AGG | - | 10414:11835-11854 | MS.gene45425:CDS | 35.0% | |
| TTCCAAATAGTCTCAAGTGA+TGG | + | 10414:9743-9762 | MS.gene45425:intergenic | 35.0% | |
| TTGATATCACCAACCCTAAT+TGG | + | 10414:9269-9288 | MS.gene45425:intergenic | 35.0% | |
| TTGCTTTCAAATCAACACCT+TGG | + | 10414:11570-11589 | MS.gene45425:intergenic | 35.0% | |
| TTTGGATTCAAATGGTGAAG+AGG | - | 10414:11864-11883 | MS.gene45425:CDS | 35.0% | |
| ! | AACAAGAGTTGATTCAAGTG+AGG | - | 10414:11675-11694 | MS.gene45425:CDS | 35.0% |
| ! | ACTCTTGAAGGTGTAGTTAA+AGG | - | 10414:9356-9375 | MS.gene45425:CDS | 35.0% |
| ! | AGAAACAGCTTGTTCAACAT+TGG | + | 10414:9141-9160 | MS.gene45425:intergenic | 35.0% |
| ! | AGTTAACGAGTCTTATAGGT+AGG | - | 10414:10971-10990 | MS.gene45425:intron | 35.0% |
| ! | CACTTTGAGAGAACCAAAAA+TGG | + | 10414:11288-11307 | MS.gene45425:intergenic | 35.0% |
| ! | GATAGATTGGTGGATGAAAT+TGG | - | 10414:12078-12097 | MS.gene45425:CDS | 35.0% |
| ! | TGTAACTTGTAACTGTGCTT+TGG | - | 10414:9862-9881 | MS.gene45425:CDS | 35.0% |
| !! | ATGCAATGCTTTGGAGAAAA+AGG | - | 10414:11420-11439 | MS.gene45425:intron | 35.0% |
| !! | CACAATGATAGGGTTGTTTT+TGG | + | 10414:11156-11175 | MS.gene45425:intergenic | 35.0% |
| !! | GAATTAGCTAGGCTTGTTTT+TGG | - | 10414:11607-11626 | MS.gene45425:CDS | 35.0% |
| !! | GATCACATGATAATGGAGAT+TGG | - | 10414:9626-9645 | MS.gene45425:CDS | 35.0% |
| !! | TGTTGAACAAGCTGTTTCTT+TGG | - | 10414:9142-9161 | MS.gene45425:CDS | 35.0% |
| !!! | ATATTTTGATTTGTGGGGCA+TGG | + | 10414:10870-10889 | MS.gene45425:intergenic | 35.0% |
| !!! | CATTTTTGGTTCTCTCAAAG+TGG | - | 10414:11286-11305 | MS.gene45425:intron | 35.0% |
| !!! | GAAACATGGTTGTTTTTCCA+AGG | - | 10414:11550-11569 | MS.gene45425:CDS | 35.0% |
| !!! | GGAAGAGTTTTGGATTCAAA+TGG | - | 10414:11856-11875 | MS.gene45425:CDS | 35.0% |
| AGGATGTTGTTGATGCTCAT+AGG | + | 10414:11236-11255 | MS.gene45425:intergenic | 40.0% | |
| CCGGAATGGTGAAAAGAAAA+GGG | - | 10414:11500-11519 | MS.gene45425:CDS | 40.0% | |
| GAATGTGTAGCTACTCTTGA+AGG | - | 10414:9344-9363 | MS.gene45425:CDS | 40.0% | |
| GACTTTCCACTCATAGTAGA+AGG | + | 10414:9173-9192 | MS.gene45425:intergenic | 40.0% | |
| GAGAACTCTATGCAATGCTT+TGG | - | 10414:11411-11430 | MS.gene45425:intron | 40.0% | |
| GAGGTTGAATTAGGGTTTGA+AGG | + | 10414:11328-11347 | MS.gene45425:intergenic | 40.0% | |
| GATTCAAATGGTGAAGAGGT+TGG | - | 10414:11868-11887 | MS.gene45425:CDS | 40.0% | |
| GTATTGGATCCAATTAGGGT+TGG | - | 10414:9257-9276 | MS.gene45425:CDS | 40.0% | |
| TAGGAGAGCTTTGCAACAAA+TGG | - | 10414:11110-11129 | MS.gene45425:intron | 40.0% | |
| TATCCTATCACTATACCTGC+TGG | - | 10414:9767-9786 | MS.gene45425:CDS | 40.0% | |
| TCACCTTCTTCATCTACATC+AGG | - | 10414:11205-11224 | MS.gene45425:intron | 40.0% | |
| TCCGGAATGGTGAAAAGAAA+AGG | - | 10414:11499-11518 | MS.gene45425:CDS | 40.0% | |
| TCGCTTTGTGACACATTGTT+AGG | + | 10414:11256-11275 | MS.gene45425:intergenic | 40.0% | |
| TTAGTTGCTCCATTTGCACA+AGG | + | 10414:11360-11379 | MS.gene45425:intergenic | 40.0% | |
| TTCTAGTGACCTTGTGCAAA+TGG | - | 10414:11348-11367 | MS.gene45425:intron | 40.0% | |
| TTGTATTGTTGTAGCCATGC+AGG | + | 10414:10763-10782 | MS.gene45425:intergenic | 40.0% | |
| ! | CCCTTTTCTTTTCACCATTC+CGG | + | 10414:11503-11522 | MS.gene45425:intergenic | 40.0% |
| ! | CTTTGGAGAAAAAGGTTCCA+TGG | - | 10414:11428-11447 | MS.gene45425:intron | 40.0% |
| ! | GTTAATGGTGTTGGAGAATG+TGG | - | 10414:9656-9675 | MS.gene45425:CDS | 40.0% |
| ! | TTCTTTTCACCATTCCGGAT+CGG | + | 10414:11498-11517 | MS.gene45425:intergenic | 40.0% |
| ACAAGCTGGCTATTGCATGA+AGG | - | 10414:10667-10686 | MS.gene45425:intron | 45.0% | |
| AGAACCAAAAATGGCGATCG+TGG | + | 10414:11279-11298 | MS.gene45425:intergenic | 45.0% | |
| CAAGTTCAAGTCTTCCTGCA+TGG | - | 10414:10746-10765 | MS.gene45425:intron | 45.0% | |
| CGATGAGGATGATAGATTGG+TGG | - | 10414:12068-12087 | MS.gene45425:CDS | 45.0% | |
| CTTCCAGCAGGTATAGTGAT+AGG | + | 10414:9773-9792 | MS.gene45425:intergenic | 45.0% | |
| GATTGAGTCTCATCACTGAC+AGG | - | 10414:9798-9817 | MS.gene45425:CDS | 45.0% | |
| TGGCTATTGCATGAAGGAGT+AGG | - | 10414:10673-10692 | MS.gene45425:intron | 45.0% | |
| TGTTGCAAAGCTCTCCTACT+TGG | + | 10414:11108-11127 | MS.gene45425:intergenic | 45.0% | |
| TTGCACAAGGTCACTAGAAG+AGG | + | 10414:11347-11366 | MS.gene45425:intergenic | 45.0% | |
| CTCAATCTCAAGCTTCCAGC+AGG | + | 10414:9785-9804 | MS.gene45425:intergenic | 50.0% | |
| TTTGCAATGCCGATCCGGAA+TGG | - | 10414:11486-11505 | MS.gene45425:CDS | 50.0% | |
| ! | ACGGTTTTGCAATGCCGATC+CGG | - | 10414:11481-11500 | MS.gene45425:CDS | 50.0% |
| !! | GCGACCACGATCGCCATTTT+TGG | - | 10414:11272-11291 | MS.gene45425:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10414 | gene | 9101 | 12152 | 9101 | ID=MS.gene45425 |
| 10414 | mRNA | 9101 | 12152 | 9101 | ID=MS.gene45425.t1;Parent=MS.gene45425 |
| 10414 | exon | 11434 | 12152 | 11434 | ID=MS.gene45425.t1.exon1;Parent=MS.gene45425.t1 |
| 10414 | CDS | 11434 | 12152 | 11434 | ID=cds.MS.gene45425.t1;Parent=MS.gene45425.t1 |
| 10414 | exon | 10437 | 10629 | 10437 | ID=MS.gene45425.t1.exon2;Parent=MS.gene45425.t1 |
| 10414 | CDS | 10437 | 10629 | 10437 | ID=cds.MS.gene45425.t1;Parent=MS.gene45425.t1 |
| 10414 | exon | 9101 | 10153 | 9101 | ID=MS.gene45425.t1.exon3;Parent=MS.gene45425.t1 |
| 10414 | CDS | 9101 | 10153 | 9101 | ID=cds.MS.gene45425.t1;Parent=MS.gene45425.t1 |
| Gene Sequence |
| Protein sequence |
