Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43075.t1 | XP_013464926.1 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 2.40E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43075.t1 | I3SET6 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.8e-83 | 318.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene43075 | 0.83478 | 2.46E-56 | -1.69E-46 |
| MS.gene049159 | MS.gene43075 | 0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene43075 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene43075 | 0.841025 | 6.10E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene43075 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene43075 | 0.820525 | 6.55E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene43075 | 0.807471 | 4.97E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene43075 | 0.835166 | 1.97E-56 | -1.69E-46 |
| MS.gene049821 | MS.gene43075 | 0.835417 | 1.70E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene43075 | 0.800625 | 1.32E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene43075 | 0.814963 | 1.18E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene43075 | 0.828031 | 1.13E-54 | -1.69E-46 |
| MS.gene050020 | MS.gene43075 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene050125 | MS.gene43075 | 0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene43075 | 0.803142 | 4.01E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene43075 | 0.818866 | 1.57E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene43075 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene43075 | 0.859271 | 4.64E-63 | -1.69E-46 |
| MS.gene050808 | MS.gene43075 | 0.826767 | 2.26E-54 | -1.69E-46 |
| MS.gene050901 | MS.gene43075 | 0.842513 | 2.47E-58 | -1.69E-46 |
| MS.gene051180 | MS.gene43075 | 0.815605 | 8.49E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene43075 | 0.819851 | 9.35E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene43075 | 0.816487 | 5.39E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene43075 | 0.834585 | 2.75E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene43075 | 0.831056 | 2.07E-55 | -1.69E-46 |
| MS.gene051388 | MS.gene43075 | 0.816882 | 4.40E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene43075 | 0.821968 | 3.05E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene43075 | 0.820311 | 7.34E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene43075 | 0.897308 | 1.59E-76 | -1.69E-46 |
| MS.gene051720 | MS.gene43075 | 0.903236 | 4.27E-79 | -1.69E-46 |
| MS.gene051744 | MS.gene43075 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene43075 | 0.801913 | 7.20E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene43075 | 0.828644 | 8.02E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene43075 | 0.837321 | 5.57E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene43075 | 0.852875 | 3.46E-61 | -1.69E-46 |
| MS.gene052519 | MS.gene43075 | 0.826771 | 2.26E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene43075 | 0.841087 | 5.88E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene43075 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene43075 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene43075 | 0.829186 | 5.93E-55 | -1.69E-46 |
| MS.gene052673 | MS.gene43075 | -0.825572 | 4.36E-54 | -1.69E-46 |
| MS.gene052732 | MS.gene43075 | 0.810916 | 9.08E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene43075 | 0.828355 | 9.42E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene43075 | 0.802497 | 5.45E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene43075 | 0.800449 | 1.43E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene43075 | 0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene43075 | 0.817548 | 3.12E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene43075 | 0.851195 | 1.04E-60 | -1.69E-46 |
| MS.gene053164 | MS.gene43075 | 0.821089 | 4.86E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene43075 | 0.846358 | 2.28E-59 | -1.69E-46 |
| MS.gene053581 | MS.gene43075 | 0.861896 | 7.43E-64 | -1.69E-46 |
| MS.gene053599 | MS.gene43075 | 0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene43075 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene053678 | MS.gene43075 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene43075 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene43075 | 0.827068 | 1.92E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene43075 | 0.851178 | 1.05E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene43075 | 0.886186 | 4.26E-72 | -1.69E-46 |
| MS.gene054651 | MS.gene43075 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene43075 | 0.845586 | 3.70E-59 | -1.69E-46 |
| MS.gene054801 | MS.gene43075 | 0.821577 | 3.75E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene43075 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene055083 | MS.gene43075 | 0.806157 | 9.43E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene43075 | 0.873391 | 1.52E-67 | -1.69E-46 |
| MS.gene055227 | MS.gene43075 | 0.803711 | 3.06E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene43075 | 0.883058 | 6.18E-71 | -1.69E-46 |
| MS.gene055466 | MS.gene43075 | 0.881938 | 1.58E-70 | -1.69E-46 |
| MS.gene055468 | MS.gene43075 | 0.886659 | 2.82E-72 | -1.69E-46 |
| MS.gene055469 | MS.gene43075 | 0.843228 | 1.59E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene43075 | 0.822999 | 1.75E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene43075 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene43075 | 0.838631 | 2.56E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene43075 | -0.867167 | 1.67E-65 | -1.69E-46 |
| MS.gene055608 | MS.gene43075 | 0.834833 | 2.39E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene43075 | 0.802834 | 4.65E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene43075 | 0.820482 | 6.70E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene43075 | 0.839019 | 2.03E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene43075 | 0.818414 | 1.99E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene43075 | 0.808661 | 2.78E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene43075 | -0.855469 | 6.18E-62 | -1.69E-46 |
| MS.gene056050 | MS.gene43075 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene43075 | 0.805809 | 1.12E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene43075 | 0.825268 | 5.14E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene43075 | 0.848042 | 7.89E-60 | -1.69E-46 |
| MS.gene056366 | MS.gene43075 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene43075 | 0.80481 | 1.81E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene43075 | 0.81622 | 6.19E-52 | -1.69E-46 |
| MS.gene056859 | MS.gene43075 | 0.815446 | 9.21E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene43075 | 0.81323 | 2.84E-51 | -1.69E-46 |
| MS.gene057287 | MS.gene43075 | 0.821376 | 4.17E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene43075 | 0.829427 | 5.18E-55 | -1.69E-46 |
| MS.gene057446 | MS.gene43075 | 0.802959 | 4.38E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene43075 | 0.801916 | 7.18E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene43075 | 0.814043 | 1.88E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene43075 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene43075 | 0.823545 | 1.31E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene43075 | 0.806732 | 7.13E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene43075 | 0.862562 | 4.64E-64 | -1.69E-46 |
| MS.gene05847 | MS.gene43075 | 0.826715 | 2.33E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene43075 | 0.851035 | 1.15E-60 | -1.69E-46 |
| MS.gene058852 | MS.gene43075 | 0.80916 | 2.17E-50 | -1.69E-46 |
| MS.gene058945 | MS.gene43075 | 0.814693 | 1.35E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene43075 | 0.818346 | 2.06E-52 | -1.69E-46 |
| MS.gene059426 | MS.gene43075 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene43075 | 0.805493 | 1.30E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene43075 | 0.841478 | 4.64E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene43075 | 0.842007 | 3.36E-58 | -1.69E-46 |
| MS.gene059937 | MS.gene43075 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene43075 | -0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene43075 | 0.805575 | 1.25E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene43075 | 0.833459 | 5.27E-56 | -1.69E-46 |
| MS.gene060519 | MS.gene43075 | 0.856557 | 2.97E-62 | -1.69E-46 |
| MS.gene060587 | MS.gene43075 | 0.848801 | 4.86E-60 | -1.69E-46 |
| MS.gene060603 | MS.gene43075 | 0.838539 | 2.71E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene43075 | 0.827453 | 1.55E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43075.t1 | MTR_2g085025 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.74e-123 | 345 |
| MS.gene43075.t1 | MTR_7g104020 | 67.742 | 155 | 48 | 1 | 20 | 174 | 14 | 166 | 1.10e-61 | 188 |
| MS.gene43075.t1 | MTR_7g104020 | 66.456 | 158 | 48 | 2 | 20 | 174 | 14 | 169 | 1.27e-59 | 183 |
| MS.gene43075.t1 | MTR_1g492930 | 56.329 | 158 | 68 | 1 | 17 | 173 | 1 | 158 | 3.93e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43075.t1 | AT2G27740 | 59.649 | 171 | 68 | 1 | 1 | 171 | 1 | 170 | 4.65e-68 | 205 |
| MS.gene43075.t1 | AT2G36410 | 67.647 | 136 | 44 | 0 | 38 | 173 | 57 | 192 | 2.01e-61 | 189 |
| MS.gene43075.t1 | AT3G52920 | 68.889 | 135 | 42 | 0 | 38 | 172 | 28 | 162 | 3.93e-61 | 187 |
| MS.gene43075.t1 | AT3G09980 | 70.139 | 144 | 43 | 0 | 31 | 174 | 35 | 178 | 9.03e-60 | 184 |
| MS.gene43075.t1 | AT2G36410 | 66.187 | 139 | 44 | 1 | 38 | 173 | 57 | 195 | 2.42e-59 | 183 |
| MS.gene43075.t1 | AT3G52920 | 67.391 | 138 | 42 | 1 | 38 | 172 | 28 | 165 | 6.10e-59 | 182 |
| MS.gene43075.t1 | AT5G03660 | 66.418 | 134 | 45 | 0 | 38 | 171 | 36 | 169 | 2.16e-49 | 157 |
| MS.gene43075.t1 | AT3G52900 | 51.974 | 152 | 73 | 0 | 23 | 174 | 13 | 164 | 1.47e-48 | 155 |
| MS.gene43075.t1 | AT2G36355 | 51.299 | 154 | 69 | 2 | 22 | 173 | 5 | 154 | 1.67e-44 | 144 |
| MS.gene43075.t1 | AT2G27740 | 53.659 | 123 | 56 | 1 | 1 | 123 | 1 | 122 | 1.12e-41 | 136 |
| MS.gene43075.t1 | AT5G03660 | 63.793 | 116 | 42 | 0 | 38 | 153 | 36 | 151 | 8.52e-40 | 132 |
| MS.gene43075.t1 | AT2G36410 | 66.279 | 86 | 29 | 0 | 38 | 123 | 57 | 142 | 3.19e-35 | 120 |
| MS.gene43075.t1 | AT5G03660 | 53.731 | 134 | 40 | 1 | 38 | 171 | 36 | 147 | 9.69e-32 | 112 |
| MS.gene43075.t1 | AT2G36355 | 62.651 | 83 | 31 | 0 | 91 | 173 | 1 | 83 | 1.15e-30 | 107 |
| MS.gene43075.t1 | AT2G36355 | 61.628 | 86 | 33 | 0 | 88 | 173 | 27 | 112 | 1.43e-30 | 107 |
| MS.gene43075.t1 | AT2G36355 | 44.144 | 111 | 55 | 3 | 22 | 130 | 5 | 110 | 3.07e-22 | 87.0 |
Find 30 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTAACCTCCACTAATT+TGG | 0.167435 | 2.4:-14235816 | None:intergenic |
| AGAAATTGAGAGAAGAAAAT+TGG | 0.229998 | 2.4:+14234459 | MS.gene43075:CDS |
| ATTGCAACATCCTTCCTCTT+TGG | 0.283049 | 2.4:-14235126 | None:intergenic |
| TTTCATCTCTTCTTGGACTC+TGG | 0.297684 | 2.4:-14234384 | None:intergenic |
| GGGTCAAACCTGCCAGAAAA+AGG | 0.317850 | 2.4:+14235194 | MS.gene43075:CDS |
| GTGCAACATGTGAAGAATTC+AGG | 0.351410 | 2.4:+14234346 | MS.gene43075:CDS |
| TCTAGCAATGTTTAGAGAAA+AGG | 0.359449 | 2.4:+14234432 | MS.gene43075:CDS |
| TTCTGGCAGGTTTGACCCAA+TGG | 0.366095 | 2.4:-14235189 | None:intergenic |
| AAAATTGGAGGTTAGAGATA+AGG | 0.419428 | 2.4:+14234474 | MS.gene43075:CDS |
| GAGTCCAAGAAGAGATGAAA+AGG | 0.433573 | 2.4:+14234387 | MS.gene43075:CDS |
| AACAAAGAGTTGAAGCCATT+GGG | 0.443322 | 2.4:+14235174 | MS.gene43075:CDS |
| AGAAATTGAATAGGAAATTG+AGG | 0.443344 | 2.4:+14235092 | MS.gene43075:intron |
| GAGGATAAGGATGAAGAAGC+TGG | 0.468797 | 2.4:+14235964 | MS.gene43075:CDS |
| CGAAAAGGAAACAAAGAGAT+TGG | 0.472358 | 2.4:+14234519 | MS.gene43075:CDS |
| TCAACTTGTTACCAAATTAG+TGG | 0.474598 | 2.4:+14235805 | MS.gene43075:CDS |
| GAAATTGAATAGGAAATTGA+GGG | 0.474638 | 2.4:+14235093 | MS.gene43075:intron |
| TAACAAAGAGTTGAAGCCAT+TGG | 0.493465 | 2.4:+14235173 | MS.gene43075:CDS |
| GATAAGGTTCATGCTCATCT+TGG | 0.506717 | 2.4:+14234490 | MS.gene43075:CDS |
| TCATCTTGGTCGAGTCGAAA+AGG | 0.517837 | 2.4:+14234504 | MS.gene43075:CDS |
| TGACTGAAAGTGAGAGGATA+AGG | 0.518680 | 2.4:+14235951 | MS.gene43075:CDS |
| AAGAAGAGATGAAAAGGAAG+AGG | 0.527146 | 2.4:+14234393 | MS.gene43075:CDS |
| AATTGAGAGAAGAAAATTGG+AGG | 0.531288 | 2.4:+14234462 | MS.gene43075:CDS |
| AGAATACAATGAAGCTCTTG+AGG | 0.569694 | 2.4:+14235754 | MS.gene43075:CDS |
| GTTCACAGATCCAAAGAGGA+AGG | 0.618763 | 2.4:+14235116 | MS.gene43075:CDS |
| AGCTTGTGACTGAAAGTGAG+AGG | 0.623994 | 2.4:+14235945 | MS.gene43075:intron |
| ACTTGTTACCAAATTAGTGG+AGG | 0.627774 | 2.4:+14235808 | MS.gene43075:CDS |
| AGGGGTTCACAGATCCAAAG+AGG | 0.671132 | 2.4:+14235112 | MS.gene43075:CDS |
| AAATTGAATAGGAAATTGAG+GGG | 0.691169 | 2.4:+14235094 | MS.gene43075:intron |
| GATAAGGATGAAGAAGCTGG+AGG | 0.694341 | 2.4:+14235967 | MS.gene43075:CDS |
| AGTTAGAAAGAAGATAGACA+TGG | 0.715757 | 2.4:+14235149 | MS.gene43075:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATCAAATG+TGG | + | chr2.4:14234995-14235014 | MS.gene43075:intron | 10.0% |
| !!! | TATTTTTTAAAAACAATGTA+CGG | - | chr2.4:14235649-14235668 | None:intergenic | 10.0% |
| !! | ATATGTTTATTTAGTTGTTT+AGG | + | chr2.4:14235435-14235454 | MS.gene43075:intron | 15.0% |
| !! | CAAACAAAGAATATTTATAA+TGG | - | chr2.4:14235072-14235091 | None:intergenic | 15.0% |
| !! | GAAATTAAAGCAAATAATTA+AGG | - | chr2.4:14235371-14235390 | None:intergenic | 15.0% |
| !! | TTATAATATCTTTACAACAT+AGG | + | chr2.4:14235264-14235283 | MS.gene43075:intron | 15.0% |
| !!! | AATTATTTGCTTTAATTTCT+TGG | + | chr2.4:14235372-14235391 | MS.gene43075:intron | 15.0% |
| !!! | TTGTGAAACTATATATTTTT+GGG | + | chr2.4:14235719-14235738 | MS.gene43075:intron | 15.0% |
| !! | AAAAAAGAAATATGTTAGCT+AGG | - | chr2.4:14235892-14235911 | None:intergenic | 20.0% |
| !! | ATTAAAGCAAATAATTAAGG+TGG | - | chr2.4:14235368-14235387 | None:intergenic | 20.0% |
| !! | TTTGATATTGTAGAAAATCA+CGG | + | chr2.4:14234757-14234776 | MS.gene43075:intron | 20.0% |
| !!! | CTTGTGAAACTATATATTTT+TGG | + | chr2.4:14235718-14235737 | MS.gene43075:intron | 20.0% |
| !!! | CTTTTGATGACATAATATAT+GGG | - | chr2.4:14235399-14235418 | None:intergenic | 20.0% |
| !!! | TGTGAAACTATATATTTTTG+GGG | + | chr2.4:14235720-14235739 | MS.gene43075:intron | 20.0% |
| ! | AAATTGAATAGGAAATTGAG+GGG | + | chr2.4:14235094-14235113 | MS.gene43075:intron | 25.0% |
| ! | AGAAATTGAATAGGAAATTG+AGG | + | chr2.4:14235092-14235111 | MS.gene43075:intron | 25.0% |
| ! | AGAAATTGAGAGAAGAAAAT+TGG | + | chr2.4:14234459-14234478 | MS.gene43075:CDS | 25.0% |
| ! | ATATCAAAAGCAAAACACAT+TGG | - | chr2.4:14235315-14235334 | None:intergenic | 25.0% |
| ! | ATGATGTTTCATTGTTTGTT+TGG | + | chr2.4:14234598-14234617 | MS.gene43075:intron | 25.0% |
| ! | CAAATTCAGTGTTTGTTTAT+TGG | - | chr2.4:14234565-14234584 | None:intergenic | 25.0% |
| ! | CAATGAGAAAAACAAAGAAA+AGG | + | chr2.4:14235781-14235800 | MS.gene43075:CDS | 25.0% |
| ! | CCATATATTATGTCATCAAA+AGG | + | chr2.4:14235397-14235416 | MS.gene43075:intron | 25.0% |
| ! | GAAATTGAATAGGAAATTGA+GGG | + | chr2.4:14235093-14235112 | MS.gene43075:intron | 25.0% |
| ! | TATATTATGTCATCAAAAGG+AGG | + | chr2.4:14235400-14235419 | MS.gene43075:intron | 25.0% |
| ! | TATCAAAAGCAAAACACATT+GGG | - | chr2.4:14235314-14235333 | None:intergenic | 25.0% |
| ! | TGTGCAAAGTTTCAAAATAA+CGG | + | chr2.4:14234704-14234723 | MS.gene43075:intron | 25.0% |
| ! | TTACATTTGATCTATAGTCA+AGG | + | chr2.4:14234911-14234930 | MS.gene43075:intron | 25.0% |
| !! | CTTTGTTTGAGAAATTGAAT+AGG | + | chr2.4:14235083-14235102 | MS.gene43075:intron | 25.0% |
| !!! | ATTGTTTGTTTGGTTTTTAC+TGG | + | chr2.4:14234608-14234627 | MS.gene43075:intron | 25.0% |
| !!! | CCTTTTGATGACATAATATA+TGG | - | chr2.4:14235400-14235419 | None:intergenic | 25.0% |
| !!! | TTCACTTGTTTGGTTTTTAT+TGG | + | chr2.4:14234661-14234680 | MS.gene43075:intron | 25.0% |
| AAAATTGGAGGTTAGAGATA+AGG | + | chr2.4:14234474-14234493 | MS.gene43075:CDS | 30.0% | |
| AACAGTTAGTACTAAACAGT+TGG | - | chr2.4:14235229-14235248 | None:intergenic | 30.0% | |
| AAGTTTCAAAATAACGGTCA+CGG | + | chr2.4:14234710-14234729 | MS.gene43075:intron | 30.0% | |
| AATTGAGAGAAGAAAATTGG+AGG | + | chr2.4:14234462-14234481 | MS.gene43075:CDS | 30.0% | |
| AATTTGAATTCCGTCTGTTT+CGG | - | chr2.4:14235572-14235591 | None:intergenic | 30.0% | |
| ACAATATAACGTTGAAATCG+TGG | + | chr2.4:14234830-14234849 | MS.gene43075:intron | 30.0% | |
| AGTTAGAAAGAAGATAGACA+TGG | + | chr2.4:14235149-14235168 | MS.gene43075:CDS | 30.0% | |
| ATTTCTAACCTCCACTAATT+TGG | - | chr2.4:14235819-14235838 | None:intergenic | 30.0% | |
| TAAAGCTAATCCTTAAATCC+TGG | - | chr2.4:14234894-14234913 | None:intergenic | 30.0% | |
| TCTAGCAATGTTTAGAGAAA+AGG | + | chr2.4:14234432-14234451 | MS.gene43075:CDS | 30.0% | |
| TTAAAAACAATGTACGGAAG+AGG | - | chr2.4:14235643-14235662 | None:intergenic | 30.0% | |
| ! | CTTTGCATTATGTGAACTTT+TGG | + | chr2.4:14235919-14235938 | MS.gene43075:intron | 30.0% |
| ! | TACAACATAGGATTTGTTCA+AGG | + | chr2.4:14235276-14235295 | MS.gene43075:intron | 30.0% |
| ! | TGCTGATCATATGATCTTTT+TGG | - | chr2.4:14234310-14234329 | None:intergenic | 30.0% |
| ! | TGGAAAATCTAACCTTTTTC+TGG | - | chr2.4:14235209-14235228 | None:intergenic | 30.0% |
| !! | TCAACTTGTTACCAAATTAG+TGG | + | chr2.4:14235805-14235824 | MS.gene43075:CDS | 30.0% |
| !! | TTTTAAAAAACGGTCTGCAA+CGG | - | chr2.4:14234865-14234884 | None:intergenic | 30.0% |
| !!! | CTATATATTTTTGGGGTTAC+AGG | + | chr2.4:14235727-14235746 | MS.gene43075:intron | 30.0% |
| !!! | CTGGTCAAGGTTTTAAAAAA+CGG | - | chr2.4:14234875-14234894 | None:intergenic | 30.0% |
| AAAACCTTGACCAGGATTTA+AGG | + | chr2.4:14234881-14234900 | MS.gene43075:intron | 35.0% | |
| AACAAAGAGTTGAAGCCATT+GGG | + | chr2.4:14235174-14235193 | MS.gene43075:CDS | 35.0% | |
| AAGAAGAGATGAAAAGGAAG+AGG | + | chr2.4:14234393-14234412 | MS.gene43075:CDS | 35.0% | |
| AGAATACAATGAAGCTCTTG+AGG | + | chr2.4:14235754-14235773 | MS.gene43075:CDS | 35.0% | |
| AGACTAAAGTCTAAGCAATG+TGG | - | chr2.4:14235340-14235359 | None:intergenic | 35.0% | |
| CAATATCAAAGATTACTGCG+TGG | - | chr2.4:14234747-14234766 | None:intergenic | 35.0% | |
| CGAAAAGGAAACAAAGAGAT+TGG | + | chr2.4:14234519-14234538 | MS.gene43075:CDS | 35.0% | |
| CGGAATTCAAATTTCTCAGT+TGG | + | chr2.4:14235579-14235598 | MS.gene43075:intron | 35.0% | |
| TAACAAAGAGTTGAAGCCAT+TGG | + | chr2.4:14235173-14235192 | MS.gene43075:CDS | 35.0% | |
| TAATCCTTAAATCCTGGTCA+AGG | - | chr2.4:14234888-14234907 | None:intergenic | 35.0% | |
| TAGCGACCACAATTTGATAT+CGG | + | chr2.4:14234805-14234824 | MS.gene43075:intron | 35.0% | |
| TGTGCAAAGTTTCACTTGTT+TGG | + | chr2.4:14234651-14234670 | MS.gene43075:intron | 35.0% | |
| TTGTCACCGATATCAAATTG+TGG | - | chr2.4:14234814-14234833 | None:intergenic | 35.0% | |
| ! | ACTTGTTACCAAATTAGTGG+AGG | + | chr2.4:14235808-14235827 | MS.gene43075:CDS | 35.0% |
| ! | TCTTCCTTTTCATCTCTTCT+TGG | - | chr2.4:14234394-14234413 | None:intergenic | 35.0% |
| !! | AAATCTAACCTTTTTCTGGC+AGG | - | chr2.4:14235205-14235224 | None:intergenic | 35.0% |
| !! | CTAACTAGCTTGTTTCATAC+AGG | - | chr2.4:14234964-14234983 | None:intergenic | 35.0% |
| !!! | CGTTTTTTAAAACCTTGACC+AGG | + | chr2.4:14234873-14234892 | MS.gene43075:intron | 35.0% |
| ATTGCAACATCCTTCCTCTT+TGG | - | chr2.4:14235129-14235148 | None:intergenic | 40.0% | |
| GACTTTGTAACCGAAACAGA+CGG | + | chr2.4:14235559-14235578 | MS.gene43075:intron | 40.0% | |
| GAGTCCAAGAAGAGATGAAA+AGG | + | chr2.4:14234387-14234406 | MS.gene43075:CDS | 40.0% | |
| GATAAGGTTCATGCTCATCT+TGG | + | chr2.4:14234490-14234509 | MS.gene43075:CDS | 40.0% | |
| GTCAATCTCTTACCACCAAA+CGG | - | chr2.4:14235542-14235561 | None:intergenic | 40.0% | |
| GTGCAACATGTGAAGAATTC+AGG | + | chr2.4:14234346-14234365 | MS.gene43075:CDS | 40.0% | |
| TCAAATTGTGGTCGCTATTG+CGG | - | chr2.4:14234802-14234821 | None:intergenic | 40.0% | |
| TGACTGAAAGTGAGAGGATA+AGG | + | chr2.4:14235951-14235970 | MS.gene43075:CDS | 40.0% | |
| TTTCATCTCTTCTTGGACTC+TGG | - | chr2.4:14234387-14234406 | None:intergenic | 40.0% | |
| AGCTTGTGACTGAAAGTGAG+AGG | + | chr2.4:14235945-14235964 | MS.gene43075:intron | 45.0% | |
| ATCTCTTACCACCAAACGGA+AGG | - | chr2.4:14235538-14235557 | None:intergenic | 45.0% | |
| GAGGATAAGGATGAAGAAGC+TGG | + | chr2.4:14235964-14235983 | MS.gene43075:CDS | 45.0% | |
| GATAAGGATGAAGAAGCTGG+AGG | + | chr2.4:14235967-14235986 | MS.gene43075:CDS | 45.0% | |
| GTTCACAGATCCAAAGAGGA+AGG | + | chr2.4:14235116-14235135 | MS.gene43075:CDS | 45.0% | |
| TCATCTTGGTCGAGTCGAAA+AGG | + | chr2.4:14234504-14234523 | MS.gene43075:CDS | 45.0% | |
| TGCTTCTTGTTCCTTCCGTT+TGG | + | chr2.4:14235524-14235543 | MS.gene43075:intron | 45.0% | |
| TTCTTGTTCCTTCCGTTTGG+TGG | + | chr2.4:14235527-14235546 | MS.gene43075:intron | 45.0% | |
| AGGGGTTCACAGATCCAAAG+AGG | + | chr2.4:14235112-14235131 | MS.gene43075:CDS | 50.0% | |
| GGGTCAAACCTGCCAGAAAA+AGG | + | chr2.4:14235194-14235213 | MS.gene43075:CDS | 50.0% | |
| TTCTGGCAGGTTTGACCCAA+TGG | - | chr2.4:14235192-14235211 | None:intergenic | 50.0% | |
| ! | TAACGGTCACGGTCGCTTTG+CGG | + | chr2.4:14234721-14234740 | MS.gene43075:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 14234298 | 14236021 | 14234298 | ID=MS.gene43075 |
| chr2.4 | mRNA | 14234298 | 14236021 | 14234298 | ID=MS.gene43075.t1;Parent=MS.gene43075 |
| chr2.4 | exon | 14234298 | 14234555 | 14234298 | ID=MS.gene43075.t1.exon1;Parent=MS.gene43075.t1 |
| chr2.4 | CDS | 14234298 | 14234555 | 14234298 | ID=cds.MS.gene43075.t1;Parent=MS.gene43075.t1 |
| chr2.4 | exon | 14235105 | 14235215 | 14235105 | ID=MS.gene43075.t1.exon2;Parent=MS.gene43075.t1 |
| chr2.4 | CDS | 14235105 | 14235215 | 14235105 | ID=cds.MS.gene43075.t1;Parent=MS.gene43075.t1 |
| chr2.4 | exon | 14235749 | 14235829 | 14235749 | ID=MS.gene43075.t1.exon3;Parent=MS.gene43075.t1 |
| chr2.4 | CDS | 14235749 | 14235829 | 14235749 | ID=cds.MS.gene43075.t1;Parent=MS.gene43075.t1 |
| chr2.4 | exon | 14235947 | 14236021 | 14235947 | ID=MS.gene43075.t1.exon4;Parent=MS.gene43075.t1 |
| chr2.4 | CDS | 14235947 | 14236021 | 14235947 | ID=cds.MS.gene43075.t1;Parent=MS.gene43075.t1 |
| Gene Sequence |
| Protein sequence |
