Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08779.t1 | AET04181.1 | 95.3 | 365 | 17 | 0 | 51 | 415 | 124 | 488 | 5.30E-193 | 683.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08779.t1 | G7LHY7 | 95.3 | 365 | 17 | 0 | 51 | 415 | 124 | 488 | 3.8e-193 | 683.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene08779 | 0.839958 | 1.16E-57 | -1.69E-46 |
| MS.gene049150 | MS.gene08779 | 0.87201 | 4.41E-67 | -1.69E-46 |
| MS.gene049151 | MS.gene08779 | 0.843112 | 1.71E-58 | -1.69E-46 |
| MS.gene049153 | MS.gene08779 | 0.861935 | 7.23E-64 | -1.69E-46 |
| MS.gene049170 | MS.gene08779 | 0.83989 | 1.21E-57 | -1.69E-46 |
| MS.gene049230 | MS.gene08779 | 0.837828 | 4.13E-57 | -1.69E-46 |
| MS.gene049260 | MS.gene08779 | 0.808514 | 2.98E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene08779 | 0.859958 | 2.88E-63 | -1.69E-46 |
| MS.gene049758 | MS.gene08779 | 0.83015 | 3.45E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene08779 | 0.818935 | 1.51E-52 | -1.69E-46 |
| MS.gene050060 | MS.gene08779 | 0.839412 | 1.61E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene08779 | 0.815168 | 1.06E-51 | -1.69E-46 |
| MS.gene050133 | MS.gene08779 | -0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene08779 | 0.818739 | 1.68E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene08779 | 0.82029 | 7.42E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene08779 | 0.816234 | 6.14E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene08779 | 0.820668 | 6.07E-53 | -1.69E-46 |
| MS.gene050398 | MS.gene08779 | 0.810587 | 1.07E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene08779 | -0.88692 | 2.25E-72 | -1.69E-46 |
| MS.gene050464 | MS.gene08779 | 0.80008 | 1.70E-48 | -1.69E-46 |
| MS.gene050529 | MS.gene08779 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene08779 | -0.828352 | 9.43E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene08779 | 0.879145 | 1.58E-69 | -1.69E-46 |
| MS.gene050670 | MS.gene08779 | 0.824014 | 1.02E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene08779 | 0.833212 | 6.07E-56 | -1.69E-46 |
| MS.gene051373 | MS.gene08779 | 0.834184 | 3.47E-56 | -1.69E-46 |
| MS.gene051521 | MS.gene08779 | 0.816983 | 4.17E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene08779 | 0.826537 | 2.57E-54 | -1.69E-46 |
| MS.gene051535 | MS.gene08779 | 0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene08779 | 0.849132 | 3.93E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene08779 | 0.920333 | 1.46E-87 | -1.69E-46 |
| MS.gene052011 | MS.gene08779 | -0.85829 | 9.12E-63 | -1.69E-46 |
| MS.gene052077 | MS.gene08779 | 0.897572 | 1.23E-76 | -1.69E-46 |
| MS.gene052134 | MS.gene08779 | 0.822108 | 2.82E-53 | -1.69E-46 |
| MS.gene052135 | MS.gene08779 | 0.834687 | 2.60E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene08779 | 0.817419 | 3.33E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene08779 | 0.866557 | 2.61E-65 | -1.69E-46 |
| MS.gene052253 | MS.gene08779 | 0.836889 | 7.18E-57 | -1.69E-46 |
| MS.gene052255 | MS.gene08779 | 0.800496 | 1.40E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene08779 | 0.872282 | 3.59E-67 | -1.69E-46 |
| MS.gene052389 | MS.gene08779 | 0.819935 | 8.94E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene08779 | 0.845073 | 5.10E-59 | -1.69E-46 |
| MS.gene053073 | MS.gene08779 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene08779 | 0.853045 | 3.10E-61 | -1.69E-46 |
| MS.gene053176 | MS.gene08779 | 0.825988 | 3.47E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene08779 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene08779 | 0.862121 | 6.34E-64 | -1.69E-46 |
| MS.gene053557 | MS.gene08779 | 0.832897 | 7.27E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene08779 | 0.846235 | 2.47E-59 | -1.69E-46 |
| MS.gene053928 | MS.gene08779 | 0.852748 | 3.77E-61 | -1.69E-46 |
| MS.gene054183 | MS.gene08779 | 0.854794 | 9.71E-62 | -1.69E-46 |
| MS.gene054349 | MS.gene08779 | 0.864692 | 1.01E-64 | -1.69E-46 |
| MS.gene054548 | MS.gene08779 | 0.803859 | 2.85E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene08779 | 0.843261 | 1.56E-58 | -1.69E-46 |
| MS.gene054719 | MS.gene08779 | 0.822268 | 2.59E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene08779 | 0.864673 | 1.03E-64 | -1.69E-46 |
| MS.gene054983 | MS.gene08779 | 0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene08779 | 0.820313 | 7.33E-53 | -1.69E-46 |
| MS.gene055367 | MS.gene08779 | 0.825546 | 4.42E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene08779 | 0.828531 | 8.54E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene08779 | 0.890553 | 8.88E-74 | -1.69E-46 |
| MS.gene05556 | MS.gene08779 | 0.829343 | 5.43E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene08779 | 0.829489 | 5.00E-55 | -1.69E-46 |
| MS.gene055666 | MS.gene08779 | 0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene08779 | 0.853837 | 1.84E-61 | -1.69E-46 |
| MS.gene055859 | MS.gene08779 | 0.816285 | 5.98E-52 | -1.69E-46 |
| MS.gene05595 | MS.gene08779 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene056233 | MS.gene08779 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene056447 | MS.gene08779 | 0.820682 | 6.03E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene08779 | 0.809116 | 2.22E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene08779 | 0.875487 | 2.97E-68 | -1.69E-46 |
| MS.gene056723 | MS.gene08779 | 0.865805 | 4.52E-65 | -1.69E-46 |
| MS.gene056899 | MS.gene08779 | -0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene08779 | 0.909425 | 5.78E-82 | -1.69E-46 |
| MS.gene057121 | MS.gene08779 | 0.800393 | 1.47E-48 | -1.69E-46 |
| MS.gene057124 | MS.gene08779 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene08779 | 0.905605 | 3.60E-80 | -1.69E-46 |
| MS.gene057448 | MS.gene08779 | 0.820285 | 7.44E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene08779 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene08779 | 0.801216 | 1.00E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene08779 | 0.83369 | 4.61E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene08779 | 0.828066 | 1.11E-54 | -1.69E-46 |
| MS.gene058139 | MS.gene08779 | 0.826034 | 3.38E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene08779 | 0.897882 | 9.13E-77 | -1.69E-46 |
| MS.gene058276 | MS.gene08779 | 0.82642 | 2.74E-54 | -1.69E-46 |
| MS.gene058435 | MS.gene08779 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene08779 | 0.805022 | 1.63E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene08779 | 0.859724 | 3.39E-63 | -1.69E-46 |
| MS.gene058749 | MS.gene08779 | 0.820011 | 8.59E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene08779 | 0.828852 | 7.14E-55 | -1.69E-46 |
| MS.gene059011 | MS.gene08779 | 0.806847 | 6.74E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene08779 | 0.825032 | 5.85E-54 | -1.69E-46 |
| MS.gene059247 | MS.gene08779 | 0.85474 | 1.01E-61 | -1.69E-46 |
| MS.gene059285 | MS.gene08779 | 0.873859 | 1.06E-67 | -1.69E-46 |
| MS.gene059420 | MS.gene08779 | 0.856777 | 2.56E-62 | -1.69E-46 |
| MS.gene059609 | MS.gene08779 | 0.8179 | 2.59E-52 | -1.69E-46 |
| MS.gene059788 | MS.gene08779 | 0.858752 | 6.64E-63 | -1.69E-46 |
| MS.gene05984 | MS.gene08779 | 0.859541 | 3.85E-63 | -1.69E-46 |
| MS.gene059894 | MS.gene08779 | 0.833734 | 4.50E-56 | -1.69E-46 |
| MS.gene059899 | MS.gene08779 | 0.832143 | 1.12E-55 | -1.69E-46 |
| MS.gene059946 | MS.gene08779 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene060083 | MS.gene08779 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene08779 | 0.821287 | 4.38E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene08779 | 0.826943 | 2.05E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene08779 | 0.804016 | 2.64E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene08779 | 0.82374 | 1.18E-53 | -1.69E-46 |
| MS.gene060942 | MS.gene08779 | 0.813837 | 2.09E-51 | -1.69E-46 |
| MS.gene060943 | MS.gene08779 | 0.814138 | 1.79E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene08779 | 0.807541 | 4.81E-50 | -1.69E-46 |
| MS.gene061002 | MS.gene08779 | 0.841273 | 5.25E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene08779 | 0.843012 | 1.82E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene08779 | -0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene08779 | 0.849848 | 2.48E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene08779 | 0.860564 | 1.89E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08779.t1 | MTR_8g085620 | 93.990 | 416 | 24 | 1 | 1 | 415 | 73 | 488 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08779.t1 | AT1G55280 | 47.355 | 397 | 180 | 10 | 20 | 408 | 14 | 389 | 1.37e-107 | 323 |
| MS.gene08779.t1 | AT1G55280 | 47.355 | 397 | 180 | 10 | 20 | 408 | 59 | 434 | 3.38e-107 | 323 |
Find 92 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAGACTTGAGGCTATT+TGG | 0.152892 | 4.2:+12788243 | MS.gene08779:CDS |
| AAAATTAGTATCAGAGAATT+TGG | 0.170887 | 4.2:-12786896 | None:intergenic |
| AACTTCTGCCCAAGTGTTAT+AGG | 0.239524 | 4.2:-12789781 | None:intergenic |
| ATAAATCCAAATCTTTATTC+AGG | 0.239984 | 4.2:+12788015 | MS.gene08779:CDS |
| GTAAGTGTGGCATTGACTTT+AGG | 0.270375 | 4.2:+12789628 | MS.gene08779:CDS |
| CTTGACCCTGAATAAAGATT+TGG | 0.283207 | 4.2:-12788021 | None:intergenic |
| ATTTGGGTCGGTGTTGATTC+AGG | 0.287536 | 4.2:+12788260 | MS.gene08779:CDS |
| ATTCCAACTATGATATCTTT+TGG | 0.298685 | 4.2:-12789709 | None:intergenic |
| ATTCATCAACAGAACCTCTT+TGG | 0.299534 | 4.2:-12788199 | None:intergenic |
| TAAGTGTGGCATTGACTTTA+GGG | 0.316132 | 4.2:+12789629 | MS.gene08779:CDS |
| CACTGGTATTCTCTTCAATA+TGG | 0.322369 | 4.2:-12788129 | None:intergenic |
| CCTTTGAGATGACAGGAGTT+TGG | 0.322539 | 4.2:-12789348 | None:intergenic |
| TGCAAGACTTGAGGCTATTT+GGG | 0.323891 | 4.2:+12788244 | MS.gene08779:CDS |
| GCTTTCTTTGTTGGTGGGAT+TGG | 0.336342 | 4.2:+12789487 | MS.gene08779:CDS |
| ACCGATCATTCTACAGAATC+AGG | 0.346191 | 4.2:+12788161 | MS.gene08779:CDS |
| GGAACTGATGCATTATTTAG+AGG | 0.356287 | 4.2:+12789589 | MS.gene08779:CDS |
| ACCGGGTTCGCTTTCTTTGT+TGG | 0.369998 | 4.2:+12789478 | MS.gene08779:CDS |
| TATGGTGGTACCTCTTCTTC+TGG | 0.372818 | 4.2:-12789169 | None:intergenic |
| ACCTCTTCTTCTGGCAATGA+TGG | 0.373177 | 4.2:-12789160 | None:intergenic |
| TTCAGAATTTATGACTGTTA+AGG | 0.381614 | 4.2:-12789131 | None:intergenic |
| ATTTGAGCCATATAAGTTGC+TGG | 0.397282 | 4.2:-12788051 | None:intergenic |
| TTGGTTACCAGCAACTTATA+TGG | 0.399396 | 4.2:+12788044 | MS.gene08779:CDS |
| CTTTCTTCCTTTGAGATGAC+AGG | 0.409228 | 4.2:-12789355 | None:intergenic |
| CCAATACGACTTTCGAATTG+AGG | 0.415792 | 4.2:+12789201 | MS.gene08779:CDS |
| TTCTTTGTTGGTGGGATTGG+AGG | 0.421123 | 4.2:+12789490 | MS.gene08779:CDS |
| AGGTATGTGGACGGATTGCC+AGG | 0.423984 | 4.2:+12789538 | MS.gene08779:CDS |
| CTATGCTTGATAGACGTAGA+TGG | 0.426250 | 4.2:+12788101 | MS.gene08779:CDS |
| TGCATTATTTAGAGGATTGA+AGG | 0.430785 | 4.2:+12789597 | MS.gene08779:CDS |
| ACACTTGGGCAGAAGTTACT+TGG | 0.431685 | 4.2:+12789787 | MS.gene08779:CDS |
| CCTCAATTCGAAAGTCGTAT+TGG | 0.435999 | 4.2:-12789201 | None:intergenic |
| CTCTCAGCTGGTGAAAATAC+CGG | 0.436324 | 4.2:+12789460 | MS.gene08779:CDS |
| TCAAGCTGAGTCACAAGGTT+AGG | 0.450248 | 4.2:-12789271 | None:intergenic |
| TTCCTCTAAGGTCAGGTCAA+TGG | 0.462389 | 4.2:+12789092 | MS.gene08779:intron |
| ACACCAAAAGATATCATAGT+TGG | 0.465828 | 4.2:+12789706 | MS.gene08779:CDS |
| AATATAAGTGACTTCAATGC+TGG | 0.469726 | 4.2:+12788071 | MS.gene08779:CDS |
| TGGCAAAACAACTGATGGTC+TGG | 0.469882 | 4.2:-12787928 | None:intergenic |
| AACCTTGTGACTCAGCTTGA+AGG | 0.472386 | 4.2:+12789274 | MS.gene08779:CDS |
| GGTTCGCTTTCTTTGTTGGT+GGG | 0.473259 | 4.2:+12789482 | MS.gene08779:CDS |
| GATATCATAGTTGGAATGAT+GGG | 0.476033 | 4.2:+12789715 | MS.gene08779:CDS |
| TCGTATTGGAAGCCGGTGTA+TGG | 0.480131 | 4.2:-12789187 | None:intergenic |
| AGATATCATAGTTGGAATGA+TGG | 0.485907 | 4.2:+12789714 | MS.gene08779:CDS |
| CGAATTGAGGATGCATTGCT+TGG | 0.486399 | 4.2:+12789214 | MS.gene08779:CDS |
| ATCTTTATTCAGGGTCAAGT+TGG | 0.488774 | 4.2:+12788025 | MS.gene08779:CDS |
| GCATTTAAGCCTATAACACT+TGG | 0.489741 | 4.2:+12789772 | MS.gene08779:CDS |
| TAAATCCAAATCTTTATTCA+GGG | 0.498208 | 4.2:+12788016 | MS.gene08779:CDS |
| TGTATCTGCTATTGTTGCAG+AGG | 0.499344 | 4.2:+12789518 | MS.gene08779:CDS |
| GGGTTCGCTTTCTTTGTTGG+TGG | 0.499672 | 4.2:+12789481 | MS.gene08779:CDS |
| GTCAATGCCACACTTACTAT+AGG | 0.502910 | 4.2:-12789622 | None:intergenic |
| TCAATTGCTTCCCTCTCAGC+TGG | 0.512231 | 4.2:+12789448 | MS.gene08779:CDS |
| ATGTAAAGTTTCTGTGGTGT+TGG | 0.512933 | 4.2:+12789747 | MS.gene08779:CDS |
| TACTTTATCTTCCCTTGAGG+AGG | 0.516988 | 4.2:+12787992 | MS.gene08779:CDS |
| CATACTTTCACGTCAGAGGC+TGG | 0.524216 | 4.2:-12787948 | None:intergenic |
| CCCTGATTCTGTAGAATGAT+CGG | 0.525561 | 4.2:-12788162 | None:intergenic |
| ACCAACAAAGAAAGCGAACC+CGG | 0.525652 | 4.2:-12789479 | None:intergenic |
| ACTTGAAATTCTTCTAGAAG+AGG | 0.530331 | 4.2:-12786845 | None:intergenic |
| ATTTGGATTTATCCTCCTCA+AGG | 0.531242 | 4.2:-12788004 | None:intergenic |
| GATATACTTCATTTCCAAAG+AGG | 0.531996 | 4.2:+12788185 | MS.gene08779:CDS |
| TAACAGTCATAAATTCTGAA+TGG | 0.537218 | 4.2:+12789134 | MS.gene08779:CDS |
| ACCTTGTGACTCAGCTTGAA+GGG | 0.543737 | 4.2:+12789275 | MS.gene08779:CDS |
| GCATTATTTAGAGGATTGAA+GGG | 0.551480 | 4.2:+12789598 | MS.gene08779:CDS |
| TTTGTAGTGAAGTATAGCTC+AGG | 0.553123 | 4.2:+12789661 | MS.gene08779:CDS |
| AGACTTGAGGCTATTTGGGT+CGG | 0.558381 | 4.2:+12788248 | MS.gene08779:CDS |
| TCTTGCATGTAAAGTTTCTG+TGG | 0.561151 | 4.2:+12789741 | MS.gene08779:CDS |
| ACCATCATTGCCAGAAGAAG+AGG | 0.565997 | 4.2:+12789159 | MS.gene08779:CDS |
| GAGGCTGGCAAAACAACTGA+TGG | 0.567913 | 4.2:-12787933 | None:intergenic |
| TTGTGAATGAGTGAAGTTGA+AGG | 0.568987 | 4.2:-12786787 | None:intergenic |
| TGATCGGTCATCAAACTCAC+TGG | 0.570085 | 4.2:-12788146 | None:intergenic |
| GCTATTGTTGCAGAGGTATG+TGG | 0.570298 | 4.2:+12789525 | MS.gene08779:CDS |
| AGGTCAGGTCAATGGAGACT+AGG | 0.573348 | 4.2:+12789100 | MS.gene08779:intron |
| TCGAAAGTCGTATTGGAAGC+CGG | 0.576014 | 4.2:-12789194 | None:intergenic |
| CATCTCAAAGGAAGAAAGCA+TGG | 0.576259 | 4.2:+12789360 | MS.gene08779:CDS |
| CCGATCATTCTACAGAATCA+GGG | 0.579731 | 4.2:+12788162 | MS.gene08779:CDS |
| CCAAACTCCTGTCATCTCAA+AGG | 0.580577 | 4.2:+12789348 | MS.gene08779:CDS |
| TGTGACTCAGCTTGAAGGGA+CGG | 0.586916 | 4.2:+12789279 | MS.gene08779:CDS |
| AGGAACTGATCTATCCATGT+TGG | 0.588578 | 4.2:+12789240 | MS.gene08779:CDS |
| CATCTACGTCTATCAAGCAT+AGG | 0.594306 | 4.2:-12788100 | None:intergenic |
| AAATACTTTATCTTCCCTTG+AGG | 0.599620 | 4.2:+12787989 | MS.gene08779:CDS |
| TGTGCATACTTTCACGTCAG+AGG | 0.601261 | 4.2:-12787952 | None:intergenic |
| TTTGGATTTATCCTCCTCAA+GGG | 0.602029 | 4.2:-12788003 | None:intergenic |
| TCTCAGCTGGTGAAAATACC+GGG | 0.602142 | 4.2:+12789461 | MS.gene08779:CDS |
| TATTGGAAGCCGGTGTATGG+TGG | 0.603889 | 4.2:-12789184 | None:intergenic |
| AAATTAATCACAAGCAACAA+AGG | 0.606917 | 4.2:+12789565 | MS.gene08779:CDS |
| GAGGATGCATTGCTTGGTGA+AGG | 0.609971 | 4.2:+12789220 | MS.gene08779:CDS |
| CATTTAAGCCTATAACACTT+GGG | 0.611508 | 4.2:+12789773 | MS.gene08779:CDS |
| GAAGGGTCCTATAGTAAGTG+TGG | 0.617641 | 4.2:+12789615 | MS.gene08779:CDS |
| TCCCTTCAAGCTGAGTCACA+AGG | 0.621122 | 4.2:-12789276 | None:intergenic |
| CGATCATTCTACAGAATCAG+GGG | 0.632486 | 4.2:+12788163 | MS.gene08779:CDS |
| GTTAGGTCTTAATTCCAACA+TGG | 0.676496 | 4.2:-12789254 | None:intergenic |
| TTAATCACAAGCAACAAAGG+AGG | 0.678453 | 4.2:+12789568 | MS.gene08779:CDS |
| TTGTTGCAGAGGTATGTGGA+CGG | 0.680400 | 4.2:+12789529 | MS.gene08779:CDS |
| GAAGAGGTACCACCATACAC+CGG | 0.692574 | 4.2:+12789175 | MS.gene08779:CDS |
| CTCAAAGGAAGAAAGCATGG+AGG | 0.740445 | 4.2:+12789363 | MS.gene08779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAAGTACTTTATT+TGG | - | chr4.2:12787797-12787816 | None:intergenic | 10.0% |
| !!! | AAATATATGATTCAAAATTT+TGG | + | chr4.2:12787094-12787113 | MS.gene08779:intron | 10.0% |
| !!! | AATATAGAAATTTAAAGTTT+TGG | - | chr4.2:12788979-12788998 | None:intergenic | 10.0% |
| !!! | ATTAAAAATCTTAACTTTTA+AGG | + | chr4.2:12786955-12786974 | MS.gene08779:intron | 10.0% |
| !!! | ATTCTAGTATATATTTTTTT+TGG | + | chr4.2:12788289-12788308 | MS.gene08779:intron | 10.0% |
| !! | TTTCAAAAATAAAATATGTG+AGG | - | chr4.2:12787318-12787337 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTGTTAAAGTAT+TGG | + | chr4.2:12787288-12787307 | MS.gene08779:intron | 15.0% |
| !! | AAAATTAGTATCAGAGAATT+TGG | - | chr4.2:12786899-12786918 | None:intergenic | 20.0% |
| !! | AACTTTCTAAATTGTTAACA+GGG | + | chr4.2:12788494-12788513 | MS.gene08779:intron | 20.0% |
| !! | ATAAATCCAAATCTTTATTC+AGG | + | chr4.2:12788015-12788034 | MS.gene08779:CDS | 20.0% |
| !! | ATATTATTAACCATGATTTC+AGG | - | chr4.2:12788671-12788690 | None:intergenic | 20.0% |
| !! | ATATTGTTTGAACATCAATT+TGG | - | chr4.2:12788834-12788853 | None:intergenic | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | + | chr4.2:12788545-12788564 | MS.gene08779:intron | 20.0% |
| !! | GTATATTAAATATTTCAGTG+TGG | + | chr4.2:12787393-12787412 | MS.gene08779:intron | 20.0% |
| !! | GTTAATAATATTCGAATTCA+TGG | + | chr4.2:12788680-12788699 | MS.gene08779:intron | 20.0% |
| !! | TAAATCCAAATCTTTATTCA+GGG | + | chr4.2:12788016-12788035 | MS.gene08779:CDS | 20.0% |
| !! | TAACATTTCTGTTTAAAAAC+TGG | - | chr4.2:12788441-12788460 | None:intergenic | 20.0% |
| !! | TATTGTTTGAACATCAATTT+GGG | - | chr4.2:12788833-12788852 | None:intergenic | 20.0% |
| !!! | AAATTGTAACTTTTGTAACA+CGG | - | chr4.2:12787568-12787587 | None:intergenic | 20.0% |
| !!! | AATTTTGGAGGTATTTTTAT+TGG | + | chr4.2:12787109-12787128 | MS.gene08779:intron | 20.0% |
| !!! | ATAGAAATTTAAAGTTTTGG+AGG | - | chr4.2:12788976-12788995 | None:intergenic | 20.0% |
| !!! | TACATATAACAAATGACTTT+TGG | - | chr4.2:12787828-12787847 | None:intergenic | 20.0% |
| !!! | TATATGATTCAAAATTTTGG+AGG | + | chr4.2:12787097-12787116 | MS.gene08779:intron | 20.0% |
| !!! | TCTTTTTTGAACAAACTTAT+AGG | - | chr4.2:12789307-12789326 | None:intergenic | 20.0% |
| !!! | TGATGTTCAAACAATATTTT+TGG | + | chr4.2:12788837-12788856 | MS.gene08779:intron | 20.0% |
| !!! | TTAACTGTTCTCTTTATTTT+GGG | + | chr4.2:12787000-12787019 | MS.gene08779:intron | 20.0% |
| !!! | TTTAACTGTTCTCTTTATTT+TGG | + | chr4.2:12786999-12787018 | MS.gene08779:intron | 20.0% |
| !!! | TTTAGAGTTTGAAAAGATAA+CGG | + | chr4.2:12787585-12787604 | MS.gene08779:intron | 20.0% |
| ! | AAATTAATCACAAGCAACAA+AGG | + | chr4.2:12789565-12789584 | MS.gene08779:CDS | 25.0% |
| ! | AAATTGTATTTCCTGACATT+TGG | + | chr4.2:12788407-12788426 | MS.gene08779:intron | 25.0% |
| ! | ATAATATTCGAATTCATGGT+TGG | + | chr4.2:12788684-12788703 | MS.gene08779:intron | 25.0% |
| ! | ATTTGAACACTTGAAAATCA+AGG | - | chr4.2:12788630-12788649 | None:intergenic | 25.0% |
| ! | ATTTGATGTTTGCCTATATA+TGG | + | chr4.2:12787214-12787233 | MS.gene08779:intron | 25.0% |
| ! | CAACTTTCTAAATTGTTAAC+AGG | + | chr4.2:12788493-12788512 | MS.gene08779:intron | 25.0% |
| ! | GAAGCTTGAAAAATTAATGT+TGG | + | chr4.2:12789028-12789047 | MS.gene08779:intron | 25.0% |
| ! | GAGTACTTAATGATTATAGT+TGG | + | chr4.2:12787417-12787436 | MS.gene08779:intron | 25.0% |
| ! | GTTAATCACGTTTAAATTTG+TGG | - | chr4.2:12788608-12788627 | None:intergenic | 25.0% |
| ! | TAACAGTCATAAATTCTGAA+TGG | + | chr4.2:12789134-12789153 | MS.gene08779:CDS | 25.0% |
| ! | TAACGAAGAAATTAAGAAGT+GGG | - | chr4.2:12786931-12786950 | None:intergenic | 25.0% |
| ! | TATTTAATATACCACTTGCT+AGG | - | chr4.2:12787385-12787404 | None:intergenic | 25.0% |
| ! | TCATCATATATGCCATATAT+AGG | - | chr4.2:12787229-12787248 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTACATATAGT+TGG | + | chr4.2:12788641-12788660 | MS.gene08779:intron | 25.0% |
| ! | TGTTTGTAGTTATTATTGTC+AGG | + | chr4.2:12787359-12787378 | MS.gene08779:intron | 25.0% |
| ! | TTAACGAAGAAATTAAGAAG+TGG | - | chr4.2:12786932-12786951 | None:intergenic | 25.0% |
| ! | TTCAGAATTTATGACTGTTA+AGG | - | chr4.2:12789134-12789153 | None:intergenic | 25.0% |
| !! | AAGGTTTAGTTTCACTTAAA+TGG | + | chr4.2:12786974-12786993 | MS.gene08779:intron | 25.0% |
| !! | ATTCCAACTATGATATCTTT+TGG | - | chr4.2:12789712-12789731 | None:intergenic | 25.0% |
| !! | TTCTCTGATACTAATTTTCA+AGG | + | chr4.2:12786901-12786920 | MS.gene08779:CDS | 25.0% |
| !!! | GTTGATGAATTCATTTTTGA+GGG | + | chr4.2:12788212-12788231 | MS.gene08779:CDS | 25.0% |
| !!! | TGATTATAGTTGGTTAGTTT+TGG | + | chr4.2:12787427-12787446 | MS.gene08779:intron | 25.0% |
| !!! | TGTTGATGAATTCATTTTTG+AGG | + | chr4.2:12788211-12788230 | MS.gene08779:CDS | 25.0% |
| AAATACTTTATCTTCCCTTG+AGG | + | chr4.2:12787989-12788008 | MS.gene08779:CDS | 30.0% | |
| AACGAAGAAATTAAGAAGTG+GGG | - | chr4.2:12786930-12786949 | None:intergenic | 30.0% | |
| AAGACCATGCTAATATAAAC+CGG | - | chr4.2:12787723-12787742 | None:intergenic | 30.0% | |
| AATATAAGTGACTTCAATGC+TGG | + | chr4.2:12788071-12788090 | MS.gene08779:CDS | 30.0% | |
| AATATTTACTCCAAGAAGCA+TGG | - | chr4.2:12787769-12787788 | None:intergenic | 30.0% | |
| ACACCAAAAGATATCATAGT+TGG | + | chr4.2:12789706-12789725 | MS.gene08779:CDS | 30.0% | |
| ACAGCACTTCAAAAAATTTG+AGG | - | chr4.2:12788386-12788405 | None:intergenic | 30.0% | |
| AGATATCATAGTTGGAATGA+TGG | + | chr4.2:12789714-12789733 | MS.gene08779:CDS | 30.0% | |
| ATATAGGCAAACATCAAATC+AGG | - | chr4.2:12787213-12787232 | None:intergenic | 30.0% | |
| CAGCACTTCAAAAAATTTGA+GGG | - | chr4.2:12788385-12788404 | None:intergenic | 30.0% | |
| CATTTAAGCCTATAACACTT+GGG | + | chr4.2:12789773-12789792 | MS.gene08779:CDS | 30.0% | |
| GACTTCAAAATTGAAGGTTA+AGG | - | chr4.2:12788341-12788360 | None:intergenic | 30.0% | |
| GATATACTTCATTTCCAAAG+AGG | + | chr4.2:12788185-12788204 | MS.gene08779:CDS | 30.0% | |
| GATATCATAGTTGGAATGAT+GGG | + | chr4.2:12789715-12789734 | MS.gene08779:CDS | 30.0% | |
| GCATTATTTAGAGGATTGAA+GGG | + | chr4.2:12789598-12789617 | MS.gene08779:CDS | 30.0% | |
| GTAGTTCAATAAGTAGTTAG+TGG | - | chr4.2:12788754-12788773 | None:intergenic | 30.0% | |
| TAAAGGGACTTCAAAATTGA+AGG | - | chr4.2:12788347-12788366 | None:intergenic | 30.0% | |
| TGCATTATTTAGAGGATTGA+AGG | + | chr4.2:12789597-12789616 | MS.gene08779:CDS | 30.0% | |
| ! | AATATATGATGGAATCCTAG+TGG | - | chr4.2:12788913-12788932 | None:intergenic | 30.0% |
| ! | ACTTGAAATTCTTCTAGAAG+AGG | - | chr4.2:12786848-12786867 | None:intergenic | 30.0% |
| ! | ATATATGATGGAATCCTAGT+GGG | - | chr4.2:12788912-12788931 | None:intergenic | 30.0% |
| ! | CAAACAACTTTGAAAAGAGT+AGG | - | chr4.2:12787345-12787364 | None:intergenic | 30.0% |
| ! | CTTGTGATTAATTTTGAACC+TGG | - | chr4.2:12789559-12789578 | None:intergenic | 30.0% |
| ! | GAAGACAGATGTTGATTAAA+GGG | - | chr4.2:12788363-12788382 | None:intergenic | 30.0% |
| ! | GCTTCTTGGAGTAAATATTT+TGG | + | chr4.2:12787770-12787789 | MS.gene08779:intron | 30.0% |
| !! | AGGAAGCTTTTTAAGCAATT+TGG | + | chr4.2:12787133-12787152 | MS.gene08779:intron | 30.0% |
| !! | GGAAGCTTTTTAAGCAATTT+GGG | + | chr4.2:12787134-12787153 | MS.gene08779:intron | 30.0% |
| !! | GTTAAAAGAAGCGTTACATT+TGG | + | chr4.2:12788528-12788547 | MS.gene08779:intron | 30.0% |
| !!! | TTGGAGGTATTTTTATTGGA+AGG | + | chr4.2:12787113-12787132 | MS.gene08779:intron | 30.0% |
| AAATGACATTGATATGCCTC+TGG | - | chr4.2:12788887-12788906 | None:intergenic | 35.0% | |
| ATACTCTTCTTCTTCCTCTA+AGG | + | chr4.2:12789080-12789099 | MS.gene08779:intron | 35.0% | |
| ATCTTTATTCAGGGTCAAGT+TGG | + | chr4.2:12788025-12788044 | MS.gene08779:CDS | 35.0% | |
| ATGAATTATCGACACAAGCA+CGG | - | chr4.2:12787871-12787890 | None:intergenic | 35.0% | |
| ATGTAAAGTTTCTGTGGTGT+TGG | + | chr4.2:12789747-12789766 | MS.gene08779:CDS | 35.0% | |
| ATTCATCAACAGAACCTCTT+TGG | - | chr4.2:12788202-12788221 | None:intergenic | 35.0% | |
| ATTTGAGCCATATAAGTTGC+TGG | - | chr4.2:12788054-12788073 | None:intergenic | 35.0% | |
| ATTTGGATTTATCCTCCTCA+AGG | - | chr4.2:12788007-12788026 | None:intergenic | 35.0% | |
| CAAACATGTACTCAGTACTT+TGG | + | chr4.2:12787642-12787661 | MS.gene08779:intron | 35.0% | |
| CACTGGTATTCTCTTCAATA+TGG | - | chr4.2:12788132-12788151 | None:intergenic | 35.0% | |
| CTTGACCCTGAATAAAGATT+TGG | - | chr4.2:12788024-12788043 | None:intergenic | 35.0% | |
| GCATTTAAGCCTATAACACT+TGG | + | chr4.2:12789772-12789791 | MS.gene08779:CDS | 35.0% | |
| GGAACTGATGCATTATTTAG+AGG | + | chr4.2:12789589-12789608 | MS.gene08779:CDS | 35.0% | |
| GTCGATAATTCATAGCTAAC+TGG | + | chr4.2:12787878-12787897 | MS.gene08779:intron | 35.0% | |
| GTTAGGTCTTAATTCCAACA+TGG | - | chr4.2:12789257-12789276 | None:intergenic | 35.0% | |
| TACTGAGTACATGTTTGGAT+TGG | - | chr4.2:12787639-12787658 | None:intergenic | 35.0% | |
| TATGTAATCAGTCTCATGTC+TGG | + | chr4.2:12787842-12787861 | MS.gene08779:intron | 35.0% | |
| TCCAAAAATTGCAAGACTTG+AGG | + | chr4.2:12788235-12788254 | MS.gene08779:CDS | 35.0% | |
| TCTTGCATGTAAAGTTTCTG+TGG | + | chr4.2:12789741-12789760 | MS.gene08779:CDS | 35.0% | |
| TTAATCACAAGCAACAAAGG+AGG | + | chr4.2:12789568-12789587 | MS.gene08779:CDS | 35.0% | |
| TTAATCAGTTCCATGCTTCT+TGG | + | chr4.2:12787756-12787775 | MS.gene08779:intron | 35.0% | |
| TTGGGACAGCTAATATATGA+TGG | - | chr4.2:12788924-12788943 | None:intergenic | 35.0% | |
| TTGGTTACCAGCAACTTATA+TGG | + | chr4.2:12788044-12788063 | MS.gene08779:CDS | 35.0% | |
| TTGTCAAATCATGGCTGATT+TGG | + | chr4.2:12787174-12787193 | MS.gene08779:intron | 35.0% | |
| TTGTCACTGCATCAAACATA+AGG | + | chr4.2:12788998-12789017 | MS.gene08779:intron | 35.0% | |
| TTGTGAATGAGTGAAGTTGA+AGG | - | chr4.2:12786790-12786809 | None:intergenic | 35.0% | |
| TTTGGATTTATCCTCCTCAA+GGG | - | chr4.2:12788006-12788025 | None:intergenic | 35.0% | |
| TTTGGGAGTAATTTACAAGC+TGG | + | chr4.2:12787151-12787170 | MS.gene08779:intron | 35.0% | |
| TTTGTAGTGAAGTATAGCTC+AGG | + | chr4.2:12789661-12789680 | MS.gene08779:CDS | 35.0% | |
| ! | GAAGGAATCATAGTTTTCAC+AGG | - | chr4.2:12786772-12786791 | None:intergenic | 35.0% |
| ! | GGAAGACAGATGTTGATTAA+AGG | - | chr4.2:12788364-12788383 | None:intergenic | 35.0% |
| ! | GGTATAACTCTGAAAATCTG+TGG | - | chr4.2:12787910-12787929 | None:intergenic | 35.0% |
| ! | TATATGATGGAATCCTAGTG+GGG | - | chr4.2:12788911-12788930 | None:intergenic | 35.0% |
| !! | CAAAGTACTGAGTACATGTT+TGG | - | chr4.2:12787644-12787663 | None:intergenic | 35.0% |
| !! | GATGCTGTGCTGATATTTTT+CGG | + | chr4.2:12789421-12789440 | MS.gene08779:CDS | 35.0% |
| !! | TAAGTGTGGCATTGACTTTA+GGG | + | chr4.2:12789629-12789648 | MS.gene08779:CDS | 35.0% |
| !! | TATTAGCATGGTCTTGTAGA+TGG | + | chr4.2:12787728-12787747 | MS.gene08779:intron | 35.0% |
| AACTTCTGCCCAAGTGTTAT+AGG | - | chr4.2:12789784-12789803 | None:intergenic | 40.0% | |
| ACAAGCTGGTTGTCAAATCA+TGG | + | chr4.2:12787165-12787184 | MS.gene08779:intron | 40.0% | |
| ACCGATCATTCTACAGAATC+AGG | + | chr4.2:12788161-12788180 | MS.gene08779:CDS | 40.0% | |
| AGGAACTGATCTATCCATGT+TGG | + | chr4.2:12789240-12789259 | MS.gene08779:CDS | 40.0% | |
| AGTTGGAACACCTGAAATCA+TGG | + | chr4.2:12788658-12788677 | MS.gene08779:intron | 40.0% | |
| CATCTACGTCTATCAAGCAT+AGG | - | chr4.2:12788103-12788122 | None:intergenic | 40.0% | |
| CATCTCAAAGGAAGAAAGCA+TGG | + | chr4.2:12789360-12789379 | MS.gene08779:CDS | 40.0% | |
| CATGCTAATATAAACCGGCT+AGG | - | chr4.2:12787718-12787737 | None:intergenic | 40.0% | |
| CCAATACGACTTTCGAATTG+AGG | + | chr4.2:12789201-12789220 | MS.gene08779:CDS | 40.0% | |
| CCCTGATTCTGTAGAATGAT+CGG | - | chr4.2:12788165-12788184 | None:intergenic | 40.0% | |
| CCGATCATTCTACAGAATCA+GGG | + | chr4.2:12788162-12788181 | MS.gene08779:CDS | 40.0% | |
| CCTCAATTCGAAAGTCGTAT+TGG | - | chr4.2:12789204-12789223 | None:intergenic | 40.0% | |
| CGATCATTCTACAGAATCAG+GGG | + | chr4.2:12788163-12788182 | MS.gene08779:CDS | 40.0% | |
| CTATGCTTGATAGACGTAGA+TGG | + | chr4.2:12788101-12788120 | MS.gene08779:CDS | 40.0% | |
| GTCAATGCCACACTTACTAT+AGG | - | chr4.2:12789625-12789644 | None:intergenic | 40.0% | |
| GTTAGTGGTGAAGACAAGAA+CGG | - | chr4.2:12788739-12788758 | None:intergenic | 40.0% | |
| TACTTTATCTTCCCTTGAGG+AGG | + | chr4.2:12787992-12788011 | MS.gene08779:CDS | 40.0% | |
| TGCAAGACTTGAGGCTATTT+GGG | + | chr4.2:12788244-12788263 | MS.gene08779:CDS | 40.0% | |
| TGGAATGTGATCCAAATGTC+AGG | - | chr4.2:12788421-12788440 | None:intergenic | 40.0% | |
| TGTATCTGCTATTGTTGCAG+AGG | + | chr4.2:12789518-12789537 | MS.gene08779:CDS | 40.0% | |
| TTGCAAGACTTGAGGCTATT+TGG | + | chr4.2:12788243-12788262 | MS.gene08779:CDS | 40.0% | |
| ! | ATATGATGGAATCCTAGTGG+GGG | - | chr4.2:12788910-12788929 | None:intergenic | 40.0% |
| ! | CTAGCCGGTTTATATTAGCA+TGG | + | chr4.2:12787716-12787735 | MS.gene08779:intron | 40.0% |
| ! | GCCTCAAGTCTTGCAATTTT+TGG | - | chr4.2:12788239-12788258 | None:intergenic | 40.0% |
| ! | GGTTGGTTAAGCTCATTTGA+TGG | + | chr4.2:12788701-12788720 | MS.gene08779:intron | 40.0% |
| ! | TTGAAAAGATAACGGTGCCA+CGG | + | chr4.2:12787593-12787612 | MS.gene08779:intron | 40.0% |
| !! | CTTTCTTCCTTTGAGATGAC+AGG | - | chr4.2:12789358-12789377 | None:intergenic | 40.0% |
| !! | GTAAGTGTGGCATTGACTTT+AGG | + | chr4.2:12789628-12789647 | MS.gene08779:CDS | 40.0% |
| !! | GTTTGGATTGGCAATGTGTT+TGG | - | chr4.2:12787627-12787646 | None:intergenic | 40.0% |
| AACCTTGTGACTCAGCTTGA+AGG | + | chr4.2:12789274-12789293 | MS.gene08779:CDS | 45.0% | |
| ACACTTGGGCAGAAGTTACT+TGG | + | chr4.2:12789787-12789806 | MS.gene08779:CDS | 45.0% | |
| ACCAACAAAGAAAGCGAACC+CGG | - | chr4.2:12789482-12789501 | None:intergenic | 45.0% | |
| ACCATCATTGCCAGAAGAAG+AGG | + | chr4.2:12789159-12789178 | MS.gene08779:CDS | 45.0% | |
| ACCTCTTCTTCTGGCAATGA+TGG | - | chr4.2:12789163-12789182 | None:intergenic | 45.0% | |
| ACCTTGTGACTCAGCTTGAA+GGG | + | chr4.2:12789275-12789294 | MS.gene08779:CDS | 45.0% | |
| AGACTTGAGGCTATTTGGGT+CGG | + | chr4.2:12788248-12788267 | MS.gene08779:CDS | 45.0% | |
| CCAAACTCCTGTCATCTCAA+AGG | + | chr4.2:12789348-12789367 | MS.gene08779:CDS | 45.0% | |
| CGAATTGAGGATGCATTGCT+TGG | + | chr4.2:12789214-12789233 | MS.gene08779:CDS | 45.0% | |
| CTCAAAAGCTTGAACCTAGC+CGG | + | chr4.2:12787701-12787720 | MS.gene08779:intron | 45.0% | |
| CTCTCAGCTGGTGAAAATAC+CGG | + | chr4.2:12789460-12789479 | MS.gene08779:CDS | 45.0% | |
| GAAGGGTCCTATAGTAAGTG+TGG | + | chr4.2:12789615-12789634 | MS.gene08779:CDS | 45.0% | |
| GGTTCGCTTTCTTTGTTGGT+GGG | + | chr4.2:12789482-12789501 | MS.gene08779:CDS | 45.0% | |
| TATGGTGGTACCTCTTCTTC+TGG | - | chr4.2:12789172-12789191 | None:intergenic | 45.0% | |
| TCAAGCTGAGTCACAAGGTT+AGG | - | chr4.2:12789274-12789293 | None:intergenic | 45.0% | |
| TCGAAAGTCGTATTGGAAGC+CGG | - | chr4.2:12789197-12789216 | None:intergenic | 45.0% | |
| TCTCAGCTGGTGAAAATACC+GGG | + | chr4.2:12789461-12789480 | MS.gene08779:CDS | 45.0% | |
| TGACATTGATATGCCTCTGG+TGG | - | chr4.2:12788884-12788903 | None:intergenic | 45.0% | |
| TGATCGGTCATCAAACTCAC+TGG | - | chr4.2:12788149-12788168 | None:intergenic | 45.0% | |
| TGGCAAAACAACTGATGGTC+TGG | - | chr4.2:12787931-12787950 | None:intergenic | 45.0% | |
| TGTGCATACTTTCACGTCAG+AGG | - | chr4.2:12787955-12787974 | None:intergenic | 45.0% | |
| TTATTGTCAGGCCTAGCAAG+TGG | + | chr4.2:12787371-12787390 | MS.gene08779:intron | 45.0% | |
| ! | CTCAAAGGAAGAAAGCATGG+AGG | + | chr4.2:12789363-12789382 | MS.gene08779:CDS | 45.0% |
| ! | GCTATTGTTGCAGAGGTATG+TGG | + | chr4.2:12789525-12789544 | MS.gene08779:CDS | 45.0% |
| ! | GCTTTCTTTGTTGGTGGGAT+TGG | + | chr4.2:12789487-12789506 | MS.gene08779:CDS | 45.0% |
| ! | GGTATTTTCACCAGCTGAGA+GGG | - | chr4.2:12789461-12789480 | None:intergenic | 45.0% |
| ! | TCAATGTCATTTCCCCCACT+AGG | + | chr4.2:12788895-12788914 | MS.gene08779:intron | 45.0% |
| ! | TTCTTTGTTGGTGGGATTGG+AGG | + | chr4.2:12789490-12789509 | MS.gene08779:CDS | 45.0% |
| ! | TTGTTGCAGAGGTATGTGGA+CGG | + | chr4.2:12789529-12789548 | MS.gene08779:CDS | 45.0% |
| !! | ATTTGGGTCGGTGTTGATTC+AGG | + | chr4.2:12788260-12788279 | MS.gene08779:CDS | 45.0% |
| !! | CCTTTGAGATGACAGGAGTT+TGG | - | chr4.2:12789351-12789370 | None:intergenic | 45.0% |
| !! | CTTCTTCTTCCTCTAAGGTC+AGG | + | chr4.2:12789085-12789104 | MS.gene08779:intron | 45.0% |
| !! | TGAAAAGATAACGGTGCCAC+GGG | + | chr4.2:12787594-12787613 | MS.gene08779:intron | 45.0% |
| !! | TTCCTCTAAGGTCAGGTCAA+TGG | + | chr4.2:12789092-12789111 | MS.gene08779:intron | 45.0% |
| !! | AAAATATAAATAATATATGT+TGG | - | chr4.2:12788943-12788962 | None:intergenic | 5.0% |
| !! | AAATATAAATAATATATGTT+GGG | - | chr4.2:12788942-12788961 | None:intergenic | 5.0% |
| ACCGGGTTCGCTTTCTTTGT+TGG | + | chr4.2:12789478-12789497 | MS.gene08779:CDS | 50.0% | |
| AGGTCAGGTCAATGGAGACT+AGG | + | chr4.2:12789100-12789119 | MS.gene08779:intron | 50.0% | |
| CATACTTTCACGTCAGAGGC+TGG | - | chr4.2:12787951-12787970 | None:intergenic | 50.0% | |
| CTCCATTGACCTGACCTTAG+AGG | - | chr4.2:12789097-12789116 | None:intergenic | 50.0% | |
| GAGGCTGGCAAAACAACTGA+TGG | - | chr4.2:12787936-12787955 | None:intergenic | 50.0% | |
| GCATTGTGCAATTCCACCAG+AGG | + | chr4.2:12788868-12788887 | MS.gene08779:intron | 50.0% | |
| GGGTTCGCTTTCTTTGTTGG+TGG | + | chr4.2:12789481-12789500 | MS.gene08779:CDS | 50.0% | |
| TATTGGAAGCCGGTGTATGG+TGG | - | chr4.2:12789187-12789206 | None:intergenic | 50.0% | |
| TCAATTGCTTCCCTCTCAGC+TGG | + | chr4.2:12789448-12789467 | MS.gene08779:CDS | 50.0% | |
| TCCCTTCAAGCTGAGTCACA+AGG | - | chr4.2:12789279-12789298 | None:intergenic | 50.0% | |
| TCGTATTGGAAGCCGGTGTA+TGG | - | chr4.2:12789190-12789209 | None:intergenic | 50.0% | |
| TGTGACTCAGCTTGAAGGGA+CGG | + | chr4.2:12789279-12789298 | MS.gene08779:CDS | 50.0% | |
| ! | CGGTATTTTCACCAGCTGAG+AGG | - | chr4.2:12789462-12789481 | None:intergenic | 50.0% |
| ! | GAGGATGCATTGCTTGGTGA+AGG | + | chr4.2:12789220-12789239 | MS.gene08779:CDS | 50.0% |
| !! | GAAAAGATAACGGTGCCACG+GGG | + | chr4.2:12787595-12787614 | MS.gene08779:intron | 50.0% |
| !! | GAAGAGGTACCACCATACAC+CGG | + | chr4.2:12789175-12789194 | MS.gene08779:CDS | 50.0% |
| TGTGTTTGGCGAAATCCCCG+TGG | - | chr4.2:12787613-12787632 | None:intergenic | 55.0% | |
| !! | AGGTATGTGGACGGATTGCC+AGG | + | chr4.2:12789538-12789557 | MS.gene08779:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12786757 | 12789819 | 12786757 | ID=MS.gene08779 |
| chr4.2 | mRNA | 12786757 | 12789819 | 12786757 | ID=MS.gene08779.t1;Parent=MS.gene08779 |
| chr4.2 | exon | 12786757 | 12786922 | 12786757 | ID=MS.gene08779.t1.exon1;Parent=MS.gene08779.t1 |
| chr4.2 | CDS | 12786757 | 12786922 | 12786757 | ID=cds.MS.gene08779.t1;Parent=MS.gene08779.t1 |
| chr4.2 | exon | 12787913 | 12788281 | 12787913 | ID=MS.gene08779.t1.exon2;Parent=MS.gene08779.t1 |
| chr4.2 | CDS | 12787913 | 12788281 | 12787913 | ID=cds.MS.gene08779.t1;Parent=MS.gene08779.t1 |
| chr4.2 | exon | 12789107 | 12789819 | 12789107 | ID=MS.gene08779.t1.exon3;Parent=MS.gene08779.t1 |
| chr4.2 | CDS | 12789107 | 12789819 | 12789107 | ID=cds.MS.gene08779.t1;Parent=MS.gene08779.t1 |
| Gene Sequence |
| Protein sequence |
