AlfalfaGEDB | MS.gene09310

M. sativa cultivar XinJiangDaYe / MS.gene09310

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09310.t1	AET04181.1	95.6	365	16	0	51	415	124	488	2.10E-194	688.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09310.t1	G7LHY7	95.6	365	16	0	51	415	124	488	1.5e-194	688.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene09310	0.832676	8.25E-56	-1.69E-46
MS.gene049150	MS.gene09310	0.865821	4.47E-65	-1.69E-46
MS.gene049151	MS.gene09310	0.840553	8.12E-58	-1.69E-46
MS.gene049153	MS.gene09310	0.864318	1.33E-64	-1.69E-46
MS.gene049170	MS.gene09310	0.828391	9.23E-55	-1.69E-46
MS.gene049230	MS.gene09310	0.836258	1.04E-56	-1.69E-46
MS.gene049260	MS.gene09310	0.802689	4.98E-49	-1.69E-46
MS.gene049378	MS.gene09310	0.853413	2.43E-61	-1.69E-46
MS.gene049758	MS.gene09310	0.823677	1.22E-53	-1.69E-46
MS.gene049910	MS.gene09310	0.801473	8.86E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09310.t1	MTR_8g085620	93.990	416	24	1	1	415	73	488	0.0	769

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09310.t1	AT1G55280	47.355	397	180	10	20	408	14	389	9.89e-108	323
MS.gene09310.t1	AT1G55280	47.355	397	180	10	20	408	59	434	2.91e-107	323

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Find 93 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGTATCAGAGAATT+TGG	0.170887	4.1:-14084008	None:intergenic
AAATACTTTATCTTCCCTTG+AGG	0.599620	4.1:+14085102	MS.gene09310:CDS
AAATTAATCACAAGCAACAA+AGG	0.606917	4.1:+14086678	MS.gene09310:CDS
AACCTTGTGACTCAGCTTGA+AGG	0.472386	4.1:+14086387	MS.gene09310:CDS
AACTTCTGCCCAAGTGTTAT+AGG	0.288096	4.1:-14086894	None:intergenic
AATATAAGTGACTTCAATGC+TGG	0.469726	4.1:+14085184	MS.gene09310:CDS
ACACCAAAAGATATCATAGT+TGG	0.465828	4.1:+14086819	MS.gene09310:CDS
ACACTTGGGCAGAAGTTACC+TGG	0.542605	4.1:+14086900	MS.gene09310:CDS
ACCAACAAAGAAAGCGAACC+CGG	0.525652	4.1:-14086592	None:intergenic
ACCATCATTGCCAGAAGAAG+AGG	0.565997	4.1:+14086272	MS.gene09310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACTTTATCTTCCCTTG+AGG	+	chr4.1:14085102-14085121	MS.gene09310:CDS	30.0%
AACGAAGAAATTAAGAAGTG+GGG	-	chr4.1:14084042-14084061	None:intergenic	30.0%
AAGACCATGCTAATATAAAC+CGG	-	chr4.1:14084835-14084854	None:intergenic	30.0%
AATATAAGTGACTTCAATGC+TGG	+	chr4.1:14085184-14085203	MS.gene09310:CDS	30.0%
AATATTTACTCCAAGAAGCA+TGG	-	chr4.1:14084882-14084901	None:intergenic	30.0%
ACACCAAAAGATATCATAGT+TGG	+	chr4.1:14086819-14086838	MS.gene09310:CDS	30.0%
ACAGCACTTCAAAAAATTTG+AGG	-	chr4.1:14085499-14085518	None:intergenic	30.0%
AGATATCATAGTTGGAATGA+TGG	+	chr4.1:14086827-14086846	MS.gene09310:CDS	30.0%
ATATAGGCAAACATCAAATC+AGG	-	chr4.1:14084325-14084344	None:intergenic	30.0%
CAGCACTTCAAAAAATTTGA+GGG	-	chr4.1:14085498-14085517	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	14083869	14086932	14083869	ID=MS.gene09310
chr4.1	mRNA	14083869	14086932	14083869	ID=MS.gene09310.t1;Parent=MS.gene09310
chr4.1	exon	14083869	14084034	14083869	ID=MS.gene09310.t1.exon1;Parent=MS.gene09310.t1
chr4.1	CDS	14083869	14084034	14083869	ID=cds.MS.gene09310.t1;Parent=MS.gene09310.t1
chr4.1	exon	14085026	14085394	14085026	ID=MS.gene09310.t1.exon2;Parent=MS.gene09310.t1
chr4.1	CDS	14085026	14085394	14085026	ID=cds.MS.gene09310.t1;Parent=MS.gene09310.t1
chr4.1	exon	14086220	14086932	14086220	ID=MS.gene09310.t1.exon3;Parent=MS.gene09310.t1
chr4.1	CDS	14086220	14086932	14086220	ID=cds.MS.gene09310.t1;Parent=MS.gene09310.t1

Gene Sequence

>MS.gene09310

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCATTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGGTAACCCCACTTCTTAATTTCTTCGTTAAACTATTAAAAATCTTAACTTTTAAGGTTTAGTTTCACTTAAATGGATTTTAACTGTTCTCTTTATTTTGGGATTCATTTTAATATATGAATTTATTGTGATATTATATTAATTGAAGAGAAAAAATAAAATAAAATTAAATTAAATATATGATTCAAAATTTTGGAGGTATTTTTATTGGAAGGAAGCTTTTTAAGCAATTTGGGAGTAATTTACAAGCTGGTTGTCAAATCATGGCTGATTTGGTTTAACACTTTATCCTGATTTGATGTTTGCCTATATATGGCATATATGATGATTATGAAACTTAAATTATCATAACTATATGAATTATGTCATTTGATTTTGTTAAAGTATTGGTCATCCTCACATATTTTAATTTTGAAAGAAACCTACTCTTTTCAAAGTTGTTTGTAGTTATTATTGTCAGGCCTAGCAAGTGGTATATTAAATATTTCAGTGTGGTGAGTACTTAATGATTATAGTTGGTTAGTTTTGGCTGTCAAAGTTGTTGTTTGTGTCATCTGATTTGTGTATCTGCAACTTAGTTTATGTAAAAGTACAAAATTTATACTTGCTTTGTCTAGTGACTTTGACAGAATCACAGTAGACTACCGTGTTACAAAAGTTACAATTTAGAGTTTGAAAAGATAACGGTGCCACGGGGATTTCGCCAAACACATTGCCAATCCAAACATGTACTCAGTACTTTGGAAGAATACTTCTTTTTGTTTGCTTTAAAGTTATGCACTCAAAAGCTTGAACCTAGCCGGTTTATATTAGCATGGTCTTGGTAGATGGCAGAATTAATCAGTTCCATGCTTCTTGGAGTAAATATTTTGGACCAAATAAAGTACTTTTATTTTTTAATTTCACCAAAAGTCATTTGTTATATGTAATCAGTCTCATGTCTGGTGTCCGTGCTTGTGTCGATAATTCATAGCTAACTGGTTTGTGCCACAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTGAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAATGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTAAGTTATTCTAGTATATATTTTTTTTGGAGTAATTAAGATTCAGTAGACATCATCCTTAACCTTCAATTTTGAAGTCCCTTTAATCAACATCTGTCTTCCCTCAAATTTTTTGAAGTGCTGTGAAATTGTATTTCCTGACATTTGGATCACATTCCAGTTTTTAAACAGAAATGGTATTTGAGTATCAACTTGAGACAACTAAATTCGACAACTTTCTAAATTGTTAACAGGGTTCGCACAAATGTTAAAAGAAGCGTTACATTTGGTTAATAGATATATCAGGTGTTGCAACTAAAAACTTATCTACTAAACTTCACTAACCACAAATTTAAACGTGATTAACCTTGATTTTCAAGTGTTCAAATCTACATATAGTTGGAACACCTGAAATCATGGTTAATAATATTCGAATTCATGGTTGGTTAAGCTCATTTGATGGTTAATAAGTTTTCCGATCTTGTCTTCACCACTAACTACTTATTGAACTACATTAAGCATGTATGTGAATTGCATTAATAATTTAAATAGTTGTCGAATTTTGTTGTCCCAAATTGATGTTCAAACAATATTTTTGGTTTTAAAAGCATTGTGCAATTCCACCAGAGGCATATCAATGTCATTTCCCCCACTAGGATTCCATCATATATTAGCTGTCCCAACATATATTATTTATATTTTAAGAGTATTACCTCCAAAACTTTAAATTTCTATATTTGTCACTGCATCAAACATAAGGTCTTGATGAAGCTTGAAAAATTAATGTTGGTTTGATCAATCGAGTTTATCTATTTAACAATACTCTTCTTCTTCCTCTAAGGTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTTGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTATTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGACTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>MS.gene09310.t1

METIPVKTMIPSTSFIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLEEDKSKSLFRVKLVTSNLYGSNISDFNAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALTLGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM