AlfalfaGEDB | MS.gene34190

M. sativa cultivar XinJiangDaYe / MS.gene34190

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34190.t1	XP_013450807.1	98.9	92	1	0	1	92	208	299	7.20E-42	179.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34190.t1	Q9M3C6	57.1	91	38	1	1	91	185	274	1.3e-20	100.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34190.t1	A0A072U5C5	98.9	92	1	0	1	92	208	299	5.2e-42	179.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene34190	0.800239	1.58E-48	-1.69E-46
MS.gene049150	MS.gene34190	0.814059	1.87E-51	-1.69E-46
MS.gene049153	MS.gene34190	0.818095	2.34E-52	-1.69E-46
MS.gene049170	MS.gene34190	0.840642	7.69E-58	-1.69E-46
MS.gene049284	MS.gene34190	0.800132	1.66E-48	-1.69E-46
MS.gene049346	MS.gene34190	0.802056	6.72E-49	-1.69E-46
MS.gene049661	MS.gene34190	0.800123	1.67E-48	-1.69E-46
MS.gene049662	MS.gene34190	0.808807	2.58E-50	-1.69E-46
MS.gene049758	MS.gene34190	0.841922	3.54E-58	-1.69E-46
MS.gene049910	MS.gene34190	0.823781	1.15E-53	-1.69E-46
MS.gene050060	MS.gene34190	0.830605	2.67E-55	-1.69E-46
MS.gene050301	MS.gene34190	0.850428	1.71E-60	-1.69E-46
MS.gene050397	MS.gene34190	0.824727	6.90E-54	-1.69E-46
MS.gene050400	MS.gene34190	0.805409	1.35E-49	-1.69E-46
MS.gene050404	MS.gene34190	0.831597	1.53E-55	-1.69E-46
MS.gene050406	MS.gene34190	0.850338	1.81E-60	-1.69E-46
MS.gene050426	MS.gene34190	-0.875439	3.08E-68	-1.69E-46
MS.gene050464	MS.gene34190	0.848958	4.40E-60	-1.69E-46
MS.gene050529	MS.gene34190	0.861455	1.01E-63	-1.69E-46
MS.gene050642	MS.gene34190	0.840657	7.62E-58	-1.69E-46
MS.gene050670	MS.gene34190	0.873796	1.11E-67	-1.69E-46
MS.gene050812	MS.gene34190	0.822596	2.18E-53	-1.69E-46
MS.gene05105	MS.gene34190	0.814723	1.33E-51	-1.69E-46
MS.gene051471	MS.gene34190	0.805603	1.23E-49	-1.69E-46
MS.gene051525	MS.gene34190	0.823158	1.61E-53	-1.69E-46
MS.gene051582	MS.gene34190	0.862764	4.02E-64	-1.69E-46
MS.gene051860	MS.gene34190	0.807753	4.33E-50	-1.69E-46
MS.gene051983	MS.gene34190	0.85102	1.16E-60	-1.69E-46
MS.gene052011	MS.gene34190	-0.847363	1.21E-59	-1.69E-46
MS.gene052077	MS.gene34190	0.875994	1.99E-68	-1.69E-46
MS.gene052078	MS.gene34190	0.819951	8.87E-53	-1.69E-46
MS.gene052134	MS.gene34190	0.84437	7.89E-59	-1.69E-46
MS.gene052135	MS.gene34190	0.85326	2.69E-61	-1.69E-46
MS.gene052136	MS.gene34190	0.814062	1.87E-51	-1.69E-46
MS.gene052178	MS.gene34190	0.801699	7.96E-49	-1.69E-46
MS.gene052188	MS.gene34190	0.89187	2.68E-74	-1.69E-46
MS.gene052253	MS.gene34190	0.863383	2.59E-64	-1.69E-46
MS.gene052310	MS.gene34190	0.86881	4.95E-66	-1.69E-46
MS.gene052322	MS.gene34190	0.810235	1.28E-50	-1.69E-46
MS.gene052340	MS.gene34190	0.897217	1.74E-76	-1.69E-46
MS.gene052414	MS.gene34190	0.807638	4.58E-50	-1.69E-46
MS.gene052469	MS.gene34190	0.839264	1.76E-57	-1.69E-46
MS.gene052481	MS.gene34190	0.809344	1.98E-50	-1.69E-46
MS.gene052485	MS.gene34190	0.81074	9.92E-51	-1.69E-46
MS.gene052754	MS.gene34190	0.806107	9.66E-50	-1.69E-46
MS.gene052758	MS.gene34190	0.845991	2.87E-59	-1.69E-46
MS.gene05316	MS.gene34190	0.805811	1.11E-49	-1.69E-46
MS.gene053209	MS.gene34190	0.82247	2.33E-53	-1.69E-46
MS.gene053330	MS.gene34190	0.853055	3.08E-61	-1.69E-46
MS.gene053557	MS.gene34190	0.856956	2.26E-62	-1.69E-46
MS.gene053836	MS.gene34190	0.840019	1.12E-57	-1.69E-46
MS.gene053907	MS.gene34190	0.817775	2.77E-52	-1.69E-46
MS.gene053928	MS.gene34190	0.828527	8.56E-55	-1.69E-46
MS.gene054102	MS.gene34190	0.805546	1.27E-49	-1.69E-46
MS.gene054123	MS.gene34190	0.831409	1.70E-55	-1.69E-46
MS.gene054183	MS.gene34190	0.833044	6.69E-56	-1.69E-46
MS.gene054349	MS.gene34190	0.854515	1.17E-61	-1.69E-46
MS.gene054918	MS.gene34190	0.809146	2.19E-50	-1.69E-46
MS.gene054930	MS.gene34190	0.830093	3.57E-55	-1.69E-46
MS.gene054983	MS.gene34190	0.829264	5.67E-55	-1.69E-46
MS.gene055116	MS.gene34190	0.87541	3.15E-68	-1.69E-46
MS.gene055277	MS.gene34190	0.805502	1.29E-49	-1.69E-46
MS.gene055369	MS.gene34190	0.810232	1.28E-50	-1.69E-46
MS.gene055370	MS.gene34190	0.810824	9.51E-51	-1.69E-46
MS.gene055422	MS.gene34190	0.824279	8.80E-54	-1.69E-46
MS.gene055428	MS.gene34190	0.809059	2.28E-50	-1.69E-46
MS.gene055539	MS.gene34190	0.834159	3.52E-56	-1.69E-46
MS.gene05553	MS.gene34190	0.891862	2.70E-74	-1.69E-46
MS.gene05556	MS.gene34190	0.801587	8.39E-49	-1.69E-46
MS.gene055859	MS.gene34190	0.804111	2.53E-49	-1.69E-46
MS.gene056233	MS.gene34190	0.845365	4.25E-59	-1.69E-46
MS.gene056407	MS.gene34190	0.833733	4.50E-56	-1.69E-46
MS.gene056511	MS.gene34190	0.817569	3.08E-52	-1.69E-46
MS.gene056609	MS.gene34190	0.801011	1.10E-48	-1.69E-46
MS.gene056612	MS.gene34190	0.852797	3.65E-61	-1.69E-46
MS.gene056633	MS.gene34190	0.828181	1.04E-54	-1.69E-46
MS.gene056659	MS.gene34190	0.874776	5.18E-68	-1.69E-46
MS.gene056719	MS.gene34190	0.809417	1.91E-50	-1.69E-46
MS.gene056723	MS.gene34190	0.850078	2.14E-60	-1.69E-46
MS.gene056899	MS.gene34190	-0.844226	8.62E-59	-1.69E-46
MS.gene056979	MS.gene34190	0.840475	8.50E-58	-1.69E-46
MS.gene05702	MS.gene34190	0.861747	8.26E-64	-1.69E-46
MS.gene057121	MS.gene34190	0.806712	7.20E-50	-1.69E-46
MS.gene057124	MS.gene34190	0.872882	2.26E-67	-1.69E-46
MS.gene057396	MS.gene34190	0.886584	3.01E-72	-1.69E-46
MS.gene057448	MS.gene34190	0.838091	3.53E-57	-1.69E-46
MS.gene057449	MS.gene34190	0.834072	3.70E-56	-1.69E-46
MS.gene057450	MS.gene34190	0.840159	1.03E-57	-1.69E-46
MS.gene057749	MS.gene34190	0.809324	2.00E-50	-1.69E-46
MS.gene057823	MS.gene34190	0.803026	4.24E-49	-1.69E-46
MS.gene057825	MS.gene34190	0.80212	6.52E-49	-1.69E-46
MS.gene058002	MS.gene34190	0.868188	7.86E-66	-1.69E-46
MS.gene058007	MS.gene34190	0.822377	2.45E-53	-1.69E-46
MS.gene058082	MS.gene34190	0.837838	4.10E-57	-1.69E-46
MS.gene05811	MS.gene34190	0.835474	1.64E-56	-1.69E-46
MS.gene058142	MS.gene34190	0.878204	3.39E-69	-1.69E-46
MS.gene058233	MS.gene34190	0.83144	1.67E-55	-1.69E-46
MS.gene058276	MS.gene34190	0.872472	3.10E-67	-1.69E-46
MS.gene058365	MS.gene34190	0.839837	1.25E-57	-1.69E-46
MS.gene058371	MS.gene34190	0.802867	4.58E-49	-1.69E-46
MS.gene058660	MS.gene34190	0.80852	2.97E-50	-1.69E-46
MS.gene058700	MS.gene34190	0.817476	3.23E-52	-1.69E-46
MS.gene058710	MS.gene34190	0.834807	2.42E-56	-1.69E-46
MS.gene058746	MS.gene34190	0.826534	2.57E-54	-1.69E-46
MS.gene058845	MS.gene34190	0.806208	9.20E-50	-1.69E-46
MS.gene05886	MS.gene34190	0.829914	3.94E-55	-1.69E-46
MS.gene058928	MS.gene34190	0.840875	6.68E-58	-1.69E-46
MS.gene059011	MS.gene34190	0.859429	4.16E-63	-1.69E-46
MS.gene05907	MS.gene34190	0.835677	1.46E-56	-1.69E-46
MS.gene059141	MS.gene34190	0.820876	5.44E-53	-1.69E-46
MS.gene059247	MS.gene34190	0.820443	6.84E-53	-1.69E-46
MS.gene059285	MS.gene34190	0.865803	4.53E-65	-1.69E-46
MS.gene059420	MS.gene34190	0.850827	1.32E-60	-1.69E-46
MS.gene059597	MS.gene34190	0.827123	1.86E-54	-1.69E-46
MS.gene05959	MS.gene34190	0.807597	4.68E-50	-1.69E-46
MS.gene059676	MS.gene34190	0.81828	2.13E-52	-1.69E-46
MS.gene059688	MS.gene34190	0.855077	8.03E-62	-1.69E-46
MS.gene059692	MS.gene34190	0.851519	8.42E-61	-1.69E-46
MS.gene059695	MS.gene34190	0.84926	3.62E-60	-1.69E-46
MS.gene059788	MS.gene34190	0.822781	1.97E-53	-1.69E-46
MS.gene059807	MS.gene34190	0.810123	1.35E-50	-1.69E-46
MS.gene05984	MS.gene34190	0.851266	9.93E-61	-1.69E-46
MS.gene059894	MS.gene34190	0.866282	3.20E-65	-1.69E-46
MS.gene059899	MS.gene34190	0.837964	3.81E-57	-1.69E-46
MS.gene060083	MS.gene34190	0.801285	9.68E-49	-1.69E-46
MS.gene060247	MS.gene34190	0.841477	4.64E-58	-1.69E-46
MS.gene060403	MS.gene34190	0.846681	1.86E-59	-1.69E-46
MS.gene060407	MS.gene34190	0.858624	7.25E-63	-1.69E-46
MS.gene061049	MS.gene34190	0.875997	1.98E-68	-1.69E-46
MS.gene061051	MS.gene34190	-0.832719	8.05E-56	-1.69E-46
MS.gene061154	MS.gene34190	0.857068	2.10E-62	-1.69E-46
MS.gene061159	MS.gene34190	0.870314	1.60E-66	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34190.t1	MTR_6g007180	97.849	93	2	0	1	93	208	300	9.29e-62	189

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34190.t1	AT3G55250	56.044	91	39	1	1	91	185	274	8.19e-24	91.7

Find 15 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAATCTACGTTTGTTGCTT+CGG	0.330000	6.2:-2745777	MS.gene34190:CDS
AGAGATTCGGCGCATGGTTA+AGG	0.388940	6.2:-2745676	MS.gene34190:CDS
TCAACAGCTTCCTTTGATAG+AGG	0.406723	6.2:+2745597	None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG	0.411361	6.2:+2745747	None:intergenic
GATAGAGGCTTAGCAGCATC+TGG	0.416100	6.2:+2745612	None:intergenic
GAAAGTAGAAGACGGAGGTA+TGG	0.445392	6.2:-2745643	MS.gene34190:CDS
TTCTCAACTCGAACCTCCAT+TGG	0.453422	6.2:+2745810	None:intergenic
AAAACAAGAGATTCGGCGCA+TGG	0.513137	6.2:-2745682	MS.gene34190:CDS
CTACGTTTGTTGCTTCGGAA+AGG	0.538343	6.2:-2745772	MS.gene34190:CDS
TCGGCGCATGGTTAAGGAGA+TGG	0.565322	6.2:-2745670	MS.gene34190:CDS
TGCTGCTAAGCCTCTATCAA+AGG	0.573332	6.2:-2745607	MS.gene34190:CDS
AATGGAGGTTCGAGTTGAGA+AGG	0.577559	6.2:-2745808	MS.gene34190:CDS
CTATAGAGACAGAAGATGAG+AGG	0.617615	6.2:-2745746	MS.gene34190:CDS
ATGGCAGAGAAAGTAGAAGA+CGG	0.643691	6.2:-2745651	MS.gene34190:CDS
GCAGAGAAAGTAGAAGACGG+AGG	0.701413	6.2:-2745648	MS.gene34190:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTTTGTTTGAGAAAGTTA+AGG	+	chr6.2:2745799-2745818	None:intergenic	20.0%
	CAGTTCAAAAACAAGAGATT+CGG	-	chr6.2:2745666-2745685	MS.gene34190:CDS	30.0%
!!!	ATCTCTTGTTTTTGAACTGA+TGG	+	chr6.2:2745665-2745684	None:intergenic	30.0%
	ATGGCAGAGAAAGTAGAAGA+CGG	-	chr6.2:2745704-2745723	MS.gene34190:CDS	40.0%
	CTATAGAGACAGAAGATGAG+AGG	-	chr6.2:2745609-2745628	MS.gene34190:CDS	40.0%
	CTCTCATCTTCTGTCTCTAT+AGG	+	chr6.2:2745611-2745630	None:intergenic	40.0%
	TCAACAGCTTCCTTTGATAG+AGG	+	chr6.2:2745761-2745780	None:intergenic	40.0%
!	GCAATCTACGTTTGTTGCTT+CGG	-	chr6.2:2745578-2745597	MS.gene34190:CDS	40.0%
	AAAACAAGAGATTCGGCGCA+TGG	-	chr6.2:2745673-2745692	MS.gene34190:CDS	45.0%
	GAAAGTAGAAGACGGAGGTA+TGG	-	chr6.2:2745712-2745731	MS.gene34190:CDS	45.0%
	TGCTGCTAAGCCTCTATCAA+AGG	-	chr6.2:2745748-2745767	MS.gene34190:CDS	45.0%
!	CTACGTTTGTTGCTTCGGAA+AGG	-	chr6.2:2745583-2745602	MS.gene34190:CDS	45.0%
	AGAGATTCGGCGCATGGTTA+AGG	-	chr6.2:2745679-2745698	MS.gene34190:CDS	50.0%
	GATAGAGGCTTAGCAGCATC+TGG	+	chr6.2:2745746-2745765	None:intergenic	50.0%
	GCAGAGAAAGTAGAAGACGG+AGG	-	chr6.2:2745707-2745726	MS.gene34190:CDS	50.0%
	TCGGCGCATGGTTAAGGAGA+TGG	-	chr6.2:2745685-2745704	MS.gene34190:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	2745548	2745829	2745548	ID=MS.gene34190
chr6.2	mRNA	2745548	2745829	2745548	ID=MS.gene34190.t1;Parent=MS.gene34190
chr6.2	exon	2745548	2745829	2745548	ID=MS.gene34190.t1.exon1;Parent=MS.gene34190.t1
chr6.2	CDS	2745548	2745829	2745548	ID=cds.MS.gene34190.t1;Parent=MS.gene34190.t1

Gene Sequence	>MS.gene34190 ATGGAGGTTCGAGTTGAGAAGGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCAGTTCAAAAACAAGAGATTCGGCGCATGGTTAAGGAGATGGCAGAGAAAGTAGAAGACGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAACAATTAG
Protein sequence	>MS.gene34190.t1 MEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMAEKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNN