Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06655.t1 | XP_003602308.1 | 97 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 2.70E-122 | 448 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06655.t1 | Q94A65 | 79.3 | 174 | 36 | 0 | 54 | 227 | 44 | 217 | 7.3e-76 | 285.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06655.t1 | G7J862 | 97.0 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 2.0e-122 | 448.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene06655 | 0.819696 | 1.01E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene06655 | 0.836572 | 8.65E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene06655 | 0.800234 | 1.59E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene06655 | 0.839004 | 2.05E-57 | -1.69E-46 |
| MS.gene050479 | MS.gene06655 | -0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene050547 | MS.gene06655 | -0.81837 | 2.03E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene06655 | 0.802573 | 5.26E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene06655 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene06655 | 0.813153 | 2.96E-51 | -1.69E-46 |
| MS.gene050781 | MS.gene06655 | 0.803065 | 4.16E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene06655 | 0.847776 | 9.34E-60 | -1.69E-46 |
| MS.gene05105 | MS.gene06655 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene06655 | 0.826067 | 3.32E-54 | -1.69E-46 |
| MS.gene051242 | MS.gene06655 | 0.813506 | 2.47E-51 | -1.69E-46 |
| MS.gene051244 | MS.gene06655 | 0.848555 | 5.69E-60 | -1.69E-46 |
| MS.gene051525 | MS.gene06655 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene06655 | 0.81656 | 5.19E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene06655 | 0.824104 | 9.67E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene06655 | 0.801206 | 1.00E-48 | -1.69E-46 |
| MS.gene052322 | MS.gene06655 | 0.803808 | 2.92E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene06655 | 0.839419 | 1.60E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene06655 | 0.840515 | 8.30E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene06655 | 0.8219 | 3.16E-53 | -1.69E-46 |
| MS.gene052505 | MS.gene06655 | 0.838995 | 2.06E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene06655 | 0.835825 | 1.34E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene06655 | 0.814921 | 1.20E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene06655 | 0.817049 | 4.03E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene06655 | 0.833318 | 5.71E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene06655 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene053207 | MS.gene06655 | 0.844005 | 9.88E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene06655 | 0.813291 | 2.76E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene06655 | 0.806456 | 8.15E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene06655 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene054343 | MS.gene06655 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene06655 | 0.826598 | 2.48E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene06655 | -0.8227 | 2.06E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene06655 | 0.819914 | 9.04E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene06655 | 0.851166 | 1.06E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene06655 | 0.827141 | 1.84E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene06655 | 0.820705 | 5.96E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene06655 | 0.86456 | 1.11E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene06655 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene06655 | 0.801707 | 7.93E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene06655 | 0.812107 | 5.01E-51 | -1.69E-46 |
| MS.gene056351 | MS.gene06655 | 0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene056374 | MS.gene06655 | 0.814466 | 1.52E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene06655 | 0.832658 | 8.34E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene06655 | 0.832373 | 9.81E-56 | -1.69E-46 |
| MS.gene056877 | MS.gene06655 | 0.847416 | 1.17E-59 | -1.69E-46 |
| MS.gene057048 | MS.gene06655 | 0.83117 | 1.94E-55 | -1.69E-46 |
| MS.gene057196 | MS.gene06655 | 0.999159 | 2.82E-293 | -1.69E-46 |
| MS.gene057331 | MS.gene06655 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene06655 | 0.875497 | 2.94E-68 | -1.69E-46 |
| MS.gene057416 | MS.gene06655 | 0.823521 | 1.32E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene06655 | 0.868392 | 6.76E-66 | -1.69E-46 |
| MS.gene058019 | MS.gene06655 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene06655 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene06655 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene06655 | 0.83451 | 2.87E-56 | -1.69E-46 |
| MS.gene058444 | MS.gene06655 | 0.823291 | 1.50E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene06655 | 0.835953 | 1.24E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene06655 | 0.869711 | 2.52E-66 | -1.69E-46 |
| MS.gene058838 | MS.gene06655 | 0.856742 | 2.62E-62 | -1.69E-46 |
| MS.gene05883 | MS.gene06655 | 0.804233 | 2.38E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene06655 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene059023 | MS.gene06655 | 0.838052 | 3.62E-57 | -1.69E-46 |
| MS.gene05914 | MS.gene06655 | 0.81779 | 2.75E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene06655 | 0.846325 | 2.33E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene06655 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene06655 | 0.814902 | 1.22E-51 | -1.69E-46 |
| MS.gene059756 | MS.gene06655 | 0.822678 | 2.08E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene06655 | 0.806541 | 7.82E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene06655 | 0.809892 | 1.51E-50 | -1.69E-46 |
| MS.gene060469 | MS.gene06655 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene06655 | 0.802397 | 5.72E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene06655 | 0.846899 | 1.62E-59 | -1.69E-46 |
| MS.gene061150 | MS.gene06655 | 0.847013 | 1.51E-59 | -1.69E-46 |
| MS.gene061231 | MS.gene06655 | 0.813958 | 1.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06655.t1 | MTR_3g092040 | 96.983 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 1.23e-168 | 464 |
| MS.gene06655.t1 | MTR_3g092040 | 96.875 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 1.12e-111 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06655.t1 | AT4G27700 | 78.409 | 176 | 38 | 0 | 52 | 227 | 42 | 217 | 6.09e-102 | 295 |
Find 47 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTACTTGCTAGTCCTTAA+TGG | 0.218285 | 3.3:+76853304 | MS.gene06655:CDS |
| CAATTAACGTGCAAGTTTAC+AGG | 0.264259 | 3.3:+76852447 | MS.gene06655:CDS |
| TTGATCACGTGTACCTTCTA+AGG | 0.292255 | 3.3:-76851640 | None:intergenic |
| AGACGTTGTTGTACCCATTA+AGG | 0.314913 | 3.3:-76853318 | None:intergenic |
| ACCTCCTTGAACTCTGCTTC+TGG | 0.359245 | 3.3:-76852242 | None:intergenic |
| ACTTGCACGTTAATTGCATC+TGG | 0.366259 | 3.3:-76852440 | None:intergenic |
| CTTACTTGCTAGTCCTTAAT+GGG | 0.367095 | 3.3:+76853305 | MS.gene06655:CDS |
| CCACATCATATTTACAATCC+TGG | 0.388007 | 3.3:+76851610 | MS.gene06655:CDS |
| AAATGCAAATGCAGCACGTC+TGG | 0.405189 | 3.3:-76852501 | None:intergenic |
| TGTAAAGCCCACCTTCTAGA+TGG | 0.405275 | 3.3:-76853342 | None:intergenic |
| TGAAGGCGCAGAGCTTCCTT+TGG | 0.408083 | 3.3:-76852185 | None:intergenic |
| ATAATAGTAGCTTGCTCAGC+AGG | 0.410454 | 3.3:+76852687 | MS.gene06655:CDS |
| TCCTGGGTACCTTCCTTAGA+AGG | 0.423883 | 3.3:+76851627 | MS.gene06655:CDS |
| TTTACAGGCTTATAAAAGAA+TGG | 0.431650 | 3.3:+76852462 | MS.gene06655:CDS |
| TGCCACAAGGTCAACAATCT+AGG | 0.445952 | 3.3:+76852736 | MS.gene06655:CDS |
| AAGGCCAGAAGCAGAGTTCA+AGG | 0.467849 | 3.3:+76852238 | MS.gene06655:CDS |
| TAGAAGGTGGGCTTTACAAA+TGG | 0.471246 | 3.3:+76853347 | MS.gene06655:CDS |
| CAGATACCTGGTGACTTGGC+TGG | 0.485918 | 3.3:-76851762 | None:intergenic |
| AGGTAATAGCTGAAGAAGAA+TGG | 0.495632 | 3.3:+76851862 | MS.gene06655:intron |
| CACATCATATTTACAATCCT+GGG | 0.506172 | 3.3:+76851611 | MS.gene06655:CDS |
| CTTGCACGTTAATTGCATCT+GGG | 0.507566 | 3.3:-76852439 | None:intergenic |
| GTACACGTGATCAAAATTCA+TGG | 0.508681 | 3.3:+76851649 | MS.gene06655:CDS |
| CATCTTACACTTGATAAACT+CGG | 0.509099 | 3.3:-76852555 | None:intergenic |
| ATCTTACACTTGATAAACTC+GGG | 0.514723 | 3.3:-76852554 | None:intergenic |
| ACTCCTCTGCTACAGCTGGC+AGG | 0.515472 | 3.3:-76853381 | None:intergenic |
| AGCACGTCTGGCAATGTCCC+AGG | 0.517639 | 3.3:-76852489 | None:intergenic |
| GCTTTACAAATGGTTTAAAG+AGG | 0.544902 | 3.3:+76853357 | MS.gene06655:CDS |
| AACAACGTCTTCCATCTAGA+AGG | 0.547666 | 3.3:+76853331 | MS.gene06655:CDS |
| TTATAAAAGAATGGACAGCC+TGG | 0.552760 | 3.3:+76852471 | MS.gene06655:CDS |
| ATTCACTCCTCTGCTACAGC+TGG | 0.554886 | 3.3:-76853385 | None:intergenic |
| AGAACAGATACCTGGTGACT+TGG | 0.561851 | 3.3:-76851766 | None:intergenic |
| TTGCACGTTAATTGCATCTG+GGG | 0.578396 | 3.3:-76852438 | None:intergenic |
| GGACCTGCCAGCTGTAGCAG+AGG | 0.578953 | 3.3:+76853378 | MS.gene06655:CDS |
| ACAAAACCAGCCAAGTCACC+AGG | 0.585038 | 3.3:+76851756 | MS.gene06655:CDS |
| AACGTCTTCCATCTAGAAGG+TGG | 0.586598 | 3.3:+76853334 | MS.gene06655:CDS |
| TACCTAGATTGTTGACCTTG+TGG | 0.587500 | 3.3:-76852738 | None:intergenic |
| CACAACAGAACTTTGCAAGA+GGG | 0.596863 | 3.3:+76851712 | MS.gene06655:CDS |
| TCACAACAGAACTTTGCAAG+AGG | 0.603824 | 3.3:+76851711 | MS.gene06655:CDS |
| TATAAAAGAATGGACAGCCT+GGG | 0.617323 | 3.3:+76852472 | MS.gene06655:CDS |
| ACCTTCTAAGGAAGGTACCC+AGG | 0.624704 | 3.3:-76851628 | None:intergenic |
| ACGTCTTCCATCTAGAAGGT+GGG | 0.626570 | 3.3:+76853335 | MS.gene06655:CDS |
| CCAGGATTGTAAATATGATG+TGG | 0.629329 | 3.3:-76851610 | None:intergenic |
| TGCACGTTAATTGCATCTGG+GGG | 0.637849 | 3.3:-76852437 | None:intergenic |
| ATAGTAGCTTGCTCAGCAGG+AGG | 0.650338 | 3.3:+76852690 | MS.gene06655:CDS |
| TCACGTGTACCTTCTAAGGA+AGG | 0.660526 | 3.3:-76851636 | None:intergenic |
| CCAACACAAAATCTGCCACA+AGG | 0.681974 | 3.3:+76852723 | MS.gene06655:CDS |
| GCCAGAAGCAGAGTTCAAGG+AGG | 0.748938 | 3.3:+76852241 | MS.gene06655:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAATTGATTGTAATATA+GGG | + | chr3.3:76852359-76852378 | MS.gene06655:intron | 15.0% |
| !! | AACTAAAAGATTGAAATGTT+TGG | + | chr3.3:76852029-76852048 | MS.gene06655:intron | 20.0% |
| !! | AACTAAATATTTGATTCATG+CGG | + | chr3.3:76852628-76852647 | MS.gene06655:intron | 20.0% |
| !! | ATAATATTCAAATCATCGAT+TGG | + | chr3.3:76853234-76853253 | MS.gene06655:intron | 20.0% |
| !! | GGTTTAATTGATTGTAATAT+AGG | + | chr3.3:76852358-76852377 | MS.gene06655:intron | 20.0% |
| !! | TTATATCACATGTAACAAAT+TGG | - | chr3.3:76853055-76853074 | None:intergenic | 20.0% |
| !!! | AAGACAAATTAGTTCTTTAT+CGG | + | chr3.3:76853094-76853113 | MS.gene06655:intron | 20.0% |
| !!! | CAAAATTATTTTCTTTCTGA+AGG | - | chr3.3:76852205-76852224 | None:intergenic | 20.0% |
| !!! | CAAAGACATTTAAATTTTAG+AGG | + | chr3.3:76852990-76853009 | MS.gene06655:intron | 20.0% |
| ! | AAAATGTAACATGAATGTAC+AGG | - | chr3.3:76852311-76852330 | None:intergenic | 25.0% |
| ! | AAACTTAACTTCACTTTCTT+TGG | + | chr3.3:76851839-76851858 | MS.gene06655:intron | 25.0% |
| ! | AATATAAATGCTAAAGATGC+AGG | - | chr3.3:76851982-76852001 | None:intergenic | 25.0% |
| ! | AGAAGGAAAAAAAAAACTGA+TGG | + | chr3.3:76852387-76852406 | MS.gene06655:intron | 25.0% |
| ! | CTATTTACTAATAAACAGCA+AGG | + | chr3.3:76852068-76852087 | MS.gene06655:intron | 25.0% |
| ! | TATCTTTGATCTAATGTTGT+AGG | + | chr3.3:76852148-76852167 | MS.gene06655:intron | 25.0% |
| ! | TTTACAGGCTTATAAAAGAA+TGG | + | chr3.3:76852462-76852481 | MS.gene06655:CDS | 25.0% |
| ! | TTTCATAATTGCATGAAAAG+TGG | - | chr3.3:76853213-76853232 | None:intergenic | 25.0% |
| !! | ATTTTGTGATTCTTGATGTA+AGG | + | chr3.3:76852219-76852238 | MS.gene06655:CDS | 25.0% |
| !!! | ACATTTAAATTTTAGAGGAC+AGG | + | chr3.3:76852995-76853014 | MS.gene06655:intron | 25.0% |
| !!! | TGTTGTGATTTTTGAGAATT+GGG | - | chr3.3:76851699-76851718 | None:intergenic | 25.0% |
| AAGAATATACAGACCAAAAC+TGG | + | chr3.3:76852873-76852892 | MS.gene06655:intron | 30.0% | |
| AATGTCTTTGAATCTGATGT+TGG | - | chr3.3:76852980-76852999 | None:intergenic | 30.0% | |
| AATGTTGTAGGTAAAAAGTG+TGG | + | chr3.3:76852160-76852179 | MS.gene06655:intron | 30.0% | |
| ATCTTACACTTGATAAACTC+GGG | - | chr3.3:76852557-76852576 | None:intergenic | 30.0% | |
| ATGAGCAATATTGAAAAACC+AGG | - | chr3.3:76852807-76852826 | None:intergenic | 30.0% | |
| ATTTGTCTATGATGAATGCA+GGG | + | chr3.3:76852410-76852429 | MS.gene06655:intron | 30.0% | |
| CACATCATATTTACAATCCT+GGG | + | chr3.3:76851611-76851630 | MS.gene06655:CDS | 30.0% | |
| CATCTTACACTTGATAAACT+CGG | - | chr3.3:76852558-76852577 | None:intergenic | 30.0% | |
| CATGCAATCCAAGTTATTAA+TGG | - | chr3.3:76853142-76853161 | None:intergenic | 30.0% | |
| CATTAATAACTTGGATTGCA+TGG | + | chr3.3:76853140-76853159 | MS.gene06655:intron | 30.0% | |
| GCTTTACAAATGGTTTAAAG+AGG | + | chr3.3:76853357-76853376 | MS.gene06655:CDS | 30.0% | |
| TACTAATAAACAGCAAGGAT+CGG | + | chr3.3:76852073-76852092 | MS.gene06655:intron | 30.0% | |
| TGAGCAATATTGAAAAACCA+GGG | - | chr3.3:76852806-76852825 | None:intergenic | 30.0% | |
| ! | GTATTCTTATTTGTGCATTC+AGG | - | chr3.3:76851960-76851979 | None:intergenic | 30.0% |
| ! | TCACATTTTTGTACTTTCGT+AGG | + | chr3.3:76853269-76853288 | MS.gene06655:intron | 30.0% |
| ! | TGTAATATAGGGTACTAAGA+AGG | + | chr3.3:76852370-76852389 | MS.gene06655:intron | 30.0% |
| ! | TGTCTTTTTATTACTCTCTC+TGG | - | chr3.3:76853080-76853099 | None:intergenic | 30.0% |
| ! | TTATCGGCTAAAATACACAA+TGG | + | chr3.3:76853110-76853129 | MS.gene06655:intron | 30.0% |
| !! | AAATCTTTAAAGTGCTGTGA+CGG | - | chr3.3:76851814-76851833 | None:intergenic | 30.0% |
| !! | CTGTTGTGATTTTTGAGAAT+TGG | - | chr3.3:76851700-76851719 | None:intergenic | 30.0% |
| !!! | GCATTTTTTGGTATTTTCTC+TGG | + | chr3.3:76852518-76852537 | MS.gene06655:CDS | 30.0% |
| AAAGTGCAAACACACTCAAA+AGG | - | chr3.3:76852953-76852972 | None:intergenic | 35.0% | |
| AATTCAAGAAATGCACGTTG+AGG | - | chr3.3:76852587-76852606 | None:intergenic | 35.0% | |
| ACATGAATGTACAGGTACAT+TGG | - | chr3.3:76852303-76852322 | None:intergenic | 35.0% | |
| AGAATTGCTGCTGCAAAAAA+GGG | + | chr3.3:76851896-76851915 | MS.gene06655:CDS | 35.0% | |
| AGGTAATAGCTGAAGAAGAA+TGG | + | chr3.3:76851862-76851881 | MS.gene06655:intron | 35.0% | |
| ATATACAGACCAAAACTGGT+TGG | + | chr3.3:76852877-76852896 | MS.gene06655:intron | 35.0% | |
| ATCACATGTAACAAATTGGC+AGG | - | chr3.3:76853051-76853070 | None:intergenic | 35.0% | |
| CAATTAACGTGCAAGTTTAC+AGG | + | chr3.3:76852447-76852466 | MS.gene06655:CDS | 35.0% | |
| CCACATCATATTTACAATCC+TGG | + | chr3.3:76851610-76851629 | MS.gene06655:CDS | 35.0% | |
| CCAGGATTGTAAATATGATG+TGG | - | chr3.3:76851613-76851632 | None:intergenic | 35.0% | |
| CTTAACTTCACTTTCTTTGG+AGG | + | chr3.3:76851842-76851861 | MS.gene06655:intron | 35.0% | |
| GATTTGTCTATGATGAATGC+AGG | + | chr3.3:76852409-76852428 | MS.gene06655:intron | 35.0% | |
| GTACACGTGATCAAAATTCA+TGG | + | chr3.3:76851649-76851668 | MS.gene06655:CDS | 35.0% | |
| TATAAAAGAATGGACAGCCT+GGG | + | chr3.3:76852472-76852491 | MS.gene06655:CDS | 35.0% | |
| TTATAAAAGAATGGACAGCC+TGG | + | chr3.3:76852471-76852490 | MS.gene06655:CDS | 35.0% | |
| ! | AAATTGTTGCCAACCAGTTT+TGG | - | chr3.3:76852889-76852908 | None:intergenic | 35.0% |
| ! | CTTACTTGCTAGTCCTTAAT+GGG | + | chr3.3:76853305-76853324 | MS.gene06655:CDS | 35.0% |
| ! | TCTAATTTTTCATCGACAGC+TGG | - | chr3.3:76852654-76852673 | None:intergenic | 35.0% |
| AACAACGTCTTCCATCTAGA+AGG | + | chr3.3:76853331-76853350 | MS.gene06655:CDS | 40.0% | |
| ACTTGCACGTTAATTGCATC+TGG | - | chr3.3:76852443-76852462 | None:intergenic | 40.0% | |
| AGACGTTGTTGTACCCATTA+AGG | - | chr3.3:76853321-76853340 | None:intergenic | 40.0% | |
| AGTAACTCAGAACAGATACC+TGG | - | chr3.3:76851777-76851796 | None:intergenic | 40.0% | |
| CACAACAGAACTTTGCAAGA+GGG | + | chr3.3:76851712-76851731 | MS.gene06655:CDS | 40.0% | |
| CATGTAACAAATTGGCAGGA+TGG | - | chr3.3:76853047-76853066 | None:intergenic | 40.0% | |
| CGGCTAAAATACACAATGGA+AGG | + | chr3.3:76853114-76853133 | MS.gene06655:intron | 40.0% | |
| CTTGCACGTTAATTGCATCT+GGG | - | chr3.3:76852442-76852461 | None:intergenic | 40.0% | |
| GAGAATTGCTGCTGCAAAAA+AGG | + | chr3.3:76851895-76851914 | MS.gene06655:CDS | 40.0% | |
| TACATTGGAGCTGGAAAACA+AGG | - | chr3.3:76852288-76852307 | None:intergenic | 40.0% | |
| TACCTAGATTGTTGACCTTG+TGG | - | chr3.3:76852741-76852760 | None:intergenic | 40.0% | |
| TCACAACAGAACTTTGCAAG+AGG | + | chr3.3:76851711-76851730 | MS.gene06655:CDS | 40.0% | |
| TGATATAGCTGAAAGCTGCA+TGG | + | chr3.3:76853181-76853200 | MS.gene06655:intron | 40.0% | |
| TGCAAACACACTCAAAAGGT+GGG | - | chr3.3:76852949-76852968 | None:intergenic | 40.0% | |
| TTGATCACGTGTACCTTCTA+AGG | - | chr3.3:76851643-76851662 | None:intergenic | 40.0% | |
| TTGCACGTTAATTGCATCTG+GGG | - | chr3.3:76852441-76852460 | None:intergenic | 40.0% | |
| ! | CATTTTCTGTGTCTCTCTTG+TGG | + | chr3.3:76852325-76852344 | MS.gene06655:intron | 40.0% |
| ! | GCTTACTTGCTAGTCCTTAA+TGG | + | chr3.3:76853304-76853323 | MS.gene06655:CDS | 40.0% |
| ! | TAGAAGGTGGGCTTTACAAA+TGG | + | chr3.3:76853347-76853366 | MS.gene06655:CDS | 40.0% |
| !! | ATAATAGTAGCTTGCTCAGC+AGG | + | chr3.3:76852687-76852706 | MS.gene06655:CDS | 40.0% |
| !! | GGAAGGTGCCATTAATAACT+TGG | + | chr3.3:76853131-76853150 | MS.gene06655:intron | 40.0% |
| !! | GGATCGGTTTGCGTAAATAA+TGG | - | chr3.3:76852923-76852942 | None:intergenic | 40.0% |
| !!! | CGTGCTGCATTTGCATTTTT+TGG | + | chr3.3:76852506-76852525 | MS.gene06655:CDS | 40.0% |
| AAATGCAAATGCAGCACGTC+TGG | - | chr3.3:76852504-76852523 | None:intergenic | 45.0% | |
| AACACACTCAAAAGGTGGGT+TGG | - | chr3.3:76852945-76852964 | None:intergenic | 45.0% | |
| AACGTCTTCCATCTAGAAGG+TGG | + | chr3.3:76853334-76853353 | MS.gene06655:CDS | 45.0% | |
| ACGTCTTCCATCTAGAAGGT+GGG | + | chr3.3:76853335-76853354 | MS.gene06655:CDS | 45.0% | |
| AGAACAGATACCTGGTGACT+TGG | - | chr3.3:76851769-76851788 | None:intergenic | 45.0% | |
| ATGTACAGGTACATTGGAGC+TGG | - | chr3.3:76852297-76852316 | None:intergenic | 45.0% | |
| CCAACACAAAATCTGCCACA+AGG | + | chr3.3:76852723-76852742 | MS.gene06655:CDS | 45.0% | |
| CTCTCTTGTGGCTTCTACTT+GGG | + | chr3.3:76852337-76852356 | MS.gene06655:intron | 45.0% | |
| GTGCAAACACACTCAAAAGG+TGG | - | chr3.3:76852950-76852969 | None:intergenic | 45.0% | |
| TCTCTCTTGTGGCTTCTACT+TGG | + | chr3.3:76852336-76852355 | MS.gene06655:intron | 45.0% | |
| TGCACGTTAATTGCATCTGG+GGG | - | chr3.3:76852440-76852459 | None:intergenic | 45.0% | |
| TGCCACAAGGTCAACAATCT+AGG | + | chr3.3:76852736-76852755 | MS.gene06655:CDS | 45.0% | |
| TGTAAAGCCCACCTTCTAGA+TGG | - | chr3.3:76853345-76853364 | None:intergenic | 45.0% | |
| ! | ACACACTCAAAAGGTGGGTT+GGG | - | chr3.3:76852944-76852963 | None:intergenic | 45.0% |
| ! | CCTTGTGGCAGATTTTGTGT+TGG | - | chr3.3:76852726-76852745 | None:intergenic | 45.0% |
| ! | GGTAAAAAGTGTGGAGCCAA+AGG | + | chr3.3:76852169-76852188 | MS.gene06655:intron | 45.0% |
| ! | TCACGTGTACCTTCTAAGGA+AGG | - | chr3.3:76851639-76851658 | None:intergenic | 45.0% |
| ! | TGTGCATTCAGGAGAGTATG+CGG | - | chr3.3:76851949-76851968 | None:intergenic | 45.0% |
| AAGGCCAGAAGCAGAGTTCA+AGG | + | chr3.3:76852238-76852257 | MS.gene06655:CDS | 50.0% | |
| ACAAAACCAGCCAAGTCACC+AGG | + | chr3.3:76851756-76851775 | MS.gene06655:CDS | 50.0% | |
| ACCTCCTTGAACTCTGCTTC+TGG | - | chr3.3:76852245-76852264 | None:intergenic | 50.0% | |
| CGTTAATTGCATCTGGGGGA+TGG | - | chr3.3:76852436-76852455 | None:intergenic | 50.0% | |
| TCCTGGGTACCTTCCTTAGA+AGG | + | chr3.3:76851627-76851646 | MS.gene06655:CDS | 50.0% | |
| TGAGCATGCTTTCATCTCCC+TGG | + | chr3.3:76852786-76852805 | MS.gene06655:intron | 50.0% | |
| ! | AGGGAGATGAAAGCATGCTC+AGG | - | chr3.3:76852787-76852806 | None:intergenic | 50.0% |
| ! | GGGAGATGAAAGCATGCTCA+GGG | - | chr3.3:76852786-76852805 | None:intergenic | 50.0% |
| !! | ACCTTCTAAGGAAGGTACCC+AGG | - | chr3.3:76851631-76851650 | None:intergenic | 50.0% |
| !! | ATAGTAGCTTGCTCAGCAGG+AGG | + | chr3.3:76852690-76852709 | MS.gene06655:CDS | 50.0% |
| !! | CTCAAAAGGTGGGTTGGGAT+CGG | - | chr3.3:76852939-76852958 | None:intergenic | 50.0% |
| !!! | TGGTGACTTGGCTGGTTTTG+TGG | - | chr3.3:76851757-76851776 | None:intergenic | 50.0% |
| ATGCGGCGCACAGATGATAG+AGG | - | chr3.3:76851932-76851951 | None:intergenic | 55.0% | |
| GCCAGAAGCAGAGTTCAAGG+AGG | + | chr3.3:76852241-76852260 | MS.gene06655:CDS | 55.0% | |
| ! | CAGATACCTGGTGACTTGGC+TGG | - | chr3.3:76851765-76851784 | None:intergenic | 55.0% |
| ! | TGAAGGCGCAGAGCTTCCTT+TGG | - | chr3.3:76852188-76852207 | None:intergenic | 55.0% |
| ACTCCTCTGCTACAGCTGGC+AGG | - | chr3.3:76853384-76853403 | None:intergenic | 60.0% | |
| AGCACGTCTGGCAATGTCCC+AGG | - | chr3.3:76852492-76852511 | None:intergenic | 60.0% | |
| !!! | CTGGTTTTGTGGCTGCGCTC+TGG | - | chr3.3:76851746-76851765 | None:intergenic | 60.0% |
| GGACCTGCCAGCTGTAGCAG+AGG | + | chr3.3:76853378-76853397 | MS.gene06655:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76851576 | 76853405 | 76851576 | ID=MS.gene06655 |
| chr3.3 | mRNA | 76851576 | 76853405 | 76851576 | ID=MS.gene06655.t1;Parent=MS.gene06655 |
| chr3.3 | exon | 76851576 | 76851777 | 76851576 | ID=MS.gene06655.t1.exon1;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76851576 | 76851777 | 76851576 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| chr3.3 | exon | 76851871 | 76851917 | 76851871 | ID=MS.gene06655.t1.exon2;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76851871 | 76851917 | 76851871 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| chr3.3 | exon | 76852170 | 76852262 | 76852170 | ID=MS.gene06655.t1.exon3;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76852170 | 76852262 | 76852170 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| chr3.3 | exon | 76852431 | 76852569 | 76852431 | ID=MS.gene06655.t1.exon4;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76852431 | 76852569 | 76852431 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| chr3.3 | exon | 76852655 | 76852757 | 76852655 | ID=MS.gene06655.t1.exon5;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76852655 | 76852757 | 76852655 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| chr3.3 | exon | 76853291 | 76853405 | 76853291 | ID=MS.gene06655.t1.exon6;Parent=MS.gene06655.t1 |
| chr3.3 | CDS | 76853291 | 76853405 | 76853291 | ID=cds.MS.gene06655.t1;Parent=MS.gene06655.t1 |
| Gene Sequence |
| Protein sequence |
