Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067553.t1 | ABC75363.2 | 98.3 | 417 | 7 | 0 | 4 | 420 | 147 | 563 | 2.50E-219 | 771.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067553.t1 | Q56XV8 | 72.9 | 421 | 113 | 1 | 1 | 420 | 138 | 558 | 5.1e-168 | 592.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067553.t1 | G7JJY0 | 98.3 | 417 | 7 | 0 | 4 | 420 | 35 | 451 | 1.8e-219 | 771.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene067553 | 0.846267 | 2.42E-59 | -1.69E-46 |
| MS.gene049151 | MS.gene067553 | 0.834688 | 2.59E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene067553 | 0.84754 | 1.08E-59 | -1.69E-46 |
| MS.gene049230 | MS.gene067553 | 0.825368 | 4.87E-54 | -1.69E-46 |
| MS.gene049260 | MS.gene067553 | 0.810853 | 9.38E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene067553 | 0.856987 | 2.22E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene067553 | 0.80861 | 2.85E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene067553 | 0.825977 | 3.49E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene067553 | 0.863376 | 2.60E-64 | -1.69E-46 |
| MS.gene050227 | MS.gene067553 | 0.864643 | 1.05E-64 | -1.69E-46 |
| MS.gene050228 | MS.gene067553 | 0.861991 | 6.95E-64 | -1.69E-46 |
| MS.gene050398 | MS.gene067553 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene067553 | 0.813314 | 2.72E-51 | -1.69E-46 |
| MS.gene050605 | MS.gene067553 | 0.800377 | 1.48E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene067553 | -0.875117 | 3.97E-68 | -1.69E-46 |
| MS.gene050642 | MS.gene067553 | 0.864307 | 1.34E-64 | -1.69E-46 |
| MS.gene050762 | MS.gene067553 | 0.833243 | 5.96E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene067553 | 0.833763 | 4.42E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene067553 | 0.803047 | 4.20E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene067553 | 0.822635 | 2.13E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene067553 | 0.86245 | 5.02E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene067553 | 0.893838 | 4.33E-75 | -1.69E-46 |
| MS.gene052077 | MS.gene067553 | 0.859593 | 3.72E-63 | -1.69E-46 |
| MS.gene052176 | MS.gene067553 | 0.81398 | 1.95E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene067553 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene067553 | 0.818531 | 1.87E-52 | -1.69E-46 |
| MS.gene052389 | MS.gene067553 | 0.82465 | 7.20E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene067553 | 0.80315 | 4.00E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene067553 | 0.851112 | 1.10E-60 | -1.69E-46 |
| MS.gene053494 | MS.gene067553 | 0.82388 | 1.09E-53 | -1.69E-46 |
| MS.gene053577 | MS.gene067553 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene067553 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene067553 | 0.821178 | 4.64E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene067553 | 0.805939 | 1.05E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene067553 | 0.828006 | 1.14E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene067553 | 0.82972 | 4.40E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene067553 | 0.840333 | 9.26E-58 | -1.69E-46 |
| MS.gene054468 | MS.gene067553 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene067553 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene067553 | 0.844184 | 8.85E-59 | -1.69E-46 |
| MS.gene05510 | MS.gene067553 | 0.823828 | 1.12E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene067553 | 0.830541 | 2.77E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene067553 | 0.824237 | 9.00E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene067553 | 0.857494 | 1.57E-62 | -1.69E-46 |
| MS.gene05595 | MS.gene067553 | 0.803783 | 2.96E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene067553 | 0.836851 | 7.34E-57 | -1.69E-46 |
| MS.gene056506 | MS.gene067553 | 0.826624 | 2.45E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene067553 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene067553 | 0.888054 | 8.29E-73 | -1.69E-46 |
| MS.gene057396 | MS.gene067553 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene067553 | 0.813437 | 2.56E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene067553 | 0.803923 | 2.76E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene067553 | 0.821659 | 3.59E-53 | -1.69E-46 |
| MS.gene058139 | MS.gene067553 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene067553 | 0.853338 | 2.55E-61 | -1.69E-46 |
| MS.gene058146 | MS.gene067553 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene067553 | 0.812418 | 4.28E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene067553 | 0.833401 | 5.45E-56 | -1.69E-46 |
| MS.gene058710 | MS.gene067553 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene067553 | 0.810071 | 1.38E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene067553 | 0.829268 | 5.66E-55 | -1.69E-46 |
| MS.gene059161 | MS.gene067553 | 0.824872 | 6.38E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene067553 | 0.81739 | 3.38E-52 | -1.69E-46 |
| MS.gene059609 | MS.gene067553 | 0.83835 | 3.03E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene067553 | 0.840189 | 1.01E-57 | -1.69E-46 |
| MS.gene059899 | MS.gene067553 | 0.801789 | 7.63E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene067553 | 0.825553 | 4.40E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene067553 | 0.837129 | 6.23E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene067553 | 0.832735 | 7.98E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene067553 | 0.81531 | 9.87E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene067553 | 0.802936 | 4.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067553.t1 | MTR_4g084130 | 98.086 | 418 | 8 | 0 | 3 | 420 | 34 | 451 | 0.0 | 827 |
| MS.gene067553.t1 | MTR_4g084130 | 98.086 | 418 | 8 | 0 | 3 | 420 | 146 | 563 | 0.0 | 826 |
| MS.gene067553.t1 | MTR_4g057970 | 64.988 | 417 | 146 | 0 | 4 | 420 | 155 | 571 | 0.0 | 556 |
| MS.gene067553.t1 | MTR_1g017390 | 47.722 | 417 | 216 | 2 | 4 | 419 | 156 | 571 | 5.56e-130 | 387 |
| MS.gene067553.t1 | MTR_1g017380 | 47.722 | 417 | 216 | 2 | 4 | 419 | 156 | 571 | 6.61e-130 | 387 |
| MS.gene067553.t1 | MTR_1g090130 | 41.388 | 418 | 240 | 4 | 4 | 419 | 141 | 555 | 2.11e-100 | 310 |
| MS.gene067553.t1 | MTR_1g090140 | 39.518 | 415 | 248 | 2 | 4 | 417 | 141 | 553 | 1.73e-98 | 305 |
| MS.gene067553.t1 | MTR_8g017080 | 37.170 | 417 | 259 | 2 | 4 | 419 | 142 | 556 | 4.55e-92 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067553.t1 | AT5G18820 | 73.270 | 419 | 111 | 1 | 3 | 420 | 34 | 452 | 0.0 | 603 |
| MS.gene067553.t1 | AT5G18820 | 73.270 | 419 | 111 | 1 | 3 | 420 | 140 | 558 | 0.0 | 602 |
| MS.gene067553.t1 | AT2G28000 | 63.942 | 416 | 150 | 0 | 4 | 419 | 154 | 569 | 0.0 | 547 |
| MS.gene067553.t1 | AT1G55490 | 47.847 | 418 | 214 | 4 | 4 | 419 | 165 | 580 | 2.88e-129 | 385 |
| MS.gene067553.t1 | AT1G55490 | 47.847 | 418 | 214 | 4 | 4 | 419 | 165 | 580 | 2.88e-129 | 385 |
| MS.gene067553.t1 | AT1G55490 | 47.847 | 418 | 214 | 4 | 4 | 419 | 165 | 580 | 2.88e-129 | 385 |
| MS.gene067553.t1 | AT1G55490 | 47.847 | 418 | 214 | 4 | 4 | 419 | 165 | 580 | 2.88e-129 | 385 |
| MS.gene067553.t1 | AT1G55490 | 47.847 | 418 | 214 | 4 | 4 | 419 | 165 | 580 | 2.88e-129 | 385 |
| MS.gene067553.t1 | AT5G18820 | 72.527 | 273 | 75 | 0 | 3 | 275 | 140 | 412 | 4.03e-129 | 380 |
| MS.gene067553.t1 | AT5G56500 | 48.565 | 418 | 211 | 4 | 4 | 419 | 161 | 576 | 7.21e-128 | 382 |
| MS.gene067553.t1 | AT5G56500 | 48.565 | 418 | 211 | 4 | 4 | 419 | 161 | 576 | 7.21e-128 | 382 |
| MS.gene067553.t1 | AT3G13470 | 47.368 | 418 | 216 | 4 | 4 | 419 | 161 | 576 | 1.85e-127 | 380 |
| MS.gene067553.t1 | AT1G26230 | 42.482 | 419 | 235 | 5 | 4 | 419 | 89 | 504 | 4.15e-109 | 332 |
| MS.gene067553.t1 | AT1G26230 | 42.482 | 419 | 235 | 5 | 4 | 419 | 97 | 512 | 5.05e-109 | 332 |
| MS.gene067553.t1 | AT1G26230 | 42.482 | 419 | 235 | 5 | 4 | 419 | 149 | 564 | 1.96e-108 | 332 |
| MS.gene067553.t1 | AT3G23990 | 40.380 | 421 | 240 | 5 | 4 | 419 | 140 | 554 | 3.62e-98 | 305 |
| MS.gene067553.t1 | AT2G33210 | 39.234 | 418 | 249 | 4 | 4 | 419 | 141 | 555 | 2.41e-94 | 295 |
| MS.gene067553.t1 | AT3G13860 | 40.580 | 414 | 241 | 3 | 4 | 415 | 140 | 550 | 2.90e-94 | 295 |
| MS.gene067553.t1 | AT1G26230 | 42.975 | 363 | 202 | 4 | 4 | 364 | 149 | 508 | 1.07e-92 | 290 |
| MS.gene067553.t1 | AT2G33210 | 38.756 | 418 | 246 | 5 | 4 | 419 | 141 | 550 | 1.08e-90 | 285 |
| MS.gene067553.t1 | AT1G26230 | 43.581 | 296 | 162 | 4 | 4 | 297 | 149 | 441 | 2.42e-74 | 240 |
Find 87 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCATGGAGTTCTTTA+TGG | 0.165963 | 4.2:+25790585 | None:intergenic |
| GGATTATCAGCAGTTGCTTT+TGG | 0.205560 | 4.2:-25793936 | None:intergenic |
| AAATATAGTTGTTGCATTAC+TGG | 0.223714 | 4.2:+25792141 | None:intergenic |
| ATTCCCTTCTTCAGAGAAAT+AGG | 0.235778 | 4.2:+25793905 | None:intergenic |
| TCTAACTACTCAAGCTATAT+TGG | 0.244652 | 4.2:-25788999 | MS.gene067553:CDS |
| AGGAACAAGTCCCTCATTTA+TGG | 0.247557 | 4.2:+25790651 | None:intergenic |
| TGCCACATATGTCCACCTTT+TGG | 0.268341 | 4.2:-25790620 | MS.gene067553:CDS |
| GTTTGACAATGCTAAAGTTT+TGG | 0.318990 | 4.2:-25792996 | MS.gene067553:CDS |
| CAAAGAAATAGTTCCTTTGC+TGG | 0.343686 | 4.2:-25792948 | MS.gene067553:CDS |
| TGAATTTCAGCCTTAGTGTT+TGG | 0.363338 | 4.2:+25792112 | None:intergenic |
| ATAAATGAGGGACTTGTTCC+TGG | 0.377624 | 4.2:-25790649 | MS.gene067553:CDS |
| TTCTTTCCATCTCCGAGTCC+TGG | 0.378180 | 4.2:+25792803 | None:intergenic |
| ATATGATCCCTTCCTTCAAC+AGG | 0.380233 | 4.2:+25793833 | None:intergenic |
| AAACACTAAGGCTGAAATTC+AGG | 0.392021 | 4.2:-25792110 | MS.gene067553:CDS |
| GGAAAAGACAGTAAAAGATT+TGG | 0.397877 | 4.2:-25793882 | MS.gene067553:CDS |
| TCCTGGTTGGTGATGAAGTA+AGG | 0.397913 | 4.2:+25793034 | None:intergenic |
| ATAGAGAAGATTGGATTTGA+TGG | 0.411296 | 4.2:-25793653 | MS.gene067553:CDS |
| GAAGATCTAGATGAGCAAAT+TGG | 0.420249 | 4.2:-25790568 | MS.gene067553:CDS |
| GGATAGAAAGCTGAGGATTG+AGG | 0.422156 | 4.2:-25790698 | MS.gene067553:CDS |
| TGGCGGTATAGCCGTTATAA+AGG | 0.429730 | 4.2:-25791999 | MS.gene067553:intron |
| TTATTTCTGTACAGATTGAC+AGG | 0.431467 | 4.2:-25793069 | MS.gene067553:intron |
| GATTTGGGTCTTACACTTGA+AGG | 0.439787 | 4.2:-25792208 | MS.gene067553:CDS |
| GCAGCTAATGCTGGAGTTGA+TGG | 0.441043 | 4.2:-25789178 | MS.gene067553:CDS |
| AAGAGAAGTATTCCTGTTGA+AGG | 0.446858 | 4.2:-25793845 | MS.gene067553:CDS |
| GCTGAAGCTATAGAGAAGAT+TGG | 0.448331 | 4.2:-25793662 | MS.gene067553:CDS |
| AAATCAATTGCAGCTAATGC+TGG | 0.460888 | 4.2:-25789187 | MS.gene067553:CDS |
| TCCATGGAGTTCTTTATGGC+AGG | 0.461420 | 4.2:+25790589 | None:intergenic |
| ACCTCTGTGGTAATTGAAGA+AGG | 0.463210 | 4.2:-25793596 | MS.gene067553:CDS |
| AAATCCTATTTCTCTGAAGA+AGG | 0.464428 | 4.2:-25793909 | MS.gene067553:CDS |
| TGAATTAGATACCTTTATAA+CGG | 0.468547 | 4.2:+25791988 | None:intergenic |
| TAGAGAAGATTGGATTTGAT+GGG | 0.484021 | 4.2:-25793652 | MS.gene067553:CDS |
| TTAGCTGCAATTGATTTAGC+AGG | 0.491114 | 4.2:+25789193 | None:intergenic |
| ATCGGATACAATGCCATGAC+TGG | 0.491599 | 4.2:-25789115 | MS.gene067553:CDS |
| AGAACATTTGACTGGAGAAT+CGG | 0.495354 | 4.2:-25789133 | MS.gene067553:CDS |
| GAGAGAATTGCGAAACTCAC+TGG | 0.501133 | 4.2:-25792019 | MS.gene067553:CDS |
| GCTGTAGCCTCGATTTCTGC+TGG | 0.501335 | 4.2:-25793713 | MS.gene067553:CDS |
| TCTCTGAGAGCTTTCTCGAA+TGG | 0.502708 | 4.2:+25792038 | None:intergenic |
| TTGCTCATCTAGATCTTCCA+TGG | 0.508453 | 4.2:+25790573 | None:intergenic |
| CTTTCATTGCAGTACCAAGC+TGG | 0.512828 | 4.2:+25792173 | None:intergenic |
| CAAGATATTGCGCTAATGAC+GGG | 0.512997 | 4.2:-25792770 | MS.gene067553:intron |
| GAGGGACTTGTTCCTGGAGG+GGG | 0.523820 | 4.2:-25790643 | MS.gene067553:CDS |
| ATGAGGGACTTGTTCCTGGA+GGG | 0.540906 | 4.2:-25790645 | MS.gene067553:CDS |
| ACAAGATATTGCGCTAATGA+CGG | 0.542621 | 4.2:-25792771 | MS.gene067553:CDS |
| GCACATCTTGCAACTCGACT+AGG | 0.544259 | 4.2:+25789055 | None:intergenic |
| AAATGTCCAGGACTCGGAGA+TGG | 0.545018 | 4.2:-25792809 | MS.gene067553:CDS |
| GAAGTATTCCTGTTGAAGGA+AGG | 0.546321 | 4.2:-25793841 | MS.gene067553:CDS |
| TGCAGTCTCCATTGCTAGCG+TGG | 0.548928 | 4.2:-25789023 | MS.gene067553:CDS |
| TGCTCCGCTCTTAATTATTG+CGG | 0.552174 | 4.2:-25792906 | MS.gene067553:CDS |
| GCTGTAAAATGTCCAGGACT+CGG | 0.553014 | 4.2:-25792815 | MS.gene067553:CDS |
| GGACGTCACTGCACAAGTGT+TGG | 0.553988 | 4.2:-25792882 | MS.gene067553:CDS |
| CACAGAGGTTTCAGATGATG+AGG | 0.555060 | 4.2:+25793610 | None:intergenic |
| TGGCAGGTATCAAGTCCAAA+AGG | 0.555888 | 4.2:+25790605 | None:intergenic |
| GTTGCAGCTGTAAAATGTCC+AGG | 0.557223 | 4.2:-25792821 | MS.gene067553:CDS |
| GGTAATTGAAGAAGGGATGA+AGG | 0.557464 | 4.2:-25793588 | MS.gene067553:intron |
| AGAAGACTAGAACATTTGAC+TGG | 0.559546 | 4.2:-25789141 | MS.gene067553:CDS |
| TATTTCTCTGAAGAAGGGAA+TGG | 0.563382 | 4.2:-25793903 | MS.gene067553:CDS |
| GTCCAAAAGGTGGACATATG+TGG | 0.568776 | 4.2:+25790618 | None:intergenic |
| ATTTGCTGATCCAAACACTA+AGG | 0.569532 | 4.2:-25792122 | MS.gene067553:CDS |
| AAGTATTCCTGTTGAAGGAA+GGG | 0.570813 | 4.2:-25793840 | MS.gene067553:CDS |
| ATCTTCATATGTGCCAGTCA+TGG | 0.575331 | 4.2:+25789102 | None:intergenic |
| AGTTAGAACCACGCTAGCAA+TGG | 0.576905 | 4.2:+25789015 | None:intergenic |
| AATCCTATTTCTCTGAAGAA+GGG | 0.583638 | 4.2:-25793908 | MS.gene067553:CDS |
| ACCTGCCATAAAGAACTCCA+TGG | 0.595150 | 4.2:-25790590 | MS.gene067553:CDS |
| CCTCTGTGGTAATTGAAGAA+GGG | 0.595263 | 4.2:-25793595 | MS.gene067553:CDS |
| TGAGGGACTTGTTCCTGGAG+GGG | 0.606887 | 4.2:-25790644 | MS.gene067553:CDS |
| GAAGGAAGGGATCATATCAA+AGG | 0.607458 | 4.2:-25793827 | MS.gene067553:intron |
| TCCGCTCTTAATTATTGCGG+AGG | 0.608855 | 4.2:-25792903 | MS.gene067553:CDS |
| TCCTTACTTCATCACCAACC+AGG | 0.611481 | 4.2:-25793035 | MS.gene067553:CDS |
| TGGTGCTGATATTGTGGCGA+AGG | 0.622265 | 4.2:-25790548 | MS.gene067553:intron |
| TTAATAGTGAACAAAATGCA+AGG | 0.624427 | 4.2:-25792854 | MS.gene067553:CDS |
| ACACACTGAGCTAGAACTTG+AGG | 0.625418 | 4.2:-25790719 | MS.gene067553:CDS |
| AGAGAAGATTGGATTTGATG+GGG | 0.625525 | 4.2:-25793651 | MS.gene067553:CDS |
| AGCATTGTCAAACTCCACAA+TGG | 0.627191 | 4.2:+25793006 | None:intergenic |
| GCAAATTGGTGCTGATATTG+TGG | 0.629535 | 4.2:-25790554 | MS.gene067553:CDS |
| TATTTCTGTACAGATTGACA+GGG | 0.629984 | 4.2:-25793068 | MS.gene067553:intron |
| GTCATTTCCAGCAGAAATCG+AGG | 0.631622 | 4.2:+25793706 | None:intergenic |
| GCTGGAAATGACGAGTATGT+TGG | 0.642275 | 4.2:-25793695 | MS.gene067553:CDS |
| GGTACAACATCAGACCAGCT+TGG | 0.642489 | 4.2:-25792187 | MS.gene067553:CDS |
| CCCTTCTTCAATTACCACAG+AGG | 0.655595 | 4.2:+25793595 | None:intergenic |
| CTCATCATCTGAAACCTCTG+TGG | 0.670644 | 4.2:-25793609 | MS.gene067553:CDS |
| AGATGATGAGGATGACTCGA+TGG | 0.671433 | 4.2:+25793622 | None:intergenic |
| CAGGTATCAAGTCCAAAAGG+TGG | 0.673351 | 4.2:+25790608 | None:intergenic |
| ATTTCTGTACAGATTGACAG+GGG | 0.693379 | 4.2:-25793067 | MS.gene067553:intron |
| TCCTCCGCAATAATTAAGAG+CGG | 0.695220 | 4.2:+25792902 | None:intergenic |
| AATGAGGGACTTGTTCCTGG+AGG | 0.707403 | 4.2:-25790646 | MS.gene067553:CDS |
| AACTTGAGGATAGAAAGCTG+AGG | 0.724054 | 4.2:-25790705 | MS.gene067553:CDS |
| AGAATTGCGAAACTCACTGG+CGG | 0.733428 | 4.2:-25792016 | MS.gene067553:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTGCTATATTTATA+GGG | + | chr4.2:25789393-25789412 | None:intergenic | 10.0% |
| !! | AACATAATATGAATATATAA+AGG | - | chr4.2:25789521-25789540 | MS.gene067553:intron | 10.0% |
| !! | ATTTATGATGATAATAATTA+GGG | - | chr4.2:25789350-25789369 | MS.gene067553:intron | 10.0% |
| !! | GAACTATTATTAAAATTATT+AGG | + | chr4.2:25789748-25789767 | None:intergenic | 10.0% |
| !! | TAAAAAATTGCTATATTTAT+AGG | + | chr4.2:25789394-25789413 | None:intergenic | 10.0% |
| !! | TATTTATGATGATAATAATT+AGG | - | chr4.2:25789349-25789368 | MS.gene067553:intron | 10.0% |
| !!! | AACATTCAATTTTATTTTTT+AGG | - | chr4.2:25789672-25789691 | MS.gene067553:intron | 10.0% |
| !!! | AACATTTCATTTTATTTTTT+AGG | + | chr4.2:25789425-25789444 | None:intergenic | 10.0% |
| !!! | AATTATTTTAATAAAGTCTA+TGG | - | chr4.2:25790249-25790268 | MS.gene067553:intron | 10.0% |
| !!! | AATTTTTTTTGTTTTAGTTT+TGG | - | chr4.2:25789456-25789475 | MS.gene067553:intron | 10.0% |
| !!! | ACAAAATAATTTTTTTTGTA+AGG | - | chr4.2:25789644-25789663 | MS.gene067553:intron | 10.0% |
| !!! | ACATTCAATTTTATTTTTTA+GGG | - | chr4.2:25789673-25789692 | MS.gene067553:intron | 10.0% |
| !!! | ACATTTCATTTTATTTTTTA+GGG | + | chr4.2:25789424-25789443 | None:intergenic | 10.0% |
| !!! | ATTTTATTAATTTTAGTTTC+TGG | - | chr4.2:25793545-25793564 | MS.gene067553:intron | 10.0% |
| !! | AAATGTTAAATGAAAACAAA+AGG | + | chr4.2:25790329-25790348 | None:intergenic | 15.0% |
| !! | CAAAATTTGGTATATTTATA+AGG | - | chr4.2:25789704-25789723 | MS.gene067553:intron | 15.0% |
| !!! | ACAATAATTTTTTTTGAAGA+AGG | + | chr4.2:25792608-25792627 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTACTTAACTGT+TGG | - | chr4.2:25791476-25791495 | MS.gene067553:intron | 15.0% |
| !!! | TTGAATTTTGTTGTTTTATA+TGG | - | chr4.2:25790501-25790520 | MS.gene067553:intron | 15.0% |
| !!! | TTTAGTAATTTATTTGCTTT+TGG | + | chr4.2:25791964-25791983 | None:intergenic | 15.0% |
| !!! | TTTCATTTAACATTTTTAGT+TGG | - | chr4.2:25790334-25790353 | MS.gene067553:intron | 15.0% |
| !! | AAACATACCTCATTTATTTA+TGG | - | chr4.2:25792663-25792682 | MS.gene067553:intron | 20.0% |
| !! | AAAGAAAAAATATTCAGACT+CGG | + | chr4.2:25792433-25792452 | None:intergenic | 20.0% |
| !! | AAATAAATATCCTAGCAAAT+AGG | + | chr4.2:25793521-25793540 | None:intergenic | 20.0% |
| !! | AGTATTTCTTACTCTATTTA+AGG | - | chr4.2:25791022-25791041 | MS.gene067553:intron | 20.0% |
| !! | ATAAGTTATGATATAACAGT+AGG | - | chr4.2:25791784-25791803 | MS.gene067553:intron | 20.0% |
| !! | ATGTCAAAATTATATCCATT+AGG | + | chr4.2:25789484-25789503 | None:intergenic | 20.0% |
| !! | CTTTCTTATCTATTATTGTA+GGG | - | chr4.2:25791143-25791162 | MS.gene067553:intron | 20.0% |
| !! | TAAAGGTTGAACATAATAAA+CGG | - | chr4.2:25789538-25789557 | MS.gene067553:intron | 20.0% |
| !! | TCTTTCTTATCTATTATTGT+AGG | - | chr4.2:25791142-25791161 | MS.gene067553:intron | 20.0% |
| !! | TGAATTAGATACCTTTATAA+CGG | + | chr4.2:25790929-25790948 | None:intergenic | 20.0% |
| !! | TGTCAAAATTATATCCATTA+GGG | + | chr4.2:25789483-25789502 | None:intergenic | 20.0% |
| !! | TTGTGAATGTGAAAAATAAA+TGG | + | chr4.2:25791671-25791690 | None:intergenic | 20.0% |
| !! | TTTCTTTCCATGAAAAAATT+GGG | - | chr4.2:25792510-25792529 | MS.gene067553:intron | 20.0% |
| !!! | AAAATCTAAAACTCAACTAT+AGG | - | chr4.2:25791312-25791331 | MS.gene067553:intron | 20.0% |
| !!! | AAACGATAACTACATATTTT+TGG | + | chr4.2:25793218-25793237 | None:intergenic | 20.0% |
| !!! | AATTTTTTCATGGAAAGAAA+AGG | + | chr4.2:25792510-25792529 | None:intergenic | 20.0% |
| !!! | AGATTTTATTAATTCAACCA+AGG | - | chr4.2:25791056-25791075 | MS.gene067553:intron | 20.0% |
| !!! | ATCCTAAGATTCAATTTTTA+CGG | - | chr4.2:25791892-25791911 | MS.gene067553:intron | 20.0% |
| !!! | TAGAATTTTACAGATAAAGA+AGG | - | chr4.2:25790828-25790847 | MS.gene067553:intron | 20.0% |
| !!! | TGTATTTAAGATTTTAACCA+TGG | - | chr4.2:25792732-25792751 | MS.gene067553:intron | 20.0% |
| !!! | TTTATTTTTCACATTCACAA+TGG | - | chr4.2:25791671-25791690 | MS.gene067553:intron | 20.0% |
| !!! | TTTTCTTTCCATGAAAAAAT+TGG | - | chr4.2:25792509-25792528 | MS.gene067553:intron | 20.0% |
| ! | AAAAAAAACAATGAGCTACT+TGG | + | chr4.2:25791588-25791607 | None:intergenic | 25.0% |
| ! | AAAAAATATGTTGAGAATGC+AGG | - | chr4.2:25791919-25791938 | MS.gene067553:intron | 25.0% |
| ! | AAAATTGAATCTTAGGATGA+TGG | + | chr4.2:25791890-25791909 | None:intergenic | 25.0% |
| ! | AAAGGTTGAACATAATAAAC+GGG | - | chr4.2:25789539-25789558 | MS.gene067553:intron | 25.0% |
| ! | AAATATAGTTGTTGCATTAC+TGG | + | chr4.2:25790776-25790795 | None:intergenic | 25.0% |
| ! | AAATTGAATCTTAGGATGAT+GGG | + | chr4.2:25791889-25791908 | None:intergenic | 25.0% |
| ! | AAATTGTTGTGAAGAAACAA+TGG | - | chr4.2:25792069-25792088 | MS.gene067553:CDS | 25.0% |
| ! | ACAGTTGAAAAATGAGATAA+TGG | + | chr4.2:25790392-25790411 | None:intergenic | 25.0% |
| ! | ACATTCAGATGAACATAAAT+TGG | - | chr4.2:25789605-25789624 | MS.gene067553:intron | 25.0% |
| ! | CAAACTGAATTTATATTCCA+GGG | + | chr4.2:25793124-25793143 | None:intergenic | 25.0% |
| ! | CTAAAACAAAAAAAATTGCG+AGG | + | chr4.2:25789453-25789472 | None:intergenic | 25.0% |
| ! | GAAAAATGACCAACATTTAT+TGG | - | chr4.2:25793495-25793514 | MS.gene067553:intron | 25.0% |
| ! | GTGAAAAATAAATGGAATTG+AGG | + | chr4.2:25791663-25791682 | None:intergenic | 25.0% |
| ! | TACTAAATTTAAGTGCTTTG+TGG | - | chr4.2:25791977-25791996 | MS.gene067553:intron | 25.0% |
| ! | TAGGGACTAAAATCAAAATT+TGG | - | chr4.2:25789691-25789710 | MS.gene067553:intron | 25.0% |
| ! | TCTTAATGCAAACTTTAACA+TGG | + | chr4.2:25793299-25793318 | None:intergenic | 25.0% |
| ! | TGAACATAAATTGGTCATTA+AGG | - | chr4.2:25789614-25789633 | MS.gene067553:intron | 25.0% |
| ! | TTAATAGTGAACAAAATGCA+AGG | - | chr4.2:25790060-25790079 | MS.gene067553:intron | 25.0% |
| !! | GAAGTGTTTATTAGCTTATT+TGG | - | chr4.2:25791703-25791722 | MS.gene067553:intron | 25.0% |
| !! | TGAAATTTGCATATTTTGCA+AGG | - | chr4.2:25792547-25792566 | MS.gene067553:intron | 25.0% |
| !!! | TGCAAAACATTTGCTTTTTT+TGG | - | chr4.2:25791234-25791253 | MS.gene067553:intron | 25.0% |
| AAAATACTAACGCTTGAGTA+GGG | - | chr4.2:25792862-25792881 | MS.gene067553:CDS | 30.0% | |
| AAAATGTAAGCCTAGTATGA+AGG | + | chr4.2:25790218-25790237 | None:intergenic | 30.0% | |
| AACAGACAACAGCTATAATA+GGG | + | chr4.2:25789827-25789846 | None:intergenic | 30.0% | |
| AAGCAAGTCATTGTGTTAAA+TGG | - | chr4.2:25791622-25791641 | MS.gene067553:intron | 30.0% | |
| AATGCATGAAGCAATGATAT+AGG | - | chr4.2:25793367-25793386 | MS.gene067553:intron | 30.0% | |
| AGAAAAGGCAACATAATACA+TGG | + | chr4.2:25792495-25792514 | None:intergenic | 30.0% | |
| AGTCAAAATGTAAGAAACCA+TGG | + | chr4.2:25792752-25792771 | None:intergenic | 30.0% | |
| ATAGAGAAGATTGGATTTGA+TGG | - | chr4.2:25789261-25789280 | MS.gene067553:intron | 30.0% | |
| ATAGCCTATACAAGAATCAA+GGG | + | chr4.2:25791557-25791576 | None:intergenic | 30.0% | |
| ATTGAGACTAACTTTGTGAA+AGG | - | chr4.2:25793618-25793637 | MS.gene067553:CDS | 30.0% | |
| CACCGTAAAAATTGAATCTT+AGG | + | chr4.2:25791897-25791916 | None:intergenic | 30.0% | |
| CATACCTCATTTATTTATGG+TGG | - | chr4.2:25792666-25792685 | MS.gene067553:intron | 30.0% | |
| CCAAACTGAATTTATATTCC+AGG | + | chr4.2:25793125-25793144 | None:intergenic | 30.0% | |
| CCTGGAATATAAATTCAGTT+TGG | - | chr4.2:25793122-25793141 | MS.gene067553:intron | 30.0% | |
| CTATAATAGGGAAAAACACA+GGG | + | chr4.2:25789815-25789834 | None:intergenic | 30.0% | |
| CTGCAAAATAAGCAACTATT+TGG | + | chr4.2:25790281-25790300 | None:intergenic | 30.0% | |
| GATAGTAGAAAATTCACTAG+AGG | + | chr4.2:25792468-25792487 | None:intergenic | 30.0% | |
| GGAAAAGACAGTAAAAGATT+TGG | - | chr4.2:25789032-25789051 | MS.gene067553:CDS | 30.0% | |
| GGTATGAATCAGTTGAATTT+CGG | + | chr4.2:25793103-25793122 | None:intergenic | 30.0% | |
| TAACAGACAACAGCTATAAT+AGG | + | chr4.2:25789828-25789847 | None:intergenic | 30.0% | |
| TAGAGAAGATTGGATTTGAT+GGG | - | chr4.2:25789262-25789281 | MS.gene067553:intron | 30.0% | |
| TCCAACAAAACCAATAACAA+AGG | + | chr4.2:25791502-25791521 | None:intergenic | 30.0% | |
| TCTAACTACTCAAGCTATAT+TGG | - | chr4.2:25793915-25793934 | MS.gene067553:CDS | 30.0% | |
| TGCAATCAAGACATTTGAAA+AGG | + | chr4.2:25792050-25792069 | None:intergenic | 30.0% | |
| TGTTCCACCATAAATAAATG+AGG | + | chr4.2:25792673-25792692 | None:intergenic | 30.0% | |
| TTAGTCATTTGACTAGCAAT+GGG | + | chr4.2:25791097-25791116 | None:intergenic | 30.0% | |
| TTGACTGTACTTCATTGAAT+GGG | - | chr4.2:25792766-25792785 | MS.gene067553:intron | 30.0% | |
| TTTAGTCATTTGACTAGCAA+TGG | + | chr4.2:25791098-25791117 | None:intergenic | 30.0% | |
| TTTATATGGTGTAACTGTGT+GGG | - | chr4.2:25790515-25790534 | MS.gene067553:intron | 30.0% | |
| TTTGACTGTACTTCATTGAA+TGG | - | chr4.2:25792765-25792784 | MS.gene067553:intron | 30.0% | |
| ! | AAAAGCAAATGTTTTGCATG+TGG | + | chr4.2:25791232-25791251 | None:intergenic | 30.0% |
| ! | AAAAGTTCTTTTGCACTAGA+TGG | + | chr4.2:25791418-25791437 | None:intergenic | 30.0% |
| ! | AAATCCTATTTCTCTGAAGA+AGG | - | chr4.2:25789005-25789024 | MS.gene067553:CDS | 30.0% |
| ! | AATCCTATTTCTCTGAAGAA+GGG | - | chr4.2:25789006-25789025 | MS.gene067553:CDS | 30.0% |
| ! | ATTTTTCACATTCACAATGG+AGG | - | chr4.2:25791674-25791693 | MS.gene067553:intron | 30.0% |
| ! | GGCTTACATTTTTCTATCTT+TGG | - | chr4.2:25790226-25790245 | MS.gene067553:intron | 30.0% |
| ! | GTTTGACAATGCTAAAGTTT+TGG | - | chr4.2:25789918-25789937 | MS.gene067553:intron | 30.0% |
| ! | TAGTTTTCATAAGCCATCTT+GGG | + | chr4.2:25791841-25791860 | None:intergenic | 30.0% |
| ! | TATGAAGATCTTTTGAATGC+TGG | - | chr4.2:25793826-25793845 | MS.gene067553:intron | 30.0% |
| ! | TATTTCTGTACAGATTGACA+GGG | - | chr4.2:25789846-25789865 | MS.gene067553:intron | 30.0% |
| ! | TTTTATATGGTGTAACTGTG+TGG | - | chr4.2:25790514-25790533 | MS.gene067553:intron | 30.0% |
| !! | AAGAAGCAGTTGATAAGTAA+AGG | + | chr4.2:25791001-25791020 | None:intergenic | 30.0% |
| !! | AGAAGCAGTTGATAAGTAAA+GGG | + | chr4.2:25791000-25791019 | None:intergenic | 30.0% |
| !! | CAATGCTAAAGTTTTGGTAA+CGG | - | chr4.2:25789924-25789943 | MS.gene067553:intron | 30.0% |
| !! | GTCTTACTTTGCTATTTCTT+TGG | - | chr4.2:25792788-25792807 | MS.gene067553:CDS | 30.0% |
| !! | TTATTTCTGTACAGATTGAC+AGG | - | chr4.2:25789845-25789864 | MS.gene067553:intron | 30.0% |
| !!! | AAACTCTCCCAATTTTTTCA+TGG | + | chr4.2:25792520-25792539 | None:intergenic | 30.0% |
| !!! | ACATTTTTAGTTGGACAGTA+TGG | - | chr4.2:25790343-25790362 | MS.gene067553:intron | 30.0% |
| !!! | TTGTTATTGGTTTTGTTGGA+TGG | - | chr4.2:25791502-25791521 | MS.gene067553:intron | 30.0% |
| AAAAATATTCAGACTCGGAG+AGG | + | chr4.2:25792428-25792447 | None:intergenic | 35.0% | |
| AAAATATTCAGACTCGGAGA+GGG | + | chr4.2:25792427-25792446 | None:intergenic | 35.0% | |
| AAACAACTGCAGATATGTTG+AGG | + | chr4.2:25792902-25792921 | None:intergenic | 35.0% | |
| AAACACTAAGGCTGAAATTC+AGG | - | chr4.2:25790804-25790823 | MS.gene067553:intron | 35.0% | |
| AAATACTAACGCTTGAGTAG+GGG | - | chr4.2:25792863-25792882 | MS.gene067553:CDS | 35.0% | |
| AAATCAATTGCAGCTAATGC+TGG | - | chr4.2:25793727-25793746 | MS.gene067553:intron | 35.0% | |
| AAGTATTCCTGTTGAAGGAA+GGG | - | chr4.2:25789074-25789093 | MS.gene067553:CDS | 35.0% | |
| ACAAGATATTGCGCTAATGA+CGG | - | chr4.2:25790143-25790162 | MS.gene067553:intron | 35.0% | |
| ACATTCACAATGGAGGAATT+TGG | - | chr4.2:25791681-25791700 | MS.gene067553:intron | 35.0% | |
| AGAACATTTGACTGGAGAAT+CGG | - | chr4.2:25793781-25793800 | MS.gene067553:intron | 35.0% | |
| AGAAGACTAGAACATTTGAC+TGG | - | chr4.2:25793773-25793792 | MS.gene067553:intron | 35.0% | |
| AGAGAAGATTGGATTTGATG+GGG | - | chr4.2:25789263-25789282 | MS.gene067553:intron | 35.0% | |
| AGTCTCAATCCTACAAGAAA+AGG | + | chr4.2:25793607-25793626 | None:intergenic | 35.0% | |
| ATCTTCCATGGAGTTCTTTA+TGG | + | chr4.2:25792332-25792351 | None:intergenic | 35.0% | |
| ATTCCCTTCTTCAGAGAAAT+AGG | + | chr4.2:25789012-25789031 | None:intergenic | 35.0% | |
| ATTTAATAAACCCCCCAAGA+TGG | - | chr4.2:25791825-25791844 | MS.gene067553:intron | 35.0% | |
| ATTTCTGTACAGATTGACAG+GGG | - | chr4.2:25789847-25789866 | MS.gene067553:intron | 35.0% | |
| CAAAGAAATAGTTCCTTTGC+TGG | - | chr4.2:25789966-25789985 | MS.gene067553:intron | 35.0% | |
| CATAATAAACGGGCATAACA+TGG | - | chr4.2:25789549-25789568 | MS.gene067553:intron | 35.0% | |
| CATAGCCTATACAAGAATCA+AGG | + | chr4.2:25791558-25791577 | None:intergenic | 35.0% | |
| CATTTACCAATTGTGTAGGT+AGG | - | chr4.2:25792169-25792188 | MS.gene067553:CDS | 35.0% | |
| CCTACTGCATTTGATAAACT+CGG | - | chr4.2:25790173-25790192 | MS.gene067553:intron | 35.0% | |
| CCTGTGATATTAAAGTCAAC+AGG | + | chr4.2:25790667-25790686 | None:intergenic | 35.0% | |
| GAAAATACTAACGCTTGAGT+AGG | - | chr4.2:25792861-25792880 | MS.gene067553:CDS | 35.0% | |
| GAAGATCTAGATGAGCAAAT+TGG | - | chr4.2:25792346-25792365 | MS.gene067553:intron | 35.0% | |
| GATGCATTTACCAATTGTGT+AGG | - | chr4.2:25792165-25792184 | MS.gene067553:CDS | 35.0% | |
| GCAAATAGGCCAATAAATGT+TGG | + | chr4.2:25793507-25793526 | None:intergenic | 35.0% | |
| GCTATAATAGGGAAAAACAC+AGG | + | chr4.2:25789816-25789835 | None:intergenic | 35.0% | |
| GTATCCCTTGATTCTTGTAT+AGG | - | chr4.2:25791550-25791569 | MS.gene067553:intron | 35.0% | |
| GTCATTGTGTTAAATGGAAC+TGG | - | chr4.2:25791628-25791647 | MS.gene067553:intron | 35.0% | |
| GTGATATTAAAGTCAACAGG+AGG | + | chr4.2:25790664-25790683 | None:intergenic | 35.0% | |
| GTGTGAATCTATTCTATCGA+AGG | + | chr4.2:25793036-25793055 | None:intergenic | 35.0% | |
| TCAATCCTACAAGAAAAGGA+GGG | + | chr4.2:25793603-25793622 | None:intergenic | 35.0% | |
| TGAAAAACTCAGACAAGCAT+TGG | + | chr4.2:25789126-25789145 | None:intergenic | 35.0% | |
| TGAATTTCAGCCTTAGTGTT+TGG | + | chr4.2:25790805-25790824 | None:intergenic | 35.0% | |
| TGACTTTAATATCACAGGTG+CGG | - | chr4.2:25790669-25790688 | MS.gene067553:CDS | 35.0% | |
| TGCTTCATGCATTAAAACCA+CGG | + | chr4.2:25793360-25793379 | None:intergenic | 35.0% | |
| TTATATGGTGTAACTGTGTG+GGG | - | chr4.2:25790516-25790535 | MS.gene067553:intron | 35.0% | |
| TTATCGTTTGATCCATTTCC+TGG | - | chr4.2:25793229-25793248 | MS.gene067553:intron | 35.0% | |
| TTGTGTTAAATGGAACTGGA+TGG | - | chr4.2:25791632-25791651 | MS.gene067553:intron | 35.0% | |
| ! | AATTCAACTGATTCATACCC+TGG | - | chr4.2:25793104-25793123 | MS.gene067553:intron | 35.0% |
| ! | ACTTTTGCTGCCATAAATGA+GGG | - | chr4.2:25792253-25792272 | MS.gene067553:intron | 35.0% |
| ! | AGTTTTCATAAGCCATCTTG+GGG | + | chr4.2:25791840-25791859 | None:intergenic | 35.0% |
| ! | ATTTGCTGATCCAAACACTA+AGG | - | chr4.2:25790792-25790811 | MS.gene067553:intron | 35.0% |
| ! | CATTTATTGGCCTATTTGCT+AGG | - | chr4.2:25793508-25793527 | MS.gene067553:intron | 35.0% |
| ! | GATTTTCTCTGTGGAGATTT+GGG | - | chr4.2:25790691-25790710 | MS.gene067553:CDS | 35.0% |
| ! | GTAGTTTTCATAAGCCATCT+TGG | + | chr4.2:25791842-25791861 | None:intergenic | 35.0% |
| ! | GTGCAAAAGAACTTTTGTTG+TGG | - | chr4.2:25791422-25791441 | MS.gene067553:intron | 35.0% |
| ! | GTTCTGAGTTCAATGACATT+GGG | - | chr4.2:25791165-25791184 | MS.gene067553:intron | 35.0% |
| ! | TACTTTTGCTGCCATAAATG+AGG | - | chr4.2:25792252-25792271 | MS.gene067553:intron | 35.0% |
| ! | TATTTCTCTGAAGAAGGGAA+TGG | - | chr4.2:25789011-25789030 | MS.gene067553:CDS | 35.0% |
| ! | TTAGCTGCAATTGATTTAGC+AGG | + | chr4.2:25793724-25793743 | None:intergenic | 35.0% |
| !! | AAGAGAAGTATTCCTGTTGA+AGG | - | chr4.2:25789069-25789088 | MS.gene067553:CDS | 35.0% |
| !! | AGTTGATAAGTAAAGGGTCA+AGG | + | chr4.2:25790994-25791013 | None:intergenic | 35.0% |
| !! | CCTGTTGACTTTAATATCAC+AGG | - | chr4.2:25790664-25790683 | MS.gene067553:CDS | 35.0% |
| !! | TAACTGTTGGCCTTTGTTAT+TGG | - | chr4.2:25791489-25791508 | MS.gene067553:intron | 35.0% |
| !! | TTAAAACCACGGTATTGACA+CGG | + | chr4.2:25793349-25793368 | None:intergenic | 35.0% |
| !!! | GCCTTTGTTATTGGTTTTGT+TGG | - | chr4.2:25791498-25791517 | MS.gene067553:intron | 35.0% |
| !!! | GTTTTAGTTTTGGTCCCTAA+TGG | - | chr4.2:25789466-25789485 | MS.gene067553:intron | 35.0% |
| !!! | TGGTCATTTTTCTCTCCTAA+GGG | + | chr4.2:25793487-25793506 | None:intergenic | 35.0% |
| !!! | TTGGTCATTTTTCTCTCCTA+AGG | + | chr4.2:25793488-25793507 | None:intergenic | 35.0% |
| AAATATTCAGACTCGGAGAG+GGG | + | chr4.2:25792426-25792445 | None:intergenic | 40.0% | |
| AACAAAGAGGGAACAGCTTA+TGG | + | chr4.2:25791865-25791884 | None:intergenic | 40.0% | |
| AACACATTTCCAGCTTTGCT+TGG | - | chr4.2:25790634-25790653 | MS.gene067553:CDS | 40.0% | |
| AACTTGAGGATAGAAAGCTG+AGG | - | chr4.2:25792209-25792228 | MS.gene067553:CDS | 40.0% | |
| ACAAAGAGGGAACAGCTTAT+GGG | + | chr4.2:25791864-25791883 | None:intergenic | 40.0% | |
| ACATACATGTCCTGTCATCA+TGG | - | chr4.2:25790949-25790968 | MS.gene067553:intron | 40.0% | |
| ACCTCTGTGGTAATTGAAGA+AGG | - | chr4.2:25789318-25789337 | MS.gene067553:intron | 40.0% | |
| AGAAACCACTGAACTATCCA+CGG | - | chr4.2:25793272-25793291 | MS.gene067553:intron | 40.0% | |
| AGCATTGTCAAACTCCACAA+TGG | + | chr4.2:25789911-25789930 | None:intergenic | 40.0% | |
| AGGAACAAGTCCCTCATTTA+TGG | + | chr4.2:25792266-25792285 | None:intergenic | 40.0% | |
| AGTTGTGCATGAATCATTGC+AGG | - | chr4.2:25793687-25793706 | MS.gene067553:CDS | 40.0% | |
| ATACGATTCGTTGCAAGACA+TGG | + | chr4.2:25790587-25790606 | None:intergenic | 40.0% | |
| ATATGATCCCTTCCTTCAAC+AGG | + | chr4.2:25789084-25789103 | None:intergenic | 40.0% | |
| ATCTTCATATGTGCCAGTCA+TGG | + | chr4.2:25793815-25793834 | None:intergenic | 40.0% | |
| ATGTCTTGCAACGAATCGTA+TGG | - | chr4.2:25790586-25790605 | MS.gene067553:CDS | 40.0% | |
| CAACCAGGAAAAATCCATTG+TGG | - | chr4.2:25789894-25789913 | MS.gene067553:intron | 40.0% | |
| CAAGATATTGCGCTAATGAC+GGG | - | chr4.2:25790144-25790163 | MS.gene067553:intron | 40.0% | |
| CAAGATTACAATCCACCTAG+CGG | - | chr4.2:25790426-25790445 | MS.gene067553:intron | 40.0% | |
| CAATCCTACAAGAAAAGGAG+GGG | + | chr4.2:25793602-25793621 | None:intergenic | 40.0% | |
| CATACATGTCCTGTCATCAT+GGG | - | chr4.2:25790950-25790969 | MS.gene067553:intron | 40.0% | |
| CATGGGAACAAAGACATTTG+AGG | + | chr4.2:25790569-25790588 | None:intergenic | 40.0% | |
| CCGAGTTTATCAAATGCAGT+AGG | + | chr4.2:25790176-25790195 | None:intergenic | 40.0% | |
| CCTCTGTGGTAATTGAAGAA+GGG | - | chr4.2:25789319-25789338 | MS.gene067553:intron | 40.0% | |
| CGTCAGTTGACTGTTAATAG+AGG | - | chr4.2:25790461-25790480 | MS.gene067553:intron | 40.0% | |
| CTCAATCCTACAAGAAAAGG+AGG | + | chr4.2:25793604-25793623 | None:intergenic | 40.0% | |
| CTTATTCCCTAAAGTAGCAG+GGG | + | chr4.2:25792959-25792978 | None:intergenic | 40.0% | |
| GAAGGAAGGGATCATATCAA+AGG | - | chr4.2:25789087-25789106 | MS.gene067553:CDS | 40.0% | |
| GATTTGGGTCTTACACTTGA+AGG | - | chr4.2:25790706-25790725 | MS.gene067553:CDS | 40.0% | |
| GCTGAAGCTATAGAGAAGAT+TGG | - | chr4.2:25789252-25789271 | MS.gene067553:intron | 40.0% | |
| GCTTATTCCCTAAAGTAGCA+GGG | + | chr4.2:25792960-25792979 | None:intergenic | 40.0% | |
| GGACATGATCATTCAGATCT+GGG | + | chr4.2:25789794-25789813 | None:intergenic | 40.0% | |
| GGTAATTGAAGAAGGGATGA+AGG | - | chr4.2:25789326-25789345 | MS.gene067553:intron | 40.0% | |
| TACGATTCGTTGCAAGACAT+GGG | + | chr4.2:25790586-25790605 | None:intergenic | 40.0% | |
| TATATGGTGTAACTGTGTGG+GGG | - | chr4.2:25790517-25790536 | MS.gene067553:intron | 40.0% | |
| TCCTCCGCAATAATTAAGAG+CGG | + | chr4.2:25790015-25790034 | None:intergenic | 40.0% | |
| TGCTCCGCTCTTAATTATTG+CGG | - | chr4.2:25790008-25790027 | MS.gene067553:intron | 40.0% | |
| TGGTTTCTCCATCTACAATG+TGG | + | chr4.2:25793260-25793279 | None:intergenic | 40.0% | |
| TTGCTCATCTAGATCTTCCA+TGG | + | chr4.2:25792344-25792363 | None:intergenic | 40.0% | |
| ! | ATAAATGAGGGACTTGTTCC+TGG | - | chr4.2:25792265-25792284 | MS.gene067553:intron | 40.0% |
| ! | ATTTTTCTCTCCTAAGGGAC+AGG | + | chr4.2:25793482-25793501 | None:intergenic | 40.0% |
| ! | GAAGTATTCCTGTTGAAGGA+AGG | - | chr4.2:25789073-25789092 | MS.gene067553:CDS | 40.0% |
| ! | GGATTTTCTCTGTGGAGATT+TGG | - | chr4.2:25790690-25790709 | MS.gene067553:CDS | 40.0% |
| ! | GTTTTCATAAGCCATCTTGG+GGG | + | chr4.2:25791839-25791858 | None:intergenic | 40.0% |
| ! | TCTTTTGCACTAGATGGAGT+TGG | + | chr4.2:25791412-25791431 | None:intergenic | 40.0% |
| ! | TTTTCATAAGCCATCTTGGG+GGG | + | chr4.2:25791838-25791857 | None:intergenic | 40.0% |
| ! | TTTTCCCCTCCTTTTCTTGT+AGG | - | chr4.2:25793595-25793614 | MS.gene067553:CDS | 40.0% |
| ! | TTTTTCTCTCCTAAGGGACA+GGG | + | chr4.2:25793481-25793500 | None:intergenic | 40.0% |
| !! | ACTCCACAATGGATTTTTCC+TGG | + | chr4.2:25789900-25789919 | None:intergenic | 40.0% |
| !! | AGGATGATGGGAAACAAAGA+GGG | + | chr4.2:25791877-25791896 | None:intergenic | 40.0% |
| !! | ATTCTTCCCCTGCTACTTTA+GGG | - | chr4.2:25792950-25792969 | MS.gene067553:CDS | 40.0% |
| !! | CACAATGGATTTTTCCTGGT+TGG | + | chr4.2:25789896-25789915 | None:intergenic | 40.0% |
| !! | GCAAATTGGTGCTGATATTG+TGG | - | chr4.2:25792360-25792379 | MS.gene067553:intron | 40.0% |
| !! | GCTTGAGATTCTAGAGTACT+TGG | + | chr4.2:25793180-25793199 | None:intergenic | 40.0% |
| !! | GGTTCTGAGTTCAATGACAT+TGG | - | chr4.2:25791164-25791183 | MS.gene067553:intron | 40.0% |
| !! | TAAAACCACGGTATTGACAC+GGG | + | chr4.2:25793348-25793367 | None:intergenic | 40.0% |
| !! | TAGGATGATGGGAAACAAAG+AGG | + | chr4.2:25791878-25791897 | None:intergenic | 40.0% |
| !! | TATTCTTCCCCTGCTACTTT+AGG | - | chr4.2:25792949-25792968 | MS.gene067553:CDS | 40.0% |
| !! | TGCATAGCTTTTTCCAGCAA+AGG | + | chr4.2:25789982-25790001 | None:intergenic | 40.0% |
| AACATTCTTGCGTGAGGGTT+TGG | - | chr4.2:25791269-25791288 | MS.gene067553:intron | 45.0% | |
| AAGCCTAGTATGAAGGAAGC+TGG | + | chr4.2:25790211-25790230 | None:intergenic | 45.0% | |
| AATGTGGACCATCCAGGAAA+TGG | + | chr4.2:25793244-25793263 | None:intergenic | 45.0% | |
| ACACACTGAGCTAGAACTTG+AGG | - | chr4.2:25792195-25792214 | MS.gene067553:CDS | 45.0% | |
| ACCTGCCATAAAGAACTCCA+TGG | - | chr4.2:25792324-25792343 | MS.gene067553:intron | 45.0% | |
| ACGTACTGAAACAATCCGCT+AGG | + | chr4.2:25790444-25790463 | None:intergenic | 45.0% | |
| ACTAGCAACATTCTTGCGTG+AGG | - | chr4.2:25791263-25791282 | MS.gene067553:intron | 45.0% | |
| AGAATTGCGAAACTCACTGG+CGG | - | chr4.2:25790898-25790917 | MS.gene067553:intron | 45.0% | |
| AGATGATGAGGATGACTCGA+TGG | + | chr4.2:25789295-25789314 | None:intergenic | 45.0% | |
| AGCAATGGGACATCCTTCTT+CGG | + | chr4.2:25791083-25791102 | None:intergenic | 45.0% | |
| AGTTAGAACCACGCTAGCAA+TGG | + | chr4.2:25793902-25793921 | None:intergenic | 45.0% | |
| ATCGGATACAATGCCATGAC+TGG | - | chr4.2:25793799-25793818 | MS.gene067553:intron | 45.0% | |
| ATCTACAATGTGGACCATCC+AGG | + | chr4.2:25793250-25793269 | None:intergenic | 45.0% | |
| ATTCAACCAAGGACCGAAGA+AGG | - | chr4.2:25791067-25791086 | MS.gene067553:intron | 45.0% | |
| CACAGAGGTTTCAGATGATG+AGG | + | chr4.2:25789307-25789326 | None:intergenic | 45.0% | |
| CAGGTATCAAGTCCAAAAGG+TGG | + | chr4.2:25792309-25792328 | None:intergenic | 45.0% | |
| CCCTTCTTCAATTACCACAG+AGG | + | chr4.2:25789322-25789341 | None:intergenic | 45.0% | |
| CGTTTGATCCATTTCCTGGA+TGG | - | chr4.2:25793233-25793252 | MS.gene067553:intron | 45.0% | |
| CTAGCAACATTCTTGCGTGA+GGG | - | chr4.2:25791264-25791283 | MS.gene067553:intron | 45.0% | |
| CTTTCATTGCAGTACCAAGC+TGG | + | chr4.2:25790744-25790763 | None:intergenic | 45.0% | |
| GAGAGAATTGCGAAACTCAC+TGG | - | chr4.2:25790895-25790914 | MS.gene067553:intron | 45.0% | |
| GCAAACTTTAACATGGACCG+TGG | + | chr4.2:25793292-25793311 | None:intergenic | 45.0% | |
| GCTGGAAATGACGAGTATGT+TGG | - | chr4.2:25789219-25789238 | MS.gene067553:intron | 45.0% | |
| GCTGTAAAATGTCCAGGACT+CGG | - | chr4.2:25790099-25790118 | MS.gene067553:intron | 45.0% | |
| GGATAGAAAGCTGAGGATTG+AGG | - | chr4.2:25792216-25792235 | MS.gene067553:CDS | 45.0% | |
| GGCTTATTCCCTAAAGTAGC+AGG | + | chr4.2:25792961-25792980 | None:intergenic | 45.0% | |
| GGGACATGATCATTCAGATC+TGG | + | chr4.2:25789795-25789814 | None:intergenic | 45.0% | |
| GGGTCAAGGTGATCAGAATA+AGG | + | chr4.2:25790980-25790999 | None:intergenic | 45.0% | |
| GTCATTTCCAGCAGAAATCG+AGG | + | chr4.2:25789211-25789230 | None:intergenic | 45.0% | |
| GTCCAAAAGGTGGACATATG+TGG | + | chr4.2:25792299-25792318 | None:intergenic | 45.0% | |
| GTTGCAGCTGTAAAATGTCC+AGG | - | chr4.2:25790093-25790112 | MS.gene067553:intron | 45.0% | |
| TAACTCAGATGCAAACACGC+AGG | + | chr4.2:25793445-25793464 | None:intergenic | 45.0% | |
| TACTGAAACAATCCGCTAGG+TGG | + | chr4.2:25790441-25790460 | None:intergenic | 45.0% | |
| TCCATGGAGTTCTTTATGGC+AGG | + | chr4.2:25792328-25792347 | None:intergenic | 45.0% | |
| TCCGCTCTTAATTATTGCGG+AGG | - | chr4.2:25790011-25790030 | MS.gene067553:intron | 45.0% | |
| TCCTTACTTCATCACCAACC+AGG | - | chr4.2:25789879-25789898 | MS.gene067553:intron | 45.0% | |
| TGGATGGTCCACATTGTAGA+TGG | - | chr4.2:25793249-25793268 | MS.gene067553:intron | 45.0% | |
| TGGCAGGTATCAAGTCCAAA+AGG | + | chr4.2:25792312-25792331 | None:intergenic | 45.0% | |
| TGGCGGTATAGCCGTTATAA+AGG | - | chr4.2:25790915-25790934 | MS.gene067553:intron | 45.0% | |
| TGTGCACCTACCTACACAAT+TGG | + | chr4.2:25792178-25792197 | None:intergenic | 45.0% | |
| TTGGACAGTATGGCTGTCTT+GGG | - | chr4.2:25790353-25790372 | MS.gene067553:intron | 45.0% | |
| ! | CTCATCATCTGAAACCTCTG+TGG | - | chr4.2:25789305-25789324 | MS.gene067553:intron | 45.0% |
| ! | TCTCTGAGAGCTTTCTCGAA+TGG | + | chr4.2:25790879-25790898 | None:intergenic | 45.0% |
| ! | TGCCACATATGTCCACCTTT+TGG | - | chr4.2:25792294-25792313 | MS.gene067553:intron | 45.0% |
| !! | AAAACCACGGTATTGACACG+GGG | + | chr4.2:25793347-25793366 | None:intergenic | 45.0% |
| !! | CGCTAGGTGGATTGTAATCT+TGG | + | chr4.2:25790428-25790447 | None:intergenic | 45.0% |
| !! | TCCTGGTTGGTGATGAAGTA+AGG | + | chr4.2:25789883-25789902 | None:intergenic | 45.0% |
| !! | AACTATTATTAAAATTATTA+GGG | + | chr4.2:25789747-25789766 | None:intergenic | 5.0% |
| !!! | AAAAAAAATTATTTTGTTTT+TGG | + | chr4.2:25789641-25789660 | None:intergenic | 5.0% |
| AAATGTCCAGGACTCGGAGA+TGG | - | chr4.2:25790105-25790124 | MS.gene067553:intron | 50.0% | |
| AGGGACAGGGTTAGGCTATA+TGG | + | chr4.2:25793468-25793487 | None:intergenic | 50.0% | |
| ATAGCCTAACCCTGTCCCTT+AGG | - | chr4.2:25793469-25793488 | MS.gene067553:intron | 50.0% | |
| ATGGACCGTGGATAGTTCAG+TGG | + | chr4.2:25793280-25793299 | None:intergenic | 50.0% | |
| CTGCCAGCTTCCTTCATACT+AGG | - | chr4.2:25790205-25790224 | MS.gene067553:intron | 50.0% | |
| CTTTGATTACAGCTCCCCTC+TGG | - | chr4.2:25793396-25793415 | MS.gene067553:intron | 50.0% | |
| GCACATCTTGCAACTCGACT+AGG | + | chr4.2:25793862-25793881 | None:intergenic | 50.0% | |
| GCAGCTAATGCTGGAGTTGA+TGG | - | chr4.2:25793736-25793755 | MS.gene067553:intron | 50.0% | |
| GGTACAACATCAGACCAGCT+TGG | - | chr4.2:25790727-25790746 | MS.gene067553:CDS | 50.0% | |
| GTTGGACAGTATGGCTGTCT+TGG | - | chr4.2:25790352-25790371 | MS.gene067553:intron | 50.0% | |
| TAAGGACAGCCCATGATGAC+AGG | + | chr4.2:25790962-25790981 | None:intergenic | 50.0% | |
| TTCTTTCCATCTCCGAGTCC+TGG | + | chr4.2:25790114-25790133 | None:intergenic | 50.0% | |
| ! | AATGAGGGACTTGTTCCTGG+AGG | - | chr4.2:25792268-25792287 | MS.gene067553:intron | 50.0% |
| ! | ACAGGTGCGGATTTTCTCTG+TGG | - | chr4.2:25790682-25790701 | MS.gene067553:CDS | 50.0% |
| ! | ATGAGGGACTTGTTCCTGGA+GGG | - | chr4.2:25792269-25792288 | MS.gene067553:intron | 50.0% |
| !! | AAACCACGGTATTGACACGG+GGG | + | chr4.2:25793346-25793365 | None:intergenic | 50.0% |
| !! | TGGTGCTGATATTGTGGCGA+AGG | - | chr4.2:25792366-25792385 | MS.gene067553:intron | 50.0% |
| ACATACCCCTCAGTTGCCAG+AGG | + | chr4.2:25793415-25793434 | None:intergenic | 55.0% | |
| AGGCTACAGCTGCACAAGGT+GGG | + | chr4.2:25789191-25789210 | None:intergenic | 55.0% | |
| ATACCCCTCAGTTGCCAGAG+GGG | + | chr4.2:25793413-25793432 | None:intergenic | 55.0% | |
| ATCGAGGCTACAGCTGCACA+AGG | + | chr4.2:25789195-25789214 | None:intergenic | 55.0% | |
| CATACCCCTCAGTTGCCAGA+GGG | + | chr4.2:25793414-25793433 | None:intergenic | 55.0% | |
| CTCTCCTAAGGGACAGGGTT+AGG | + | chr4.2:25793476-25793495 | None:intergenic | 55.0% | |
| GCTGTAGCCTCGATTTCTGC+TGG | - | chr4.2:25789201-25789220 | MS.gene067553:CDS | 55.0% | |
| GGACATCCTTCTTCGGTCCT+TGG | + | chr4.2:25791076-25791095 | None:intergenic | 55.0% | |
| GGACGTCACTGCACAAGTGT+TGG | - | chr4.2:25790032-25790051 | MS.gene067553:intron | 55.0% | |
| GGAGGTCAACCAAGCAAAGC+TGG | + | chr4.2:25790646-25790665 | None:intergenic | 55.0% | |
| TGCAGTCTCCATTGCTAGCG+TGG | - | chr4.2:25793891-25793910 | MS.gene067553:CDS | 55.0% | |
| ! | TGAGGGACTTGTTCCTGGAG+GGG | - | chr4.2:25792270-25792289 | MS.gene067553:intron | 55.0% |
| ACATATGTGGCACCCCCTCC+AGG | + | chr4.2:25792286-25792305 | None:intergenic | 60.0% | |
| AGCTCCCCTCTGGCAACTGA+GGG | - | chr4.2:25793406-25793425 | MS.gene067553:intron | 60.0% | |
| CACGGGGGAGGAAGGATGAA+TGG | + | chr4.2:25793331-25793350 | None:intergenic | 60.0% | |
| GAGGCTACAGCTGCACAAGG+TGG | + | chr4.2:25789192-25789211 | None:intergenic | 60.0% | |
| GGCTACAGCTGCACAAGGTG+GGG | + | chr4.2:25789190-25789209 | None:intergenic | 60.0% | |
| ! | GAGGGACTTGTTCCTGGAGG+GGG | - | chr4.2:25792271-25792290 | MS.gene067553:intron | 60.0% |
| !! | GGTATTGACACGGGGGAGGA+AGG | + | chr4.2:25793339-25793358 | None:intergenic | 60.0% |
| CAGCTCCCCTCTGGCAACTG+AGG | - | chr4.2:25793405-25793424 | MS.gene067553:intron | 65.0% | |
| CCTCCCCCGTGTCAATACCG+TGG | - | chr4.2:25793340-25793359 | MS.gene067553:intron | 65.0% | |
| GCTCCCCTCTGGCAACTGAG+GGG | - | chr4.2:25793407-25793426 | MS.gene067553:intron | 65.0% | |
| !! | CCACGGTATTGACACGGGGG+AGG | + | chr4.2:25793343-25793362 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 25788991 | 25793945 | 25788991 | ID=MS.gene067553 |
| chr4.2 | mRNA | 25788991 | 25793945 | 25788991 | ID=MS.gene067553.t1;Parent=MS.gene067553 |
| chr4.2 | exon | 25793828 | 25793945 | 25793828 | ID=MS.gene067553.t1.exon1;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25793828 | 25793945 | 25793828 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| chr4.2 | exon | 25793589 | 25793734 | 25793589 | ID=MS.gene067553.t1.exon2;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25793589 | 25793734 | 25793589 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| chr4.2 | exon | 25792771 | 25793077 | 25792771 | ID=MS.gene067553.t1.exon3;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25792771 | 25793077 | 25792771 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| chr4.2 | exon | 25792000 | 25792250 | 25792000 | ID=MS.gene067553.t1.exon4;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25792000 | 25792250 | 25792000 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| chr4.2 | exon | 25790549 | 25790749 | 25790549 | ID=MS.gene067553.t1.exon5;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25790549 | 25790749 | 25790549 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| chr4.2 | exon | 25788991 | 25789227 | 25788991 | ID=MS.gene067553.t1.exon6;Parent=MS.gene067553.t1 |
| chr4.2 | CDS | 25788991 | 25789227 | 25788991 | ID=cds.MS.gene067553.t1;Parent=MS.gene067553.t1 |
| Gene Sequence |
| Protein sequence |
