Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071301.t1 | GAU17568.1 | 64.1 | 334 | 105 | 5 | 1 | 330 | 404 | 726 | 1.40E-106 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071301.t1 | Q9FPT1 | 45.4 | 130 | 68 | 3 | 10 | 138 | 56 | 183 | 4.4e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071301.t1 | A0A392MFG0 | 65.3 | 334 | 101 | 5 | 1 | 330 | 4 | 326 | 1.5e-110 | 409.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene071301 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene071301 | 0.802446 | 5.59E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene071301 | 0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene071301 | 0.819927 | 8.98E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene071301 | 0.812462 | 4.19E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene071301 | 0.811418 | 7.07E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene071301 | -0.816715 | 4.79E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene071301 | 0.806398 | 8.39E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene071301 | 0.820792 | 5.69E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene071301 | 0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene071301 | 0.817177 | 3.77E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene071301 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene071301 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene071301 | 0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene071301 | -0.801154 | 1.03E-48 | -1.69E-46 |
| MS.gene056082 | MS.gene071301 | 0.814667 | 1.37E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene071301 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene057287 | MS.gene071301 | 0.817089 | 3.95E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene071301 | 0.803493 | 3.40E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene071301 | 0.8021 | 6.58E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene071301 | 0.818031 | 2.42E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene071301 | 0.822408 | 2.41E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene071301 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene071301 | 0.808502 | 3.00E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071301.t1 | MTR_7g107200 | 46.133 | 375 | 156 | 6 | 1 | 329 | 1 | 375 | 5.45e-108 | 320 |
| MS.gene071301.t1 | MTR_1g042160 | 49.401 | 334 | 137 | 8 | 1 | 328 | 1 | 308 | 3.71e-99 | 295 |
| MS.gene071301.t1 | MTR_7g107160 | 53.687 | 339 | 118 | 12 | 9 | 330 | 129 | 445 | 6.87e-99 | 299 |
| MS.gene071301.t1 | MTR_7g107160 | 48.837 | 129 | 46 | 3 | 66 | 174 | 1 | 129 | 8.86e-30 | 118 |
| MS.gene071301.t1 | MTR_8g011730 | 37.079 | 356 | 174 | 11 | 9 | 329 | 13 | 353 | 1.82e-62 | 203 |
| MS.gene071301.t1 | MTR_7g107170 | 54.037 | 161 | 66 | 1 | 168 | 328 | 111 | 263 | 3.28e-49 | 166 |
| MS.gene071301.t1 | MTR_7g107170 | 73.563 | 87 | 23 | 0 | 233 | 319 | 1 | 87 | 9.82e-33 | 122 |
| MS.gene071301.t1 | MTR_2g034780 | 36.747 | 166 | 102 | 1 | 158 | 323 | 99 | 261 | 7.20e-29 | 112 |
| MS.gene071301.t1 | MTR_3g079840 | 40.141 | 142 | 79 | 4 | 1 | 138 | 45 | 184 | 3.58e-25 | 107 |
| MS.gene071301.t1 | MTR_3g079840 | 40.141 | 142 | 79 | 4 | 1 | 138 | 44 | 183 | 3.61e-25 | 107 |
| MS.gene071301.t1 | MTR_5g086700 | 38.235 | 136 | 81 | 3 | 4 | 138 | 55 | 188 | 7.23e-25 | 106 |
| MS.gene071301.t1 | MTR_5g086700 | 38.235 | 136 | 81 | 3 | 4 | 138 | 55 | 188 | 7.29e-25 | 106 |
| MS.gene071301.t1 | MTR_1g041240 | 41.221 | 131 | 73 | 3 | 10 | 139 | 58 | 185 | 9.02e-24 | 102 |
| MS.gene071301.t1 | MTR_1g041240 | 41.221 | 131 | 73 | 3 | 10 | 139 | 59 | 186 | 9.37e-24 | 102 |
| MS.gene071301.t1 | MTR_1g041240 | 41.221 | 131 | 73 | 3 | 10 | 139 | 57 | 184 | 9.54e-24 | 102 |
| MS.gene071301.t1 | MTR_5g091450 | 37.302 | 126 | 77 | 2 | 10 | 134 | 33 | 157 | 2.03e-22 | 98.6 |
| MS.gene071301.t1 | MTR_5g091180 | 34.899 | 149 | 90 | 4 | 1 | 145 | 34 | 179 | 4.32e-20 | 91.7 |
| MS.gene071301.t1 | MTR_5g091550 | 33.858 | 127 | 81 | 3 | 9 | 134 | 18 | 142 | 9.34e-15 | 75.5 |
| MS.gene071301.t1 | MTR_5g091550 | 33.858 | 127 | 81 | 3 | 9 | 134 | 18 | 142 | 1.04e-14 | 75.1 |
| MS.gene071301.t1 | MTR_3g106700 | 34.043 | 141 | 83 | 3 | 10 | 140 | 406 | 546 | 6.93e-13 | 70.1 |
| MS.gene071301.t1 | MTR_1g073800 | 33.588 | 131 | 82 | 5 | 10 | 138 | 49 | 176 | 8.08e-13 | 69.3 |
| MS.gene071301.t1 | MTR_4g123750 | 25.652 | 230 | 137 | 7 | 5 | 222 | 14 | 221 | 6.26e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071301.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 43 | 182 | 9.71e-26 | 108 |
| MS.gene071301.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 44 | 183 | 9.71e-26 | 108 |
| MS.gene071301.t1 | AT5G06600 | 43.662 | 142 | 74 | 4 | 1 | 138 | 44 | 183 | 1.12e-25 | 108 |
| MS.gene071301.t1 | AT3G11910 | 44.615 | 130 | 69 | 3 | 10 | 138 | 54 | 181 | 7.35e-25 | 106 |
| MS.gene071301.t1 | AT3G11910 | 44.615 | 130 | 69 | 3 | 10 | 138 | 54 | 181 | 7.35e-25 | 106 |
| MS.gene071301.t1 | AT3G11910 | 44.615 | 130 | 69 | 3 | 10 | 138 | 55 | 182 | 7.70e-25 | 106 |
| MS.gene071301.t1 | AT3G11910 | 44.615 | 130 | 69 | 3 | 10 | 138 | 55 | 182 | 7.70e-25 | 106 |
| MS.gene071301.t1 | AT3G58340 | 25.517 | 290 | 168 | 9 | 5 | 268 | 3 | 270 | 1.26e-16 | 79.7 |
| MS.gene071301.t1 | AT3G58340 | 24.667 | 300 | 168 | 9 | 5 | 268 | 3 | 280 | 1.39e-15 | 77.0 |
| MS.gene071301.t1 | AT3G58220 | 25.822 | 213 | 140 | 6 | 11 | 218 | 13 | 212 | 1.01e-14 | 74.3 |
| MS.gene071301.t1 | AT3G58370 | 28.125 | 224 | 132 | 9 | 1 | 218 | 1 | 201 | 4.44e-14 | 72.4 |
| MS.gene071301.t1 | AT3G58220 | 23.469 | 294 | 174 | 7 | 11 | 259 | 13 | 300 | 7.03e-14 | 72.0 |
| MS.gene071301.t1 | AT3G58360 | 27.083 | 192 | 119 | 6 | 9 | 199 | 7 | 178 | 7.92e-14 | 71.6 |
| MS.gene071301.t1 | AT3G44790 | 25.197 | 254 | 175 | 7 | 9 | 258 | 4 | 246 | 1.62e-13 | 70.9 |
| MS.gene071301.t1 | AT3G58220 | 27.072 | 181 | 130 | 2 | 11 | 190 | 13 | 192 | 8.05e-13 | 69.3 |
| MS.gene071301.t1 | AT3G58220 | 27.072 | 181 | 130 | 2 | 11 | 190 | 13 | 192 | 1.42e-12 | 68.2 |
| MS.gene071301.t1 | AT3G58220 | 30.469 | 128 | 85 | 3 | 11 | 135 | 13 | 139 | 2.52e-12 | 66.6 |
| MS.gene071301.t1 | AT3G27040 | 28.467 | 137 | 96 | 2 | 7 | 142 | 6 | 141 | 3.24e-12 | 66.2 |
| MS.gene071301.t1 | AT3G58240 | 24.458 | 323 | 207 | 10 | 8 | 319 | 6 | 302 | 3.67e-12 | 66.6 |
| MS.gene071301.t1 | AT2G25320 | 31.646 | 158 | 97 | 4 | 10 | 157 | 404 | 560 | 3.82e-11 | 65.1 |
| MS.gene071301.t1 | AT2G25320 | 31.646 | 158 | 97 | 4 | 10 | 157 | 405 | 561 | 3.96e-11 | 65.1 |
| MS.gene071301.t1 | AT3G58350 | 29.630 | 135 | 91 | 3 | 8 | 139 | 6 | 139 | 6.79e-11 | 62.8 |
| MS.gene071301.t1 | AT3G58350 | 29.630 | 135 | 91 | 3 | 8 | 139 | 6 | 139 | 6.79e-11 | 62.8 |
| MS.gene071301.t1 | AT2G25320 | 31.646 | 158 | 97 | 4 | 10 | 157 | 405 | 561 | 8.22e-11 | 63.9 |
| MS.gene071301.t1 | AT2G25330 | 30.208 | 192 | 123 | 5 | 10 | 190 | 359 | 550 | 8.46e-11 | 63.5 |
Find 62 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 8.2:+45839445 | MS.gene071301:CDS |
| GTACACTGCTAATATGTTTC+AGG | 0.178138 | 8.2:+45838338 | MS.gene071301:CDS |
| CCAAAGTCTCGACCACATTT+TGG | 0.217526 | 8.2:-45839649 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 8.2:-45839899 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.251806 | 8.2:-45839503 | None:intergenic |
| TTTGGAAAAGAACAGTTATT+TGG | 0.252160 | 8.2:+45839946 | MS.gene071301:CDS |
| CTCTCACCTTTCTTGTCTTA+AGG | 0.269117 | 8.2:-45839823 | None:intergenic |
| CGTTGGCCTTCTTCTAGTTC+TGG | 0.287736 | 8.2:-45839626 | None:intergenic |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | 8.2:+45839784 | MS.gene071301:CDS |
| ATGACGTTATCTGAGCTTCT+TGG | 0.325012 | 8.2:+45839479 | MS.gene071301:CDS |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | 8.2:+45839785 | MS.gene071301:CDS |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 8.2:+45839452 | MS.gene071301:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 8.2:-45839702 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 8.2:+45839521 | MS.gene071301:CDS |
| GCCTTGTGTTCAATCTGCTT+TGG | 0.362659 | 8.2:+45839928 | MS.gene071301:CDS |
| GGATGATTTGTCTGTATCAA+TGG | 0.368177 | 8.2:+45838271 | MS.gene071301:intron |
| TACTCTGAGCCTTTCATCCT+TGG | 0.374548 | 8.2:+45838155 | MS.gene071301:CDS |
| TCTCTCACTTGAATAAGATT+AGG | 0.386650 | 8.2:+45838126 | MS.gene071301:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.387611 | 8.2:+45839649 | MS.gene071301:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.389237 | 8.2:+45839769 | MS.gene071301:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 8.2:+45839446 | MS.gene071301:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 8.2:+45840069 | MS.gene071301:CDS |
| GATGATTTGTCTGTATCAAT+GGG | 0.407748 | 8.2:+45838272 | MS.gene071301:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 8.2:+45839436 | MS.gene071301:CDS |
| CCTTCTTCTAGTTCTGGCTC+TGG | 0.429903 | 8.2:-45839620 | None:intergenic |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 8.2:+45839658 | MS.gene071301:CDS |
| CAGTTATTTGGAGAAATTGA+AGG | 0.448720 | 8.2:+45839958 | MS.gene071301:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 8.2:-45839593 | None:intergenic |
| GTTAGAATTGGAAAGGCTAA+TGG | 0.457549 | 8.2:+45840018 | MS.gene071301:CDS |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 8.2:+45839900 | MS.gene071301:CDS |
| GGTAGCTCTAGAGTTAGAAT+TGG | 0.468868 | 8.2:+45840006 | MS.gene071301:CDS |
| ATAGATTTGGATGCTGAACT+AGG | 0.469976 | 8.2:+45840112 | MS.gene071301:CDS |
| AGCTTCTTGGTCCTGAAAGA+GGG | 0.472012 | 8.2:+45839492 | MS.gene071301:CDS |
| GAGCTTCTTGGTCCTGAAAG+AGG | 0.479843 | 8.2:+45839491 | MS.gene071301:CDS |
| TCTGAGCCTTTCATCCTTGG+CGG | 0.492833 | 8.2:+45838158 | MS.gene071301:CDS |
| TCATCCTTGGCGGCTATCCA+TGG | 0.501161 | 8.2:+45838168 | MS.gene071301:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 8.2:+45839768 | MS.gene071301:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 8.2:+45839817 | MS.gene071301:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 8.2:+45839659 | MS.gene071301:CDS |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.535745 | 8.2:+45839964 | MS.gene071301:CDS |
| GCCAGCAAGACACTTACAAA+AGG | 0.544024 | 8.2:+45838411 | MS.gene071301:CDS |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 8.2:-45839710 | None:intergenic |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 8.2:+45839505 | MS.gene071301:CDS |
| TCCAAAGCAGATTGAACACA+AGG | 0.565327 | 8.2:-45839929 | None:intergenic |
| GGATAGCCGCCAAGGATGAA+AGG | 0.566403 | 8.2:-45838164 | None:intergenic |
| TCCTGACACAAAATAAGCGA+AGG | 0.566723 | 8.2:-45839740 | None:intergenic |
| CCAGAGCCAGAACTAGAAGA+AGG | 0.572474 | 8.2:+45839620 | MS.gene071301:CDS |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 8.2:+45838090 | MS.gene071301:CDS |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 8.2:+45839665 | MS.gene071301:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 8.2:+45839700 | MS.gene071301:CDS |
| TACACTGCTAATATGTTTCA+GGG | 0.579049 | 8.2:+45838339 | MS.gene071301:CDS |
| CTGCTAATATGTTTCAGGGA+TGG | 0.579409 | 8.2:+45838343 | MS.gene071301:CDS |
| CTCTAGAGTTAGAATTGGAA+AGG | 0.585395 | 8.2:+45840011 | MS.gene071301:CDS |
| CATACCATGGATAGCCGCCA+AGG | 0.606316 | 8.2:-45838172 | None:intergenic |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 8.2:+45840072 | MS.gene071301:CDS |
| AGAAGGCCAACGCCAAAATG+TGG | 0.623253 | 8.2:+45839637 | MS.gene071301:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.644664 | 8.2:+45839961 | MS.gene071301:CDS |
| CCTGACACAAAATAAGCGAA+GGG | 0.648287 | 8.2:-45839739 | None:intergenic |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 8.2:+45839679 | MS.gene071301:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 8.2:+45839597 | MS.gene071301:CDS |
| TGATTTGTCTGTATCAATGG+GGG | 0.682465 | 8.2:+45838274 | MS.gene071301:CDS |
| ATGATTTGTCTGTATCAATG+GGG | 0.692803 | 8.2:+45838273 | MS.gene071301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGGAAAAATAAGAATT+TGG | + | chr8.2:45839260-45839279 | MS.gene071301:intron | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr8.2:45839865-45839884 | MS.gene071301:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr8.2:45838679-45838698 | None:intergenic | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr8.2:45838695-45838714 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr8.2:45838918-45838937 | None:intergenic | 20.0% |
| !! | ACATTAGAAGTTTAAAAAGT+CGG | - | chr8.2:45839036-45839055 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr8.2:45839902-45839921 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr8.2:45839864-45839883 | MS.gene071301:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr8.2:45839900-45839919 | MS.gene071301:CDS | 20.0% |
| ! | AATAGTTTCGTATCATATGA+GGG | - | chr8.2:45838221-45838240 | None:intergenic | 25.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr8.2:45839446-45839465 | MS.gene071301:CDS | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr8.2:45839354-45839373 | MS.gene071301:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr8.2:45839817-45839836 | MS.gene071301:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr8.2:45838188-45838207 | None:intergenic | 25.0% |
| ! | TTCCAACTCTTTCTAATATT+GGG | - | chr8.2:45838754-45838773 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr8.2:45838462-45838481 | MS.gene071301:intron | 25.0% |
| ! | TTTCCAACTCTTTCTAATAT+TGG | - | chr8.2:45838755-45838774 | None:intergenic | 25.0% |
| ! | TTTGGAAAAGAACAGTTATT+TGG | + | chr8.2:45839946-45839965 | MS.gene071301:CDS | 25.0% |
| !!! | AGATTTTGAAGAGATAGATT+TGG | + | chr8.2:45840099-45840118 | MS.gene071301:CDS | 25.0% |
| !!! | CTAAGTTATTTTAGATCAGT+CGG | + | chr8.2:45838485-45838504 | MS.gene071301:intron | 25.0% |
| !!! | CTTTTTATTTTTCAGTCTCA+AGG | + | chr8.2:45839184-45839203 | MS.gene071301:intron | 25.0% |
| AGGTCAAAAATCAAGACTTA+GGG | - | chr8.2:45838643-45838662 | None:intergenic | 30.0% | |
| CAATAGTTTCGTATCATATG+AGG | - | chr8.2:45838222-45838241 | None:intergenic | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | + | chr8.2:45839445-45839464 | MS.gene071301:CDS | 30.0% | |
| CAGTTATTTGGAGAAATTGA+AGG | + | chr8.2:45839958-45839977 | MS.gene071301:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr8.2:45839868-45839887 | MS.gene071301:CDS | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | - | chr8.2:45839143-45839162 | None:intergenic | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | - | chr8.2:45839307-45839326 | None:intergenic | 30.0% | |
| TACACTGCTAATATGTTTCA+GGG | + | chr8.2:45838339-45838358 | MS.gene071301:CDS | 30.0% | |
| TAGGTCAAAAATCAAGACTT+AGG | - | chr8.2:45838644-45838663 | None:intergenic | 30.0% | |
| TATAACTCACAGTAAGATTG+CGG | + | chr8.2:45838519-45838538 | MS.gene071301:intron | 30.0% | |
| TCTCTCACTTGAATAAGATT+AGG | + | chr8.2:45838126-45838145 | MS.gene071301:CDS | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | + | chr8.2:45839961-45839980 | MS.gene071301:CDS | 30.0% | |
| TTCCCAATATTAGAAAGAGT+TGG | + | chr8.2:45838749-45838768 | MS.gene071301:intron | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr8.2:45839428-45839447 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr8.2:45839023-45839042 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr8.2:45839452-45839471 | MS.gene071301:CDS | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | - | chr8.2:45839418-45839437 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | + | chr8.2:45838273-45838292 | MS.gene071301:CDS | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | + | chr8.2:45838272-45838291 | MS.gene071301:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr8.2:45839705-45839724 | None:intergenic | 30.0% |
| ! | TTGTAGATCACTGATTAAAG+AGG | - | chr8.2:45838597-45838616 | None:intergenic | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr8.2:45839393-45839412 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr8.2:45838250-45838269 | MS.gene071301:intron | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr8.2:45839762-45839781 | MS.gene071301:CDS | 35.0% | |
| ATAACTCACAGTAAGATTGC+GGG | + | chr8.2:45838520-45838539 | MS.gene071301:intron | 35.0% | |
| ATAGATTTGGATGCTGAACT+AGG | + | chr8.2:45840112-45840131 | MS.gene071301:CDS | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr8.2:45839597-45839616 | MS.gene071301:CDS | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr8.2:45839763-45839782 | MS.gene071301:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr8.2:45839713-45839732 | None:intergenic | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr8.2:45839985-45840004 | MS.gene071301:CDS | 35.0% | |
| GTACACTGCTAATATGTTTC+AGG | + | chr8.2:45838338-45838357 | MS.gene071301:CDS | 35.0% | |
| GTTAGAATTGGAAAGGCTAA+TGG | + | chr8.2:45840018-45840037 | MS.gene071301:CDS | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr8.2:45839505-45839524 | MS.gene071301:CDS | 35.0% | |
| TGCGCTCAACAAAATCATAA+AGG | + | chr8.2:45839244-45839263 | MS.gene071301:intron | 35.0% | |
| TGTATTGTGCGTGAAATTTG+TGG | + | chr8.2:45838932-45838951 | MS.gene071301:intron | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr8.2:45839506-45839525 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGAGCGCAAAACA+TGG | - | chr8.2:45839239-45839258 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr8.2:45839436-45839455 | MS.gene071301:CDS | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | + | chr8.2:45838271-45838290 | MS.gene071301:intron | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | + | chr8.2:45838274-45838293 | MS.gene071301:CDS | 35.0% |
| !! | CTCTAGAGTTAGAATTGGAA+AGG | + | chr8.2:45840011-45840030 | MS.gene071301:CDS | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | + | chr8.2:45838822-45838841 | MS.gene071301:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | + | chr8.2:45838821-45838840 | MS.gene071301:intron | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | - | chr8.2:45839302-45839321 | None:intergenic | 40.0% | |
| AAACGGTGAAGTACATGTAC+CGG | + | chr8.2:45838850-45838869 | MS.gene071301:intron | 40.0% | |
| ATGACGTTATCTGAGCTTCT+TGG | + | chr8.2:45839479-45839498 | MS.gene071301:CDS | 40.0% | |
| CCTGACACAAAATAAGCGAA+GGG | - | chr8.2:45839742-45839761 | None:intergenic | 40.0% | |
| CTCTCACCTTTCTTGTCTTA+AGG | - | chr8.2:45839826-45839845 | None:intergenic | 40.0% | |
| CTGCTAATATGTTTCAGGGA+TGG | + | chr8.2:45838343-45838362 | MS.gene071301:CDS | 40.0% | |
| GACTCAAACCCACGAAATTA+GGG | - | chr8.2:45838553-45838572 | None:intergenic | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr8.2:45839700-45839719 | MS.gene071301:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr8.2:45839659-45839678 | MS.gene071301:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr8.2:45839521-45839540 | MS.gene071301:CDS | 40.0% | |
| GTTCAAGTCCCTAATTTCGT+GGG | + | chr8.2:45838542-45838561 | MS.gene071301:intron | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr8.2:45839596-45839615 | None:intergenic | 40.0% | |
| TCCAAAGCAGATTGAACACA+AGG | - | chr8.2:45839932-45839951 | None:intergenic | 40.0% | |
| TCCTGACACAAAATAAGCGA+AGG | - | chr8.2:45839743-45839762 | None:intergenic | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | + | chr8.2:45839964-45839983 | MS.gene071301:CDS | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | - | chr8.2:45838415-45838434 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr8.2:45839665-45839684 | MS.gene071301:CDS | 40.0% |
| ! | CTGAAGCATGGGTTGTAAAA+CGG | + | chr8.2:45838833-45838852 | MS.gene071301:intron | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr8.2:45838663-45838682 | None:intergenic | 40.0% |
| ! | TTTTACAACCCATGCTTCAG+AGG | - | chr8.2:45838833-45838852 | None:intergenic | 40.0% |
| !! | GGTAGCTCTAGAGTTAGAAT+TGG | + | chr8.2:45840006-45840025 | MS.gene071301:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr8.2:45839768-45839787 | MS.gene071301:CDS | 45.0% | |
| AACGGTGAAGTACATGTACC+GGG | + | chr8.2:45838851-45838870 | MS.gene071301:intron | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr8.2:45839769-45839788 | MS.gene071301:CDS | 45.0% | |
| AGCTTCTTGGTCCTGAAAGA+GGG | + | chr8.2:45839492-45839511 | MS.gene071301:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr8.2:45839649-45839668 | MS.gene071301:CDS | 45.0% | |
| GAAGGAGGCGGAAAAACTAA+GGG | + | chr8.2:45839976-45839995 | MS.gene071301:CDS | 45.0% | |
| GCCAGCAAGACACTTACAAA+AGG | + | chr8.2:45838411-45838430 | MS.gene071301:CDS | 45.0% | |
| GCCTTGTGTTCAATCTGCTT+TGG | + | chr8.2:45839928-45839947 | MS.gene071301:CDS | 45.0% | |
| GGACTCAAACCCACGAAATT+AGG | - | chr8.2:45838554-45838573 | None:intergenic | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr8.2:45839679-45839698 | MS.gene071301:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr8.2:45839658-45839677 | MS.gene071301:CDS | 45.0% | |
| GGTCTTCTTCACCATGACAA+CGG | - | chr8.2:45838576-45838595 | None:intergenic | 45.0% | |
| GGTTCAAGTCCCTAATTTCG+TGG | + | chr8.2:45838541-45838560 | MS.gene071301:intron | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr8.2:45839756-45839775 | MS.gene071301:CDS | 45.0% | |
| GTCTTCTTCACCATGACAAC+GGG | - | chr8.2:45838575-45838594 | None:intergenic | 45.0% | |
| TACTCTGAGCCTTTCATCCT+TGG | + | chr8.2:45838155-45838174 | MS.gene071301:CDS | 45.0% | |
| TGAAGGAGGCGGAAAAACTA+AGG | + | chr8.2:45839975-45839994 | MS.gene071301:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr8.2:45840069-45840088 | MS.gene071301:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr8.2:45839652-45839671 | None:intergenic | 45.0% |
| !!! | CCCTTCGCTTATTTTGTGTC+AGG | + | chr8.2:45839739-45839758 | MS.gene071301:CDS | 45.0% |
| !!! | TTTAATTTTATAACTTTTTT+TGG | - | chr8.2:45838703-45838722 | None:intergenic | 5.0% |
| AGAAGGCCAACGCCAAAATG+TGG | + | chr8.2:45839637-45839656 | MS.gene071301:CDS | 50.0% | |
| CCAGAGCCAGAACTAGAAGA+AGG | + | chr8.2:45839620-45839639 | MS.gene071301:CDS | 50.0% | |
| CGAGCGATGAGAAGTTCACA+TGG | + | chr8.2:45838090-45838109 | MS.gene071301:CDS | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | + | chr8.2:45839785-45839804 | MS.gene071301:CDS | 50.0% | |
| GAGCTTCTTGGTCCTGAAAG+AGG | + | chr8.2:45839491-45839510 | MS.gene071301:CDS | 50.0% | |
| TCTGAGCCTTTCATCCTTGG+CGG | + | chr8.2:45838158-45838177 | MS.gene071301:CDS | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | + | chr8.2:45838279-45838298 | MS.gene071301:CDS | 50.0% | |
| !! | CCTTCTTCTAGTTCTGGCTC+TGG | - | chr8.2:45839623-45839642 | None:intergenic | 50.0% |
| !! | CGTTGGCCTTCTTCTAGTTC+TGG | - | chr8.2:45839629-45839648 | None:intergenic | 50.0% |
| !! | TCTCGACCACATTTTGGCGT+TGG | - | chr8.2:45839646-45839665 | None:intergenic | 50.0% |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr8.2:45840072-45840091 | MS.gene071301:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr8.2:45838175-45838194 | None:intergenic | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | + | chr8.2:45839784-45839803 | MS.gene071301:CDS | 55.0% | |
| GGATAGCCGCCAAGGATGAA+AGG | - | chr8.2:45838167-45838186 | None:intergenic | 55.0% | |
| GGGTTTGAGTCCCGTTGTCA+TGG | + | chr8.2:45838562-45838581 | MS.gene071301:intron | 55.0% | |
| TACCGTACGCGTACCCAGTA+CGG | - | chr8.2:45838884-45838903 | None:intergenic | 55.0% | |
| TCATCCTTGGCGGCTATCCA+TGG | + | chr8.2:45838168-45838187 | MS.gene071301:CDS | 55.0% | |
| ACCCAGTACGGGTGTGTACC+CGG | - | chr8.2:45838872-45838891 | None:intergenic | 60.0% | |
| ACCCGTACTGGGTACGCGTA+CGG | + | chr8.2:45838879-45838898 | MS.gene071301:intron | 60.0% | |
| ACCGGGTACACACCCGTACT+GGG | + | chr8.2:45838868-45838887 | MS.gene071301:intron | 60.0% | |
| ACCGTACGCGTACCCAGTAC+GGG | - | chr8.2:45838883-45838902 | None:intergenic | 60.0% | |
| GGGTACGCGTACGGTACTTG+TGG | + | chr8.2:45838888-45838907 | MS.gene071301:intron | 60.0% | |
| TACCGGGTACACACCCGTAC+TGG | + | chr8.2:45838867-45838886 | MS.gene071301:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 45838074 | 45840165 | 45838074 | ID=MS.gene071301 |
| chr8.2 | mRNA | 45838074 | 45840165 | 45838074 | ID=MS.gene071301.t1;Parent=MS.gene071301 |
| chr8.2 | exon | 45838074 | 45838189 | 45838074 | ID=MS.gene071301.t1.exon1;Parent=MS.gene071301.t1 |
| chr8.2 | CDS | 45838074 | 45838189 | 45838074 | ID=cds.MS.gene071301.t1;Parent=MS.gene071301.t1 |
| chr8.2 | exon | 45838272 | 45838432 | 45838272 | ID=MS.gene071301.t1.exon2;Parent=MS.gene071301.t1 |
| chr8.2 | CDS | 45838272 | 45838432 | 45838272 | ID=cds.MS.gene071301.t1;Parent=MS.gene071301.t1 |
| chr8.2 | exon | 45839429 | 45840165 | 45839429 | ID=MS.gene071301.t1.exon3;Parent=MS.gene071301.t1 |
| chr8.2 | CDS | 45839429 | 45840165 | 45839429 | ID=cds.MS.gene071301.t1;Parent=MS.gene071301.t1 |
| Gene Sequence |
| Protein sequence |
