Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08347.t1 | RHN42339.1 | 86.1 | 337 | 46 | 1 | 1 | 337 | 38 | 373 | 2.50E-172 | 614.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08347.t1 | Q8VYZ2 | 65.9 | 299 | 101 | 1 | 34 | 332 | 31 | 328 | 2.3e-118 | 426.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08347.t1 | A0A396GMG7 | 86.1 | 337 | 46 | 1 | 1 | 337 | 38 | 373 | 1.8e-172 | 614.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene08347 | 0.815184 | 1.05E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene08347 | 0.835856 | 1.32E-56 | -1.69E-46 |
| MS.gene049369 | MS.gene08347 | 0.813993 | 1.93E-51 | -1.69E-46 |
| MS.gene049488 | MS.gene08347 | 0.802779 | 4.77E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene08347 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene08347 | 0.802852 | 4.61E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene08347 | 0.815128 | 1.08E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene08347 | -0.804914 | 1.72E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene08347 | 0.813044 | 3.12E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene08347 | 0.810815 | 9.56E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene08347 | 0.849141 | 3.91E-60 | -1.69E-46 |
| MS.gene050971 | MS.gene08347 | 0.873622 | 1.27E-67 | -1.69E-46 |
| MS.gene05105 | MS.gene08347 | 0.84756 | 1.07E-59 | -1.69E-46 |
| MS.gene051360 | MS.gene08347 | 0.818481 | 1.92E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene08347 | 0.829245 | 5.73E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene08347 | 0.822684 | 2.08E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene08347 | 0.817458 | 3.26E-52 | -1.69E-46 |
| MS.gene051877 | MS.gene08347 | 0.810121 | 1.35E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene08347 | -0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene052128 | MS.gene08347 | -0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene08347 | 0.866358 | 3.02E-65 | -1.69E-46 |
| MS.gene052253 | MS.gene08347 | 0.834341 | 3.17E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene08347 | 0.816535 | 5.26E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene08347 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene08347 | 0.804565 | 2.03E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene08347 | 0.822587 | 2.19E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene08347 | 0.808641 | 2.80E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene08347 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene08347 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene08347 | 0.84829 | 6.73E-60 | -1.69E-46 |
| MS.gene052982 | MS.gene08347 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene08347 | 0.806098 | 9.70E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene08347 | 0.830369 | 3.05E-55 | -1.69E-46 |
| MS.gene053758 | MS.gene08347 | 0.843294 | 1.53E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene08347 | 0.801593 | 8.37E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene08347 | 0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene08347 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene08347 | 0.802499 | 5.45E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene08347 | 0.806429 | 8.26E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene08347 | 0.807202 | 5.67E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene08347 | 0.80533 | 1.41E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene08347 | 0.816161 | 6.38E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene08347 | 0.810167 | 1.32E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene08347 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene08347 | 0.806106 | 9.66E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene08347 | 0.81777 | 2.77E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene08347 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene08347 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene08347 | 0.822798 | 1.95E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene08347 | 0.816839 | 4.50E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene08347 | 0.826493 | 2.63E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene08347 | 0.821332 | 4.27E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene08347 | 0.837447 | 5.17E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene08347 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene08347 | 0.831334 | 1.77E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene08347 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene08347 | 0.808557 | 2.92E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene08347 | 0.818167 | 2.26E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene08347 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene08347 | 0.846423 | 2.19E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene08347 | 0.857743 | 1.33E-62 | -1.69E-46 |
| MS.gene058007 | MS.gene08347 | 0.821532 | 3.84E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene08347 | 0.815714 | 8.02E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene08347 | 0.837043 | 6.56E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene08347 | 0.813033 | 3.14E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene08347 | 0.825844 | 3.76E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene08347 | 0.831146 | 1.97E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene08347 | 0.862839 | 3.81E-64 | -1.69E-46 |
| MS.gene058948 | MS.gene08347 | 0.826643 | 2.42E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene08347 | 0.858214 | 9.61E-63 | -1.69E-46 |
| MS.gene059294 | MS.gene08347 | 0.839705 | 1.35E-57 | -1.69E-46 |
| MS.gene059366 | MS.gene08347 | 0.83247 | 9.28E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene08347 | 0.84707 | 1.46E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene08347 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene08347 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene08347 | 0.808245 | 3.40E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene08347 | 0.828101 | 1.08E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene08347 | 0.837999 | 3.73E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene08347 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene08347 | 0.821951 | 3.07E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene08347 | 0.802695 | 4.97E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene08347 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene08347 | 0.826683 | 2.37E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene08347 | 0.822641 | 2.12E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene08347 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene08347 | 0.847543 | 1.08E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene08347 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene08347 | 0.803382 | 3.58E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene08347 | 0.807715 | 4.42E-50 | -1.69E-46 |
| MS.gene061051 | MS.gene08347 | -0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene08347 | 0.849889 | 2.42E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08347.t1 | MTR_8g107620 | 63.158 | 304 | 112 | 0 | 34 | 337 | 37 | 340 | 1.87e-143 | 409 |
| MS.gene08347.t1 | MTR_8g107620 | 64.979 | 237 | 83 | 0 | 34 | 270 | 37 | 273 | 2.09e-113 | 330 |
| MS.gene08347.t1 | MTR_8g107620 | 52.303 | 304 | 104 | 2 | 34 | 337 | 37 | 299 | 1.62e-108 | 319 |
| MS.gene08347.t1 | MTR_0200s0050 | 63.889 | 216 | 77 | 1 | 122 | 337 | 6 | 220 | 1.82e-100 | 295 |
| MS.gene08347.t1 | MTR_6g071695 | 54.098 | 122 | 46 | 2 | 2 | 123 | 6 | 117 | 2.79e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08347.t1 | AT2G01890 | 61.538 | 325 | 124 | 1 | 8 | 332 | 5 | 328 | 5.37e-147 | 418 |
| MS.gene08347.t1 | AT1G14700 | 60.606 | 330 | 120 | 5 | 13 | 339 | 41 | 363 | 8.25e-145 | 414 |
| MS.gene08347.t1 | AT3G17790 | 56.627 | 332 | 137 | 3 | 7 | 334 | 5 | 333 | 4.56e-143 | 408 |
| MS.gene08347.t1 | AT2G01880 | 61.635 | 318 | 119 | 3 | 18 | 333 | 8 | 324 | 2.23e-142 | 406 |
| MS.gene08347.t1 | AT1G14700 | 60.000 | 330 | 120 | 6 | 13 | 339 | 41 | 361 | 8.02e-142 | 406 |
| MS.gene08347.t1 | AT1G25230 | 60.000 | 310 | 118 | 1 | 36 | 339 | 27 | 336 | 1.56e-138 | 397 |
| MS.gene08347.t1 | AT1G25230 | 60.000 | 310 | 118 | 1 | 36 | 339 | 50 | 359 | 3.40e-138 | 397 |
| MS.gene08347.t1 | AT1G14700 | 65.428 | 269 | 90 | 2 | 72 | 339 | 1 | 267 | 1.80e-130 | 374 |
| MS.gene08347.t1 | AT2G01890 | 66.031 | 262 | 89 | 0 | 72 | 333 | 1 | 262 | 1.25e-129 | 371 |
| MS.gene08347.t1 | AT2G01890 | 56.308 | 325 | 113 | 2 | 8 | 332 | 5 | 300 | 1.48e-125 | 362 |
| MS.gene08347.t1 | AT1G25230 | 61.567 | 268 | 103 | 0 | 72 | 339 | 1 | 268 | 5.12e-125 | 360 |
| MS.gene08347.t1 | AT1G14700 | 62.055 | 253 | 89 | 3 | 13 | 263 | 41 | 288 | 5.64e-115 | 335 |
Find 51 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTCTTT+TGG | 0.177187 | 4.1:+16971191 | None:intergenic |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4.1:-16970685 | MS.gene08347:intron |
| GGTAAAACTTCACTTCTTCC+AGG | 0.341025 | 4.1:+16970204 | None:intergenic |
| CACAAGTGGAGGTGGATCTA+AGG | 0.368211 | 4.1:-16970255 | MS.gene08347:CDS |
| CCCCGAGCCTGCAAAAGATT+TGG | 0.369661 | 4.1:-16971794 | MS.gene08347:CDS |
| AGGAAACTACAATCAATCTT+TGG | 0.388602 | 4.1:-16972398 | MS.gene08347:CDS |
| TGATCCATTTACCTTTAAGA+TGG | 0.409186 | 4.1:+16970674 | None:intergenic |
| TGGTGCAATCCAAGGCAAAA+TGG | 0.410813 | 4.1:-16970776 | MS.gene08347:CDS |
| TCAATCTTTGGTCGCCCATC+AGG | 0.411471 | 4.1:-16972386 | MS.gene08347:intron |
| ACACTAGAATGGAAGATAAC+AGG | 0.413725 | 4.1:+16972544 | None:intergenic |
| GATTTGTAGATGGGAATTGT+AGG | 0.414707 | 4.1:-16971930 | MS.gene08347:intron |
| TTATCGTGCAGAACTCTTGA+AGG | 0.422587 | 4.1:-16971144 | MS.gene08347:intron |
| GTAGAATGTTGATTCAGCTT+TGG | 0.428724 | 4.1:-16970796 | MS.gene08347:intron |
| CAAAAGAGCACACCTATGAT+TGG | 0.439184 | 4.1:-16971190 | MS.gene08347:CDS |
| CATTTCTTCACAAGTGGAGG+TGG | 0.441690 | 4.1:-16970263 | MS.gene08347:CDS |
| ATCAAAAGTGTTGGGCATCA+TGG | 0.462730 | 4.1:-16970729 | MS.gene08347:CDS |
| CTGCAAAAGATTTGGTATAG+TGG | 0.480578 | 4.1:-16971786 | MS.gene08347:intron |
| AAGGACACCATTCCAATCAT+AGG | 0.489134 | 4.1:+16971178 | None:intergenic |
| ATCATACCATCAAAAGTGTT+GGG | 0.491747 | 4.1:-16970737 | MS.gene08347:CDS |
| TTTAGATGGTGTTCAAACCT+TGG | 0.498027 | 4.1:+16972472 | None:intergenic |
| CGATATCAAGTCATGGAACC+TGG | 0.498083 | 4.1:-16970222 | MS.gene08347:CDS |
| AAGTTAAGAGATTGTTGTTG+TGG | 0.499896 | 4.1:+16972448 | None:intergenic |
| GTCGGAGATTGGGGAAGAAA+AGG | 0.511677 | 4.1:-16972418 | MS.gene08347:CDS |
| TTGCTGCTGAGAAGCTTCCA+AGG | 0.511973 | 4.1:-16972489 | MS.gene08347:CDS |
| GATCCATTTACCTTTAAGAT+GGG | 0.516464 | 4.1:+16970675 | None:intergenic |
| CATCATACCATCAAAAGTGT+TGG | 0.519638 | 4.1:-16970738 | MS.gene08347:CDS |
| TTCAGCTTTGGTGCAATCCA+AGG | 0.528201 | 4.1:-16970784 | MS.gene08347:CDS |
| ACAAATGATTCATAGAATGT+AGG | 0.528252 | 4.1:+16971831 | None:intergenic |
| GGAATTCATTTCTTCACAAG+TGG | 0.529011 | 4.1:-16970269 | MS.gene08347:CDS |
| AGCGTAATACTACACTAGAA+TGG | 0.529661 | 4.1:+16972533 | None:intergenic |
| CAACATCACCCCTGTAGTCA+TGG | 0.535679 | 4.1:+16971637 | None:intergenic |
| GGGGTAAATGATTACCTGAT+GGG | 0.540759 | 4.1:+16972372 | None:intergenic |
| ATTCATTTCTTCACAAGTGG+AGG | 0.548786 | 4.1:-16970266 | MS.gene08347:CDS |
| ACATGAATCCTTGTCCATCA+TGG | 0.549619 | 4.1:+16970183 | None:intergenic |
| AAGCTTCTCAGCAGCAACAA+TGG | 0.549652 | 4.1:+16972495 | None:intergenic |
| CAAGGCAAAATGGAAGATAG+TGG | 0.570741 | 4.1:-16970766 | MS.gene08347:CDS |
| AGCACATAATTGACAACGAA+AGG | 0.573877 | 4.1:-16970381 | MS.gene08347:intron |
| TGGTTCTGAAAGACATGGCA+CGG | 0.577625 | 4.1:-16972591 | None:intergenic |
| AATATTGATGCATACATCAA+CGG | 0.582530 | 4.1:-16970421 | MS.gene08347:CDS |
| TTTGGGTAACCATGACTACA+GGG | 0.585069 | 4.1:-16971646 | MS.gene08347:CDS |
| TGGTAATACACAAGAGCTTG+AGG | 0.597820 | 4.1:-16970709 | MS.gene08347:CDS |
| CACGATAAGATTCACGAGGA+AGG | 0.605639 | 4.1:+16971159 | None:intergenic |
| GGCAAAATGGAAGATAGTGG+TGG | 0.614472 | 4.1:-16970763 | MS.gene08347:CDS |
| GAGCACACCTATGATTGGAA+TGG | 0.624719 | 4.1:-16971185 | MS.gene08347:CDS |
| GGCGAGGCGATATCAAGTCA+TGG | 0.627535 | 4.1:-16970229 | MS.gene08347:CDS |
| CAATTATGTGCTGCAAACAA+TGG | 0.630087 | 4.1:+16970392 | None:intergenic |
| GTGGAGGTGGATCTAAGGCA+TGG | 0.636094 | 4.1:-16970250 | MS.gene08347:CDS |
| GGTGGATCTAAGGCATGGCG+AGG | 0.644853 | 4.1:-16970245 | MS.gene08347:CDS |
| GCAAAATGGAAGATAGTGGT+GGG | 0.652491 | 4.1:-16970762 | MS.gene08347:CDS |
| TTGGGTAACCATGACTACAG+GGG | 0.715140 | 4.1:-16971645 | MS.gene08347:CDS |
| TCTGCACGATAAGATTCACG+AGG | 0.785903 | 4.1:+16971155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAAATAAATATTTTCAT+TGG | + | chr4.1:16970958-16970977 | None:intergenic | 10.0% |
| !!! | TAAAAAAATGTTTGTTTTTA+AGG | - | chr4.1:16971160-16971179 | MS.gene08347:CDS | 10.0% |
| !!! | TGAAAATAAATATTTTCATT+GGG | + | chr4.1:16970957-16970976 | None:intergenic | 10.0% |
| !!! | TTAAAAACAAACATTTTTTT+AGG | + | chr4.1:16971161-16971180 | None:intergenic | 10.0% |
| !!! | TTTTATAGAAAAGTATTTTA+CGG | - | chr4.1:16971431-16971450 | MS.gene08347:intron | 10.0% |
| !! | ACAGTTAATTAACAAATTAA+AGG | - | chr4.1:16970509-16970528 | MS.gene08347:intron | 15.0% |
| !! | ATTACATATATAAAATGGTT+AGG | - | chr4.1:16970435-16970454 | MS.gene08347:intron | 15.0% |
| !! | TGTCTATTACATATATAAAA+TGG | - | chr4.1:16970430-16970449 | MS.gene08347:CDS | 15.0% |
| !! | TTACATATATAAAATGGTTA+GGG | - | chr4.1:16970436-16970455 | MS.gene08347:intron | 15.0% |
| !!! | ATTTTCAATATCTAACATTT+TGG | - | chr4.1:16971716-16971735 | MS.gene08347:intron | 15.0% |
| !!! | GTAAAATACTTTTCTATAAA+AGG | + | chr4.1:16971432-16971451 | None:intergenic | 15.0% |
| !!! | TGCATTAGATATTTTTTAAA+AGG | + | chr4.1:16971119-16971138 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATATCTAATGC+AGG | - | chr4.1:16971118-16971137 | MS.gene08347:intron | 15.0% |
| !! | AAATTTGATTCCAAAAAATC+TGG | - | chr4.1:16971194-16971213 | MS.gene08347:CDS | 20.0% |
| !! | AATACACACATAATTAAAAG+AGG | + | chr4.1:16970310-16970329 | None:intergenic | 20.0% |
| !! | ACATTATTTATTCTCTACTA+TGG | + | chr4.1:16971634-16971653 | None:intergenic | 20.0% |
| !!! | AATTGTAGAATTTTTCTTTG+TGG | - | chr4.1:16971398-16971417 | MS.gene08347:intron | 20.0% |
| !!! | ATTTTTGTTTGATTTGTAGA+TGG | - | chr4.1:16970707-16970726 | MS.gene08347:CDS | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | + | chr4.1:16971049-16971068 | None:intergenic | 20.0% |
| !!! | TATTTTGTAACCAGATTTTT+TGG | + | chr4.1:16971207-16971226 | None:intergenic | 20.0% |
| !!! | TGGAATCAAATTTTATTTAG+AGG | + | chr4.1:16971187-16971206 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGATTTGTAGAT+GGG | - | chr4.1:16970708-16970727 | MS.gene08347:CDS | 20.0% |
| ! | AAACACACGTTTATATTTCT+TGG | - | chr4.1:16971236-16971255 | MS.gene08347:CDS | 25.0% |
| ! | AATATTGATGCATACATCAA+CGG | - | chr4.1:16972226-16972245 | MS.gene08347:intron | 25.0% |
| ! | ACAAATGATTCATAGAATGT+AGG | + | chr4.1:16970819-16970838 | None:intergenic | 25.0% |
| ! | ATATAAAATGGTTAGGGATT+TGG | - | chr4.1:16970442-16970461 | MS.gene08347:intron | 25.0% |
| ! | GATGTGAAGTAAAAAATATG+AGG | + | chr4.1:16972046-16972065 | None:intergenic | 25.0% |
| !! | ACAACAATCTCTTAACTTTT+TGG | - | chr4.1:16970204-16970223 | MS.gene08347:CDS | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | + | chr4.1:16971050-16971069 | None:intergenic | 25.0% |
| !! | TTGAGATCTTTTATTCTTGA+TGG | - | chr4.1:16971083-16971102 | MS.gene08347:intron | 25.0% |
| !!! | TTTTTTTTGTTGCCAGTTTT+GGG | - | chr4.1:16970984-16971003 | MS.gene08347:intron | 25.0% |
| !!! | TTTTTTTTTGTTGCCAGTTT+TGG | - | chr4.1:16970983-16971002 | MS.gene08347:intron | 25.0% |
| AAGACAAAAAGATAGCAGAT+GGG | - | chr4.1:16971055-16971074 | MS.gene08347:intron | 30.0% | |
| AATATGCAAATTCAGACTTC+TGG | - | chr4.1:16971690-16971709 | MS.gene08347:intron | 30.0% | |
| AATTAAAAGAGGATGGAGTT+TGG | + | chr4.1:16970299-16970318 | None:intergenic | 30.0% | |
| AGGAAACTACAATCAATCTT+TGG | - | chr4.1:16970249-16970268 | MS.gene08347:CDS | 30.0% | |
| AGTGTAAAGTGAGAAAATGA+AGG | + | chr4.1:16970586-16970605 | None:intergenic | 30.0% | |
| ATGCATCAATATTGTTTGAC+TGG | + | chr4.1:16972219-16972238 | None:intergenic | 30.0% | |
| ATTAAAAGAGGATGGAGTTT+GGG | + | chr4.1:16970298-16970317 | None:intergenic | 30.0% | |
| CACACATAATTAAAAGAGGA+TGG | + | chr4.1:16970306-16970325 | None:intergenic | 30.0% | |
| GTTAATTCTATCTGACATTC+TGG | - | chr4.1:16971821-16971840 | MS.gene08347:CDS | 30.0% | |
| TAAGACAAAAAGATAGCAGA+TGG | - | chr4.1:16971054-16971073 | MS.gene08347:intron | 30.0% | |
| TACATGGTAGTTAACATCAA+AGG | - | chr4.1:16972102-16972121 | MS.gene08347:intron | 30.0% | |
| ! | AAGTTAAGAGATTGTTGTTG+TGG | + | chr4.1:16970202-16970221 | None:intergenic | 30.0% |
| ! | AGATCTTTTATTCTTGATGG+AGG | - | chr4.1:16971086-16971105 | MS.gene08347:intron | 30.0% |
| ! | ATAGATTTTGTGATCTCAAC+TGG | - | chr4.1:16970753-16970772 | MS.gene08347:CDS | 30.0% |
| ! | GGTGACAATTTTTACAAAGA+TGG | - | chr4.1:16970774-16970793 | MS.gene08347:CDS | 30.0% |
| ! | GTTGTATTCTATGACGTTTT+TGG | - | chr4.1:16972516-16972535 | MS.gene08347:CDS | 30.0% |
| ! | TAAGAGTTACATGTTTGCTA+TGG | + | chr4.1:16972135-16972154 | None:intergenic | 30.0% |
| ! | TCAATATGAGAATGATAACG+TGG | + | chr4.1:16972000-16972019 | None:intergenic | 30.0% |
| ! | TGATCCATTTACCTTTAAGA+TGG | + | chr4.1:16971976-16971995 | None:intergenic | 30.0% |
| ! | TTTTACAAAGATGGTCTAGA+AGG | - | chr4.1:16970783-16970802 | MS.gene08347:CDS | 30.0% |
| !! | AAATGAGTTACTGACTTTAG+AGG | + | chr4.1:16970470-16970489 | None:intergenic | 30.0% |
| !! | ATCATACCATCAAAAGTGTT+GGG | - | chr4.1:16971910-16971929 | MS.gene08347:CDS | 30.0% |
| !! | GATCCATTTACCTTTAAGAT+GGG | + | chr4.1:16971975-16971994 | None:intergenic | 30.0% |
| !!! | ATTGTTGTTGTGGTTTTAGA+TGG | + | chr4.1:16970192-16970211 | None:intergenic | 30.0% |
| AAAAGTTATCGAGTGTGTCA+CGG | - | chr4.1:16971603-16971622 | MS.gene08347:CDS | 35.0% | |
| ACAATTCCTGCACAAAAAAG+TGG | + | chr4.1:16971384-16971403 | None:intergenic | 35.0% | |
| ACACTAGAATGGAAGATAAC+AGG | + | chr4.1:16970106-16970125 | None:intergenic | 35.0% | |
| AGCACATAATTGACAACGAA+AGG | - | chr4.1:16972266-16972285 | MS.gene08347:intron | 35.0% | |
| AGCGTAATACTACACTAGAA+TGG | + | chr4.1:16970117-16970136 | None:intergenic | 35.0% | |
| ATTCATTTCTTCACAAGTGG+AGG | - | chr4.1:16972381-16972400 | MS.gene08347:intron | 35.0% | |
| CAATTATGTGCTGCAAACAA+TGG | + | chr4.1:16972258-16972277 | None:intergenic | 35.0% | |
| CTACGATGTTTAAGCAAACA+AGG | + | chr4.1:16972357-16972376 | None:intergenic | 35.0% | |
| CTTCCCATCTTAAAGGTAAA+TGG | - | chr4.1:16971969-16971988 | MS.gene08347:intron | 35.0% | |
| GATTTGTAGATGGGAATTGT+AGG | - | chr4.1:16970717-16970736 | MS.gene08347:CDS | 35.0% | |
| GGAATTCATTTCTTCACAAG+TGG | - | chr4.1:16972378-16972397 | MS.gene08347:intron | 35.0% | |
| TGGAAAGATAGTGTAGAAAG+TGG | + | chr4.1:16972199-16972218 | None:intergenic | 35.0% | |
| TGTTTGCTTAAACATCGTAG+TGG | - | chr4.1:16972357-16972376 | MS.gene08347:intron | 35.0% | |
| TTAAAAGAGGATGGAGTTTG+GGG | + | chr4.1:16970297-16970316 | None:intergenic | 35.0% | |
| TTTAGATGGTGTTCAAACCT+TGG | + | chr4.1:16970178-16970197 | None:intergenic | 35.0% | |
| ! | CACTATACCAAATCTTTTGC+AGG | + | chr4.1:16970863-16970882 | None:intergenic | 35.0% |
| ! | CATCATACCATCAAAAGTGT+TGG | - | chr4.1:16971909-16971928 | MS.gene08347:CDS | 35.0% |
| ! | CTGCAAAAGATTTGGTATAG+TGG | - | chr4.1:16970861-16970880 | MS.gene08347:intron | 35.0% |
| ! | GAAGTGAAGTTTTACCATGA+TGG | - | chr4.1:16972450-16972469 | MS.gene08347:CDS | 35.0% |
| !! | GTAGAATGTTGATTCAGCTT+TGG | - | chr4.1:16971851-16971870 | MS.gene08347:CDS | 35.0% |
| !! | GTTACATGTTTGCTATGGTT+CGG | + | chr4.1:16972130-16972149 | None:intergenic | 35.0% |
| !! | TCTCTTAACTTTTTGGTCGT+CGG | - | chr4.1:16970211-16970230 | MS.gene08347:CDS | 35.0% |
| !!! | AAGTTTTACCATGATGGACA+AGG | - | chr4.1:16972456-16972475 | MS.gene08347:CDS | 35.0% |
| !!! | ATTCTATGACGTTTTTGGCA+AGG | - | chr4.1:16972521-16972540 | MS.gene08347:CDS | 35.0% |
| !!! | TGTCGCTGCTTTAAGTTTTT+TGG | + | chr4.1:16972568-16972587 | None:intergenic | 35.0% |
| AAAATGATTCCGAGGACACA+TGG | - | chr4.1:16972067-16972086 | MS.gene08347:intron | 40.0% | |
| AAGGACACCATTCCAATCAT+AGG | + | chr4.1:16971472-16971491 | None:intergenic | 40.0% | |
| ACATGAATCCTTGTCCATCA+TGG | + | chr4.1:16972467-16972486 | None:intergenic | 40.0% | |
| CAAGGCAAAATGGAAGATAG+TGG | - | chr4.1:16971881-16971900 | MS.gene08347:CDS | 40.0% | |
| GGGGTAAATGATTACCTGAT+GGG | + | chr4.1:16970278-16970297 | None:intergenic | 40.0% | |
| GGTAAAACTTCACTTCTTCC+AGG | + | chr4.1:16972446-16972465 | None:intergenic | 40.0% | |
| TAGTCATGGTTACCCAAAAC+TGG | + | chr4.1:16970999-16971018 | None:intergenic | 40.0% | |
| TCACATCGAAAATGATTCCG+AGG | - | chr4.1:16972059-16972078 | MS.gene08347:intron | 40.0% | |
| TCACTTTACACTAGTACTCG+TGG | - | chr4.1:16970594-16970613 | MS.gene08347:intron | 40.0% | |
| TGGAGTATAACTATCACACG+AGG | - | chr4.1:16970614-16970633 | MS.gene08347:intron | 40.0% | |
| TGGGGTAAATGATTACCTGA+TGG | + | chr4.1:16970279-16970298 | None:intergenic | 40.0% | |
| TGGTAATACACAAGAGCTTG+AGG | - | chr4.1:16971938-16971957 | MS.gene08347:intron | 40.0% | |
| TTATCGTGCAGAACTCTTGA+AGG | - | chr4.1:16971503-16971522 | MS.gene08347:intron | 40.0% | |
| TTTGGGTAACCATGACTACA+GGG | - | chr4.1:16971001-16971020 | MS.gene08347:intron | 40.0% | |
| ! | ATGATGCCCAACACTTTTGA+TGG | + | chr4.1:16971919-16971938 | None:intergenic | 40.0% |
| ! | CAAAAGAGCACACCTATGAT+TGG | - | chr4.1:16971457-16971476 | MS.gene08347:intron | 40.0% |
| ! | CAATCATAGGTGTGCTCTTT+TGG | + | chr4.1:16971459-16971478 | None:intergenic | 40.0% |
| ! | CACTATCTTCCATTTTGCCT+TGG | + | chr4.1:16971883-16971902 | None:intergenic | 40.0% |
| ! | GCAAAATGGAAGATAGTGGT+GGG | - | chr4.1:16971885-16971904 | MS.gene08347:CDS | 40.0% |
| ! | TACCAAATCTTTTGCAGGCT+CGG | + | chr4.1:16970858-16970877 | None:intergenic | 40.0% |
| ! | TTGGCAAGGTTTTGCATAGA+TGG | - | chr4.1:16972535-16972554 | MS.gene08347:CDS | 40.0% |
| !! | AAGCTTCACTTTTAGAGGTG+TGG | + | chr4.1:16972334-16972353 | None:intergenic | 40.0% |
| !! | ATCAAAAGTGTTGGGCATCA+TGG | - | chr4.1:16971918-16971937 | MS.gene08347:CDS | 40.0% |
| !! | CAAGGAAGCTTCACTTTTAG+AGG | + | chr4.1:16972339-16972358 | None:intergenic | 40.0% |
| !! | TTTTGGGTAACCATGACTAC+AGG | - | chr4.1:16971000-16971019 | MS.gene08347:intron | 40.0% |
| !!! | TGCTTTCCACTTTTTTGTGC+AGG | - | chr4.1:16971375-16971394 | MS.gene08347:intron | 40.0% |
| AAGCTTCTCAGCAGCAACAA+TGG | + | chr4.1:16970155-16970174 | None:intergenic | 45.0% | |
| ATGGCTTAGTGTCGCATACA+TGG | - | chr4.1:16972086-16972105 | MS.gene08347:intron | 45.0% | |
| CACGATAAGATTCACGAGGA+AGG | + | chr4.1:16971491-16971510 | None:intergenic | 45.0% | |
| CATTTCTTCACAAGTGGAGG+TGG | - | chr4.1:16972384-16972403 | MS.gene08347:intron | 45.0% | |
| CGATATCAAGTCATGGAACC+TGG | - | chr4.1:16972425-16972444 | MS.gene08347:CDS | 45.0% | |
| GAGCACACCTATGATTGGAA+TGG | - | chr4.1:16971462-16971481 | MS.gene08347:intron | 45.0% | |
| GCAGCTTCTTCCCATCTTAA+AGG | - | chr4.1:16971962-16971981 | MS.gene08347:intron | 45.0% | |
| GTGCAGAACTCTTGAAGGTA+AGG | - | chr4.1:16971508-16971527 | MS.gene08347:intron | 45.0% | |
| TCTGCACGATAAGATTCACG+AGG | + | chr4.1:16971495-16971514 | None:intergenic | 45.0% | |
| TGGTGCAATCCAAGGCAAAA+TGG | - | chr4.1:16971871-16971890 | MS.gene08347:CDS | 45.0% | |
| TTGGGTAACCATGACTACAG+GGG | - | chr4.1:16971002-16971021 | MS.gene08347:intron | 45.0% | |
| ! | ACCAAATCTTTTGCAGGCTC+GGG | + | chr4.1:16970857-16970876 | None:intergenic | 45.0% |
| ! | GGCAAAATGGAAGATAGTGG+TGG | - | chr4.1:16971884-16971903 | MS.gene08347:CDS | 45.0% |
| ! | TTCAGCTTTGGTGCAATCCA+AGG | - | chr4.1:16971863-16971882 | MS.gene08347:CDS | 45.0% |
| !! | ACTTTTTGGTCGTCGGAGAT+TGG | - | chr4.1:16970218-16970237 | MS.gene08347:CDS | 45.0% |
| !! | CTTTTTGGTCGTCGGAGATT+GGG | - | chr4.1:16970219-16970238 | MS.gene08347:CDS | 45.0% |
| !! | TTTTTGGTCGTCGGAGATTG+GGG | - | chr4.1:16970220-16970239 | MS.gene08347:CDS | 45.0% |
| CAACATCACCCCTGTAGTCA+TGG | + | chr4.1:16971013-16971032 | None:intergenic | 50.0% | |
| CACAAGTGGAGGTGGATCTA+AGG | - | chr4.1:16972392-16972411 | MS.gene08347:CDS | 50.0% | |
| GACACTAAGCCATGTGTCCT+CGG | + | chr4.1:16972079-16972098 | None:intergenic | 50.0% | |
| GTCGGAGATTGGGGAAGAAA+AGG | - | chr4.1:16970229-16970248 | MS.gene08347:CDS | 50.0% | |
| TCAATCTTTGGTCGCCCATC+AGG | - | chr4.1:16970261-16970280 | MS.gene08347:CDS | 50.0% | |
| TTGCTGCTGAGAAGCTTCCA+AGG | - | chr4.1:16970158-16970177 | MS.gene08347:CDS | 50.0% | |
| ! | CCAAATCTTTTGCAGGCTCG+GGG | + | chr4.1:16970856-16970875 | None:intergenic | 50.0% |
| CCCCGAGCCTGCAAAAGATT+TGG | - | chr4.1:16970853-16970872 | MS.gene08347:intron | 55.0% | |
| GGCGAGGCGATATCAAGTCA+TGG | - | chr4.1:16972418-16972437 | MS.gene08347:CDS | 55.0% | |
| ! | GTGGAGGTGGATCTAAGGCA+TGG | - | chr4.1:16972397-16972416 | MS.gene08347:CDS | 55.0% |
| ! | GGTGGATCTAAGGCATGGCG+AGG | - | chr4.1:16972402-16972421 | MS.gene08347:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16970070 | 16972599 | 16970070 | ID=MS.gene08347 |
| chr4.1 | mRNA | 16970070 | 16972599 | 16970070 | ID=MS.gene08347.t1;Parent=MS.gene08347 |
| chr4.1 | exon | 16972387 | 16972599 | 16972387 | ID=MS.gene08347.t1.exon1;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16972387 | 16972599 | 16972387 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16971787 | 16971943 | 16971787 | ID=MS.gene08347.t1.exon2;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16971787 | 16971943 | 16971787 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16971562 | 16971669 | 16971562 | ID=MS.gene08347.t1.exon3;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16971562 | 16971669 | 16971562 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16971145 | 16971272 | 16971145 | ID=MS.gene08347.t1.exon4;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16971145 | 16971272 | 16971145 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16970686 | 16970814 | 16970686 | ID=MS.gene08347.t1.exon5;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16970686 | 16970814 | 16970686 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16970382 | 16970449 | 16970382 | ID=MS.gene08347.t1.exon6;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16970382 | 16970449 | 16970382 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| chr4.1 | exon | 16970070 | 16970292 | 16970070 | ID=MS.gene08347.t1.exon7;Parent=MS.gene08347.t1 |
| chr4.1 | CDS | 16970070 | 16970292 | 16970070 | ID=cds.MS.gene08347.t1;Parent=MS.gene08347.t1 |
| Gene Sequence |
| Protein sequence |
