Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08871.t1 | XP_003606385.1 | 99.4 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 8.00E-84 | 319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08871.t1 | O50003 | 93.4 | 166 | 11 | 0 | 1 | 166 | 1 | 166 | 1.2e-80 | 300.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08871.t1 | B7FH91 | 99.4 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 5.8e-84 | 319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049361 | MS.gene08871 | 0.815084 | 1.11E-51 | -1.69E-46 |
MS.gene049387 | MS.gene08871 | 0.817405 | 3.35E-52 | -1.69E-46 |
MS.gene050134 | MS.gene08871 | 0.983909 | 4.76E-159 | -1.69E-46 |
MS.gene050252 | MS.gene08871 | 0.832709 | 8.10E-56 | -1.69E-46 |
MS.gene050791 | MS.gene08871 | 0.897163 | 1.83E-76 | -1.69E-46 |
MS.gene050912 | MS.gene08871 | 0.834308 | 3.23E-56 | -1.69E-46 |
MS.gene051904 | MS.gene08871 | 0.835768 | 1.38E-56 | -1.69E-46 |
MS.gene051984 | MS.gene08871 | 0.862105 | 6.41E-64 | -1.69E-46 |
MS.gene052664 | MS.gene08871 | 0.90223 | 1.20E-78 | -1.69E-46 |
MS.gene052666 | MS.gene08871 | 0.866197 | 3.40E-65 | -1.69E-46 |
MS.gene053224 | MS.gene08871 | 0.924276 | 8.74E-90 | -1.69E-46 |
MS.gene054624 | MS.gene08871 | 0.807188 | 5.71E-50 | -1.69E-46 |
MS.gene057272 | MS.gene08871 | 0.915147 | 8.32E-85 | -1.69E-46 |
MS.gene057641 | MS.gene08871 | 0.868307 | 7.19E-66 | -1.69E-46 |
MS.gene057643 | MS.gene08871 | 0.898794 | 3.74E-77 | -1.69E-46 |
MS.gene057738 | MS.gene08871 | 0.809694 | 1.67E-50 | -1.69E-46 |
MS.gene059340 | MS.gene08871 | 0.856278 | 3.58E-62 | -1.69E-46 |
MS.gene060432 | MS.gene08871 | 0.820478 | 6.71E-53 | -1.69E-46 |
MS.gene060483 | MS.gene08871 | 0.877266 | 7.21E-69 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08871 | MS.gene75537 | PPI |
MS.gene08871 | MS.gene007661 | PPI |
MS.gene066163 | MS.gene08871 | PPI |
MS.gene059422 | MS.gene08871 | PPI |
MS.gene040581 | MS.gene08871 | PPI |
MS.gene007661 | MS.gene08871 | PPI |
MS.gene08871 | MS.gene24598 | PPI |
MS.gene08871 | MS.gene99744 | PPI |
MS.gene08871 | MS.gene067072 | PPI |
MS.gene08871 | MS.gene029242 | PPI |
MS.gene08871 | MS.gene050134 | PPI |
MS.gene08871 | MS.gene045180 | PPI |
MS.gene08871 | MS.gene41916 | PPI |
MS.gene08871 | MS.gene45417 | PPI |
MS.gene08871 | MS.gene08636 | PPI |
MS.gene08871 | MS.gene001986 | PPI |
MS.gene08871 | MS.gene007662 | PPI |
MS.gene08871 | MS.gene063366 | PPI |
MS.gene08870 | MS.gene08871 | PPI |
MS.gene08871 | MS.gene060216 | PPI |
MS.gene08871 | MS.gene029840 | PPI |
MS.gene08871 | MS.gene054186 | PPI |
MS.gene08871 | MS.gene056257 | PPI |
MS.gene08871 | MS.gene039110 | PPI |
MS.gene08871 | MS.gene63721 | PPI |
MS.gene08871 | MS.gene037324 | PPI |
MS.gene08636 | MS.gene08871 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08871.t1 | MTR_4g059400 | 99.398 | 166 | 1 | 0 | 1 | 166 | 1 | 166 | 1.89e-116 | 327 |
MS.gene08871.t1 | MTR_1g064500 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 2.24e-114 | 321 |
MS.gene08871.t1 | MTR_2g094300 | 83.537 | 164 | 27 | 0 | 1 | 164 | 1 | 164 | 1.50e-97 | 279 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08871.t1 | AT5G60670 | 90.361 | 166 | 16 | 0 | 1 | 166 | 1 | 166 | 9.53e-108 | 305 |
MS.gene08871.t1 | AT2G37190 | 89.759 | 166 | 17 | 0 | 1 | 166 | 1 | 166 | 1.20e-107 | 304 |
MS.gene08871.t1 | AT3G53430 | 89.157 | 166 | 18 | 0 | 1 | 166 | 1 | 166 | 2.70e-107 | 303 |
Find 64 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTTCTTGCGGTCCCTTTC+TGG | 0.085933 | 4.2:-44277643 | None:intergenic |
CGGAACGGTGAAGGAGATTT+TGG | 0.108347 | 4.2:+44277759 | MS.gene08871:CDS |
GGACGTAAACTTCGACGATT+TGG | 0.192090 | 4.2:-44277402 | None:intergenic |
CCAATCCTTGGCGGTTTCTT+TGG | 0.201986 | 4.2:-44277518 | None:intergenic |
CCAAGGATTGGAAGGGTCTT+AGG | 0.217246 | 4.2:+44277530 | MS.gene08871:CDS |
ATGTCTTCTCCGATCTTCTT+TGG | 0.296410 | 4.2:-44277493 | None:intergenic |
ACTAAGAACATCAAGCATAA+TGG | 0.336453 | 4.2:+44277664 | MS.gene08871:CDS |
TCTGTTGGGTGTACTGTTGA+TGG | 0.361476 | 4.2:+44277793 | MS.gene08871:CDS |
CTAAGAACATCAAGCATAAT+GGG | 0.363010 | 4.2:+44277665 | MS.gene08871:CDS |
GACGTAAACTTCGACGATTT+GGG | 0.369524 | 4.2:-44277401 | None:intergenic |
CAAAATCTCCTTCACCGTTC+CGG | 0.392918 | 4.2:-44277758 | None:intergenic |
ATCTCCTGCTGCAAATCCTT+TGG | 0.401059 | 4.2:-44277823 | None:intergenic |
ATTTGGGATGGATCGAGCTT+TGG | 0.421723 | 4.2:-44277385 | None:intergenic |
TTGGGGACTTGTGTTTCTGT+TGG | 0.422484 | 4.2:+44277778 | MS.gene08871:CDS |
TGCGGCGGCGCTGGTTATCA+AGG | 0.430495 | 4.2:+44277609 | MS.gene08871:CDS |
CCAAAGAAACCGCCAAGGAT+TGG | 0.444226 | 4.2:+44277518 | MS.gene08871:CDS |
TGGGGACTTGTGTTTCTGTT+GGG | 0.450633 | 4.2:+44277779 | MS.gene08871:CDS |
TGTTCCGTCTGCGGCGGCGC+TGG | 0.455070 | 4.2:+44277600 | MS.gene08871:CDS |
GAGACCGAGAGGACCGATCT+TGG | 0.459185 | 4.2:-44277467 | None:intergenic |
GGCTTTGAAGGAACCAGAAA+GGG | 0.473237 | 4.2:+44277630 | MS.gene08871:CDS |
GATCTTGGGAGCGAGGGAAC+TGG | 0.475143 | 4.2:-44277452 | None:intergenic |
GAAGTTTACGTCCGCGTCAC+CGG | 0.477456 | 4.2:+44277412 | MS.gene08871:CDS |
GCTGGTTATCAAGGCTTTGA+AGG | 0.478691 | 4.2:+44277618 | MS.gene08871:CDS |
AGACCGAGAGGACCGATCTT+GGG | 0.482147 | 4.2:-44277466 | None:intergenic |
CGCGTCACCGGCGGTGAAGT+CGG | 0.482477 | 4.2:+44277424 | MS.gene08871:CDS |
AGTTCCCTCGCTCCCAAGAT+CGG | 0.485343 | 4.2:+44277454 | MS.gene08871:CDS |
TCGATGGCGAAGGAGCTTGC+CGG | 0.485429 | 4.2:+44277739 | MS.gene08871:CDS |
CAAGGATTGGAAGGGTCTTA+GGG | 0.485831 | 4.2:+44277531 | MS.gene08871:CDS |
AAGACCCTTCCAATCCTTGG+CGG | 0.491678 | 4.2:-44277527 | None:intergenic |
GATTATGAAGCCGAGGTCGA+TGG | 0.494531 | 4.2:+44277723 | MS.gene08871:CDS |
CTGTTGGGTGTACTGTTGAT+GGG | 0.503488 | 4.2:+44277794 | MS.gene08871:CDS |
CCTAAGACCCTTCCAATCCT+TGG | 0.507224 | 4.2:-44277530 | None:intergenic |
TGGGATGGATCGAGCTTTGG+CGG | 0.507491 | 4.2:-44277382 | None:intergenic |
GGCGAAGGAGCTTGCCGGAA+CGG | 0.508951 | 4.2:+44277744 | MS.gene08871:CDS |
CGCTGTTGTTCCGTCTGCGG+CGG | 0.521792 | 4.2:+44277594 | MS.gene08871:CDS |
GCTCCCAAGATCGGTCCTCT+CGG | 0.529023 | 4.2:+44277463 | MS.gene08871:CDS |
GGAGCTTGCCGGAACGGTGA+AGG | 0.535229 | 4.2:+44277750 | MS.gene08871:CDS |
AGCTCCTTCGCCATCGACCT+CGG | 0.537913 | 4.2:-44277733 | None:intergenic |
AGAAACCGCCAAGGATTGGA+AGG | 0.540852 | 4.2:+44277522 | MS.gene08871:CDS |
CGTTCAGAATCGTCAGGCTA+AGG | 0.541896 | 4.2:+44277570 | MS.gene08871:CDS |
GTTGAGATTCCTCAGGATTG+AGG | 0.542687 | 4.2:+44277859 | MS.gene08871:CDS |
GGCAGCTCCGACTTCACCGC+CGG | 0.547290 | 4.2:-44277431 | None:intergenic |
GCTCACCGTTCAGAATCGTC+AGG | 0.553915 | 4.2:+44277564 | MS.gene08871:CDS |
AGATCCAAAGGATTTGCAGC+AGG | 0.556469 | 4.2:+44277819 | MS.gene08871:CDS |
AGGCTTTGAAGGAACCAGAA+AGG | 0.556759 | 4.2:+44277629 | MS.gene08871:CDS |
TGATGTTCTTAGTCTTCTTG+CGG | 0.558436 | 4.2:-44277654 | None:intergenic |
AGGACCGATCTTGGGAGCGA+GGG | 0.558873 | 4.2:-44277458 | None:intergenic |
CGACTTCACCGCCGGTGACG+CGG | 0.560163 | 4.2:-44277423 | None:intergenic |
TGGTGATGTTGAGATTCCTC+AGG | 0.564181 | 4.2:+44277852 | MS.gene08871:CDS |
GAGGACCGATCTTGGGAGCG+AGG | 0.581430 | 4.2:-44277459 | None:intergenic |
GGTCTCTCACCAAAGAAGAT+CGG | 0.586947 | 4.2:+44277484 | MS.gene08871:CDS |
ATAACCAGCGCCGCCGCAGA+CGG | 0.589868 | 4.2:-44277604 | None:intergenic |
TTGCAGCAGGAGATTAGTGA+TGG | 0.592966 | 4.2:+44277832 | MS.gene08871:CDS |
GAAGCCGAGGTCGATGGCGA+AGG | 0.599042 | 4.2:+44277729 | MS.gene08871:CDS |
GTTTACGTCCGCGTCACCGG+CGG | 0.607165 | 4.2:+44277415 | MS.gene08871:CDS |
TAAACTTCGACGATTTGGGA+TGG | 0.609008 | 4.2:-44277397 | None:intergenic |
TGTTGATGGGAAAGATCCAA+AGG | 0.621231 | 4.2:+44277807 | MS.gene08871:CDS |
GGTCGCTGTTGTTCCGTCTG+CGG | 0.635590 | 4.2:+44277591 | MS.gene08871:CDS |
TTGCGAAGATTATGAAGCCG+AGG | 0.654828 | 4.2:+44277716 | MS.gene08871:CDS |
TTCTTTGGTGAGAGACCGAG+AGG | 0.661014 | 4.2:-44277478 | None:intergenic |
CTTAGCCTGACGATTCTGAA+CGG | 0.665775 | 4.2:-44277569 | None:intergenic |
GAAACCGCCAAGGATTGGAA+GGG | 0.668035 | 4.2:+44277523 | MS.gene08871:CDS |
CATCGCCAAAGAAACCGCCA+AGG | 0.687884 | 4.2:+44277513 | MS.gene08871:CDS |
CAACAACCACCTCAATCCTG+AGG | 0.689306 | 4.2:-44277868 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ACTAAGAACATCAAGCATAA+TGG | + | chr4.2:44277664-44277683 | MS.gene08871:CDS | 30.0% | |
CTAAGAACATCAAGCATAAT+GGG | + | chr4.2:44277665-44277684 | MS.gene08871:CDS | 30.0% | |
! | TGATGTTCTTAGTCTTCTTG+CGG | - | chr4.2:44277657-44277676 | None:intergenic | 35.0% |
ATGTCTTCTCCGATCTTCTT+TGG | - | chr4.2:44277496-44277515 | None:intergenic | 40.0% | |
GACGTAAACTTCGACGATTT+GGG | - | chr4.2:44277404-44277423 | None:intergenic | 40.0% | |
! | TAAACTTCGACGATTTGGGA+TGG | - | chr4.2:44277400-44277419 | None:intergenic | 40.0% |
! | TGTTGATGGGAAAGATCCAA+AGG | + | chr4.2:44277807-44277826 | MS.gene08871:CDS | 40.0% |
AGATCCAAAGGATTTGCAGC+AGG | + | chr4.2:44277819-44277838 | MS.gene08871:CDS | 45.0% | |
ATCTCCTGCTGCAAATCCTT+TGG | - | chr4.2:44277826-44277845 | None:intergenic | 45.0% | |
CAAAATCTCCTTCACCGTTC+CGG | - | chr4.2:44277761-44277780 | None:intergenic | 45.0% | |
CAAGGATTGGAAGGGTCTTA+GGG | + | chr4.2:44277531-44277550 | MS.gene08871:CDS | 45.0% | |
CTGTTGGGTGTACTGTTGAT+GGG | + | chr4.2:44277794-44277813 | MS.gene08871:CDS | 45.0% | |
CTTAGCCTGACGATTCTGAA+CGG | - | chr4.2:44277572-44277591 | None:intergenic | 45.0% | |
GGACGTAAACTTCGACGATT+TGG | - | chr4.2:44277405-44277424 | None:intergenic | 45.0% | |
GGTCTCTCACCAAAGAAGAT+CGG | + | chr4.2:44277484-44277503 | MS.gene08871:CDS | 45.0% | |
TCTGTTGGGTGTACTGTTGA+TGG | + | chr4.2:44277793-44277812 | MS.gene08871:CDS | 45.0% | |
TTGCAGCAGGAGATTAGTGA+TGG | + | chr4.2:44277832-44277851 | MS.gene08871:CDS | 45.0% | |
TTGCGAAGATTATGAAGCCG+AGG | + | chr4.2:44277716-44277735 | MS.gene08871:CDS | 45.0% | |
! | ATTTGGGATGGATCGAGCTT+TGG | - | chr4.2:44277388-44277407 | None:intergenic | 45.0% |
! | GAACGGTGAAGGAGATTTTG+GGG | + | chr4.2:44277761-44277780 | MS.gene08871:CDS | 45.0% |
! | GCTGGTTATCAAGGCTTTGA+AGG | + | chr4.2:44277618-44277637 | MS.gene08871:CDS | 45.0% |
! | GGAACGGTGAAGGAGATTTT+GGG | + | chr4.2:44277760-44277779 | MS.gene08871:CDS | 45.0% |
! | TGGGGACTTGTGTTTCTGTT+GGG | + | chr4.2:44277779-44277798 | MS.gene08871:CDS | 45.0% |
! | TGGTGATGTTGAGATTCCTC+AGG | + | chr4.2:44277852-44277871 | MS.gene08871:CDS | 45.0% |
! | TTGGGGACTTGTGTTTCTGT+TGG | + | chr4.2:44277778-44277797 | MS.gene08871:CDS | 45.0% |
!! | AGGCTTTGAAGGAACCAGAA+AGG | + | chr4.2:44277629-44277648 | MS.gene08871:CDS | 45.0% |
!! | GGCTTTGAAGGAACCAGAAA+GGG | + | chr4.2:44277630-44277649 | MS.gene08871:CDS | 45.0% |
AAGACCCTTCCAATCCTTGG+CGG | - | chr4.2:44277530-44277549 | None:intergenic | 50.0% | |
AGAAACCGCCAAGGATTGGA+AGG | + | chr4.2:44277522-44277541 | MS.gene08871:CDS | 50.0% | |
CCAAAGAAACCGCCAAGGAT+TGG | + | chr4.2:44277518-44277537 | MS.gene08871:CDS | 50.0% | |
CCAAGGATTGGAAGGGTCTT+AGG | + | chr4.2:44277530-44277549 | MS.gene08871:CDS | 50.0% | |
CCAATCCTTGGCGGTTTCTT+TGG | - | chr4.2:44277521-44277540 | None:intergenic | 50.0% | |
CCTAAGACCCTTCCAATCCT+TGG | - | chr4.2:44277533-44277552 | None:intergenic | 50.0% | |
CGTTCAGAATCGTCAGGCTA+AGG | + | chr4.2:44277570-44277589 | MS.gene08871:CDS | 50.0% | |
GAAACCGCCAAGGATTGGAA+GGG | + | chr4.2:44277523-44277542 | MS.gene08871:CDS | 50.0% | |
GATTATGAAGCCGAGGTCGA+TGG | + | chr4.2:44277723-44277742 | MS.gene08871:CDS | 50.0% | |
TTCTTTGGTGAGAGACCGAG+AGG | - | chr4.2:44277481-44277500 | None:intergenic | 50.0% | |
! | CGGAACGGTGAAGGAGATTT+TGG | + | chr4.2:44277759-44277778 | MS.gene08871:CDS | 50.0% |
AGACCGAGAGGACCGATCTT+GGG | - | chr4.2:44277469-44277488 | None:intergenic | 55.0% | |
AGTTCCCTCGCTCCCAAGAT+CGG | + | chr4.2:44277454-44277473 | MS.gene08871:CDS | 55.0% | |
CATCGCCAAAGAAACCGCCA+AGG | + | chr4.2:44277513-44277532 | MS.gene08871:CDS | 55.0% | |
GAAGTTTACGTCCGCGTCAC+CGG | + | chr4.2:44277412-44277431 | MS.gene08871:CDS | 55.0% | |
GCTCACCGTTCAGAATCGTC+AGG | + | chr4.2:44277564-44277583 | MS.gene08871:CDS | 55.0% | |
GTCTTCTTGCGGTCCCTTTC+TGG | - | chr4.2:44277646-44277665 | None:intergenic | 55.0% | |
! | TGGGATGGATCGAGCTTTGG+CGG | - | chr4.2:44277385-44277404 | None:intergenic | 55.0% |
AGCTCCTTCGCCATCGACCT+CGG | - | chr4.2:44277736-44277755 | None:intergenic | 60.0% | |
AGGACCGATCTTGGGAGCGA+GGG | - | chr4.2:44277461-44277480 | None:intergenic | 60.0% | |
GAGACCGAGAGGACCGATCT+TGG | - | chr4.2:44277470-44277489 | None:intergenic | 60.0% | |
GATCTTGGGAGCGAGGGAAC+TGG | - | chr4.2:44277455-44277474 | None:intergenic | 60.0% | |
GCTCCCAAGATCGGTCCTCT+CGG | + | chr4.2:44277463-44277482 | MS.gene08871:CDS | 60.0% | |
GGTCGCTGTTGTTCCGTCTG+CGG | + | chr4.2:44277591-44277610 | MS.gene08871:CDS | 60.0% | |
TCGATGGCGAAGGAGCTTGC+CGG | + | chr4.2:44277739-44277758 | MS.gene08871:CDS | 60.0% | |
ATAACCAGCGCCGCCGCAGA+CGG | - | chr4.2:44277607-44277626 | None:intergenic | 65.0% | |
CGCTGTTGTTCCGTCTGCGG+CGG | + | chr4.2:44277594-44277613 | MS.gene08871:CDS | 65.0% | |
GAAGCCGAGGTCGATGGCGA+AGG | + | chr4.2:44277729-44277748 | MS.gene08871:CDS | 65.0% | |
GAGGACCGATCTTGGGAGCG+AGG | - | chr4.2:44277462-44277481 | None:intergenic | 65.0% | |
GGAGCTTGCCGGAACGGTGA+AGG | + | chr4.2:44277750-44277769 | MS.gene08871:CDS | 65.0% | |
GGCGAAGGAGCTTGCCGGAA+CGG | + | chr4.2:44277744-44277763 | MS.gene08871:CDS | 65.0% | |
GTTTACGTCCGCGTCACCGG+CGG | + | chr4.2:44277415-44277434 | MS.gene08871:CDS | 65.0% | |
!! | TGCGGCGGCGCTGGTTATCA+AGG | + | chr4.2:44277609-44277628 | MS.gene08871:CDS | 65.0% |
CGACTTCACCGCCGGTGACG+CGG | - | chr4.2:44277426-44277445 | None:intergenic | 70.0% | |
CGCGTCACCGGCGGTGAAGT+CGG | + | chr4.2:44277424-44277443 | MS.gene08871:CDS | 70.0% | |
GGCAGCTCCGACTTCACCGC+CGG | - | chr4.2:44277434-44277453 | None:intergenic | 70.0% | |
TGTTCCGTCTGCGGCGGCGC+TGG | + | chr4.2:44277600-44277619 | MS.gene08871:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 44277379 | 44277879 | 44277379 | ID=MS.gene08871 |
chr4.2 | mRNA | 44277379 | 44277879 | 44277379 | ID=MS.gene08871.t1;Parent=MS.gene08871 |
chr4.2 | exon | 44277379 | 44277879 | 44277379 | ID=MS.gene08871.t1.exon1;Parent=MS.gene08871.t1 |
chr4.2 | CDS | 44277379 | 44277879 | 44277379 | ID=cds.MS.gene08871.t1;Parent=MS.gene08871.t1 |
Gene Sequence |
Protein sequence |