Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057738.t1 | XP_013456527.1 | 99.2 | 259 | 2 | 0 | 1 | 259 | 1 | 259 | 1.10E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057738.t1 | Q9LZH9 | 88.0 | 258 | 28 | 1 | 1 | 258 | 1 | 255 | 1.4e-123 | 443.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057738.t1 | I3T063 | 99.2 | 259 | 2 | 0 | 1 | 259 | 1 | 259 | 7.8e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057738 | MS.gene08870 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene057738 | MS.gene08871 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene057738 | MS.gene51467 | 0.848991 | 4.31E-60 | -1.69E-46 |
| MS.gene057738 | MS.gene52105 | 0.830296 | 3.18E-55 | -1.69E-46 |
| MS.gene057738 | MS.gene59228 | 0.807592 | 4.69E-50 | -1.69E-46 |
| MS.gene057738 | MS.gene88918 | 0.801696 | 7.97E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057738.t1 | MTR_4g074260 | 99.228 | 259 | 2 | 0 | 1 | 259 | 1 | 259 | 0.0 | 518 |
| MS.gene057738.t1 | MTR_7g027235 | 92.692 | 260 | 18 | 1 | 1 | 259 | 1 | 260 | 1.82e-177 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057738.t1 | AT3G62870 | 87.645 | 259 | 29 | 1 | 1 | 259 | 1 | 256 | 4.21e-169 | 467 |
| MS.gene057738.t1 | AT2G47610 | 87.137 | 241 | 31 | 0 | 19 | 259 | 17 | 257 | 3.14e-160 | 445 |
Find 83 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTCTTGGCTTGGGATT+TGG | 0.209141 | 4.4:-36117264 | None:intergenic |
| AGGCCATACTTCACATTAAT+AGG | 0.264776 | 4.4:-36116643 | None:intergenic |
| GAGAAGCGTCCAAAGCAATT+TGG | 0.271255 | 4.4:+36115528 | MS.gene057738:CDS |
| CTTTGCCTTGGTCTTGGCTT+GGG | 0.278418 | 4.4:-36117270 | None:intergenic |
| CAGGGTCCTAGAGGCGATTA+AGG | 0.309642 | 4.4:+36117090 | MS.gene057738:CDS |
| CCTTTCCTTTGCCTTGGTCT+TGG | 0.313711 | 4.4:-36117276 | None:intergenic |
| CTTCGGCCACTTCACGAATC+TGG | 0.319581 | 4.4:-36115586 | None:intergenic |
| CCTTTGCCTTGGTCTTGGCT+TGG | 0.320697 | 4.4:-36117271 | None:intergenic |
| TTCTTCTTTGAAGCTGCAAC+TGG | 0.338108 | 4.4:-36115380 | None:intergenic |
| TTGCCCTTAACAATACAGTA+TGG | 0.340642 | 4.4:-36116889 | None:intergenic |
| CATTCTCTGGGCAGCCTCCT+TGG | 0.347883 | 4.4:-36117306 | None:intergenic |
| CCTCCAATTCCAAATTGCTT+TGG | 0.359017 | 4.4:-36115537 | None:intergenic |
| AAGCCTATTAATGTGAAGTA+TGG | 0.361147 | 4.4:+36116640 | MS.gene057738:CDS |
| CGTCCAAAGCAATTTGGAAT+TGG | 0.369614 | 4.4:+36115534 | MS.gene057738:CDS |
| TTCTTCTCAGCCTTGTCCTC+AGG | 0.377096 | 4.4:-36116559 | None:intergenic |
| CTCTGCACCTGAACGTTCTT+CGG | 0.382996 | 4.4:-36115603 | None:intergenic |
| GAAGTGGGGTGGTGGAATCA+TGG | 0.397393 | 4.4:+36117238 | MS.gene057738:CDS |
| AATCCCATACTGTATTGTTA+AGG | 0.413635 | 4.4:+36116885 | MS.gene057738:CDS |
| AATAAGCCTTTCCTTTGCCT+TGG | 0.418296 | 4.4:-36117282 | None:intergenic |
| ACAACTCCTAGGTCATTCTC+TGG | 0.422899 | 4.4:-36117319 | None:intergenic |
| TCCATCTTCCTGCTCAAGGC+TGG | 0.426318 | 4.4:-36116862 | None:intergenic |
| AAGGGCTCAGGCAGAGGCTG+AGG | 0.430646 | 4.4:+36116597 | MS.gene057738:CDS |
| TACAGGAAGAAGTGGGGTGG+TGG | 0.431668 | 4.4:+36117230 | MS.gene057738:CDS |
| TCTGGCTTCCAGCCTTGAGC+AGG | 0.434828 | 4.4:+36116854 | MS.gene057738:CDS |
| ACCCCATTGAATTAGTTGTC+TGG | 0.442276 | 4.4:+36116836 | MS.gene057738:CDS |
| AGCCAGACAACTAATTCAAT+GGG | 0.443985 | 4.4:-36116838 | None:intergenic |
| TGAGGAGTACAGGAAGAAGT+GGG | 0.451890 | 4.4:+36117223 | MS.gene057738:CDS |
| ATCCCATACTGTATTGTTAA+GGG | 0.456742 | 4.4:+36116886 | MS.gene057738:CDS |
| AAGACAAAATGGAGTTCAGC+AGG | 0.470262 | 4.4:+36117071 | MS.gene057738:CDS |
| ATGAGGAGTACAGGAAGAAG+TGG | 0.472066 | 4.4:+36117222 | MS.gene057738:CDS |
| CGTGAGCAATCACGACAAGC+TGG | 0.479843 | 4.4:-36116807 | None:intergenic |
| CCAAAGCAATTTGGAATTGG+AGG | 0.482647 | 4.4:+36115537 | MS.gene057738:CDS |
| TCAAGATACTTCTGAAGTAC+AGG | 0.489642 | 4.4:+36116536 | MS.gene057738:CDS |
| TTTGAAAAGGGCTCAGGCAG+AGG | 0.490294 | 4.4:+36116591 | MS.gene057738:CDS |
| TCCAGCCTTGAGCAGGAAGA+TGG | 0.490351 | 4.4:+36116861 | MS.gene057738:CDS |
| AAGTGGGGTGGTGGAATCAT+GGG | 0.491130 | 4.4:+36117239 | MS.gene057738:CDS |
| AAGCCAGACAACTAATTCAA+TGG | 0.495839 | 4.4:-36116839 | None:intergenic |
| TGAGGACAAGGCTGAGAAGA+AGG | 0.500213 | 4.4:+36116561 | MS.gene057738:CDS |
| TTAGTGAACTGGTTCAAAGC+TGG | 0.502229 | 4.4:-36115663 | None:intergenic |
| TTGGACGCTTCTCGAATAGC+GGG | 0.505390 | 4.4:-36115518 | None:intergenic |
| GAAGTGGCCGAAGAACGTTC+AGG | 0.510705 | 4.4:+36115596 | MS.gene057738:CDS |
| ATGACAAGTATGAGGAGTAC+AGG | 0.517239 | 4.4:+36117213 | MS.gene057738:CDS |
| GATTTCCATCTTCCTGCTCA+AGG | 0.518180 | 4.4:-36116866 | None:intergenic |
| GAAGTACAGGCCTGAGGACA+AGG | 0.533130 | 4.4:+36116549 | MS.gene057738:CDS |
| AGGTGCATTGCCGCCGAAGA+GGG | 0.544548 | 4.4:+36115557 | MS.gene057738:CDS |
| ACAACAAACTTACACTTCCT+AGG | 0.547646 | 4.4:-36116918 | None:intergenic |
| TGCCCTTAACAATACAGTAT+GGG | 0.553243 | 4.4:-36116888 | None:intergenic |
| CAAACTTACACTTCCTAGGC+GGG | 0.561796 | 4.4:-36116914 | None:intergenic |
| ATTTGACCAGATTCGTGAAG+TGG | 0.563086 | 4.4:+36115580 | MS.gene057738:CDS |
| AAATTTCAATGACAAGTATG+AGG | 0.565347 | 4.4:+36117205 | MS.gene057738:CDS |
| GTGAACTGGTTCAAAGCTGG+TGG | 0.574137 | 4.4:-36115660 | None:intergenic |
| TTCAGGTGCAGAGGAAGAAG+AGG | 0.574820 | 4.4:+36115613 | MS.gene057738:CDS |
| AGGGCTCAGGCAGAGGCTGA+GGG | 0.575749 | 4.4:+36116598 | MS.gene057738:CDS |
| ATGCCACCTTAATCGCCTCT+AGG | 0.580251 | 4.4:-36117096 | None:intergenic |
| AATCTGGTCAAATCCCTCTT+CGG | 0.586903 | 4.4:-36115570 | None:intergenic |
| GTTAAGGGCAAGGCCCGCCT+AGG | 0.589576 | 4.4:+36116901 | MS.gene057738:CDS |
| GTGAGCAATCACGACAAGCT+GGG | 0.590287 | 4.4:-36116806 | None:intergenic |
| CGAAGAACGTTCAGGTGCAG+AGG | 0.592402 | 4.4:+36115604 | MS.gene057738:CDS |
| TTTGGACGCTTCTCGAATAG+CGG | 0.595981 | 4.4:-36115519 | None:intergenic |
| GAGGTGCATTGCCGCCGAAG+AGG | 0.597405 | 4.4:+36115556 | MS.gene057738:CDS |
| CCAAGCCAAGACCAAGGCAA+AGG | 0.598075 | 4.4:+36117271 | MS.gene057738:CDS |
| ATACTGTATTGTTAAGGGCA+AGG | 0.604440 | 4.4:+36116891 | MS.gene057738:CDS |
| TGAGGTAGGTAACATGATTG+AGG | 0.604638 | 4.4:-36116663 | None:intergenic |
| ACAAGGCTGAGAAGAAGGAG+AGG | 0.612342 | 4.4:+36116566 | MS.gene057738:CDS |
| AAAGGAAAGGCTTATTGCCA+AGG | 0.613232 | 4.4:+36117289 | MS.gene057738:CDS |
| TGTTACCTACCTCATCGAGC+AGG | 0.615302 | 4.4:+36116672 | MS.gene057738:CDS |
| GGCTGCCCAGAGAATGACCT+AGG | 0.616298 | 4.4:+36117313 | MS.gene057738:CDS |
| AAGTATCTTGAACAAGCTTG+TGG | 0.617064 | 4.4:-36116524 | None:intergenic |
| ACGCTTCTCGAATAGCGGGT+TGG | 0.618890 | 4.4:-36115514 | None:intergenic |
| CCAAGACCAAGGCAAAGGAA+AGG | 0.622185 | 4.4:+36117276 | MS.gene057738:CDS |
| GAGTACAGGAAGAAGTGGGG+TGG | 0.625879 | 4.4:+36117227 | MS.gene057738:CDS |
| GAGGAGTACAGGAAGAAGTG+GGG | 0.627370 | 4.4:+36117224 | MS.gene057738:CDS |
| GGAGTTCAGCAGGGTCCTAG+AGG | 0.633517 | 4.4:+36117081 | MS.gene057738:CDS |
| CTGGTCAAATCCCTCTTCGG+CGG | 0.649718 | 4.4:-36115567 | None:intergenic |
| CAACTCCTAGGTCATTCTCT+GGG | 0.652662 | 4.4:-36117318 | None:intergenic |
| GGAAAGGCTTATTGCCAAGG+AGG | 0.665686 | 4.4:+36117292 | MS.gene057738:CDS |
| CAAATCCCAAGCCAAGACCA+AGG | 0.672977 | 4.4:+36117265 | MS.gene057738:CDS |
| ACAAACTTACACTTCCTAGG+CGG | 0.677034 | 4.4:-36116915 | None:intergenic |
| GAAAGACAACCTGCTCGATG+AGG | 0.683651 | 4.4:-36116681 | None:intergenic |
| GACAACCTGCTCGATGAGGT+AGG | 0.683860 | 4.4:-36116677 | None:intergenic |
| AGACAAAATGGAGTTCAGCA+GGG | 0.687168 | 4.4:+36117072 | MS.gene057738:CDS |
| ACTTCTGAAGTACAGGCCTG+AGG | 0.703947 | 4.4:+36116543 | MS.gene057738:CDS |
| GCCAGACAACTAATTCAATG+GGG | 0.748421 | 4.4:-36116837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATTGTAAAATTAATAT+AGG | + | chr4.4:36115806-36115825 | MS.gene057738:intron | 10.0% |
| !! | AATTATTGTAATGTTATGTT+TGG | + | chr4.4:36115716-36115735 | MS.gene057738:intron | 15.0% |
| !! | CAGTAAAATAACAAATTAAA+AGG | - | chr4.4:36116737-36116756 | None:intergenic | 15.0% |
| !! | GTAAAATTAATATAGGATTT+CGG | + | chr4.4:36115813-36115832 | MS.gene057738:intron | 15.0% |
| !!! | TTTTTGTAATATGTTAATTG+TGG | + | chr4.4:36115784-36115803 | MS.gene057738:intron | 15.0% |
| !! | AAAACCAACATAAAACATAT+CGG | - | chr4.4:36117176-36117195 | None:intergenic | 20.0% |
| !! | AATCAGTATATTGTTATATC+AGG | - | chr4.4:36116435-36116454 | None:intergenic | 20.0% |
| !! | ATCAGTATATTGTTATATCA+GGG | - | chr4.4:36116434-36116453 | None:intergenic | 20.0% |
| !! | TGTTAAAAATGAAGACAAAA+TGG | + | chr4.4:36117060-36117079 | MS.gene057738:CDS | 20.0% |
| !! | TTCAGTCATAAATCATATAT+AGG | - | chr4.4:36116954-36116973 | None:intergenic | 20.0% |
| !!! | AGTTATTTCAAAAGCTTAAA+TGG | - | chr4.4:36116120-36116139 | None:intergenic | 20.0% |
| !!! | ATAAAACATATCGGTTTAAA+TGG | - | chr4.4:36117167-36117186 | None:intergenic | 20.0% |
| !!! | GTTATTTCAAAAGCTTAAAT+GGG | - | chr4.4:36116119-36116138 | None:intergenic | 20.0% |
| !!! | TTTTATGTTGGTTTTATTTC+AGG | + | chr4.4:36117181-36117200 | MS.gene057738:intron | 20.0% |
| ! | AAATTTCAATGACAAGTATG+AGG | + | chr4.4:36117205-36117224 | MS.gene057738:CDS | 25.0% |
| ! | ACGTTAAACAATTATTCGTT+AGG | + | chr4.4:36116368-36116387 | MS.gene057738:intron | 25.0% |
| ! | AGTTGAAAACAAAATTAAGC+AGG | + | chr4.4:36115981-36116000 | MS.gene057738:intron | 25.0% |
| ! | ATATCAATCTACCATTTCAT+AGG | - | chr4.4:36116243-36116262 | None:intergenic | 25.0% |
| ! | ATTCTATGATTTCATTGCTT+TGG | + | chr4.4:36116197-36116216 | MS.gene057738:intron | 25.0% |
| ! | GTTGAAAACAAAATTAAGCA+GGG | + | chr4.4:36115982-36116001 | MS.gene057738:intron | 25.0% |
| ! | TTTATGACTGAATTGAATTC+AGG | + | chr4.4:36116962-36116981 | MS.gene057738:intron | 25.0% |
| !! | TAAACCGATATGTTTTATGT+TGG | + | chr4.4:36117169-36117188 | MS.gene057738:intron | 25.0% |
| !! | TTCATTGTGTTTGATTTCTT+AGG | + | chr4.4:36115334-36115353 | MS.gene057738:intron | 25.0% |
| !!! | TTTGTCTTCATTTTTAACAG+TGG | - | chr4.4:36117059-36117078 | None:intergenic | 25.0% |
| AAAGGAAAAATCAGCAATCT+TGG | - | chr4.4:36116719-36116738 | None:intergenic | 30.0% | |
| AAGCCTATTAATGTGAAGTA+TGG | + | chr4.4:36116640-36116659 | MS.gene057738:CDS | 30.0% | |
| AATCCCATACTGTATTGTTA+AGG | + | chr4.4:36116885-36116904 | MS.gene057738:CDS | 30.0% | |
| ATCCCATACTGTATTGTTAA+GGG | + | chr4.4:36116886-36116905 | MS.gene057738:CDS | 30.0% | |
| CTTATGCAATAAGCTTCAAA+TGG | - | chr4.4:36116014-36116033 | None:intergenic | 30.0% | |
| TAATCTCTCTACACTTAAAC+AGG | + | chr4.4:36116997-36117016 | MS.gene057738:intron | 30.0% | |
| TCGAAAATCGTAAATGAGAT+TGG | - | chr4.4:36115429-36115448 | None:intergenic | 30.0% | |
| ! | AACAAAATTAAGCAGGGTTT+TGG | + | chr4.4:36115988-36116007 | MS.gene057738:intron | 30.0% |
| ! | TGATAAGTACTGTGAAGAAA+TGG | - | chr4.4:36115288-36115307 | None:intergenic | 30.0% |
| ! | TTTGAAGCTTATTGCATAAG+TGG | + | chr4.4:36116014-36116033 | MS.gene057738:intron | 30.0% |
| !! | GCATTTGTTTTCAAATTTGC+AGG | + | chr4.4:36115482-36115501 | MS.gene057738:intron | 30.0% |
| AAAACCCTCGACAAAAATCT+AGG | + | chr4.4:36115684-36115703 | MS.gene057738:CDS | 35.0% | |
| AAATGAGATTGGAATTGACG+CGG | - | chr4.4:36115418-36115437 | None:intergenic | 35.0% | |
| AAGCCAGACAACTAATTCAA+TGG | - | chr4.4:36116842-36116861 | None:intergenic | 35.0% | |
| AAGTATCTTGAACAAGCTTG+TGG | - | chr4.4:36116527-36116546 | None:intergenic | 35.0% | |
| ACAACAAACTTACACTTCCT+AGG | - | chr4.4:36116921-36116940 | None:intergenic | 35.0% | |
| AGCCAGACAACTAATTCAAT+GGG | - | chr4.4:36116841-36116860 | None:intergenic | 35.0% | |
| AGGCCATACTTCACATTAAT+AGG | - | chr4.4:36116646-36116665 | None:intergenic | 35.0% | |
| ATACTGTATTGTTAAGGGCA+AGG | + | chr4.4:36116891-36116910 | MS.gene057738:CDS | 35.0% | |
| ATTTCTTAGGCTCCCAAAAA+AGG | + | chr4.4:36115347-36115366 | MS.gene057738:intron | 35.0% | |
| CGTTAGGTTATATTAGAGTC+TGG | + | chr4.4:36116384-36116403 | MS.gene057738:intron | 35.0% | |
| GAGGCAGTACTTTATTAGTT+TGG | + | chr4.4:36116406-36116425 | MS.gene057738:intron | 35.0% | |
| TAGGTTATATTAGAGTCTGG+AGG | + | chr4.4:36116387-36116406 | MS.gene057738:intron | 35.0% | |
| TGCCCTTAACAATACAGTAT+GGG | - | chr4.4:36116891-36116910 | None:intergenic | 35.0% | |
| TTAATATAGGATTTCGGCCT+TGG | + | chr4.4:36115819-36115838 | MS.gene057738:intron | 35.0% | |
| TTGCCCTTAACAATACAGTA+TGG | - | chr4.4:36116892-36116911 | None:intergenic | 35.0% | |
| ! | AAACAGCAGCAGTTTTCTTA+TGG | - | chr4.4:36117027-36117046 | None:intergenic | 35.0% |
| ! | ACTGGTTTCTTCCTATGAAA+TGG | + | chr4.4:36116229-36116248 | MS.gene057738:intron | 35.0% |
| ! | GTAGAGAAGCTTTTTATCCA+AGG | - | chr4.4:36115839-36115858 | None:intergenic | 35.0% |
| ! | GTTGCTTTCATAAGCTATCT+TGG | + | chr4.4:36115942-36115961 | MS.gene057738:intron | 35.0% |
| ! | GTTTTCAAATTTGCAGGAGA+AGG | + | chr4.4:36115488-36115507 | MS.gene057738:intron | 35.0% |
| ! | TTGCTTTGGTTTCTTTCTAC+TGG | + | chr4.4:36116211-36116230 | MS.gene057738:intron | 35.0% |
| !! | TCAAGATACTTCTGAAGTAC+AGG | + | chr4.4:36116536-36116555 | MS.gene057738:CDS | 35.0% |
| !!! | GGAGCTTTAACACCTTTTTT+GGG | - | chr4.4:36115362-36115381 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTAACACCTTTTT+TGG | - | chr4.4:36115363-36115382 | None:intergenic | 35.0% |
| AAAGGAAAGGCTTATTGCCA+AGG | + | chr4.4:36117289-36117308 | MS.gene057738:CDS | 40.0% | |
| AAGACAAAATGGAGTTCAGC+AGG | + | chr4.4:36117071-36117090 | MS.gene057738:CDS | 40.0% | |
| AATAAGCCTTTCCTTTGCCT+TGG | - | chr4.4:36117285-36117304 | None:intergenic | 40.0% | |
| AATCTGGTCAAATCCCTCTT+CGG | - | chr4.4:36115573-36115592 | None:intergenic | 40.0% | |
| ACAAACTTACACTTCCTAGG+CGG | - | chr4.4:36116918-36116937 | None:intergenic | 40.0% | |
| ACCCCATTGAATTAGTTGTC+TGG | + | chr4.4:36116836-36116855 | MS.gene057738:CDS | 40.0% | |
| AGACAAAATGGAGTTCAGCA+GGG | + | chr4.4:36117072-36117091 | MS.gene057738:CDS | 40.0% | |
| ATTTGACCAGATTCGTGAAG+TGG | + | chr4.4:36115580-36115599 | MS.gene057738:CDS | 40.0% | |
| CCTCCAATTCCAAATTGCTT+TGG | - | chr4.4:36115540-36115559 | None:intergenic | 40.0% | |
| GCCAGACAACTAATTCAATG+GGG | - | chr4.4:36116840-36116859 | None:intergenic | 40.0% | |
| TGAGGTAGGTAACATGATTG+AGG | - | chr4.4:36116666-36116685 | None:intergenic | 40.0% | |
| ! | ATGACAAGTATGAGGAGTAC+AGG | + | chr4.4:36117213-36117232 | MS.gene057738:CDS | 40.0% |
| ! | CCAAAGCAATTTGGAATTGG+AGG | + | chr4.4:36115537-36115556 | MS.gene057738:CDS | 40.0% |
| ! | CGTCCAAAGCAATTTGGAAT+TGG | + | chr4.4:36115534-36115553 | MS.gene057738:CDS | 40.0% |
| ! | CTGACCTAGATTTTTGTCGA+GGG | - | chr4.4:36115691-36115710 | None:intergenic | 40.0% |
| ! | GCTTTAAGCTACAACGTGTA+TGG | - | chr4.4:36116319-36116338 | None:intergenic | 40.0% |
| ! | TCTGACCTAGATTTTTGTCG+AGG | - | chr4.4:36115692-36115711 | None:intergenic | 40.0% |
| ! | TTAGTGAACTGGTTCAAAGC+TGG | - | chr4.4:36115666-36115685 | None:intergenic | 40.0% |
| !! | AGAAGGAGAGGCTTTTGAAA+AGG | + | chr4.4:36116578-36116597 | MS.gene057738:CDS | 40.0% |
| !! | GAAGGAGAGGCTTTTGAAAA+GGG | + | chr4.4:36116579-36116598 | MS.gene057738:CDS | 40.0% |
| !! | TTCTTCTTTGAAGCTGCAAC+TGG | - | chr4.4:36115383-36115402 | None:intergenic | 40.0% |
| !!! | AGAAGAGGATTTTGAAGCAG+AGG | + | chr4.4:36115628-36115647 | MS.gene057738:CDS | 40.0% |
| !!! | GATTTTGAAGCAGAGGTTGA+AGG | + | chr4.4:36115635-36115654 | MS.gene057738:CDS | 40.0% |
| CAAACTTACACTTCCTAGGC+GGG | - | chr4.4:36116917-36116936 | None:intergenic | 45.0% | |
| GAATTGACGCGGTTACTTAC+AGG | - | chr4.4:36115407-36115426 | None:intergenic | 45.0% | |
| GATTTCCATCTTCCTGCTCA+AGG | - | chr4.4:36116869-36116888 | None:intergenic | 45.0% | |
| TGCATGTGCTGCATAAATGC+TGG | + | chr4.4:36116172-36116191 | MS.gene057738:intron | 45.0% | |
| TTTGGACGCTTCTCGAATAG+CGG | - | chr4.4:36115522-36115541 | None:intergenic | 45.0% | |
| ! | ATGAGGAGTACAGGAAGAAG+TGG | + | chr4.4:36117222-36117241 | MS.gene057738:CDS | 45.0% |
| ! | TGAGGAGTACAGGAAGAAGT+GGG | + | chr4.4:36117223-36117242 | MS.gene057738:CDS | 45.0% |
| !! | GAGAAGCGTCCAAAGCAATT+TGG | + | chr4.4:36115528-36115547 | MS.gene057738:CDS | 45.0% |
| !! | TGTCGAGGGTTTTAGTGAAC+TGG | - | chr4.4:36115677-36115696 | None:intergenic | 45.0% |
| ACAAGGCTGAGAAGAAGGAG+AGG | + | chr4.4:36116566-36116585 | MS.gene057738:CDS | 50.0% | |
| ATGCCACCTTAATCGCCTCT+AGG | - | chr4.4:36117099-36117118 | None:intergenic | 50.0% | |
| CAAATCCCAAGCCAAGACCA+AGG | + | chr4.4:36117265-36117284 | MS.gene057738:CDS | 50.0% | |
| CCAAGACCAAGGCAAAGGAA+AGG | + | chr4.4:36117276-36117295 | MS.gene057738:CDS | 50.0% | |
| CCTTTCCTTTGCCTTGGTCT+TGG | - | chr4.4:36117279-36117298 | None:intergenic | 50.0% | |
| CTCTGCACCTGAACGTTCTT+CGG | - | chr4.4:36115606-36115625 | None:intergenic | 50.0% | |
| GAAAGACAACCTGCTCGATG+AGG | - | chr4.4:36116684-36116703 | None:intergenic | 50.0% | |
| GGAAAGGCTTATTGCCAAGG+AGG | + | chr4.4:36117292-36117311 | MS.gene057738:CDS | 50.0% | |
| GTGAGCAATCACGACAAGCT+GGG | - | chr4.4:36116809-36116828 | None:intergenic | 50.0% | |
| TGAGGACAAGGCTGAGAAGA+AGG | + | chr4.4:36116561-36116580 | MS.gene057738:CDS | 50.0% | |
| TGTTACCTACCTCATCGAGC+AGG | + | chr4.4:36116672-36116691 | MS.gene057738:CDS | 50.0% | |
| TTCAGGTGCAGAGGAAGAAG+AGG | + | chr4.4:36115613-36115632 | MS.gene057738:CDS | 50.0% | |
| TTGGACGCTTCTCGAATAGC+GGG | - | chr4.4:36115521-36115540 | None:intergenic | 50.0% | |
| TTTGAAAAGGGCTCAGGCAG+AGG | + | chr4.4:36116591-36116610 | MS.gene057738:CDS | 50.0% | |
| ! | GAGGAGTACAGGAAGAAGTG+GGG | + | chr4.4:36117224-36117243 | MS.gene057738:CDS | 50.0% |
| ! | GTGAACTGGTTCAAAGCTGG+TGG | - | chr4.4:36115663-36115682 | None:intergenic | 50.0% |
| ! | TTCTTCTCAGCCTTGTCCTC+AGG | - | chr4.4:36116562-36116581 | None:intergenic | 50.0% |
| !! | AAGTGGGGTGGTGGAATCAT+GGG | + | chr4.4:36117239-36117258 | MS.gene057738:CDS | 50.0% |
| !! | ACTTCTGAAGTACAGGCCTG+AGG | + | chr4.4:36116543-36116562 | MS.gene057738:CDS | 50.0% |
| !! | CTTGGTCTTGGCTTGGGATT+TGG | - | chr4.4:36117267-36117286 | None:intergenic | 50.0% |
| !! | CTTTGCCTTGGTCTTGGCTT+GGG | - | chr4.4:36117273-36117292 | None:intergenic | 50.0% |
| !! | GAGGCTTTTGAAAAGGGCTC+AGG | + | chr4.4:36116585-36116604 | MS.gene057738:CDS | 50.0% |
| CAGGGTCCTAGAGGCGATTA+AGG | + | chr4.4:36117090-36117109 | MS.gene057738:CDS | 55.0% | |
| CCAAGCCAAGACCAAGGCAA+AGG | + | chr4.4:36117271-36117290 | MS.gene057738:CDS | 55.0% | |
| CGAAGAACGTTCAGGTGCAG+AGG | + | chr4.4:36115604-36115623 | MS.gene057738:CDS | 55.0% | |
| CGTGAGCAATCACGACAAGC+TGG | - | chr4.4:36116810-36116829 | None:intergenic | 55.0% | |
| CTGGTCAAATCCCTCTTCGG+CGG | - | chr4.4:36115570-36115589 | None:intergenic | 55.0% | |
| CTTCGGCCACTTCACGAATC+TGG | - | chr4.4:36115589-36115608 | None:intergenic | 55.0% | |
| GAACAAGCTTGTGGCTGCAG+AGG | - | chr4.4:36116518-36116537 | None:intergenic | 55.0% | |
| GAAGTACAGGCCTGAGGACA+AGG | + | chr4.4:36116549-36116568 | MS.gene057738:CDS | 55.0% | |
| GAAGTGGCCGAAGAACGTTC+AGG | + | chr4.4:36115596-36115615 | MS.gene057738:CDS | 55.0% | |
| GACAACCTGCTCGATGAGGT+AGG | - | chr4.4:36116680-36116699 | None:intergenic | 55.0% | |
| GAGTACAGGAAGAAGTGGGG+TGG | + | chr4.4:36117227-36117246 | MS.gene057738:CDS | 55.0% | |
| GGTCCTAGAGGCGATTAAGG+TGG | + | chr4.4:36117093-36117112 | MS.gene057738:intron | 55.0% | |
| TACAGGAAGAAGTGGGGTGG+TGG | + | chr4.4:36117230-36117249 | MS.gene057738:CDS | 55.0% | |
| TCCAGCCTTGAGCAGGAAGA+TGG | + | chr4.4:36116861-36116880 | MS.gene057738:CDS | 55.0% | |
| TCCATCTTCCTGCTCAAGGC+TGG | - | chr4.4:36116865-36116884 | None:intergenic | 55.0% | |
| !! | ACGCTTCTCGAATAGCGGGT+TGG | - | chr4.4:36115517-36115536 | None:intergenic | 55.0% |
| !! | CCTTTGCCTTGGTCTTGGCT+TGG | - | chr4.4:36117274-36117293 | None:intergenic | 55.0% |
| !! | GAAGTGGGGTGGTGGAATCA+TGG | + | chr4.4:36117238-36117257 | MS.gene057738:CDS | 55.0% |
| AGGTGCATTGCCGCCGAAGA+GGG | + | chr4.4:36115557-36115576 | MS.gene057738:CDS | 60.0% | |
| CATTCTCTGGGCAGCCTCCT+TGG | - | chr4.4:36117309-36117328 | None:intergenic | 60.0% | |
| GGAGTTCAGCAGGGTCCTAG+AGG | + | chr4.4:36117081-36117100 | MS.gene057738:CDS | 60.0% | |
| ! | TCTGGCTTCCAGCCTTGAGC+AGG | + | chr4.4:36116854-36116873 | MS.gene057738:CDS | 60.0% |
| AAGGGCTCAGGCAGAGGCTG+AGG | + | chr4.4:36116597-36116616 | MS.gene057738:CDS | 65.0% | |
| AGGGCTCAGGCAGAGGCTGA+GGG | + | chr4.4:36116598-36116617 | MS.gene057738:CDS | 65.0% | |
| GAGGTGCATTGCCGCCGAAG+AGG | + | chr4.4:36115556-36115575 | MS.gene057738:CDS | 65.0% | |
| GTTAAGGGCAAGGCCCGCCT+AGG | + | chr4.4:36116901-36116920 | MS.gene057738:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36115253 | 36117334 | 36115253 | ID=MS.gene057738 |
| chr4.4 | mRNA | 36115253 | 36117334 | 36115253 | ID=MS.gene057738.t1;Parent=MS.gene057738 |
| chr4.4 | exon | 36115253 | 36115255 | 36115253 | ID=MS.gene057738.t1.exon1;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36115253 | 36115255 | 36115253 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36115356 | 36115406 | 36115356 | ID=MS.gene057738.t1.exon2;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36115356 | 36115406 | 36115356 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36115504 | 36115705 | 36115504 | ID=MS.gene057738.t1.exon3;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36115504 | 36115705 | 36115504 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36116524 | 36116693 | 36116524 | ID=MS.gene057738.t1.exon4;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36116524 | 36116693 | 36116524 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36116799 | 36116927 | 36116799 | ID=MS.gene057738.t1.exon5;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36116799 | 36116927 | 36116799 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36117019 | 36117111 | 36117019 | ID=MS.gene057738.t1.exon6;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36117019 | 36117111 | 36117019 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| chr4.4 | exon | 36117203 | 36117334 | 36117203 | ID=MS.gene057738.t1.exon7;Parent=MS.gene057738.t1 |
| chr4.4 | CDS | 36117203 | 36117334 | 36117203 | ID=cds.MS.gene057738.t1;Parent=MS.gene057738.t1 |
| Gene Sequence |
| Protein sequence |
