AlfalfaGEDB | MS.gene08870

M. sativa cultivar XinJiangDaYe / MS.gene08870

KEGG: K02870
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00298.22 PF03946.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08870.t1	XP_003606385.1	99.4	166	1	0	1	166	1	166	8.00E-84	319.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08870.t1	O50003	93.4	166	11	0	1	166	1	166	1.2e-80	300.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08870.t1	B7FH91	99.4	166	1	0	1	166	1	166	5.8e-84	319.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene08870	0.824145	9.46E-54	-1.69E-46
MS.gene049387	MS.gene08870	0.81321	2.87E-51	-1.69E-46
MS.gene050134	MS.gene08870	0.97882	1.24E-146	-1.69E-46
MS.gene050252	MS.gene08870	0.823521	1.32E-53	-1.69E-46
MS.gene050791	MS.gene08870	0.886968	2.15E-72	-1.69E-46
MS.gene050912	MS.gene08870	0.827598	1.43E-54	-1.69E-46
MS.gene051904	MS.gene08870	0.806303	8.78E-50	-1.69E-46
MS.gene051925	MS.gene08870	0.818146	2.28E-52	-1.69E-46
MS.gene051984	MS.gene08870	0.866264	3.24E-65	-1.69E-46
MS.gene052664	MS.gene08870	0.894518	2.29E-75	-1.69E-46
MS.gene052666	MS.gene08870	0.867678	1.15E-65	-1.69E-46
MS.gene053224	MS.gene08870	0.914388	2.03E-84	-1.69E-46
MS.gene054624	MS.gene08870	0.825527	4.46E-54	-1.69E-46
MS.gene057272	MS.gene08870	0.912108	2.84E-83	-1.69E-46
MS.gene057641	MS.gene08870	0.862335	5.45E-64	-1.69E-46
MS.gene057643	MS.gene08870	0.893634	5.24E-75	-1.69E-46
MS.gene057738	MS.gene08870	0.815934	7.17E-52	-1.69E-46
MS.gene059340	MS.gene08870	0.861116	1.29E-63	-1.69E-46
MS.gene060432	MS.gene08870	0.807867	4.10E-50	-1.69E-46
MS.gene060483	MS.gene08870	0.879768	9.51E-70	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene08870	MS.gene059422	PPI
MS.gene08870	MS.gene99744	PPI
MS.gene08870	MS.gene067072	PPI
MS.gene08870	MS.gene029242	PPI
MS.gene08870	MS.gene050134	PPI
MS.gene08870	MS.gene045180	PPI
MS.gene08870	MS.gene007661	PPI
MS.gene08870	MS.gene08636	PPI
MS.gene08870	MS.gene001986	PPI
MS.gene08870	MS.gene007662	PPI
MS.gene08870	MS.gene063366	PPI
MS.gene08870	MS.gene060216	PPI
MS.gene08870	MS.gene029840	PPI
MS.gene08870	MS.gene41916	PPI
MS.gene08870	MS.gene45417	PPI
MS.gene08870	MS.gene054186	PPI
MS.gene08870	MS.gene056257	PPI
MS.gene08870	MS.gene039110	PPI
MS.gene08870	MS.gene08871	PPI
MS.gene08870	MS.gene63721	PPI
MS.gene08870	MS.gene037324	PPI
MS.gene066163	MS.gene08870	PPI
MS.gene040581	MS.gene08870	PPI
MS.gene08870	MS.gene75537	PPI
MS.gene08870	MS.gene24598	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08870.t1	MTR_4g059400	99.398	166	1	1	166	1	166	1.89e-116	327
MS.gene08870.t1	MTR_1g064500	99.390	164	1	1	164	1	164	2.24e-114	321
MS.gene08870.t1	MTR_2g094300	83.537	164	27	1	164	1	164	1.50e-97	279

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08870.t1	AT5G60670	90.361	166	16	1	166	1	166	9.53e-108	305
MS.gene08870.t1	AT2G37190	89.759	166	17	1	166	1	166	1.20e-107	304
MS.gene08870.t1	AT3G53430	89.157	166	18	1	166	1	166	2.70e-107	303

Find 0 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACTAAGAACATCAAGCATAA+TGG	+	32375:9379-9398	MS.gene08870:CDS	30.0%
	CTAAGAACATCAAGCATAAT+GGG	+	32375:9380-9399	MS.gene08870:CDS	30.0%
!	TGATGTTCTTAGTCTTCTTG+CGG	-	32375:9372-9391	MS.gene08870:intergenic	35.0%
	ATGTCTTCTCCGATCTTCTT+TGG	-	32375:9211-9230	MS.gene08870:intergenic	40.0%
	GACGTAAACTTCGACGATTT+GGG	-	32375:9119-9138	MS.gene08870:intergenic	40.0%
!	TAAACTTCGACGATTTGGGA+TGG	-	32375:9115-9134	MS.gene08870:intergenic	40.0%
!	TGTTGATGGGAAAGATCCAA+AGG	+	32375:9522-9541	MS.gene08870:CDS	40.0%
	AGATCCAAAGGATTTGCAGC+AGG	+	32375:9534-9553	MS.gene08870:CDS	45.0%
	ATCTCCTGCTGCAAATCCTT+TGG	-	32375:9541-9560	MS.gene08870:intergenic	45.0%
	CAAAATCTCCTTCACCGTTC+CGG	-	32375:9476-9495	MS.gene08870:intergenic	45.0%
	CAAGGATTGGAAGGGTCTTA+GGG	+	32375:9246-9265	MS.gene08870:CDS	45.0%
	CTGTTGGGTGTACTGTTGAT+GGG	+	32375:9509-9528	MS.gene08870:CDS	45.0%
	CTTAGCCTGACGATTCTGAA+CGG	-	32375:9287-9306	MS.gene08870:intergenic	45.0%
	GGACGTAAACTTCGACGATT+TGG	-	32375:9120-9139	MS.gene08870:intergenic	45.0%
	GGTCTCTCACCAAAGAAGAT+CGG	+	32375:9199-9218	MS.gene08870:CDS	45.0%
	TCTGTTGGGTGTACTGTTGA+TGG	+	32375:9508-9527	MS.gene08870:CDS	45.0%
	TTGCAGCAGGAGATTAGTGA+TGG	+	32375:9547-9566	MS.gene08870:CDS	45.0%
	TTGCGAAGATTATGAAGCCG+AGG	+	32375:9431-9450	MS.gene08870:CDS	45.0%
!	ATTTGGGATGGATCGAGCTT+TGG	-	32375:9103-9122	MS.gene08870:intergenic	45.0%
!	GAACGGTGAAGGAGATTTTG+GGG	+	32375:9476-9495	MS.gene08870:CDS	45.0%
!	GCTGGTTATCAAGGCTTTGA+AGG	+	32375:9333-9352	MS.gene08870:CDS	45.0%
!	GGAACGGTGAAGGAGATTTT+GGG	+	32375:9475-9494	MS.gene08870:CDS	45.0%
!	TGGGGACTTGTGTTTCTGTT+GGG	+	32375:9494-9513	MS.gene08870:CDS	45.0%
!	TGGTGATGTTGAGATTCCTC+AGG	+	32375:9567-9586	MS.gene08870:CDS	45.0%
!	TTGGGGACTTGTGTTTCTGT+TGG	+	32375:9493-9512	MS.gene08870:CDS	45.0%
!!	AGGCTTTGAAGGAACCAGAA+AGG	+	32375:9344-9363	MS.gene08870:CDS	45.0%
!!	GGCTTTGAAGGAACCAGAAA+GGG	+	32375:9345-9364	MS.gene08870:CDS	45.0%
	AAGACCCTTCCAATCCTTGG+CGG	-	32375:9245-9264	MS.gene08869:intergenic	50.0%
	AGAAACCGCCAAGGATTGGA+AGG	+	32375:9237-9256	MS.gene08870:CDS	50.0%
	CCAAAGAAACCGCCAAGGAT+TGG	+	32375:9233-9252	MS.gene08870:CDS	50.0%
	CCAAGGATTGGAAGGGTCTT+AGG	+	32375:9245-9264	MS.gene08870:CDS	50.0%
	CCAATCCTTGGCGGTTTCTT+TGG	-	32375:9236-9255	MS.gene08870:intergenic	50.0%
	CCTAAGACCCTTCCAATCCT+TGG	-	32375:9248-9267	MS.gene08870:intergenic	50.0%
	CGTTCAGAATCGTCAGGCTA+AGG	+	32375:9285-9304	MS.gene08870:CDS	50.0%
	GAAACCGCCAAGGATTGGAA+GGG	+	32375:9238-9257	MS.gene08870:CDS	50.0%
	GATTATGAAGCCGAGGTCGA+TGG	+	32375:9438-9457	MS.gene08870:CDS	50.0%
	TTCTTTGGTGAGAGACCGAG+AGG	-	32375:9196-9215	MS.gene08870:intergenic	50.0%
!	CGGAACGGTGAAGGAGATTT+TGG	+	32375:9474-9493	MS.gene08870:CDS	50.0%
	AGACCGAGAGGACCGATCTT+GGG	-	32375:9184-9203	MS.gene08870:intergenic	55.0%
	AGTTCCCTCGCTCCCAAGAT+CGG	+	32375:9169-9188	MS.gene08870:CDS	55.0%
	CATCGCCAAAGAAACCGCCA+AGG	+	32375:9228-9247	MS.gene08870:CDS	55.0%
	GAAGTTTACGTCCGCGTCAC+CGG	+	32375:9127-9146	MS.gene08870:CDS	55.0%
	GCTCACCGTTCAGAATCGTC+AGG	+	32375:9279-9298	MS.gene08870:CDS	55.0%
	GTCTTCTTGCGGTCCCTTTC+TGG	-	32375:9361-9380	MS.gene08870:intergenic	55.0%
!	TGGGATGGATCGAGCTTTGG+CGG	-	32375:9100-9119	MS.gene08870:intergenic	55.0%
	AGCTCCTTCGCCATCGACCT+CGG	-	32375:9451-9470	MS.gene08870:intergenic	60.0%
	AGGACCGATCTTGGGAGCGA+GGG	-	32375:9176-9195	MS.gene08870:intergenic	60.0%
	GAGACCGAGAGGACCGATCT+TGG	-	32375:9185-9204	MS.gene08870:intergenic	60.0%
	GATCTTGGGAGCGAGGGAAC+TGG	-	32375:9170-9189	MS.gene08870:intergenic	60.0%
	GCTCCCAAGATCGGTCCTCT+CGG	+	32375:9178-9197	MS.gene08870:CDS	60.0%
	GGTCGCTGTTGTTCCGTCTG+CGG	+	32375:9306-9325	MS.gene08870:CDS	60.0%
	TCGATGGCGAAGGAGCTTGC+CGG	+	32375:9454-9473	MS.gene08870:CDS	60.0%
	ATAACCAGCGCCGCCGCAGA+CGG	-	32375:9322-9341	MS.gene08870:intergenic	65.0%
	CGCTGTTGTTCCGTCTGCGG+CGG	+	32375:9309-9328	MS.gene08870:CDS	65.0%
	GAAGCCGAGGTCGATGGCGA+AGG	+	32375:9444-9463	MS.gene08870:CDS	65.0%
	GAGGACCGATCTTGGGAGCG+AGG	-	32375:9177-9196	MS.gene08870:intergenic	65.0%
	GGAGCTTGCCGGAACGGTGA+AGG	+	32375:9465-9484	MS.gene08870:CDS	65.0%
	GGCGAAGGAGCTTGCCGGAA+CGG	+	32375:9459-9478	MS.gene08870:CDS	65.0%
	GTTTACGTCCGCGTCACCGG+CGG	+	32375:9130-9149	MS.gene08870:CDS	65.0%
!!	TGCGGCGGCGCTGGTTATCA+AGG	+	32375:9324-9343	MS.gene08870:CDS	65.0%
	CGACTTCACCGCCGGTGACG+CGG	-	32375:9141-9160	MS.gene08870:intergenic	70.0%
	CGCGTCACCGGCGGTGAAGT+CGG	+	32375:9139-9158	MS.gene08870:CDS	70.0%
	GGCAGCTCCGACTTCACCGC+CGG	-	32375:9149-9168	MS.gene08870:intergenic	70.0%
	TGTTCCGTCTGCGGCGGCGC+TGG	+	32375:9315-9334	MS.gene08870:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
32375	gene	9094	9594	9094	ID=MS.gene08870
32375	mRNA	9094	9594	9094	ID=MS.gene08870.t1;Parent=MS.gene08870
32375	exon	9094	9594	9094	ID=MS.gene08870.t1.exon1;Parent=MS.gene08870.t1
32375	CDS	9094	9594	9094	ID=cds.MS.gene08870.t1;Parent=MS.gene08870.t1

Gene Sequence

>MS.gene08870

ATGCCGCCAAAGCTCGATCCATCCCAAATCGTCGAAGTTTACGTCCGCGTCACCGGCGGTGAAGTCGGAGCTGCCAGTTCCCTCGCTCCCAAGATCGGTCCTCTCGGTCTCTCACCAAAGAAGATCGGAGAAGACATCGCCAAAGAAACCGCCAAGGATTGGAAGGGTCTTAGGGTGACAGTCAAGCTCACCGTTCAGAATCGTCAGGCTAAGGTCGCTGTTGTTCCGTCTGCGGCGGCGCTGGTTATCAAGGCTTTGAAGGAACCAGAAAGGGACCGCAAGAAGACTAAGAACATCAAGCATAATGGGAATATCTCTCTTGATGATGTTATTGAGATTGCGAAGATTATGAAGCCGAGGTCGATGGCGAAGGAGCTTGCCGGAACGGTGAAGGAGATTTTGGGGACTTGTGTTTCTGTTGGGTGTACTGTTGATGGGAAAGATCCAAAGGATTTGCAGCAGGAGATTAGTGATGGTGATGTTGAGATTCCTCAGGATTGA

Protein sequence

>MS.gene08870.t1

MPPKLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD